Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344610 | XP_013469954.1 | 94.931 | 217 | 8 | 1 | 1 | 217 | 1 | 214 | 1.93e-147 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344610 | A0A072VQC5 | 94.931 | 217 | 8 | 1 | 1 | 217 | 1 | 214 | 9.23e-148 | 419 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093940 | Msa1344610 | 0.816069 | 6.687284e-52 | -8.615850e-47 |
| Msa1344610 | Msa1346540 | 0.916358 | 1.960477e-85 | -8.615850e-47 |
| Msa1344610 | Msa1452200 | 0.814490 | 1.500701e-51 | -8.615850e-47 |
| Msa0604640 | Msa1344610 | 0.809967 | 1.456397e-50 | -8.615850e-47 |
| Msa0731740 | Msa1344610 | 0.818534 | 1.864670e-52 | -8.615850e-47 |
| Msa0766880 | Msa1344610 | 0.806808 | 6.871162e-50 | -8.615850e-47 |
| Msa0771960 | Msa1344610 | 0.823272 | 1.514706e-53 | -8.615850e-47 |
| Msa0796610 | Msa1344610 | 0.811230 | 7.767314e-51 | -8.615850e-47 |
| Msa0197150 | Msa1344610 | 0.805284 | 1.437688e-49 | -8.615850e-47 |
| Msa0220410 | Msa1344610 | 0.805796 | 1.123079e-49 | -8.615850e-47 |
| Msa0222720 | Msa1344610 | 0.805668 | 1.194534e-49 | -8.615850e-47 |
| Msa1233760 | Msa1344610 | 0.817991 | 2.474436e-52 | -8.615850e-47 |
| Msa1242990 | Msa1344610 | 0.817919 | 2.568902e-52 | -8.615850e-47 |
| Msa1342400 | Msa1344610 | 0.831891 | 1.290665e-55 | -8.615850e-47 |
| Msa1344080 | Msa1344610 | 0.914499 | 1.783898e-84 | -8.615850e-47 |
| Msa0404180 | Msa1344610 | 0.806552 | 7.782116e-50 | -8.615850e-47 |
| Msa0456480 | Msa1344610 | 0.810162 | 1.322156e-50 | -8.615850e-47 |
| Msa1016130 | Msa1344610 | 0.801822 | 7.510840e-49 | -8.615850e-47 |
| Msa0256430 | Msa1344610 | 0.825298 | 5.058518e-54 | -8.615850e-47 |
| Msa0264020 | Msa1344610 | 0.813012 | 3.175102e-51 | -8.615850e-47 |
| Msa0295840 | Msa1344610 | 0.805297 | 1.429021e-49 | -8.615850e-47 |
| Msa0334180 | Msa1344610 | 0.834805 | 2.424157e-56 | -8.615850e-47 |
| Msa0339340 | Msa1344610 | 0.845865 | 3.110120e-59 | -8.615850e-47 |
| Msa1223510 | Msa1344610 | 0.813862 | 2.064721e-51 | -8.615850e-47 |
| Msa0496570 | Msa1344610 | 0.820281 | 7.453716e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344610 | MtrunA17_Chr1g0206811 | 94.931 | 217 | 8 | 1 | 1 | 217 | 1 | 214 | 1.78e-151 | 419 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344610 | AT1G50020.1 | 52.830 | 212 | 88 | 5 | 8 | 217 | 8 | 209 | 4.14e-70 | 213 |
Find 53 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAATTTCTGGGAAAAT+TGG | 0.118542 | tig0006809:-60263 | None:intergenic |
| ATTATTCCATGAAGAATTTC+TGG | 0.158065 | tig0006809:-60272 | None:intergenic |
| TAGCTCCTCGGCTAAATTAA+AGG | 0.278659 | tig0006809:+63071 | Msa1344610:CDS |
| TCAACACTTCCAAGTCTTCC+AGG | 0.320266 | tig0006809:+60344 | Msa1344610:CDS |
| GGAACATTCTTCTTGGCATT+TGG | 0.330859 | tig0006809:+62165 | Msa1344610:CDS |
| GAATCAGAGGGAACGGTCTA+TGG | 0.337234 | tig0006809:+61489 | Msa1344610:CDS |
| ACTTGGAGGAACATTCTTCT+TGG | 0.347709 | tig0006809:+62158 | Msa1344610:CDS |
| CGTCTGTGAATGAAGAAGAT+AGG | 0.375141 | tig0006809:+61416 | Msa1344610:CDS |
| GATTACAAGCAAACCAACTA+TGG | 0.380799 | tig0006809:+61379 | Msa1344610:CDS |
| CTTCCGTCGTGGACAAAACT+TGG | 0.396329 | tig0006809:-62977 | None:intergenic |
| TCATCTTCTAAGAGTGCATA+AGG | 0.401040 | tig0006809:-63034 | None:intergenic |
| CTCTTCATCAACTCCATAGT+TGG | 0.411357 | tig0006809:-61392 | None:intergenic |
| GGGAAAATTGGATTGTGAAA+GGG | 0.446334 | tig0006809:-60251 | None:intergenic |
| TGGGAAAATTGGATTGTGAA+AGG | 0.466227 | tig0006809:-60252 | None:intergenic |
| GTGAAAGGGAAAGTTGAGAG+AGG | 0.470279 | tig0006809:-60237 | None:intergenic |
| TTATTCCATGAAGAATTTCT+GGG | 0.471291 | tig0006809:-60271 | None:intergenic |
| GTCTGTGAATGAAGAAGATA+GGG | 0.475928 | tig0006809:+61417 | Msa1344610:CDS |
| ACAACAGACCCTGGAAGACT+TGG | 0.496923 | tig0006809:-60353 | None:intergenic |
| CAACACTTCCAAGTCTTCCA+GGG | 0.512123 | tig0006809:+60345 | Msa1344610:CDS |
| AAACTTCTATTGACACTTGG+AGG | 0.515017 | tig0006809:+62144 | Msa1344610:CDS |
| TAATCCTCAAGCAATGATGT+AGG | 0.515998 | tig0006809:-61361 | None:intergenic |
| AATCCTCAAGCAATGATGTA+GGG | 0.519413 | tig0006809:-61360 | None:intergenic |
| ACTATCACCTCCACAATATG+TGG | 0.522313 | tig0006809:+63009 | Msa1344610:CDS |
| CTCTAGACCCCTCTCAACAT+TGG | 0.523903 | tig0006809:-61467 | None:intergenic |
| TTGAAGGAATTGAAGAGGAG+AGG | 0.525995 | tig0006809:+61331 | Msa1344610:CDS |
| TGAAAGGGAAAGTTGAGAGA+GGG | 0.536654 | tig0006809:-60236 | None:intergenic |
| CATCTTCTAAGAGTGCATAA+GGG | 0.537509 | tig0006809:-63033 | None:intergenic |
| GCATAAGGGTCCACATATTG+TGG | 0.543635 | tig0006809:-63019 | None:intergenic |
| AGAGGGGTCTAGAGAATCAG+AGG | 0.544137 | tig0006809:+61476 | Msa1344610:CDS |
| GTCTAGAGAATCAGAGGGAA+CGG | 0.571889 | tig0006809:+61482 | Msa1344610:CDS |
| AGGGAAAGTTGAGAGAGGGT+TGG | 0.572433 | tig0006809:-60232 | None:intergenic |
| ATTCTCAGGAGAAGAGCCTC+CGG | 0.574850 | tig0006809:+61297 | Msa1344610:intron |
| GACCCCTACATCATTGCTTG+AGG | 0.575241 | tig0006809:+61357 | Msa1344610:CDS |
| ATGCACTCTTAGAAGATGAA+AGG | 0.586584 | tig0006809:+63038 | Msa1344610:CDS |
| GCTAAACTTCTATTGACACT+TGG | 0.589619 | tig0006809:+62141 | Msa1344610:CDS |
| AGTGTCAACCAATGTTGAGA+GGG | 0.601124 | tig0006809:+61459 | Msa1344610:CDS |
| GCCACGGTTATGAGGATCAA+CGG | 0.602581 | tig0006809:-62189 | None:intergenic |
| AGAACTACTACAACAGACCC+TGG | 0.607538 | tig0006809:-60362 | None:intergenic |
| CAGTGTCAACCAATGTTGAG+AGG | 0.610884 | tig0006809:+61458 | Msa1344610:CDS |
| GGATATCTCAGATAGCTCCT+CGG | 0.629394 | tig0006809:+63059 | Msa1344610:CDS |
| GTGACATCTTGCTTCCGTCG+TGG | 0.633182 | tig0006809:-62988 | None:intergenic |
| GCTGAACAGTGAAGGTCTTG+AGG | 0.634680 | tig0006809:+61513 | Msa1344610:CDS |
| ATCCTCAAGCAATGATGTAG+GGG | 0.635911 | tig0006809:-61359 | None:intergenic |
| CAACTATGGAGTTGATGAAG+AGG | 0.637558 | tig0006809:+61393 | Msa1344610:CDS |
| GATGCCAAGAATCAAAACAA+TGG | 0.639737 | tig0006809:+60388 | Msa1344610:CDS |
| TCTATGGCGCTGAACAGTGA+AGG | 0.641145 | tig0006809:+61505 | Msa1344610:CDS |
| GTCAATAGAAGTTTAGCTCG+AGG | 0.648431 | tig0006809:-62135 | None:intergenic |
| GAGGGGTCTAGAGAATCAGA+GGG | 0.670863 | tig0006809:+61477 | Msa1344610:CDS |
| TAAGGGTCCACATATTGTGG+AGG | 0.678073 | tig0006809:-63016 | None:intergenic |
| AGAGCTTACGAAGTAAAGAG+CGG | 0.697103 | tig0006809:-62220 | None:intergenic |
| GTGTCAACCAATGTTGAGAG+GGG | 0.698061 | tig0006809:+61460 | Msa1344610:CDS |
| ACCGTTGATCCTCATAACCG+TGG | 0.700978 | tig0006809:+62188 | Msa1344610:CDS |
| TCTGTGAATGAAGAAGATAG+GGG | 0.748330 | tig0006809:+61418 | Msa1344610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAAAACAATTTTTATCAA+CGG | - | tig0006809:60734-60753 | None:intergenic | 15.0% |
| !!! | TATATTTTGAGAATCAATTT+TGG | + | tig0006809:60970-60989 | Msa1344610:intron | 15.0% |
| !!! | TTTTACATACTTTCTAAATA+GGG | + | tig0006809:61968-61987 | Msa1344610:intron | 15.0% |
| !! | TATTTACTACAATACAAATA+AGG | - | tig0006809:61998-62017 | None:intergenic | 15.0% |
| !!! | AGAATATACATTTTTTCTAA+AGG | - | tig0006809:62471-62490 | None:intergenic | 15.0% |
| !! | TTTGTGAAAAAAACATTGTT+GGG | - | tig0006809:60302-60321 | None:intergenic | 20.0% |
| !!! | TTTTGTGAAAAAAACATTGT+TGG | - | tig0006809:60303-60322 | None:intergenic | 20.0% |
| !!! | TGTTGAAATTTTGAAACTTT+AGG | - | tig0006809:60330-60349 | None:intergenic | 20.0% |
| !!! | TTTTATGTATTGATGTTGAT+TGG | + | tig0006809:60567-60586 | Msa1344610:intron | 20.0% |
| !!! | AAATTGTTTTTTGAGTGAAT+TGG | + | tig0006809:60741-60760 | Msa1344610:intron | 20.0% |
| !!! | TGGTTATGTAAAATTGTTTT+TGG | + | tig0006809:60761-60780 | Msa1344610:intron | 20.0% |
| !!! | AAAAATTTCATGTTGTGTTT+TGG | + | tig0006809:61015-61034 | Msa1344610:intron | 20.0% |
| !! | TAAAGTGAAATATTTGAATG+TGG | + | tig0006809:61117-61136 | Msa1344610:intron | 20.0% |
| !!! | TATATAAAAAATCGCTGATT+TGG | + | tig0006809:61567-61586 | Msa1344610:intron | 20.0% |
| !!! | GTTTTACATACTTTCTAAAT+AGG | + | tig0006809:61967-61986 | Msa1344610:intron | 20.0% |
| !! | ATAAATATGTAAGTGATTTC+TGG | - | tig0006809:62097-62116 | None:intergenic | 20.0% |
| !! | TTACATATTTATCCATTTCA+GGG | + | tig0006809:62105-62124 | Msa1344610:intron | 20.0% |
| !! | ATAGTACACATTTAATGATA+TGG | + | tig0006809:62310-62329 | Msa1344610:intron | 20.0% |
| !! | TAATGTTAAACATAAACCAT+AGG | - | tig0006809:62704-62723 | None:intergenic | 20.0% |
| ! | TTATTCCATGAAGAATTTCT+GGG | - | tig0006809:60274-60293 | None:intergenic | 25.0% |
| ! | ATTATTCCATGAAGAATTTC+TGG | - | tig0006809:60275-60294 | None:intergenic | 25.0% |
| !!! | CTTTAGAGTAGTAATGATTT+TGG | + | tig0006809:60425-60444 | Msa1344610:intron | 25.0% |
| ! | TCCATCATCATACAAAAAAA+AGG | - | tig0006809:60513-60532 | None:intergenic | 25.0% |
| ! | CTTGAATATAAATACTCATG+AGG | + | tig0006809:60592-60611 | Msa1344610:intron | 25.0% |
| ! | TGATGAGTTCATATATTGTT+TGG | + | tig0006809:60622-60641 | Msa1344610:intron | 25.0% |
| !!! | AGAATTGATTTTGTCATGTT+TGG | - | tig0006809:60951-60970 | None:intergenic | 25.0% |
| !! | ACACAACATGAAATTTTTCT+AGG | - | tig0006809:61013-61032 | None:intergenic | 25.0% |
| ! | TCACTTTATCAAATTATCAC+AGG | - | tig0006809:61105-61124 | None:intergenic | 25.0% |
| !!! | TATTTTTGAAGGAATTGAAG+AGG | + | tig0006809:61326-61345 | Msa1344610:CDS | 25.0% |
| ! | TATTGAAGGAAAGTTAACAA+TGG | - | tig0006809:61544-61563 | None:intergenic | 25.0% |
| ! | ATAAACAACCAAATCAAGTT+TGG | - | tig0006809:61707-61726 | None:intergenic | 25.0% |
| ! | CTTACATATTTATCCATTTC+AGG | + | tig0006809:62104-62123 | Msa1344610:intron | 25.0% |
| !!! | ATATTCTAGCTTATAACAGT+TGG | + | tig0006809:62484-62503 | Msa1344610:intron | 25.0% |
| ! | TGAAGAATTTCTGGGAAAAT+TGG | - | tig0006809:60266-60285 | None:intergenic | 30.0% |
| ! | ATTTTCCCAGAAATTCTTCA+TGG | + | tig0006809:60266-60285 | Msa1344610:CDS | 30.0% |
| TGAAAAAAACATTGTTGGGT+TGG | - | tig0006809:60298-60317 | None:intergenic | 30.0% | |
| !!! | GCCTTTTTTTTGTATGATGA+TGG | + | tig0006809:60509-60528 | Msa1344610:intron | 30.0% |
| GAATATAAATACTCATGAGG+TGG | + | tig0006809:60595-60614 | Msa1344610:intron | 30.0% | |
| GAGTTCATATATTGTTTGGA+TGG | + | tig0006809:60626-60645 | Msa1344610:intron | 30.0% | |
| ACACTTATGTCCTTATAGTT+TGG | + | tig0006809:60669-60688 | Msa1344610:intron | 30.0% | |
| !!! | TGTTTACTTGGTGTATGTTT+TGG | + | tig0006809:60704-60723 | Msa1344610:intron | 30.0% |
| TGAAGCAAGTGATTTATGTT+CGG | + | tig0006809:60796-60815 | Msa1344610:intron | 30.0% | |
| TTCAAGCAGAATCAATTCTA+GGG | + | tig0006809:60899-60918 | Msa1344610:intron | 30.0% | |
| ! | TAACTAACTGTACCTTTTGA+TGG | + | tig0006809:61250-61269 | Msa1344610:intron | 30.0% |
| GAGAATCAATACAGTATTAG+AGG | - | tig0006809:61283-61302 | None:intergenic | 30.0% | |
| !! | CTAATACTGTATTGATTCTC+AGG | + | tig0006809:61283-61302 | Msa1344610:intron | 30.0% |
| TCCTTCAAAAATAATGACTC+CGG | - | tig0006809:61319-61338 | None:intergenic | 30.0% | |
| TAACATCTTGATCTGATGTT+TGG | + | tig0006809:61743-61762 | Msa1344610:intron | 30.0% | |
| ! | ATCTGATGTTTGGAACTTAA+AGG | + | tig0006809:61753-61772 | Msa1344610:intron | 30.0% |
| ! | TGTAAGCTGTATTTCTATGA+CGG | - | tig0006809:62056-62075 | None:intergenic | 30.0% |
| TAGATTACTTAACACGCAAA+CGG | - | tig0006809:62289-62308 | None:intergenic | 30.0% | |
| GTACACATTTAATGATATGG+TGG | + | tig0006809:62313-62332 | Msa1344610:intron | 30.0% | |
| TGAAGTGAGTAACAATTTGA+TGG | + | tig0006809:62374-62393 | Msa1344610:intron | 30.0% | |
| ACTAAGACTTCAGAACATTT+AGG | + | tig0006809:62428-62447 | Msa1344610:intron | 30.0% | |
| !!! | ATTTTTTCTAAAGGAAGCTG+AGG | - | tig0006809:62462-62481 | None:intergenic | 30.0% |
| ! | TTGATTTTGTGTCTGTTGTT+TGG | + | tig0006809:62558-62577 | Msa1344610:intron | 30.0% |
| ! | GTTTTTGTGCATTCAATTCT+TGG | + | tig0006809:62617-62636 | Msa1344610:intron | 30.0% |
| ACATAAACCATAGGATAGAT+GGG | - | tig0006809:62695-62714 | None:intergenic | 30.0% | |
| AACATAAACCATAGGATAGA+TGG | - | tig0006809:62696-62715 | None:intergenic | 30.0% | |
| ! | ATAGTCTTCAGTTTTCAACA+GGG | - | tig0006809:62766-62785 | None:intergenic | 30.0% |
| ! | AATAGTCTTCAGTTTTCAAC+AGG | - | tig0006809:62767-62786 | None:intergenic | 30.0% |
| TTTGTGCTTGTATGAAATAG+TGG | + | tig0006809:62884-62903 | Msa1344610:intron | 30.0% | |
| CAACGTTCTATATTACATGA+AGG | - | tig0006809:62922-62941 | None:intergenic | 30.0% | |
| CATGTAATATAGAACGTTGA+TGG | + | tig0006809:62923-62942 | Msa1344610:intron | 30.0% | |
| !!! | CTGTTTTTGTTGCAGTATTT+CGG | + | tig0006809:62953-62972 | Msa1344610:intron | 30.0% |
| GGGAAAATTGGATTGTGAAA+GGG | - | tig0006809:60254-60273 | None:intergenic | 35.0% | |
| TGGGAAAATTGGATTGTGAA+AGG | - | tig0006809:60255-60274 | None:intergenic | 35.0% | |
| GATGCCAAGAATCAAAACAA+TGG | + | tig0006809:60388-60407 | Msa1344610:CDS | 35.0% | |
| !!! | CTTGCCATTGTTTTGATTCT+TGG | - | tig0006809:60395-60414 | None:intergenic | 35.0% |
| ACATGAAGGACCAAACTATA+AGG | - | tig0006809:60682-60701 | None:intergenic | 35.0% | |
| !! | TCCTTCATGTGTTGTTTACT+TGG | + | tig0006809:60692-60711 | Msa1344610:intron | 35.0% |
| ACCAAGTAAACAACACATGA+AGG | - | tig0006809:60696-60715 | None:intergenic | 35.0% | |
| CTTCAAGCAGAATCAATTCT+AGG | + | tig0006809:60898-60917 | Msa1344610:intron | 35.0% | |
| TCAAGCAGAATCAATTCTAG+GGG | + | tig0006809:60900-60919 | Msa1344610:intron | 35.0% | |
| TTCTAGGTTTCACTTCTAGA+GGG | - | tig0006809:60997-61016 | None:intergenic | 35.0% | |
| TTTCTAGGTTTCACTTCTAG+AGG | - | tig0006809:60998-61017 | None:intergenic | 35.0% | |
| ATTGATACAACACCAACACA+TGG | - | tig0006809:61143-61162 | None:intergenic | 35.0% | |
| !! | TGTTGGTGTTGTATCAATGT+TGG | + | tig0006809:61145-61164 | Msa1344610:intron | 35.0% |
| ! | TTTCAGATTGAAGGTGTGTT+CGG | - | tig0006809:61191-61210 | None:intergenic | 35.0% |
| ! | ACACCTTCAATCTGAAATGT+TGG | + | tig0006809:61194-61213 | Msa1344610:intron | 35.0% |
| TTCAAAAATAATGACTCCGG+AGG | - | tig0006809:61316-61335 | None:intergenic | 35.0% | |
| !!! | TCCGGAGTCATTATTTTTGA+AGG | + | tig0006809:61315-61334 | Msa1344610:CDS | 35.0% |
| AATCCTCAAGCAATGATGTA+GGG | - | tig0006809:61363-61382 | None:intergenic | 35.0% | |
| TAATCCTCAAGCAATGATGT+AGG | - | tig0006809:61364-61383 | None:intergenic | 35.0% | |
| GATTACAAGCAAACCAACTA+TGG | + | tig0006809:61379-61398 | Msa1344610:CDS | 35.0% | |
| GTCTGTGAATGAAGAAGATA+GGG | + | tig0006809:61417-61436 | Msa1344610:CDS | 35.0% | |
| TCTGTGAATGAAGAAGATAG+GGG | + | tig0006809:61418-61437 | Msa1344610:CDS | 35.0% | |
| !! | TTGACACTGTTTTTCTGTTC+GGG | - | tig0006809:61447-61466 | None:intergenic | 35.0% |
| !! | GTTGACACTGTTTTTCTGTT+CGG | - | tig0006809:61448-61467 | None:intergenic | 35.0% |
| TCAAACCACCAAACTTGATT+TGG | + | tig0006809:61696-61715 | Msa1344610:intron | 35.0% | |
| AACAACCAAATCAAGTTTGG+TGG | - | tig0006809:61704-61723 | None:intergenic | 35.0% | |
| ! | TTGGAACTTAAAGGTTCTGA+TGG | + | tig0006809:61762-61781 | Msa1344610:intron | 35.0% |
| ATGAGAATAGAGTTCTTCAG+CGG | - | tig0006809:61859-61878 | None:intergenic | 35.0% | |
| TATTTATCCATTTCAGGGCT+TGG | + | tig0006809:62110-62129 | Msa1344610:intron | 35.0% | |
| GCTAAACTTCTATTGACACT+TGG | + | tig0006809:62141-62160 | Msa1344610:CDS | 35.0% | |
| AAACTTCTATTGACACTTGG+AGG | + | tig0006809:62144-62163 | Msa1344610:CDS | 35.0% | |
| AAAAAAATGCCACGGTTATG+AGG | - | tig0006809:62200-62219 | None:intergenic | 35.0% | |
| ACAGAACACATTACATTAGC+TGG | - | tig0006809:62254-62273 | None:intergenic | 35.0% | |
| !! | TCTTAGTTTGCCAATTGAGT+TGG | - | tig0006809:62415-62434 | None:intergenic | 35.0% |
| ! | ATTTTCTGTTTGCGTCATGT+TGG | + | tig0006809:62802-62821 | Msa1344610:intron | 35.0% |
| TGAAGAATGAATGAGGATTG+AGG | - | tig0006809:62853-62872 | None:intergenic | 35.0% | |
| CTCAATGTGAAGAATGAATG+AGG | - | tig0006809:62860-62879 | None:intergenic | 35.0% | |
| !! | CTTGTATGAAATAGTGGACA+TGG | + | tig0006809:62890-62909 | Msa1344610:intron | 35.0% |
| ! | CATCTTCTAAGAGTGCATAA+GGG | - | tig0006809:63036-63055 | None:intergenic | 35.0% |
| ! | TCATCTTCTAAGAGTGCATA+AGG | - | tig0006809:63037-63056 | None:intergenic | 35.0% |
| ATGCACTCTTAGAAGATGAA+AGG | + | tig0006809:63038-63057 | Msa1344610:CDS | 35.0% | |
| TGAAAGGGAAAGTTGAGAGA+GGG | - | tig0006809:60239-60258 | None:intergenic | 40.0% | |
| ! | TCTAGGTTTCACTTCTAGAG+GGG | - | tig0006809:60996-61015 | None:intergenic | 40.0% |
| TTGAATCGCTCACACAAACA+CGG | + | tig0006809:61057-61076 | Msa1344610:intron | 40.0% | |
| ATTTGAATGTGGCCATGTGT+TGG | + | tig0006809:61128-61147 | Msa1344610:intron | 40.0% | |
| GCACCAACATTTCAGATTGA+AGG | - | tig0006809:61200-61219 | None:intergenic | 40.0% | |
| !! | GAAATGTTGGTGCTACATGT+AGG | + | tig0006809:61207-61226 | Msa1344610:intron | 40.0% |
| TTGAAGGAATTGAAGAGGAG+AGG | + | tig0006809:61331-61350 | Msa1344610:CDS | 40.0% | |
| ATCCTCAAGCAATGATGTAG+GGG | - | tig0006809:61362-61381 | None:intergenic | 40.0% | |
| CTCTTCATCAACTCCATAGT+TGG | - | tig0006809:61395-61414 | None:intergenic | 40.0% | |
| !! | CAACTATGGAGTTGATGAAG+AGG | + | tig0006809:61393-61412 | Msa1344610:CDS | 40.0% |
| CGTCTGTGAATGAAGAAGAT+AGG | + | tig0006809:61416-61435 | Msa1344610:CDS | 40.0% | |
| AGTGTCAACCAATGTTGAGA+GGG | + | tig0006809:61459-61478 | Msa1344610:CDS | 40.0% | |
| GCATTGTTTGTTCTGCTCTA+AGG | + | tig0006809:61620-61639 | Msa1344610:intron | 40.0% | |
| TACAGCTTACATGCTTCCTA+TGG | + | tig0006809:62065-62084 | Msa1344610:intron | 40.0% | |
| !! | TGATTTCTGGTGACTACCAT+AGG | - | tig0006809:62084-62103 | None:intergenic | 40.0% |
| ! | GTCAATAGAAGTTTAGCTCG+AGG | - | tig0006809:62138-62157 | None:intergenic | 40.0% |
| ACTTGGAGGAACATTCTTCT+TGG | + | tig0006809:62158-62177 | Msa1344610:CDS | 40.0% | |
| GGAACATTCTTCTTGGCATT+TGG | + | tig0006809:62165-62184 | Msa1344610:CDS | 40.0% | |
| AAGAGCGGAAAAAAATGCCA+CGG | - | tig0006809:62208-62227 | None:intergenic | 40.0% | |
| AGAGCTTACGAAGTAAAGAG+CGG | - | tig0006809:62223-62242 | None:intergenic | 40.0% | |
| TACTTAACACGCAAACGGTA+CGG | - | tig0006809:62284-62303 | None:intergenic | 40.0% | |
| CAGAACCTAACCAACTCAAT+TGG | + | tig0006809:62402-62421 | Msa1344610:intron | 40.0% | |
| !! | GTTTGCCAATTGAGTTGGTT+AGG | - | tig0006809:62410-62429 | None:intergenic | 40.0% |
| TTGTCTTCCCATCTATCCTA+TGG | + | tig0006809:62685-62704 | Msa1344610:intron | 40.0% | |
| ACTATCACCTCCACAATATG+TGG | + | tig0006809:63009-63028 | Msa1344610:CDS | 40.0% | |
| GTGAAAGGGAAAGTTGAGAG+AGG | - | tig0006809:60240-60259 | None:intergenic | 45.0% | |
| TCAACACTTCCAAGTCTTCC+AGG | + | tig0006809:60344-60363 | Msa1344610:CDS | 45.0% | |
| CAACACTTCCAAGTCTTCCA+GGG | + | tig0006809:60345-60364 | Msa1344610:CDS | 45.0% | |
| AGAACTACTACAACAGACCC+TGG | - | tig0006809:60365-60384 | None:intergenic | 45.0% | |
| ! | AGAGGTGTGAAGCCATCAAA+AGG | - | tig0006809:61265-61284 | None:intergenic | 45.0% |
| CAGTGTCAACCAATGTTGAG+AGG | + | tig0006809:61458-61477 | Msa1344610:CDS | 45.0% | |
| GTGTCAACCAATGTTGAGAG+GGG | + | tig0006809:61460-61479 | Msa1344610:CDS | 45.0% | |
| GTCTAGAGAATCAGAGGGAA+CGG | + | tig0006809:61482-61501 | Msa1344610:CDS | 45.0% | |
| TAAGGGTCCACATATTGTGG+AGG | - | tig0006809:63019-63038 | None:intergenic | 45.0% | |
| GCATAAGGGTCCACATATTG+TGG | - | tig0006809:63022-63041 | None:intergenic | 45.0% | |
| GGATATCTCAGATAGCTCCT+CGG | + | tig0006809:63059-63078 | Msa1344610:CDS | 45.0% | |
| !!! | TTTTTTATATATATTATTGA+AGG | - | tig0006809:61558-61577 | None:intergenic | 5.0% |
| AGGGAAAGTTGAGAGAGGGT+TGG | - | tig0006809:60235-60254 | None:intergenic | 50.0% | |
| ACAACAGACCCTGGAAGACT+TGG | - | tig0006809:60356-60375 | None:intergenic | 50.0% | |
| ATTCTCAGGAGAAGAGCCTC+CGG | + | tig0006809:61297-61316 | Msa1344610:intron | 50.0% | |
| GACCCCTACATCATTGCTTG+AGG | + | tig0006809:61357-61376 | Msa1344610:CDS | 50.0% | |
| CTCTAGACCCCTCTCAACAT+TGG | - | tig0006809:61470-61489 | None:intergenic | 50.0% | |
| AGAGGGGTCTAGAGAATCAG+AGG | + | tig0006809:61476-61495 | Msa1344610:CDS | 50.0% | |
| GAGGGGTCTAGAGAATCAGA+GGG | + | tig0006809:61477-61496 | Msa1344610:CDS | 50.0% | |
| GAATCAGAGGGAACGGTCTA+TGG | + | tig0006809:61489-61508 | Msa1344610:CDS | 50.0% | |
| ! | TCTATGGCGCTGAACAGTGA+AGG | + | tig0006809:61505-61524 | Msa1344610:CDS | 50.0% |
| GCTGAACAGTGAAGGTCTTG+AGG | + | tig0006809:61513-61532 | Msa1344610:CDS | 50.0% | |
| ACCGTTGATCCTCATAACCG+TGG | + | tig0006809:62188-62207 | Msa1344610:CDS | 50.0% | |
| GCCACGGTTATGAGGATCAA+CGG | - | tig0006809:62192-62211 | None:intergenic | 50.0% | |
| !! | GGACCAAGTTTTGTCCACGA+CGG | + | tig0006809:62974-62993 | Msa1344610:CDS | 50.0% |
| CTTCCGTCGTGGACAAAACT+TGG | - | tig0006809:62980-62999 | None:intergenic | 50.0% | |
| ! | CGAGGTACCAAGCCCTGAAA+TGG | - | tig0006809:62120-62139 | None:intergenic | 55.0% |
| GTGACATCTTGCTTCCGTCG+TGG | - | tig0006809:62991-63010 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006809 | gene | 60217 | 63090 | 60217 | ID=Msa1344610;Name=Msa1344610 |
| tig0006809 | mRNA | 60217 | 63090 | 60217 | ID=Msa1344610-mRNA-1;Parent=Msa1344610;Name=Msa1344610-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|0|0|1|1|1|4|0|217 |
| tig0006809 | exon | 60217 | 60409 | 60217 | ID=Msa1344610-mRNA-1:exon:4601;Parent=Msa1344610-mRNA-1 |
| tig0006809 | exon | 61305 | 61534 | 61305 | ID=Msa1344610-mRNA-1:exon:4602;Parent=Msa1344610-mRNA-1 |
| tig0006809 | exon | 62126 | 62233 | 62126 | ID=Msa1344610-mRNA-1:exon:4603;Parent=Msa1344610-mRNA-1 |
| tig0006809 | exon | 62968 | 63090 | 62968 | ID=Msa1344610-mRNA-1:exon:4604;Parent=Msa1344610-mRNA-1 |
| tig0006809 | CDS | 60217 | 60409 | 60217 | ID=Msa1344610-mRNA-1:cds;Parent=Msa1344610-mRNA-1 |
| tig0006809 | CDS | 61305 | 61534 | 61305 | ID=Msa1344610-mRNA-1:cds;Parent=Msa1344610-mRNA-1 |
| tig0006809 | CDS | 62126 | 62233 | 62126 | ID=Msa1344610-mRNA-1:cds;Parent=Msa1344610-mRNA-1 |
| tig0006809 | CDS | 62968 | 63090 | 62968 | ID=Msa1344610-mRNA-1:cds;Parent=Msa1344610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
