Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100640 | XP_003588703.1 | 96.028 | 428 | 17 | 0 | 1 | 428 | 1 | 428 | 0.0 | 849 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100640 | sp|H1ZZA4|AUAG_STIAU | 27.698 | 278 | 163 | 10 | 110 | 383 | 105 | 348 | 3.90e-18 | 89.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100640 | G7I6C9 | 96.028 | 428 | 17 | 0 | 1 | 428 | 1 | 428 | 0.0 | 849 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055410 | Msa0100640 | 0.822265 | 2.598259e-53 | -8.615850e-47 |
| Msa0100640 | Msa0183620 | 0.803536 | 3.326187e-49 | -8.615850e-47 |
| Msa0100640 | Msa0207000 | 0.817925 | 2.560692e-52 | -8.615850e-47 |
| Msa0100640 | Msa0376510 | 0.807073 | 6.039139e-50 | -8.615850e-47 |
| Msa0100640 | Msa0425050 | 0.819028 | 1.439682e-52 | -8.615850e-47 |
| Msa0100640 | Msa0430620 | 0.819867 | 9.268749e-53 | -8.615850e-47 |
| Msa0100640 | Msa0436460 | 0.805442 | 1.332005e-49 | -8.615850e-47 |
| Msa0100640 | Msa0577940 | -0.802613 | 5.162588e-49 | -8.615850e-47 |
| Msa0100640 | Msa0620810 | 0.803124 | 4.049724e-49 | -8.615850e-47 |
| Msa0100640 | Msa0657670 | 0.803968 | 2.705565e-49 | -8.615850e-47 |
| Msa0100640 | Msa0946320 | 0.814514 | 1.482267e-51 | -8.615850e-47 |
| Msa0100640 | Msa1018790 | 0.812721 | 3.677046e-51 | -8.615850e-47 |
| Msa0100640 | Msa1125780 | 0.800284 | 1.548837e-48 | -8.615850e-47 |
| Msa0100640 | Msa1125950 | 0.803793 | 2.942807e-49 | -8.615850e-47 |
| Msa0100640 | Msa1171340 | 0.803364 | 3.611665e-49 | -8.615850e-47 |
| Msa0100640 | Msa1171690 | 0.807489 | 4.930559e-50 | -8.615850e-47 |
| Msa0100640 | Msa1210770 | 0.806904 | 6.557802e-50 | -8.615850e-47 |
| Msa0100640 | Msa1249870 | 0.804572 | 2.025371e-49 | -8.615850e-47 |
| Msa0100640 | Msa1379990 | 0.823845 | 1.112203e-53 | -8.615850e-47 |
| Msa0100640 | Msa1464560 | 0.810601 | 1.062913e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100640 | MtrunA17_Chr1g0148881 | 96.028 | 428 | 17 | 0 | 1 | 428 | 1 | 428 | 0.0 | 849 |
| Msa0100640 | MtrunA17_Chr1g0148911 | 75.301 | 166 | 41 | 0 | 263 | 428 | 2 | 167 | 2.99e-85 | 258 |
| Msa0100640 | MtrunA17_Chr1g0148891 | 75.455 | 110 | 26 | 1 | 1 | 110 | 1 | 109 | 1.36e-48 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100640 | AT5G11330.1 | 65.459 | 414 | 133 | 3 | 6 | 419 | 4 | 407 | 0.0 | 552 |
| Msa0100640 | AT5G11330.2 | 66.932 | 251 | 82 | 1 | 6 | 256 | 4 | 253 | 2.74e-122 | 356 |
Find 117 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCTTGGGGAAGATATTC+TGG | 0.233803 | 1_3:-7093500 | Msa0100640:CDS |
| GGATAAATGTTGTTCATTTA+CGG | 0.263608 | 1_3:+7092960 | None:intergenic |
| CTCTTCAAATCATTCAATCT+TGG | 0.267009 | 1_3:-7095743 | Msa0100640:CDS |
| TAATTTGACAATTAAGATTA+TGG | 0.267676 | 1_3:-7093065 | Msa0100640:three_prime_UTR |
| AAGAAGGCATACCCTGATTT+AGG | 0.281482 | 1_3:-7094495 | Msa0100640:CDS |
| ACTCATCACATTAATACTTT+TGG | 0.291697 | 1_3:+7095960 | None:intergenic |
| CTCCTCTTTCCTTGCTGACT+TGG | 0.294260 | 1_3:+7093224 | None:intergenic |
| TTGTCATGTTTGTGCTTCTA+AGG | 0.298117 | 1_3:+7093427 | None:intergenic |
| AACAATCTTACCTTTACTTC+AGG | 0.303617 | 1_3:+7094372 | None:intergenic |
| GATAAATGTTGTTCATTTAC+GGG | 0.324343 | 1_3:+7092961 | None:intergenic |
| TACAGACCTTAGTTTAAAAT+CGG | 0.326296 | 1_3:+7094950 | None:intergenic |
| GGATCAAAAGGATCTCTATC+AGG | 0.331457 | 1_3:+7093246 | None:intergenic |
| CTAAGGTAGTGAGGCGTAGT+AGG | 0.337106 | 1_3:+7093444 | None:intergenic |
| AGTCCTACTGGTGCAGGTCT+TGG | 0.342814 | 1_3:-7095780 | Msa0100640:CDS |
| GGAGAGGTTATTGAGATTGT+AGG | 0.348917 | 1_3:-7095029 | Msa0100640:CDS |
| CCTCCAACAATCACTGCTTT+TGG | 0.355115 | 1_3:+7095894 | None:intergenic |
| ATAGTGAGAAGAAGGTTAAT+TGG | 0.367261 | 1_3:-7095226 | Msa0100640:CDS |
| AAGGCTAAAGTTGTGAAAAC+TGG | 0.371063 | 1_3:-7095050 | Msa0100640:CDS |
| TTTCCATGTTGCAAATGAAA+AGG | 0.377089 | 1_3:-7095087 | Msa0100640:CDS |
| TAGGCAAATGCATAGAGAAA+TGG | 0.381893 | 1_3:-7093386 | Msa0100640:CDS |
| CTTGCTGACTTGGGATCAAA+AGG | 0.384587 | 1_3:+7093234 | None:intergenic |
| AAACTTCAGAGCAGCACATT+GGG | 0.385934 | 1_3:-7095180 | Msa0100640:CDS |
| TGCCCTTATCTTAGCTGGTT+GGG | 0.389461 | 1_3:-7095844 | Msa0100640:CDS |
| CTTACCTTTACTTCAGGCTC+TGG | 0.395657 | 1_3:+7094378 | None:intergenic |
| TCCTCTTTCCTTGCTGACTT+GGG | 0.399593 | 1_3:+7093225 | None:intergenic |
| ATATTAGATGCAGCGGTGTT+AGG | 0.401522 | 1_3:-7093405 | Msa0100640:CDS |
| CAGGCTATTGTGCTTGGAGA+GGG | 0.406475 | 1_3:-7094566 | Msa0100640:CDS |
| TGAAAAGCTTGAATCGGCTT+TGG | 0.407533 | 1_3:-7093358 | Msa0100640:CDS |
| AAAACCACCTCCCCTCCAAC+TGG | 0.411663 | 1_3:-7095804 | Msa0100640:CDS |
| ACTTCCAGTTGGAGGGGAGG+TGG | 0.419250 | 1_3:+7095800 | None:intergenic |
| AGCAAGGAAAGAGGAGTGTC+AGG | 0.422711 | 1_3:-7093217 | Msa0100640:CDS |
| AGAACTTGCTTGGAAGTAAC+TGG | 0.427168 | 1_3:+7093312 | None:intergenic |
| CATATATGATAGTGATCCCT+TGG | 0.433672 | 1_3:-7093514 | Msa0100640:CDS |
| AGGCAAATGCATAGAGAAAT+GGG | 0.438389 | 1_3:-7093385 | Msa0100640:CDS |
| TTGTACTTTGACTTGGCCTC+AGG | 0.443786 | 1_3:-7094465 | Msa0100640:CDS |
| GCACATTGGGGTGATCTTCA+TGG | 0.447172 | 1_3:-7095167 | Msa0100640:CDS |
| GCACATGCCCTTATCTTAGC+TGG | 0.449723 | 1_3:-7095849 | Msa0100640:CDS |
| ACTTTAGCCTTTACAATGAC+AGG | 0.452803 | 1_3:+7095062 | None:intergenic |
| CCTCCAACTGGAAGTCCTAC+TGG | 0.459416 | 1_3:-7095792 | Msa0100640:CDS |
| TTCATGACCTTTGCTAACTC+AGG | 0.460263 | 1_3:+7093564 | None:intergenic |
| CGGTCGCATAAAACAAGGTC+TGG | 0.461955 | 1_3:-7093274 | Msa0100640:CDS |
| ATATATGATAGTGATCCCTT+GGG | 0.464445 | 1_3:-7093513 | Msa0100640:CDS |
| ATGCCCTTATCTTAGCTGGT+TGG | 0.465754 | 1_3:-7095845 | Msa0100640:CDS |
| CATCCCAACCAGCTAAGATA+AGG | 0.467240 | 1_3:+7095841 | None:intergenic |
| ACACTAATAAGGCGATTGCC+TGG | 0.470272 | 1_3:-7093094 | Msa0100640:three_prime_UTR |
| ATTGAATGATTTGAAGAGAG+AGG | 0.470374 | 1_3:+7095748 | None:intergenic |
| TGCCTTCTTGATACCTGTGA+TGG | 0.479221 | 1_3:+7094509 | None:intergenic |
| AAACCAAAAGCAGTGATTGT+TGG | 0.479656 | 1_3:-7095897 | Msa0100640:CDS |
| ATTGTTGGAGGTAGCATTGG+AGG | 0.480364 | 1_3:-7095882 | Msa0100640:CDS |
| CCTTGCATGAAGAACTTGCT+TGG | 0.482633 | 1_3:+7093302 | None:intergenic |
| GGTATTCAGGCTATTGTGCT+TGG | 0.482760 | 1_3:-7094572 | Msa0100640:CDS |
| TTCCATGTTGCAAATGAAAA+GGG | 0.483954 | 1_3:-7095086 | Msa0100640:CDS |
| ATTCTGGGACAATGTGGTAT+TGG | 0.484504 | 1_3:-7093484 | Msa0100640:CDS |
| ACAGACCTTAGTTTAAAATC+GGG | 0.487719 | 1_3:+7094951 | None:intergenic |
| TTGAATGATTTGAAGAGAGA+GGG | 0.490073 | 1_3:+7095749 | None:intergenic |
| GATTTGCTTGTTGCTGCAGA+TGG | 0.492918 | 1_3:-7095005 | Msa0100640:CDS |
| GGAAGCTGAAAAGCTTGAAT+CGG | 0.497109 | 1_3:-7093364 | Msa0100640:CDS |
| GTGATTGTTGGAGGTAGCAT+TGG | 0.503861 | 1_3:-7095885 | Msa0100640:CDS |
| TCCCTTGGGGAAGATATTCT+GGG | 0.512466 | 1_3:-7093499 | Msa0100640:CDS |
| ATCCCAACCAGCTAAGATAA+GGG | 0.514118 | 1_3:+7095842 | None:intergenic |
| TCATCCACTAACTATTGATC+AGG | 0.514137 | 1_3:-7095685 | Msa0100640:intron |
| TTACTTGAAATTGTAAAAGT+CGG | 0.514231 | 1_3:-7092994 | Msa0100640:three_prime_UTR |
| GTGGATGAGTGGTGTTGTGT+AGG | 0.518746 | 1_3:+7095700 | None:intergenic |
| ATTGTCAAATTAAACTGCCC+AGG | 0.519572 | 1_3:+7093076 | None:intergenic |
| TCAGCCAGAGCCTGAAGTAA+AGG | 0.521249 | 1_3:-7094382 | Msa0100640:intron |
| ACTGGAAGTCCTACTGGTGC+AGG | 0.521845 | 1_3:-7095786 | Msa0100640:CDS |
| TTGACCTGATCAATAGTTAG+TGG | 0.522357 | 1_3:+7095681 | None:intergenic |
| TGGGACAATGTGGTATTGGT+AGG | 0.524425 | 1_3:-7093480 | Msa0100640:CDS |
| TAAAATCGGGGAGATATTTG+CGG | 0.525552 | 1_3:+7094964 | None:intergenic |
| TAAACTTCAGAGCAGCACAT+TGG | 0.527574 | 1_3:-7095181 | Msa0100640:CDS |
| TCATATATGAAATTTAAGAA+AGG | 0.530399 | 1_3:+7093528 | None:intergenic |
| AAAGTATTAATGTGATGAGT+AGG | 0.531741 | 1_3:-7095957 | Msa0100640:five_prime_UTR |
| GAAGAGAAGATGGTTGGAGA+AGG | 0.532970 | 1_3:-7095924 | Msa0100640:exon |
| CACTAATAAGGCGATTGCCT+GGG | 0.534060 | 1_3:-7093093 | Msa0100640:three_prime_UTR |
| GTTCTTCATGCAAGGCGTCT+CGG | 0.536153 | 1_3:-7093294 | Msa0100640:CDS |
| TCAGGCTATTGTGCTTGGAG+AGG | 0.538211 | 1_3:-7094567 | Msa0100640:CDS |
| CCAAAAGCAGTGATTGTTGG+AGG | 0.538377 | 1_3:-7095894 | Msa0100640:CDS |
| CCAAGCAAGTTCTTCATGCA+AGG | 0.542002 | 1_3:-7093302 | Msa0100640:CDS |
| TGAATTGAAGAGAAGATGGT+TGG | 0.542032 | 1_3:-7095930 | Msa0100640:exon |
| AAAATGCTTGTACTTTGACT+TGG | 0.543757 | 1_3:-7094472 | Msa0100640:CDS |
| GGTAACTGATAGTGAGAAGA+AGG | 0.544832 | 1_3:-7095234 | Msa0100640:CDS |
| TAAGGTAGTGAGGCGTAGTA+GGG | 0.552562 | 1_3:+7093445 | None:intergenic |
| AAAGGGTCCTGTCATTGTAA+AGG | 0.554399 | 1_3:-7095069 | Msa0100640:CDS |
| CCAGTAGGACTTCCAGTTGG+AGG | 0.556794 | 1_3:+7095792 | None:intergenic |
| GGGACAATGTGGTATTGGTA+GGG | 0.556947 | 1_3:-7093479 | Msa0100640:CDS |
| TCTTCTCACTATCAGTTACC+AGG | 0.558524 | 1_3:+7095237 | None:intergenic |
| TGATTGAATTGAAGAGAAGA+TGG | 0.560883 | 1_3:-7095934 | Msa0100640:exon |
| AGGACTTCCAGTTGGAGGGG+AGG | 0.561460 | 1_3:+7095797 | None:intergenic |
| CAGTAGGACTTCCAGTTGGA+GGG | 0.570665 | 1_3:+7095793 | None:intergenic |
| AGGCTATTGTGCTTGGAGAG+GGG | 0.575792 | 1_3:-7094565 | Msa0100640:CDS |
| TCCCAAGTCAGCAAGGAAAG+AGG | 0.577272 | 1_3:-7093226 | Msa0100640:CDS |
| GTCCCAGAATATCTTCCCCA+AGG | 0.590642 | 1_3:+7093497 | None:intergenic |
| TTGTTGGAGGTAGCATTGGA+GGG | 0.595560 | 1_3:-7095881 | Msa0100640:CDS |
| GGACAATGTGGTATTGGTAG+GGG | 0.607883 | 1_3:-7093478 | Msa0100640:CDS |
| AGTAGGACTTCCAGTTGGAG+GGG | 0.611392 | 1_3:+7095794 | None:intergenic |
| GTGTTGTGTAGGAATTGTGG+TGG | 0.615782 | 1_3:+7095711 | None:intergenic |
| CATGACAATATTAGATGCAG+CGG | 0.616705 | 1_3:-7093412 | Msa0100640:CDS |
| CGTCTCGGTCGCATAAAACA+AGG | 0.618626 | 1_3:-7093279 | Msa0100640:CDS |
| GATCAAAAGGATCTCTATCA+GGG | 0.619750 | 1_3:+7093247 | None:intergenic |
| AACCATCACAGGTATCAAGA+AGG | 0.619798 | 1_3:-7094511 | Msa0100640:CDS |
| GTGGTGTTGTGTAGGAATTG+TGG | 0.620083 | 1_3:+7095708 | None:intergenic |
| TCCCAGAATATCTTCCCCAA+GGG | 0.620502 | 1_3:+7093498 | None:intergenic |
| GAGGATTCAGAAACCATCAC+AGG | 0.640014 | 1_3:-7094522 | Msa0100640:CDS |
| ATGGATTCCTGAGTTAGCAA+AGG | 0.642615 | 1_3:-7093571 | Msa0100640:CDS |
| TAAAGTTGTGAAAACTGGAG+AGG | 0.643282 | 1_3:-7095045 | Msa0100640:CDS |
| TTTGTGCTTCTAAGGTAGTG+AGG | 0.645723 | 1_3:+7093435 | None:intergenic |
| AACTTCAGAGCAGCACATTG+GGG | 0.652616 | 1_3:-7095179 | Msa0100640:CDS |
| CAGACCTTAGTTTAAAATCG+GGG | 0.652872 | 1_3:+7094952 | None:intergenic |
| GTAACAGAAGCAAATGACAA+AGG | 0.656279 | 1_3:+7093156 | None:intergenic |
| AGTCCAAGACCTGCACCAGT+AGG | 0.656699 | 1_3:+7095777 | None:intergenic |
| ATCAATAGTTAGTGGATGAG+TGG | 0.658849 | 1_3:+7095689 | None:intergenic |
| GCACCAGTAGGACTTCCAGT+TGG | 0.664365 | 1_3:+7095789 | None:intergenic |
| GAAGATATTCTGGGACAATG+TGG | 0.667327 | 1_3:-7093490 | Msa0100640:CDS |
| TAACACACTGTGTGTACCTG+AGG | 0.676605 | 1_3:+7094449 | None:intergenic |
| AAAGGTCATGAAAGAAACGA+AGG | 0.680367 | 1_3:-7093553 | Msa0100640:CDS |
| AATCGGGGAGATATTTGCGG+CGG | 0.687192 | 1_3:+7094967 | None:intergenic |
| TATATGATAGTGATCCCTTG+GGG | 0.715921 | 1_3:-7093512 | Msa0100640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAAGATAAAGAGA+TGG | + | chr1_3:7093281-7093300 | None:intergenic | 15.0% |
| !! | TAATTATTCTAATGATTTGA+CGG | + | chr1_3:7093514-7093533 | None:intergenic | 15.0% |
| !! | ATTAAATCCATAAAAGAAAA+GGG | + | chr1_3:7094026-7094045 | None:intergenic | 15.0% |
| !! | AATTAAATCCATAAAAGAAA+AGG | + | chr1_3:7094027-7094046 | None:intergenic | 15.0% |
| !!! | CAAATATTTTTATGATCAAA+CGG | + | chr1_3:7094085-7094104 | None:intergenic | 15.0% |
| !! | TTATCAATAAAGAAAAATAG+TGG | + | chr1_3:7095188-7095207 | None:intergenic | 15.0% |
| !! | TCATATATGAAATTTAAGAA+AGG | + | chr1_3:7095405-7095424 | None:intergenic | 15.0% |
| !! | TAATTTGACAATTAAGATTA+TGG | - | chr1_3:7095865-7095884 | Msa0100640:CDS | 15.0% |
| !!! | AGTTAATCTCTTCTTTTATA+TGG | - | chr1_3:7094303-7094322 | Msa0100640:intron | 20.0% |
| !!! | ATCCAATTGAGTTTTTTATT+CGG | + | chr1_3:7094516-7094535 | None:intergenic | 20.0% |
| !! | ATAAAAAACTCAATTGGATT+TGG | - | chr1_3:7094517-7094536 | Msa0100640:CDS | 20.0% |
| !! | CAATTATGATAACTGTTATT+GGG | + | chr1_3:7094600-7094619 | None:intergenic | 20.0% |
| !! | AAAAATCATTTAAGCAAATG+AGG | + | chr1_3:7094634-7094653 | None:intergenic | 20.0% |
| !!! | TAGTTTTTGTTACACTAATA+AGG | - | chr1_3:7095825-7095844 | Msa0100640:CDS | 20.0% |
| !! | TTACTTGAAATTGTAAAAGT+CGG | - | chr1_3:7095936-7095955 | Msa0100640:exon | 20.0% |
| !! | ACTCATCACATTAATACTTT+TGG | + | chr1_3:7092973-7092992 | None:intergenic | 25.0% |
| !! | AAAGTATTAATGTGATGAGT+AGG | - | chr1_3:7092973-7092992 | Msa0100640:three_prime_UTR | 25.0% |
| ! | AATAAAAGATAAAGAGATGG+TGG | + | chr1_3:7093278-7093297 | None:intergenic | 25.0% |
| ! | ATAGAGTTTAAATCTCATGT+AGG | - | chr1_3:7093393-7093412 | Msa0100640:CDS | 25.0% |
| ! | AAAATGATCATCAGTAACAA+CGG | - | chr1_3:7093424-7093443 | Msa0100640:CDS | 25.0% |
| !! | TACAGACCTTAGTTTAAAAT+CGG | + | chr1_3:7093983-7094002 | None:intergenic | 25.0% |
| ! | CTATCTTAAAAGTCATACAA+AGG | - | chr1_3:7094118-7094137 | Msa0100640:intron | 25.0% |
| !!! | TCTTGATTTTTCAAAAATCG+AGG | - | chr1_3:7094389-7094408 | Msa0100640:CDS | 25.0% |
| ! | TTCCGAATAAAAAACTCAAT+TGG | - | chr1_3:7094511-7094530 | Msa0100640:CDS | 25.0% |
| ! | CCAATTATGATAACTGTTAT+TGG | + | chr1_3:7094601-7094620 | None:intergenic | 25.0% |
| ! | CCAATAACAGTTATCATAAT+TGG | - | chr1_3:7094598-7094617 | Msa0100640:intron | 25.0% |
| !! | TGTCTTCTCTTTGATTTAAA+GGG | + | chr1_3:7094910-7094929 | None:intergenic | 25.0% |
| !! | ATGTCTTCTCTTTGATTTAA+AGG | + | chr1_3:7094911-7094930 | None:intergenic | 25.0% |
| ! | TTTAAATCAAAGAGAAGACA+TGG | - | chr1_3:7094910-7094929 | Msa0100640:intron | 25.0% |
| ! | AACGTTTCTTTAAATCAAAC+AGG | - | chr1_3:7094972-7094991 | Msa0100640:CDS | 25.0% |
| ! | ATAATTAAGATACACTGATG+TGG | + | chr1_3:7095050-7095069 | None:intergenic | 25.0% |
| ! | GATAAATGTTGTTCATTTAC+GGG | + | chr1_3:7095972-7095991 | None:intergenic | 25.0% |
| ! | GGATAAATGTTGTTCATTTA+CGG | + | chr1_3:7095973-7095992 | None:intergenic | 25.0% |
| TGATTGAATTGAAGAGAAGA+TGG | - | chr1_3:7092996-7093015 | Msa0100640:three_prime_UTR | 30.0% | |
| TTGAATGATTTGAAGAGAGA+GGG | + | chr1_3:7093184-7093203 | None:intergenic | 30.0% | |
| ATTGAATGATTTGAAGAGAG+AGG | + | chr1_3:7093185-7093204 | None:intergenic | 30.0% | |
| CTCTTCAAATCATTCAATCT+TGG | - | chr1_3:7093187-7093206 | Msa0100640:CDS | 30.0% | |
| AAATGATCATCAGTAACAAC+GGG | - | chr1_3:7093425-7093444 | Msa0100640:CDS | 30.0% | |
| !! | CCAATCATGTATGTTACTTT+AGG | + | chr1_3:7093556-7093575 | None:intergenic | 30.0% |
| CCTAAAGTAACATACATGAT+TGG | - | chr1_3:7093553-7093572 | Msa0100640:CDS | 30.0% | |
| ATAGTGAGAAGAAGGTTAAT+TGG | - | chr1_3:7093704-7093723 | Msa0100640:intron | 30.0% | |
| !! | TTCCGCCACAAATATTTTTA+TGG | - | chr1_3:7093803-7093822 | Msa0100640:intron | 30.0% |
| !! | TCCGCCACAAATATTTTTAT+GGG | - | chr1_3:7093804-7093823 | Msa0100640:intron | 30.0% |
| TGACCCCATAAAAATATTTG+TGG | + | chr1_3:7093811-7093830 | None:intergenic | 30.0% | |
| TTTCCATGTTGCAAATGAAA+AGG | - | chr1_3:7093843-7093862 | Msa0100640:intron | 30.0% | |
| TTCCATGTTGCAAATGAAAA+GGG | - | chr1_3:7093844-7093863 | Msa0100640:intron | 30.0% | |
| ! | ACAGACCTTAGTTTAAAATC+GGG | + | chr1_3:7093982-7094001 | None:intergenic | 30.0% |
| ! | TGACTTTCCCTTTTCTTTTA+TGG | - | chr1_3:7094016-7094035 | Msa0100640:intron | 30.0% |
| !! | TACGAAGTGTTGTCAAATAT+CGG | + | chr1_3:7094173-7094192 | None:intergenic | 30.0% |
| TCGTACTAAATTGTGTTTAG+CGG | - | chr1_3:7094188-7094207 | Msa0100640:intron | 30.0% | |
| ATGTTACGCTATAGTGATAT+AGG | - | chr1_3:7094234-7094253 | Msa0100640:intron | 30.0% | |
| TGTTACGCTATAGTGATATA+GGG | - | chr1_3:7094235-7094254 | Msa0100640:intron | 30.0% | |
| ATCAGTTAGTGTTGTCAAAT+TGG | + | chr1_3:7094273-7094292 | None:intergenic | 30.0% | |
| AATTTGACAACACTAACTGA+TGG | - | chr1_3:7094272-7094291 | Msa0100640:intron | 30.0% | |
| ! | ACAAGCATTTTCCTAAATCA+GGG | + | chr1_3:7094449-7094468 | None:intergenic | 30.0% |
| ! | TACAAGCATTTTCCTAAATC+AGG | + | chr1_3:7094450-7094469 | None:intergenic | 30.0% |
| AAAATGCTTGTACTTTGACT+TGG | - | chr1_3:7094458-7094477 | Msa0100640:CDS | 30.0% | |
| AACAATCTTACCTTTACTTC+AGG | + | chr1_3:7094561-7094580 | None:intergenic | 30.0% | |
| !!! | TATTGGGATATTTTGATTCG+AGG | + | chr1_3:7094584-7094603 | None:intergenic | 30.0% |
| ! | TTGAATTGAAGCATGTTTTG+AGG | + | chr1_3:7094671-7094690 | None:intergenic | 30.0% |
| AACATGCTTCAATTCAAAAC+AGG | - | chr1_3:7094674-7094693 | Msa0100640:intron | 30.0% | |
| TATGTTCCTAGTTACGATAT+TGG | - | chr1_3:7094706-7094725 | Msa0100640:intron | 30.0% | |
| !!! | TTTGTTTTGCTTAGTTTGCT+TGG | - | chr1_3:7094817-7094836 | Msa0100640:intron | 30.0% |
| !!! | TTGTTTTGCTTAGTTTGCTT+GGG | - | chr1_3:7094818-7094837 | Msa0100640:intron | 30.0% |
| CTATAGATTTCGGAACAAAA+TGG | + | chr1_3:7095006-7095025 | None:intergenic | 30.0% | |
| AGCATGCAAACTATAGATTT+CGG | + | chr1_3:7095016-7095035 | None:intergenic | 30.0% | |
| ! | TCAACTGTGTCATTAAATAG+AGG | - | chr1_3:7095078-7095097 | Msa0100640:CDS | 30.0% |
| GCTTATCTGACAACAATAAA+AGG | + | chr1_3:7095228-7095247 | None:intergenic | 30.0% | |
| !!! | GTTGATTGTATTTTAATCCG+TGG | - | chr1_3:7095252-7095271 | Msa0100640:intron | 30.0% |
| ! | ATATATGATAGTGATCCCTT+GGG | - | chr1_3:7095417-7095436 | Msa0100640:intron | 30.0% |
| ! | AAAGGTGCATCATTGAAAAA+AGG | + | chr1_3:7095759-7095778 | None:intergenic | 30.0% |
| TGAATTGAAGAGAAGATGGT+TGG | - | chr1_3:7093000-7093019 | Msa0100640:three_prime_UTR | 35.0% | |
| AAACCAAAAGCAGTGATTGT+TGG | - | chr1_3:7093033-7093052 | Msa0100640:three_prime_UTR | 35.0% | |
| ! | ATCAATAGTTAGTGGATGAG+TGG | + | chr1_3:7093244-7093263 | None:intergenic | 35.0% |
| TCATCCACTAACTATTGATC+AGG | - | chr1_3:7093245-7093264 | Msa0100640:CDS | 35.0% | |
| TTGACCTGATCAATAGTTAG+TGG | + | chr1_3:7093252-7093271 | None:intergenic | 35.0% | |
| ! | ACATACATGATTGGTTGTGT+TGG | - | chr1_3:7093562-7093581 | Msa0100640:CDS | 35.0% |
| TCTTAATCTTGAACAGAACC+TGG | - | chr1_3:7093675-7093694 | Msa0100640:intron | 35.0% | |
| CCCCATAAAAATATTTGTGG+CGG | + | chr1_3:7093808-7093827 | None:intergenic | 35.0% | |
| !! | CCGCCACAAATATTTTTATG+GGG | - | chr1_3:7093805-7093824 | Msa0100640:intron | 35.0% |
| ! | ACTTTAGCCTTTACAATGAC+AGG | + | chr1_3:7093871-7093890 | None:intergenic | 35.0% |
| AAGGCTAAAGTTGTGAAAAC+TGG | - | chr1_3:7093880-7093899 | Msa0100640:intron | 35.0% | |
| TAAAGTTGTGAAAACTGGAG+AGG | - | chr1_3:7093885-7093904 | Msa0100640:intron | 35.0% | |
| TAAAATCGGGGAGATATTTG+CGG | + | chr1_3:7093969-7093988 | None:intergenic | 35.0% | |
| ! | ATCTCCCCGATTTTAAACTA+AGG | - | chr1_3:7093974-7093993 | Msa0100640:intron | 35.0% |
| ! | CAGACCTTAGTTTAAAATCG+GGG | + | chr1_3:7093981-7094000 | None:intergenic | 35.0% |
| TATATGGAGAATGCTCTCTA+AGG | - | chr1_3:7094319-7094338 | Msa0100640:intron | 35.0% | |
| ! | AGTATGTTTTGCAGGTATTC+AGG | - | chr1_3:7094345-7094364 | Msa0100640:intron | 35.0% |
| ! | GCTTTTCCAATATCGTAACT+AGG | + | chr1_3:7094715-7094734 | None:intergenic | 35.0% |
| ! | TTGGAAAAGCTTTCTAGCAA+AGG | - | chr1_3:7094725-7094744 | Msa0100640:intron | 35.0% |
| ! | TGGAAAAGCTTTCTAGCAAA+GGG | - | chr1_3:7094726-7094745 | Msa0100640:intron | 35.0% |
| !!! | TGTTTTGCTTAGTTTGCTTG+GGG | - | chr1_3:7094819-7094838 | Msa0100640:intron | 35.0% |
| ! | CTTCTCTTTGATTTAAAGGG+CGG | + | chr1_3:7094907-7094926 | None:intergenic | 35.0% |
| TACACTGATGTGGCAATAAA+AGG | + | chr1_3:7095040-7095059 | None:intergenic | 35.0% | |
| !!! | CCTGAAGAATTTTGAAACCA+CGG | + | chr1_3:7095272-7095291 | None:intergenic | 35.0% |
| CGTGGTTTCAAAATTCTTCA+GGG | - | chr1_3:7095270-7095289 | Msa0100640:intron | 35.0% | |
| ACCAAGAAGCAGAAAAAGTA+TGG | - | chr1_3:7095340-7095359 | Msa0100640:intron | 35.0% | |
| !!! | TCCATACTTTTTCTGCTTCT+TGG | + | chr1_3:7095344-7095363 | None:intergenic | 35.0% |
| AAAGGTCATGAAAGAAACGA+AGG | - | chr1_3:7095377-7095396 | Msa0100640:intron | 35.0% | |
| ! | CATATATGATAGTGATCCCT+TGG | - | chr1_3:7095416-7095435 | Msa0100640:intron | 35.0% |
| ! | TATATGATAGTGATCCCTTG+GGG | - | chr1_3:7095418-7095437 | Msa0100640:intron | 35.0% |
| TTGTCATGTTTGTGCTTCTA+AGG | + | chr1_3:7095506-7095525 | None:intergenic | 35.0% | |
| CATGACAATATTAGATGCAG+CGG | - | chr1_3:7095518-7095537 | Msa0100640:intron | 35.0% | |
| TAGGCAAATGCATAGAGAAA+TGG | - | chr1_3:7095544-7095563 | Msa0100640:intron | 35.0% | |
| AGGCAAATGCATAGAGAAAT+GGG | - | chr1_3:7095545-7095564 | Msa0100640:intron | 35.0% | |
| GATCAAAAGGATCTCTATCA+GGG | + | chr1_3:7095686-7095705 | None:intergenic | 35.0% | |
| GTAACAGAAGCAAATGACAA+AGG | + | chr1_3:7095777-7095796 | None:intergenic | 35.0% | |
| ATTGTCAAATTAAACTGCCC+AGG | + | chr1_3:7095857-7095876 | None:intergenic | 35.0% | |
| ATCCCAACCAGCTAAGATAA+GGG | + | chr1_3:7093091-7093110 | None:intergenic | 40.0% | |
| !!! | AGGTGGTTTTTTCAAGGACA+AGG | + | chr1_3:7093116-7093135 | None:intergenic | 40.0% |
| TCTTCTCACTATCAGTTACC+AGG | + | chr1_3:7093696-7093715 | None:intergenic | 40.0% | |
| ! | GGTAACTGATAGTGAGAAGA+AGG | - | chr1_3:7093696-7093715 | Msa0100640:intron | 40.0% |
| TAAACTTCAGAGCAGCACAT+TGG | - | chr1_3:7093749-7093768 | Msa0100640:intron | 40.0% | |
| AAACTTCAGAGCAGCACATT+GGG | - | chr1_3:7093750-7093769 | Msa0100640:intron | 40.0% | |
| ! | GACCCTTTTCATTTGCAACA+TGG | + | chr1_3:7093849-7093868 | None:intergenic | 40.0% |
| AAAGGGTCCTGTCATTGTAA+AGG | - | chr1_3:7093861-7093880 | Msa0100640:intron | 40.0% | |
| GGAGAGGTTATTGAGATTGT+AGG | - | chr1_3:7093901-7093920 | Msa0100640:intron | 40.0% | |
| ! | TAAGGTCGAGTATGTTTTGC+AGG | - | chr1_3:7094337-7094356 | Msa0100640:intron | 40.0% |
| AACCATCACAGGTATCAAGA+AGG | - | chr1_3:7094419-7094438 | Msa0100640:CDS | 40.0% | |
| ! | AAGAAGGCATACCCTGATTT+AGG | - | chr1_3:7094435-7094454 | Msa0100640:CDS | 40.0% |
| !! | TTAGTTTGCTTGGGGATGTA+AGG | - | chr1_3:7094827-7094846 | Msa0100640:intron | 40.0% |
| TTCGGAACAAAATGGAGAGT+AGG | + | chr1_3:7094998-7095017 | None:intergenic | 40.0% | |
| ATAGCAGCACTATAGTGTAG+CGG | - | chr1_3:7095105-7095124 | Msa0100640:CDS | 40.0% | |
| CCGTGGTTTCAAAATTCTTC+AGG | - | chr1_3:7095269-7095288 | Msa0100640:intron | 40.0% | |
| !!! | AGTTACTTTTGTCGTCACAG+AGG | + | chr1_3:7095298-7095317 | None:intergenic | 40.0% |
| ATGGATTCCTGAGTTAGCAA+AGG | - | chr1_3:7095359-7095378 | Msa0100640:intron | 40.0% | |
| TTCATGACCTTTGCTAACTC+AGG | + | chr1_3:7095369-7095388 | None:intergenic | 40.0% | |
| !! | GAAGATATTCTGGGACAATG+TGG | - | chr1_3:7095440-7095459 | Msa0100640:intron | 40.0% |
| !! | ATTCTGGGACAATGTGGTAT+TGG | - | chr1_3:7095446-7095465 | Msa0100640:intron | 40.0% |
| !! | TTTGTGCTTCTAAGGTAGTG+AGG | + | chr1_3:7095498-7095517 | None:intergenic | 40.0% |
| ATATTAGATGCAGCGGTGTT+AGG | - | chr1_3:7095525-7095544 | Msa0100640:intron | 40.0% | |
| GGAAGCTGAAAAGCTTGAAT+CGG | - | chr1_3:7095566-7095585 | Msa0100640:intron | 40.0% | |
| ! | TGAAAAGCTTGAATCGGCTT+TGG | - | chr1_3:7095572-7095591 | Msa0100640:intron | 40.0% |
| ! | AGAACTTGCTTGGAAGTAAC+TGG | + | chr1_3:7095621-7095640 | None:intergenic | 40.0% |
| GGATCAAAAGGATCTCTATC+AGG | + | chr1_3:7095687-7095706 | None:intergenic | 40.0% | |
| GAAGAGAAGATGGTTGGAGA+AGG | - | chr1_3:7093006-7093025 | Msa0100640:three_prime_UTR | 45.0% | |
| ! | CCTCCAACAATCACTGCTTT+TGG | + | chr1_3:7093039-7093058 | None:intergenic | 45.0% |
| CCAAAAGCAGTGATTGTTGG+AGG | - | chr1_3:7093036-7093055 | Msa0100640:three_prime_UTR | 45.0% | |
| GTGATTGTTGGAGGTAGCAT+TGG | - | chr1_3:7093045-7093064 | Msa0100640:three_prime_UTR | 45.0% | |
| ! | ATTGTTGGAGGTAGCATTGG+AGG | - | chr1_3:7093048-7093067 | Msa0100640:three_prime_UTR | 45.0% |
| ! | TTGTTGGAGGTAGCATTGGA+GGG | - | chr1_3:7093049-7093068 | Msa0100640:three_prime_UTR | 45.0% |
| ATGCCCTTATCTTAGCTGGT+TGG | - | chr1_3:7093085-7093104 | Msa0100640:three_prime_UTR | 45.0% | |
| TGCCCTTATCTTAGCTGGTT+GGG | - | chr1_3:7093086-7093105 | Msa0100640:three_prime_UTR | 45.0% | |
| CATCCCAACCAGCTAAGATA+AGG | + | chr1_3:7093092-7093111 | None:intergenic | 45.0% | |
| GTGTTGTGTAGGAATTGTGG+TGG | + | chr1_3:7093222-7093241 | None:intergenic | 45.0% | |
| !! | GTGGTGTTGTGTAGGAATTG+TGG | + | chr1_3:7093225-7093244 | None:intergenic | 45.0% |
| ! | TCCCTGAAGTGTTTGTTCAG+TGG | - | chr1_3:7093342-7093361 | Msa0100640:CDS | 45.0% |
| GCCACTGAACAAACACTTCA+GGG | + | chr1_3:7093346-7093365 | None:intergenic | 45.0% | |
| TGCCACTGAACAAACACTTC+AGG | + | chr1_3:7093347-7093366 | None:intergenic | 45.0% | |
| ! | TGAAGTGTTTGTTCAGTGGC+AGG | - | chr1_3:7093346-7093365 | Msa0100640:CDS | 45.0% |
| TCATCAGTAACAACGGGACA+AGG | - | chr1_3:7093431-7093450 | Msa0100640:CDS | 45.0% | |
| AACTTCAGAGCAGCACATTG+GGG | - | chr1_3:7093751-7093770 | Msa0100640:intron | 45.0% | |
| ! | GATTTGCTTGTTGCTGCAGA+TGG | - | chr1_3:7093925-7093944 | Msa0100640:intron | 45.0% |
| AGGCTGCGTTATAGTGCTAT+AGG | - | chr1_3:7094138-7094157 | Msa0100640:intron | 45.0% | |
| GGTATTCAGGCTATTGTGCT+TGG | - | chr1_3:7094358-7094377 | Msa0100640:intron | 45.0% | |
| GAGGATTCAGAAACCATCAC+AGG | - | chr1_3:7094408-7094427 | Msa0100640:CDS | 45.0% | |
| TGCCTTCTTGATACCTGTGA+TGG | + | chr1_3:7094424-7094443 | None:intergenic | 45.0% | |
| !! | TTGTACTTTGACTTGGCCTC+AGG | - | chr1_3:7094465-7094484 | Msa0100640:CDS | 45.0% |
| TAACACACTGTGTGTACCTG+AGG | + | chr1_3:7094484-7094503 | None:intergenic | 45.0% | |
| CTTACCTTTACTTCAGGCTC+TGG | + | chr1_3:7094555-7094574 | None:intergenic | 45.0% | |
| ATCCCTTGGGGAAGATATTC+TGG | - | chr1_3:7095430-7095449 | Msa0100640:intron | 45.0% | |
| TCCCTTGGGGAAGATATTCT+GGG | - | chr1_3:7095431-7095450 | Msa0100640:intron | 45.0% | |
| TCCCAGAATATCTTCCCCAA+GGG | + | chr1_3:7095435-7095454 | None:intergenic | 45.0% | |
| !! | TGGGACAATGTGGTATTGGT+AGG | - | chr1_3:7095450-7095469 | Msa0100640:intron | 45.0% |
| !! | GGGACAATGTGGTATTGGTA+GGG | - | chr1_3:7095451-7095470 | Msa0100640:intron | 45.0% |
| !! | GGACAATGTGGTATTGGTAG+GGG | - | chr1_3:7095452-7095471 | Msa0100640:intron | 45.0% |
| TAAGGTAGTGAGGCGTAGTA+GGG | + | chr1_3:7095488-7095507 | None:intergenic | 45.0% | |
| ! | CCTTGCATGAAGAACTTGCT+TGG | + | chr1_3:7095631-7095650 | None:intergenic | 45.0% |
| CCAAGCAAGTTCTTCATGCA+AGG | - | chr1_3:7095628-7095647 | Msa0100640:intron | 45.0% | |
| !! | CTTGCTGACTTGGGATCAAA+AGG | + | chr1_3:7095699-7095718 | None:intergenic | 45.0% |
| ! | CTTTTGATCCCAAGTCAGCA+AGG | - | chr1_3:7095697-7095716 | Msa0100640:CDS | 45.0% |
| !! | TCCTCTTTCCTTGCTGACTT+GGG | + | chr1_3:7095708-7095727 | None:intergenic | 45.0% |
| ACACTAATAAGGCGATTGCC+TGG | - | chr1_3:7095836-7095855 | Msa0100640:CDS | 45.0% | |
| CACTAATAAGGCGATTGCCT+GGG | - | chr1_3:7095837-7095856 | Msa0100640:CDS | 45.0% | |
| GCACATGCCCTTATCTTAGC+TGG | - | chr1_3:7093081-7093100 | Msa0100640:three_prime_UTR | 50.0% | |
| !!! | GAGGGGAGGTGGTTTTTTCA+AGG | + | chr1_3:7093122-7093141 | None:intergenic | 50.0% |
| AGTAGGACTTCCAGTTGGAG+GGG | + | chr1_3:7093139-7093158 | None:intergenic | 50.0% | |
| CAGTAGGACTTCCAGTTGGA+GGG | + | chr1_3:7093140-7093159 | None:intergenic | 50.0% | |
| !! | GTGGATGAGTGGTGTTGTGT+AGG | + | chr1_3:7093233-7093252 | None:intergenic | 50.0% |
| GCACATTGGGGTGATCTTCA+TGG | - | chr1_3:7093763-7093782 | Msa0100640:intron | 50.0% | |
| AATCGGGGAGATATTTGCGG+CGG | + | chr1_3:7093966-7093985 | None:intergenic | 50.0% | |
| TCAGGCTATTGTGCTTGGAG+AGG | - | chr1_3:7094363-7094382 | Msa0100640:intron | 50.0% | |
| CAGGCTATTGTGCTTGGAGA+GGG | - | chr1_3:7094364-7094383 | Msa0100640:intron | 50.0% | |
| AGGCTATTGTGCTTGGAGAG+GGG | - | chr1_3:7094365-7094384 | Msa0100640:intron | 50.0% | |
| TCAGCCAGAGCCTGAAGTAA+AGG | - | chr1_3:7094548-7094567 | Msa0100640:CDS | 50.0% | |
| GTCCCAGAATATCTTCCCCA+AGG | + | chr1_3:7095436-7095455 | None:intergenic | 50.0% | |
| CTAAGGTAGTGAGGCGTAGT+AGG | + | chr1_3:7095489-7095508 | None:intergenic | 50.0% | |
| ! | GTTCTTCATGCAAGGCGTCT+CGG | - | chr1_3:7095636-7095655 | Msa0100640:intron | 50.0% |
| CGTCTCGGTCGCATAAAACA+AGG | - | chr1_3:7095651-7095670 | Msa0100640:intron | 50.0% | |
| CGGTCGCATAAAACAAGGTC+TGG | - | chr1_3:7095656-7095675 | Msa0100640:intron | 50.0% | |
| TCCCAAGTCAGCAAGGAAAG+AGG | - | chr1_3:7095704-7095723 | Msa0100640:CDS | 50.0% | |
| ! | CTCCTCTTTCCTTGCTGACT+TGG | + | chr1_3:7095709-7095728 | None:intergenic | 50.0% |
| !! | AGCAAGGAAAGAGGAGTGTC+AGG | - | chr1_3:7095713-7095732 | Msa0100640:CDS | 50.0% |
| AAAACCACCTCCCCTCCAAC+TGG | - | chr1_3:7093126-7093145 | Msa0100640:exon | 55.0% | |
| CCAGTAGGACTTCCAGTTGG+AGG | + | chr1_3:7093141-7093160 | None:intergenic | 55.0% | |
| CCTCCAACTGGAAGTCCTAC+TGG | - | chr1_3:7093138-7093157 | Msa0100640:exon | 55.0% | |
| GCACCAGTAGGACTTCCAGT+TGG | + | chr1_3:7093144-7093163 | None:intergenic | 55.0% | |
| ACTGGAAGTCCTACTGGTGC+AGG | - | chr1_3:7093144-7093163 | Msa0100640:CDS | 55.0% | |
| AGTCCTACTGGTGCAGGTCT+TGG | - | chr1_3:7093150-7093169 | Msa0100640:CDS | 55.0% | |
| AGTCCAAGACCTGCACCAGT+AGG | + | chr1_3:7093156-7093175 | None:intergenic | 55.0% | |
| ATCCCCTGACTCCATCTGGT+GGG | - | chr1_3:7094865-7094884 | Msa0100640:intron | 55.0% | |
| TGTACAACGCTCCCACCAGA+TGG | + | chr1_3:7094879-7094898 | None:intergenic | 55.0% | |
| ACTTCCAGTTGGAGGGGAGG+TGG | + | chr1_3:7093133-7093152 | None:intergenic | 60.0% | |
| AGGACTTCCAGTTGGAGGGG+AGG | + | chr1_3:7093136-7093155 | None:intergenic | 60.0% | |
| CAGATGGAGTCAGGGGATGG+TGG | + | chr1_3:7094863-7094882 | None:intergenic | 60.0% | |
| CACCATCCCCTGACTCCATC+TGG | - | chr1_3:7094861-7094880 | Msa0100640:intron | 60.0% | |
| CACCAGATGGAGTCAGGGGA+TGG | + | chr1_3:7094866-7094885 | None:intergenic | 60.0% | |
| CATCCCCTGACTCCATCTGG+TGG | - | chr1_3:7094864-7094883 | Msa0100640:intron | 60.0% | |
| CTCCCACCAGATGGAGTCAG+GGG | + | chr1_3:7094870-7094889 | None:intergenic | 60.0% | |
| GCTCCCACCAGATGGAGTCA+GGG | + | chr1_3:7094871-7094890 | None:intergenic | 60.0% | |
| CGCTCCCACCAGATGGAGTC+AGG | + | chr1_3:7094872-7094891 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 7092959 | 7095993 | 7092959 | ID=Msa0100640;Name=Msa0100640 |
| chr1_3 | mRNA | 7092959 | 7095993 | 7092959 | ID=Msa0100640-mRNA-1;Parent=Msa0100640;Name=Msa0100640-mRNA-1;_AED=0.13;_eAED=0.13;_QI=56|1|1|1|1|1|4|184|428 |
| chr1_3 | exon | 7092959 | 7093661 | 7092959 | ID=Msa0100640-mRNA-1:exon:2789;Parent=Msa0100640-mRNA-1 |
| chr1_3 | exon | 7094383 | 7094593 | 7094383 | ID=Msa0100640-mRNA-1:exon:2788;Parent=Msa0100640-mRNA-1 |
| chr1_3 | exon | 7094957 | 7095261 | 7094957 | ID=Msa0100640-mRNA-1:exon:2787;Parent=Msa0100640-mRNA-1 |
| chr1_3 | exon | 7095686 | 7095993 | 7095686 | ID=Msa0100640-mRNA-1:exon:2786;Parent=Msa0100640-mRNA-1 |
| chr1_3 | five_prime_UTR | 7095938 | 7095993 | 7095938 | ID=Msa0100640-mRNA-1:five_prime_utr;Parent=Msa0100640-mRNA-1 |
| chr1_3 | CDS | 7095686 | 7095937 | 7095686 | ID=Msa0100640-mRNA-1:cds;Parent=Msa0100640-mRNA-1 |
| chr1_3 | CDS | 7094957 | 7095261 | 7094957 | ID=Msa0100640-mRNA-1:cds;Parent=Msa0100640-mRNA-1 |
| chr1_3 | CDS | 7094383 | 7094593 | 7094383 | ID=Msa0100640-mRNA-1:cds;Parent=Msa0100640-mRNA-1 |
| chr1_3 | CDS | 7093143 | 7093661 | 7093143 | ID=Msa0100640-mRNA-1:cds;Parent=Msa0100640-mRNA-1 |
| chr1_3 | three_prime_UTR | 7092959 | 7093142 | 7092959 | ID=Msa0100640-mRNA-1:three_prime_utr;Parent=Msa0100640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
