Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055410 | XP_003588703.1 | 96.262 | 428 | 16 | 0 | 1 | 428 | 1 | 428 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055410 | sp|H1ZZA4|AUAG_STIAU | 27.698 | 278 | 163 | 10 | 110 | 383 | 105 | 348 | 1.63e-18 | 90.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055410 | G7I6C9 | 96.262 | 428 | 16 | 0 | 1 | 428 | 1 | 428 | 0.0 | 853 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007050 | Msa0055410 | 0.827710 | 1.346031e-54 | -8.615850e-47 |
| Msa0027540 | Msa0055410 | 0.813463 | 2.527270e-51 | -8.615850e-47 |
| Msa0046750 | Msa0055410 | 0.827839 | 1.253659e-54 | -8.615850e-47 |
| Msa0050430 | Msa0055410 | 0.816636 | 4.992419e-52 | -8.615850e-47 |
| Msa0055410 | Msa0075310 | 0.812741 | 3.638818e-51 | -8.615850e-47 |
| Msa0055410 | Msa0095380 | 0.832033 | 1.190438e-55 | -8.615850e-47 |
| Msa0055410 | Msa0100640 | 0.822265 | 2.598259e-53 | -8.615850e-47 |
| Msa0055410 | Msa0105420 | 0.802110 | 6.552659e-49 | -8.615850e-47 |
| Msa0055410 | Msa0120330 | 0.816576 | 5.149531e-52 | -8.615850e-47 |
| Msa0055410 | Msa0143430 | 0.804500 | 2.097286e-49 | -8.615850e-47 |
| Msa0055410 | Msa0168100 | 0.815550 | 8.728841e-52 | -8.615850e-47 |
| Msa0055410 | Msa0172350 | 0.810827 | 9.497422e-51 | -8.615850e-47 |
| Msa0055410 | Msa0183610 | 0.813437 | 2.561331e-51 | -8.615850e-47 |
| Msa0055410 | Msa0183620 | 0.811354 | 7.303023e-51 | -8.615850e-47 |
| Msa0055410 | Msa0207000 | 0.813733 | 2.204708e-51 | -8.615850e-47 |
| Msa0055410 | Msa0235890 | 0.802842 | 4.631038e-49 | -8.615850e-47 |
| Msa0055410 | Msa0267760 | 0.817068 | 3.994926e-52 | -8.615850e-47 |
| Msa0055410 | Msa0280900 | 0.811215 | 7.826444e-51 | -8.615850e-47 |
| Msa0055410 | Msa0296760 | 0.801639 | 8.189940e-49 | -8.615850e-47 |
| Msa0055410 | Msa0324550 | 0.816202 | 6.243402e-52 | -8.615850e-47 |
| Msa0055410 | Msa0342200 | 0.804947 | 1.691644e-49 | -8.615850e-47 |
| Msa0055410 | Msa0376510 | 0.822759 | 1.995206e-53 | -8.615850e-47 |
| Msa0055410 | Msa0392070 | 0.804995 | 1.653112e-49 | -8.615850e-47 |
| Msa0055410 | Msa0413930 | 0.808576 | 2.893379e-50 | -8.615850e-47 |
| Msa0055410 | Msa0424920 | 0.800634 | 1.314386e-48 | -8.615850e-47 |
| Msa0055410 | Msa0425010 | 0.805739 | 1.154290e-49 | -8.615850e-47 |
| Msa0055410 | Msa0425050 | 0.821741 | 3.436246e-53 | -8.615850e-47 |
| Msa0055410 | Msa0425940 | 0.800937 | 1.140316e-48 | -8.615850e-47 |
| Msa0055410 | Msa0426020 | 0.808678 | 2.751817e-50 | -8.615850e-47 |
| Msa0055410 | Msa0430620 | 0.820879 | 5.432473e-53 | -8.615850e-47 |
| Msa0055410 | Msa0431430 | 0.819692 | 1.016102e-52 | -8.615850e-47 |
| Msa0055410 | Msa0461640 | 0.801745 | 7.788604e-49 | -8.615850e-47 |
| Msa0055410 | Msa0470610 | 0.806763 | 7.024785e-50 | -8.615850e-47 |
| Msa0055410 | Msa0480320 | 0.804898 | 1.732086e-49 | -8.615850e-47 |
| Msa0055410 | Msa0484690 | 0.825467 | 4.615128e-54 | -8.615850e-47 |
| Msa0055410 | Msa0490350 | 0.827968 | 1.166629e-54 | -8.615850e-47 |
| Msa0055410 | Msa0508200 | 0.826101 | 3.263725e-54 | -8.615850e-47 |
| Msa0055410 | Msa0516320 | 0.802812 | 4.697338e-49 | -8.615850e-47 |
| Msa0055410 | Msa0524120 | 0.800447 | 1.435402e-48 | -8.615850e-47 |
| Msa0055410 | Msa0526710 | 0.821046 | 4.970964e-53 | -8.615850e-47 |
| Msa0055410 | Msa0527590 | 0.813319 | 2.718881e-51 | -8.615850e-47 |
| Msa0055410 | Msa0535030 | 0.820107 | 8.167609e-53 | -8.615850e-47 |
| Msa0055410 | Msa0535060 | 0.821206 | 4.567903e-53 | -8.615850e-47 |
| Msa0055410 | Msa0591060 | 0.820458 | 6.785402e-53 | -8.615850e-47 |
| Msa0055410 | Msa0591770 | 0.818071 | 2.373632e-52 | -8.615850e-47 |
| Msa0055410 | Msa0620810 | 0.892431 | 1.597750e-74 | -8.615850e-47 |
| Msa0055410 | Msa0642650 | 0.811127 | 8.176641e-51 | -8.615850e-47 |
| Msa0055410 | Msa0657670 | 0.804656 | 1.945713e-49 | -8.615850e-47 |
| Msa0055410 | Msa0669850 | 0.813734 | 2.203643e-51 | -8.615850e-47 |
| Msa0055410 | Msa0706370 | 0.806650 | 7.420480e-50 | -8.615850e-47 |
| Msa0055410 | Msa0789280 | 0.802737 | 4.868450e-49 | -8.615850e-47 |
| Msa0055410 | Msa0789290 | 0.801410 | 9.122091e-49 | -8.615850e-47 |
| Msa0055410 | Msa0874500 | 0.804398 | 2.202330e-49 | -8.615850e-47 |
| Msa0055410 | Msa0890250 | 0.826119 | 3.230702e-54 | -8.615850e-47 |
| Msa0055410 | Msa0907700 | 0.809158 | 2.173003e-50 | -8.615850e-47 |
| Msa0055410 | Msa0925160 | 0.800189 | 1.619285e-48 | -8.615850e-47 |
| Msa0055410 | Msa0936270 | 0.804194 | 2.428610e-49 | -8.615850e-47 |
| Msa0055410 | Msa0946320 | 0.806759 | 7.037001e-50 | -8.615850e-47 |
| Msa0055410 | Msa0990520 | 0.807815 | 4.204121e-50 | -8.615850e-47 |
| Msa0055410 | Msa1018790 | 0.830922 | 2.234849e-55 | -8.615850e-47 |
| Msa0055410 | Msa1038050 | 0.835153 | 1.980513e-56 | -8.615850e-47 |
| Msa0055410 | Msa1040830 | 0.829778 | 4.254864e-55 | -8.615850e-47 |
| Msa0055410 | Msa1044340 | 0.806255 | 8.990471e-50 | -8.615850e-47 |
| Msa0055410 | Msa1129560 | 0.825443 | 4.673944e-54 | -8.615850e-47 |
| Msa0055410 | Msa1129720 | 0.805017 | 1.635460e-49 | -8.615850e-47 |
| Msa0055410 | Msa1139810 | 0.805173 | 1.516835e-49 | -8.615850e-47 |
| Msa0055410 | Msa1159990 | 0.806325 | 8.689916e-50 | -8.615850e-47 |
| Msa0055410 | Msa1171690 | 0.825553 | 4.401749e-54 | -8.615850e-47 |
| Msa0055410 | Msa1210770 | 0.815919 | 7.222831e-52 | -8.615850e-47 |
| Msa0055410 | Msa1242330 | 0.813212 | 2.869383e-51 | -8.615850e-47 |
| Msa0055410 | Msa1249870 | 0.821700 | 3.512244e-53 | -8.615850e-47 |
| Msa0055410 | Msa1333910 | 0.802996 | 4.303892e-49 | -8.615850e-47 |
| Msa0055410 | Msa1374440 | 0.821813 | 3.307043e-53 | -8.615850e-47 |
| Msa0055410 | Msa1379990 | 0.814330 | 1.627849e-51 | -8.615850e-47 |
| Msa0055410 | Msa1390310 | 0.801793 | 7.614402e-49 | -8.615850e-47 |
| Msa0055410 | Msa1418200 | 0.803862 | 2.846399e-49 | -8.615850e-47 |
| Msa0055410 | Msa1422270 | 0.818960 | 1.492355e-52 | -8.615850e-47 |
| Msa0055410 | Msa1464560 | 0.806891 | 6.600903e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055410 | MtrunA17_Chr1g0148881 | 96.262 | 428 | 16 | 0 | 1 | 428 | 1 | 428 | 0.0 | 853 |
| Msa0055410 | MtrunA17_Chr1g0148911 | 75.904 | 166 | 40 | 0 | 263 | 428 | 2 | 167 | 3.35e-86 | 260 |
| Msa0055410 | MtrunA17_Chr1g0148891 | 75.455 | 110 | 26 | 1 | 1 | 110 | 1 | 109 | 3.55e-49 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055410 | AT5G11330.1 | 65.700 | 414 | 132 | 3 | 6 | 419 | 4 | 407 | 0.0 | 556 |
| Msa0055410 | AT5G11330.2 | 66.932 | 251 | 82 | 1 | 6 | 256 | 4 | 253 | 8.81e-123 | 357 |
Find 114 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATAAATGTTGTTCATTTA+CGG | 0.263608 | 1_2:-10377239 | None:intergenic |
| TAATTTGACAATTAAGATTA+TGG | 0.267676 | 1_2:+10377134 | Msa0055410:three_prime_UTR |
| AAGAAGGCATACCCTGATTT+AGG | 0.281482 | 1_2:+10375702 | Msa0055410:CDS |
| ACTCATCACATTAATACTTT+TGG | 0.291697 | 1_2:-10374288 | None:intergenic |
| CTCCTCTTTCCTTGCTGACT+TGG | 0.294260 | 1_2:-10376975 | None:intergenic |
| TTGTCATGTTTGTGCTTCTA+AGG | 0.298117 | 1_2:-10376772 | None:intergenic |
| AACAATCTTACCTTTACTTC+AGG | 0.303617 | 1_2:-10375825 | None:intergenic |
| CTCAACAAATCATTCAATCT+TGG | 0.317036 | 1_2:+10374505 | Msa0055410:CDS |
| GATAAATGTTGTTCATTTAC+GGG | 0.324343 | 1_2:-10377238 | None:intergenic |
| ATCCCTTGGAGAAGATATTC+TGG | 0.324905 | 1_2:+10376699 | Msa0055410:CDS |
| GGATCAAAAGGATCTCTATC+AGG | 0.331457 | 1_2:-10376953 | None:intergenic |
| CTAAGGTAGTGAGGCGTAGT+AGG | 0.337106 | 1_2:-10376755 | None:intergenic |
| AGTCCTACTGGTGCAGGTCT+TGG | 0.342814 | 1_2:+10374468 | Msa0055410:CDS |
| GGAGAGGTTATTGAGATTGT+AGG | 0.348917 | 1_2:+10375064 | Msa0055410:CDS |
| CCTCCAACAATCACTGCTTT+TGG | 0.355115 | 1_2:-10374354 | None:intergenic |
| ATAGTGAGAAGAAGGTTAAT+TGG | 0.367261 | 1_2:+10374867 | Msa0055410:CDS |
| ACAGACCTTAGTTTAAAATC+AGG | 0.374969 | 1_2:-10375142 | None:intergenic |
| TTTCCATGTTGCAAATGAAA+AGG | 0.377089 | 1_2:+10375006 | Msa0055410:CDS |
| TAGGCAAATGCATAGAGAAA+TGG | 0.381893 | 1_2:+10376813 | Msa0055410:CDS |
| CTTGCTGACTTGGGATCAAA+AGG | 0.384587 | 1_2:-10376965 | None:intergenic |
| TGCCCTTATCTTAGCTGGTT+GGG | 0.389461 | 1_2:+10374404 | Msa0055410:CDS |
| AAGGCGAAAGTTGTGAAAAC+TGG | 0.390939 | 1_2:+10375043 | Msa0055410:CDS |
| AAACTTCAGAGCAGCACATT+GGG | 0.392505 | 1_2:+10374913 | Msa0055410:CDS |
| CTTACCTTTACTTCAGGCTC+TGG | 0.395657 | 1_2:-10375819 | None:intergenic |
| TCCTCTTTCCTTGCTGACTT+GGG | 0.399593 | 1_2:-10376974 | None:intergenic |
| ATATTAGATGCAGCGGTGTT+AGG | 0.401522 | 1_2:+10376794 | Msa0055410:CDS |
| CAGGCTATTGTGCTTGGAGA+GGG | 0.406475 | 1_2:+10375631 | Msa0055410:CDS |
| TGAAAAGCTTGAATCGGCTT+TGG | 0.407533 | 1_2:+10376841 | Msa0055410:CDS |
| AAAACCACCTCCCCTCCAAC+TGG | 0.411663 | 1_2:+10374444 | Msa0055410:CDS |
| ACTTCCAGTTGGAGGGGAGG+TGG | 0.419250 | 1_2:-10374448 | None:intergenic |
| AGCAAGGAAAGAGGAGTGTC+AGG | 0.422711 | 1_2:+10376982 | Msa0055410:CDS |
| AGAACTTGCTTGGAAGTAAC+TGG | 0.427168 | 1_2:-10376887 | None:intergenic |
| AGGCAAATGCATAGAGAAAT+GGG | 0.438389 | 1_2:+10376814 | Msa0055410:CDS |
| TTGTACTTTGACTTGGCCTC+AGG | 0.443786 | 1_2:+10375732 | Msa0055410:CDS |
| GCACATGCCCTTATCTTAGC+TGG | 0.449723 | 1_2:+10374399 | Msa0055410:CDS |
| TCTTCTCACTATCAGTTGCC+AGG | 0.455826 | 1_2:-10374856 | None:intergenic |
| ATTGAATGATTTGTTGAGAG+AGG | 0.458085 | 1_2:-10374500 | None:intergenic |
| CCTCCAACTGGAAGTCCTAC+TGG | 0.459416 | 1_2:+10374456 | Msa0055410:CDS |
| TTCATGACCTTTGCTAACTC+AGG | 0.460263 | 1_2:-10376635 | None:intergenic |
| CGGTCGCATAAAACAAGGTC+TGG | 0.461955 | 1_2:+10376925 | Msa0055410:CDS |
| ATGCCCTTATCTTAGCTGGT+TGG | 0.465754 | 1_2:+10374403 | Msa0055410:CDS |
| CATCCCAACCAGCTAAGATA+AGG | 0.467240 | 1_2:-10374407 | None:intergenic |
| ACACTAATAAGGCGATTGCC+TGG | 0.470272 | 1_2:+10377105 | Msa0055410:three_prime_UTR |
| TGCCTTCTTGATACCTGTGA+TGG | 0.479221 | 1_2:-10375688 | None:intergenic |
| AAACCAAAAGCAGTGATTGT+TGG | 0.479656 | 1_2:+10374351 | Msa0055410:CDS |
| TTGAATGATTTGTTGAGAGA+GGG | 0.480315 | 1_2:-10374499 | None:intergenic |
| ATTGTTGGAGGTAGCATTGG+AGG | 0.480364 | 1_2:+10374366 | Msa0055410:CDS |
| CCTTGCATGAAGAACTTGCT+TGG | 0.482633 | 1_2:-10376897 | None:intergenic |
| GCACATTGGGGAGATCTTCA+TGG | 0.482757 | 1_2:+10374926 | Msa0055410:CDS |
| GGTATTCAGGCTATTGTGCT+TGG | 0.482760 | 1_2:+10375625 | Msa0055410:intron |
| TTCCATGTTGCAAATGAAAA+GGG | 0.483954 | 1_2:+10375007 | Msa0055410:CDS |
| ATTCTGGGACAATGTGGTAT+TGG | 0.484504 | 1_2:+10376715 | Msa0055410:CDS |
| CATATATGATAGTGATCCCT+TGG | 0.487961 | 1_2:+10376685 | Msa0055410:CDS |
| GATTTGCTTGTTGCTGCAGA+TGG | 0.492918 | 1_2:+10375088 | Msa0055410:CDS |
| GGAAGCTGAAAAGCTTGAAT+CGG | 0.497109 | 1_2:+10376835 | Msa0055410:CDS |
| GTGATTGTTGGAGGTAGCAT+TGG | 0.503861 | 1_2:+10374363 | Msa0055410:CDS |
| ATCCCAACCAGCTAAGATAA+GGG | 0.514118 | 1_2:-10374406 | None:intergenic |
| TCATCCACTAACTATTGATC+AGG | 0.514137 | 1_2:+10374563 | Msa0055410:CDS |
| TTACTTGAAATTGTAAAAGT+CGG | 0.514231 | 1_2:+10377205 | Msa0055410:three_prime_UTR |
| ACTTTCGCCTTTACAATGAC+AGG | 0.515444 | 1_2:-10375031 | None:intergenic |
| GTGGATGAGTGGTGTTGTGT+AGG | 0.518746 | 1_2:-10374548 | None:intergenic |
| ATTGTCAAATTAAACTGCCC+AGG | 0.519572 | 1_2:-10377123 | None:intergenic |
| TCAGCCAGAGCCTGAAGTAA+AGG | 0.521249 | 1_2:+10375815 | Msa0055410:CDS |
| ACTGGAAGTCCTACTGGTGC+AGG | 0.521845 | 1_2:+10374462 | Msa0055410:CDS |
| TTGACCTGATCAATAGTTAG+TGG | 0.522357 | 1_2:-10374567 | None:intergenic |
| TGGGACAATGTGGTATTGGT+AGG | 0.524425 | 1_2:+10376719 | Msa0055410:CDS |
| TCATATATGAAATTTAAGAA+AGG | 0.530399 | 1_2:-10376671 | None:intergenic |
| AAAGTATTAATGTGATGAGT+AGG | 0.531741 | 1_2:+10374291 | Msa0055410:five_prime_UTR |
| TCCCTTGGAGAAGATATTCT+GGG | 0.532438 | 1_2:+10376700 | Msa0055410:CDS |
| GAAGAGAAGATGGTTGGAGA+AGG | 0.532970 | 1_2:+10374324 | Msa0055410:exon |
| CACTAATAAGGCGATTGCCT+GGG | 0.534060 | 1_2:+10377106 | Msa0055410:three_prime_UTR |
| TAAACTTCAGAGCAGCACAT+TGG | 0.534145 | 1_2:+10374912 | Msa0055410:CDS |
| GGCAACTGATAGTGAGAAGA+AGG | 0.535301 | 1_2:+10374859 | Msa0055410:CDS |
| GTTCTTCATGCAAGGCGTCT+CGG | 0.536153 | 1_2:+10376905 | Msa0055410:CDS |
| TCAGGCTATTGTGCTTGGAG+AGG | 0.538211 | 1_2:+10375630 | Msa0055410:CDS |
| CCAAAAGCAGTGATTGTTGG+AGG | 0.538377 | 1_2:+10374354 | Msa0055410:CDS |
| CCAAGCAAGTTCTTCATGCA+AGG | 0.542002 | 1_2:+10376897 | Msa0055410:CDS |
| TGAATTGAAGAGAAGATGGT+TGG | 0.542032 | 1_2:+10374318 | Msa0055410:exon |
| AAAATGCTTGTACTTTGACT+TGG | 0.543757 | 1_2:+10375725 | Msa0055410:CDS |
| CAGACCTTAGTTTAAAATCA+GGG | 0.548814 | 1_2:-10375141 | None:intergenic |
| TAAGGTAGTGAGGCGTAGTA+GGG | 0.552562 | 1_2:-10376754 | None:intergenic |
| CCAGTAGGACTTCCAGTTGG+AGG | 0.556794 | 1_2:-10374456 | None:intergenic |
| GGGACAATGTGGTATTGGTA+GGG | 0.556947 | 1_2:+10376720 | Msa0055410:CDS |
| TGATTGAATTGAAGAGAAGA+TGG | 0.560883 | 1_2:+10374314 | Msa0055410:exon |
| AGGACTTCCAGTTGGAGGGG+AGG | 0.561460 | 1_2:-10374451 | None:intergenic |
| GTCCCAGAATATCTTCTCCA+AGG | 0.564956 | 1_2:-10376702 | None:intergenic |
| AAAGGGTCCTGTCATTGTAA+AGG | 0.570539 | 1_2:+10375024 | Msa0055410:CDS |
| CAGTAGGACTTCCAGTTGGA+GGG | 0.570665 | 1_2:-10374455 | None:intergenic |
| AGGCTATTGTGCTTGGAGAG+GGG | 0.575792 | 1_2:+10375632 | Msa0055410:CDS |
| TCCCAAGTCAGCAAGGAAAG+AGG | 0.577272 | 1_2:+10376973 | Msa0055410:CDS |
| TCCCAGAATATCTTCTCCAA+GGG | 0.587316 | 1_2:-10376701 | None:intergenic |
| GTTGTCTCTCTTCAATCCGT+CGG | 0.595021 | 1_2:+10375110 | Msa0055410:CDS |
| TTGTTGGAGGTAGCATTGGA+GGG | 0.595560 | 1_2:+10374367 | Msa0055410:CDS |
| GGACAATGTGGTATTGGTAG+GGG | 0.607883 | 1_2:+10376721 | Msa0055410:CDS |
| AGTAGGACTTCCAGTTGGAG+GGG | 0.611392 | 1_2:-10374454 | None:intergenic |
| CATGACAATATTAGATGCAG+CGG | 0.616705 | 1_2:+10376787 | Msa0055410:CDS |
| CGTCTCGGTCGCATAAAACA+AGG | 0.618626 | 1_2:+10376920 | Msa0055410:CDS |
| GATCAAAAGGATCTCTATCA+GGG | 0.619750 | 1_2:-10376952 | None:intergenic |
| AACCATCACAGGTATCAAGA+AGG | 0.619798 | 1_2:+10375686 | Msa0055410:CDS |
| GTGTTGTGTAGGAATTGTGG+AGG | 0.620269 | 1_2:-10374537 | None:intergenic |
| GTGGTGTTGTGTAGGAATTG+TGG | 0.622579 | 1_2:-10374540 | None:intergenic |
| AATCAGGGAGATATTTCCGA+CGG | 0.632586 | 1_2:-10375126 | None:intergenic |
| GAGGATTCAGAAACCATCAC+AGG | 0.640014 | 1_2:+10375675 | Msa0055410:CDS |
| ATGGATTCCTGAGTTAGCAA+AGG | 0.642615 | 1_2:+10376628 | Msa0055410:CDS |
| TTTGTGCTTCTAAGGTAGTG+AGG | 0.645723 | 1_2:-10376764 | None:intergenic |
| AACTTCAGAGCAGCACATTG+GGG | 0.648519 | 1_2:+10374914 | Msa0055410:CDS |
| GTAACAGAAGCAAATGACAA+AGG | 0.656279 | 1_2:-10377043 | None:intergenic |
| AGTCCAAGACCTGCACCAGT+AGG | 0.656699 | 1_2:-10374471 | None:intergenic |
| ATCAATAGTTAGTGGATGAG+TGG | 0.658849 | 1_2:-10374559 | None:intergenic |
| GCACCAGTAGGACTTCCAGT+TGG | 0.664365 | 1_2:-10374459 | None:intergenic |
| GAAGATATTCTGGGACAATG+TGG | 0.671683 | 1_2:+10376709 | Msa0055410:CDS |
| TAACACACTGTGTGTACCTG+AGG | 0.676605 | 1_2:-10375748 | None:intergenic |
| AAAGGTCATGAAAGAAACGA+AGG | 0.680367 | 1_2:+10376646 | Msa0055410:CDS |
| GAAAGTTGTGAAAACTGGAG+AGG | 0.699554 | 1_2:+10375048 | Msa0055410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAAGATAAAGAGA+TGG | - | chr1_2:10374599-10374618 | None:intergenic | 15.0% |
| !! | AAATTATTCTAATGATTTGA+CGG | - | chr1_2:10374748-10374767 | None:intergenic | 15.0% |
| !! | ATTAAATCCATAAAAGAAAA+GGG | - | chr1_2:10375189-10375208 | None:intergenic | 15.0% |
| !! | AATTAAATCCATAAAAGAAA+AGG | - | chr1_2:10375190-10375209 | None:intergenic | 15.0% |
| !!! | CAAATATTTTTATGATCAAA+CGG | - | chr1_2:10375248-10375267 | None:intergenic | 15.0% |
| !!! | AATTAATCTCTTCTTTTATA+TGG | + | chr1_2:10375570-10375589 | Msa0055410:intron | 15.0% |
| !! | TTATCAATAAAGAAAAATAG+TGG | - | chr1_2:10376457-10376476 | None:intergenic | 15.0% |
| !! | TCATATATGAAATTTAAGAA+AGG | - | chr1_2:10376674-10376693 | None:intergenic | 15.0% |
| !! | TAATTTGACAATTAAGATTA+TGG | + | chr1_2:10377134-10377153 | Msa0055410:three_prime_UTR | 15.0% |
| !! | ACTAAAATAACATACATGAT+TGG | + | chr1_2:10374787-10374806 | Msa0055410:intron | 20.0% |
| !!! | ATCCAATTGAGTTTTTTATT+CGG | - | chr1_2:10375783-10375802 | None:intergenic | 20.0% |
| !! | ATAAAAAACTCAATTGGATT+TGG | + | chr1_2:10375784-10375803 | Msa0055410:CDS | 20.0% |
| !! | CAATTATGATAACTGTTATT+GGG | - | chr1_2:10375867-10375886 | None:intergenic | 20.0% |
| !! | AAAAATCATTTAAGCAAATG+AGG | - | chr1_2:10375901-10375920 | None:intergenic | 20.0% |
| !!! | TAGTTTTTGTTACACTAATA+AGG | + | chr1_2:10377094-10377113 | Msa0055410:three_prime_UTR | 20.0% |
| !! | TTACTTGAAATTGTAAAAGT+CGG | + | chr1_2:10377205-10377224 | Msa0055410:three_prime_UTR | 20.0% |
| !! | ACTCATCACATTAATACTTT+TGG | - | chr1_2:10374291-10374310 | None:intergenic | 25.0% |
| !! | AAAGTATTAATGTGATGAGT+AGG | + | chr1_2:10374291-10374310 | Msa0055410:five_prime_UTR | 25.0% |
| ! | AATAAAAGATAAAGAGATGG+TGG | - | chr1_2:10374596-10374615 | None:intergenic | 25.0% |
| !!! | TTCCACCACAAATATTTTTA+TGG | + | chr1_2:10374966-10374985 | Msa0055410:CDS | 25.0% |
| !!! | TCCACCACAAATATTTTTAT+GGG | + | chr1_2:10374967-10374986 | Msa0055410:CDS | 25.0% |
| !! | TAACTTTCCCTTTTCTTTTA+TGG | + | chr1_2:10375179-10375198 | Msa0055410:intron | 25.0% |
| ! | CTATCTTAAAAGTCATACAA+AGG | + | chr1_2:10375281-10375300 | Msa0055410:intron | 25.0% |
| !!! | TACAAAGTGTTGTCAAATAT+CGG | - | chr1_2:10375440-10375459 | None:intergenic | 25.0% |
| !!! | TCTTGATTTTTCAAAAATCG+AGG | + | chr1_2:10375656-10375675 | Msa0055410:CDS | 25.0% |
| ! | TTCCGAATAAAAAACTCAAT+TGG | + | chr1_2:10375778-10375797 | Msa0055410:CDS | 25.0% |
| ! | CCAATTATGATAACTGTTAT+TGG | - | chr1_2:10375868-10375887 | None:intergenic | 25.0% |
| ! | CCAATAACAGTTATCATAAT+TGG | + | chr1_2:10375865-10375884 | Msa0055410:intron | 25.0% |
| !! | TGTCTTCTCTTTGATTTAAA+GGG | - | chr1_2:10376178-10376197 | None:intergenic | 25.0% |
| !! | ATGTCTTCTCTTTGATTTAA+AGG | - | chr1_2:10376179-10376198 | None:intergenic | 25.0% |
| ! | TTTAAATCAAAGAGAAGACA+TGG | + | chr1_2:10376178-10376197 | Msa0055410:intron | 25.0% |
| ! | AACGTTTCTTTAAATCAAAC+AGG | + | chr1_2:10376239-10376258 | Msa0055410:intron | 25.0% |
| ! | ATAATTAAGATACACTGATG+TGG | - | chr1_2:10376319-10376338 | None:intergenic | 25.0% |
| ! | GATAAATGTTGTTCATTTAC+GGG | - | chr1_2:10377241-10377260 | None:intergenic | 25.0% |
| ! | GGATAAATGTTGTTCATTTA+CGG | - | chr1_2:10377242-10377261 | None:intergenic | 25.0% |
| TGATTGAATTGAAGAGAAGA+TGG | + | chr1_2:10374314-10374333 | Msa0055410:exon | 30.0% | |
| !! | TTGAATGATTTGTTGAGAGA+GGG | - | chr1_2:10374502-10374521 | None:intergenic | 30.0% |
| !! | ATTGAATGATTTGTTGAGAG+AGG | - | chr1_2:10374503-10374522 | None:intergenic | 30.0% |
| CTCAACAAATCATTCAATCT+TGG | + | chr1_2:10374505-10374524 | Msa0055410:CDS | 30.0% | |
| TCCTTGAAATGTTTGTTTAG+TGG | + | chr1_2:10374663-10374682 | Msa0055410:intron | 30.0% | |
| ACCACTAAACAAACATTTCA+AGG | - | chr1_2:10374667-10374686 | None:intergenic | 30.0% | |
| ATAGTGAGAAGAAGGTTAAT+TGG | + | chr1_2:10374867-10374886 | Msa0055410:CDS | 30.0% | |
| !! | CCACCACAAATATTTTTATG+GGG | + | chr1_2:10374968-10374987 | Msa0055410:CDS | 30.0% |
| TGACCCCATAAAAATATTTG+TGG | - | chr1_2:10374974-10374993 | None:intergenic | 30.0% | |
| TTTCCATGTTGCAAATGAAA+AGG | + | chr1_2:10375006-10375025 | Msa0055410:CDS | 30.0% | |
| TTCCATGTTGCAAATGAAAA+GGG | + | chr1_2:10375007-10375026 | Msa0055410:CDS | 30.0% | |
| ! | ATCTCCCTGATTTTAAACTA+AGG | + | chr1_2:10375137-10375156 | Msa0055410:CDS | 30.0% |
| ! | CAGACCTTAGTTTAAAATCA+GGG | - | chr1_2:10375144-10375163 | None:intergenic | 30.0% |
| ! | ACAGACCTTAGTTTAAAATC+AGG | - | chr1_2:10375145-10375164 | None:intergenic | 30.0% |
| ! | TACAAAGGATGATTTGTGAT+TGG | + | chr1_2:10375296-10375315 | Msa0055410:intron | 30.0% |
| ATGTTACGCTATAGTGATAT+AGG | + | chr1_2:10375501-10375520 | Msa0055410:intron | 30.0% | |
| TGTTACGCTATAGTGATATA+GGG | + | chr1_2:10375502-10375521 | Msa0055410:intron | 30.0% | |
| ATCAGTTAGTGTTGTCAAAT+TGG | - | chr1_2:10375540-10375559 | None:intergenic | 30.0% | |
| ! | ACAAGCATTTTCCTAAATCA+GGG | - | chr1_2:10375716-10375735 | None:intergenic | 30.0% |
| ! | TACAAGCATTTTCCTAAATC+AGG | - | chr1_2:10375717-10375736 | None:intergenic | 30.0% |
| AAAATGCTTGTACTTTGACT+TGG | + | chr1_2:10375725-10375744 | Msa0055410:CDS | 30.0% | |
| AACAATCTTACCTTTACTTC+AGG | - | chr1_2:10375828-10375847 | None:intergenic | 30.0% | |
| !!! | TATTGGGATATTTTGATTCG+AGG | - | chr1_2:10375851-10375870 | None:intergenic | 30.0% |
| ! | TTGAATTGAAGCATGTTTTG+AGG | - | chr1_2:10375939-10375958 | None:intergenic | 30.0% |
| AACATGCTTCAATTCAAAAC+AGG | + | chr1_2:10375942-10375961 | Msa0055410:intron | 30.0% | |
| TATGTTCCTAGTTACGATAT+TGG | + | chr1_2:10375974-10375993 | Msa0055410:intron | 30.0% | |
| !!! | TTTGTTTTGCTTAGTTTGCT+TGG | + | chr1_2:10376085-10376104 | Msa0055410:intron | 30.0% |
| !!! | TTGTTTTGCTTAGTTTGCTT+GGG | + | chr1_2:10376086-10376105 | Msa0055410:intron | 30.0% |
| CTATAGATTTCGGAACAAAA+TGG | - | chr1_2:10376273-10376292 | None:intergenic | 30.0% | |
| AGCATGCAAACTATAGATTT+CGG | - | chr1_2:10376283-10376302 | None:intergenic | 30.0% | |
| ! | TCAACTGTGTCATTAAATAG+AGG | + | chr1_2:10376347-10376366 | Msa0055410:intron | 30.0% |
| GCTTATCTGACAACAATAAA+AGG | - | chr1_2:10376497-10376516 | None:intergenic | 30.0% | |
| !!! | GTTGATTGTATTTTAATCCG+TGG | + | chr1_2:10376521-10376540 | Msa0055410:intron | 30.0% |
| ! | AAAGGTGCATCATTGAAAAA+AGG | - | chr1_2:10377028-10377047 | None:intergenic | 30.0% |
| TGAATTGAAGAGAAGATGGT+TGG | + | chr1_2:10374318-10374337 | Msa0055410:exon | 35.0% | |
| AAACCAAAAGCAGTGATTGT+TGG | + | chr1_2:10374351-10374370 | Msa0055410:CDS | 35.0% | |
| ! | ATCAATAGTTAGTGGATGAG+TGG | - | chr1_2:10374562-10374581 | None:intergenic | 35.0% |
| TCATCCACTAACTATTGATC+AGG | + | chr1_2:10374563-10374582 | Msa0055410:CDS | 35.0% | |
| TTGACCTGATCAATAGTTAG+TGG | - | chr1_2:10374570-10374589 | None:intergenic | 35.0% | |
| ! | ACATACATGATTGGTTGTGT+TGG | + | chr1_2:10374796-10374815 | Msa0055410:intron | 35.0% |
| ! | CATACATGATTGGTTGTGTT+GGG | + | chr1_2:10374797-10374816 | Msa0055410:intron | 35.0% |
| CCCCATAAAAATATTTGTGG+TGG | - | chr1_2:10374971-10374990 | None:intergenic | 35.0% | |
| GATTAACAACGCTGCTATTA+GGG | - | chr1_2:10375343-10375362 | None:intergenic | 35.0% | |
| TTACAGTGCATTAGTGCTAT+AGG | + | chr1_2:10375404-10375423 | Msa0055410:intron | 35.0% | |
| TACAGTGCATTAGTGCTATA+GGG | + | chr1_2:10375405-10375424 | Msa0055410:intron | 35.0% | |
| AGTTAGTGTTGTCAAATTGG+CGG | - | chr1_2:10375537-10375556 | None:intergenic | 35.0% | |
| TATATGGAGAATGCTCTCTA+AGG | + | chr1_2:10375586-10375605 | Msa0055410:intron | 35.0% | |
| ! | TAAGGTCAAGTATGTTTTGC+AGG | + | chr1_2:10375604-10375623 | Msa0055410:intron | 35.0% |
| ! | AGTATGTTTTGCAGGTATTC+AGG | + | chr1_2:10375612-10375631 | Msa0055410:intron | 35.0% |
| ! | GCTTTTCCAATATCGTAACT+AGG | - | chr1_2:10375983-10376002 | None:intergenic | 35.0% |
| ! | TTGGAAAAGCTTTCTAGCAA+AGG | + | chr1_2:10375993-10376012 | Msa0055410:intron | 35.0% |
| ! | TGGAAAAGCTTTCTAGCAAA+GGG | + | chr1_2:10375994-10376013 | Msa0055410:intron | 35.0% |
| !!! | TGTTTTGCTTAGTTTGCTTG+GGG | + | chr1_2:10376087-10376106 | Msa0055410:intron | 35.0% |
| ! | CTTCTCTTTGATTTAAAGGG+CGG | - | chr1_2:10376175-10376194 | None:intergenic | 35.0% |
| TACACTGATGTGGCAATAAA+AGG | - | chr1_2:10376309-10376328 | None:intergenic | 35.0% | |
| !!! | CCTGAAGAATTTTGAAACCA+CGG | - | chr1_2:10376541-10376560 | None:intergenic | 35.0% |
| CGTGGTTTCAAAATTCTTCA+GGG | + | chr1_2:10376539-10376558 | Msa0055410:intron | 35.0% | |
| ACCAAGAAGCAGAAAAAGTA+TGG | + | chr1_2:10376609-10376628 | Msa0055410:CDS | 35.0% | |
| !!! | TCCATACTTTTTCTGCTTCT+TGG | - | chr1_2:10376613-10376632 | None:intergenic | 35.0% |
| AAAGGTCATGAAAGAAACGA+AGG | + | chr1_2:10376646-10376665 | Msa0055410:CDS | 35.0% | |
| ! | CATATATGATAGTGATCCCT+TGG | + | chr1_2:10376685-10376704 | Msa0055410:CDS | 35.0% |
| TTGTCATGTTTGTGCTTCTA+AGG | - | chr1_2:10376775-10376794 | None:intergenic | 35.0% | |
| CATGACAATATTAGATGCAG+CGG | + | chr1_2:10376787-10376806 | Msa0055410:CDS | 35.0% | |
| TAGGCAAATGCATAGAGAAA+TGG | + | chr1_2:10376813-10376832 | Msa0055410:CDS | 35.0% | |
| AGGCAAATGCATAGAGAAAT+GGG | + | chr1_2:10376814-10376833 | Msa0055410:CDS | 35.0% | |
| GATCAAAAGGATCTCTATCA+GGG | - | chr1_2:10376955-10376974 | None:intergenic | 35.0% | |
| GTAACAGAAGCAAATGACAA+AGG | - | chr1_2:10377046-10377065 | None:intergenic | 35.0% | |
| ATTGTCAAATTAAACTGCCC+AGG | - | chr1_2:10377126-10377145 | None:intergenic | 35.0% | |
| ATCCCAACCAGCTAAGATAA+GGG | - | chr1_2:10374409-10374428 | None:intergenic | 40.0% | |
| !!! | AGGTGGTTTTTTCAAGGACA+AGG | - | chr1_2:10374434-10374453 | None:intergenic | 40.0% |
| GTTGACGGTGTAAAACTCTT+GGG | + | chr1_2:10374819-10374838 | Msa0055410:intron | 40.0% | |
| !! | GTGTAAAACTCTTGGGTTGA+CGG | + | chr1_2:10374826-10374845 | Msa0055410:intron | 40.0% |
| TAAACTTCAGAGCAGCACAT+TGG | + | chr1_2:10374912-10374931 | Msa0055410:CDS | 40.0% | |
| AAACTTCAGAGCAGCACATT+GGG | + | chr1_2:10374913-10374932 | Msa0055410:CDS | 40.0% | |
| ! | GACCCTTTTCATTTGCAACA+TGG | - | chr1_2:10375012-10375031 | None:intergenic | 40.0% |
| AAAGGGTCCTGTCATTGTAA+AGG | + | chr1_2:10375024-10375043 | Msa0055410:CDS | 40.0% | |
| ACTTTCGCCTTTACAATGAC+AGG | - | chr1_2:10375034-10375053 | None:intergenic | 40.0% | |
| AAGGCGAAAGTTGTGAAAAC+TGG | + | chr1_2:10375043-10375062 | Msa0055410:CDS | 40.0% | |
| GAAAGTTGTGAAAACTGGAG+AGG | + | chr1_2:10375048-10375067 | Msa0055410:CDS | 40.0% | |
| GGAGAGGTTATTGAGATTGT+AGG | + | chr1_2:10375064-10375083 | Msa0055410:CDS | 40.0% | |
| AATCAGGGAGATATTTCCGA+CGG | - | chr1_2:10375129-10375148 | None:intergenic | 40.0% | |
| GGATTAACAACGCTGCTATT+AGG | - | chr1_2:10375344-10375363 | None:intergenic | 40.0% | |
| AACCATCACAGGTATCAAGA+AGG | + | chr1_2:10375686-10375705 | Msa0055410:CDS | 40.0% | |
| ! | AAGAAGGCATACCCTGATTT+AGG | + | chr1_2:10375702-10375721 | Msa0055410:CDS | 40.0% |
| !! | TTAGTTTGCTTGGGGATGTA+AGG | + | chr1_2:10376095-10376114 | Msa0055410:intron | 40.0% |
| TTCGGAACAAAATGGAGAGT+AGG | - | chr1_2:10376265-10376284 | None:intergenic | 40.0% | |
| ATAGCAGCACTATAGTGTAG+CGG | + | chr1_2:10376374-10376393 | Msa0055410:intron | 40.0% | |
| CCGTGGTTTCAAAATTCTTC+AGG | + | chr1_2:10376538-10376557 | Msa0055410:intron | 40.0% | |
| !!! | AGTTACTTTTGTCGTCACAG+AGG | - | chr1_2:10376567-10376586 | None:intergenic | 40.0% |
| ATGGATTCCTGAGTTAGCAA+AGG | + | chr1_2:10376628-10376647 | Msa0055410:CDS | 40.0% | |
| TTCATGACCTTTGCTAACTC+AGG | - | chr1_2:10376638-10376657 | None:intergenic | 40.0% | |
| ATCCCTTGGAGAAGATATTC+TGG | + | chr1_2:10376699-10376718 | Msa0055410:CDS | 40.0% | |
| TCCCTTGGAGAAGATATTCT+GGG | + | chr1_2:10376700-10376719 | Msa0055410:CDS | 40.0% | |
| TCCCAGAATATCTTCTCCAA+GGG | - | chr1_2:10376704-10376723 | None:intergenic | 40.0% | |
| !! | GAAGATATTCTGGGACAATG+TGG | + | chr1_2:10376709-10376728 | Msa0055410:CDS | 40.0% |
| !! | ATTCTGGGACAATGTGGTAT+TGG | + | chr1_2:10376715-10376734 | Msa0055410:CDS | 40.0% |
| !! | TTTGTGCTTCTAAGGTAGTG+AGG | - | chr1_2:10376767-10376786 | None:intergenic | 40.0% |
| ATATTAGATGCAGCGGTGTT+AGG | + | chr1_2:10376794-10376813 | Msa0055410:CDS | 40.0% | |
| GGAAGCTGAAAAGCTTGAAT+CGG | + | chr1_2:10376835-10376854 | Msa0055410:CDS | 40.0% | |
| ! | TGAAAAGCTTGAATCGGCTT+TGG | + | chr1_2:10376841-10376860 | Msa0055410:CDS | 40.0% |
| ! | AGAACTTGCTTGGAAGTAAC+TGG | - | chr1_2:10376890-10376909 | None:intergenic | 40.0% |
| GGATCAAAAGGATCTCTATC+AGG | - | chr1_2:10376956-10376975 | None:intergenic | 40.0% | |
| GAAGAGAAGATGGTTGGAGA+AGG | + | chr1_2:10374324-10374343 | Msa0055410:exon | 45.0% | |
| ! | CCTCCAACAATCACTGCTTT+TGG | - | chr1_2:10374357-10374376 | None:intergenic | 45.0% |
| CCAAAAGCAGTGATTGTTGG+AGG | + | chr1_2:10374354-10374373 | Msa0055410:CDS | 45.0% | |
| GTGATTGTTGGAGGTAGCAT+TGG | + | chr1_2:10374363-10374382 | Msa0055410:CDS | 45.0% | |
| ! | ATTGTTGGAGGTAGCATTGG+AGG | + | chr1_2:10374366-10374385 | Msa0055410:CDS | 45.0% |
| ! | TTGTTGGAGGTAGCATTGGA+GGG | + | chr1_2:10374367-10374386 | Msa0055410:CDS | 45.0% |
| ATGCCCTTATCTTAGCTGGT+TGG | + | chr1_2:10374403-10374422 | Msa0055410:CDS | 45.0% | |
| TGCCCTTATCTTAGCTGGTT+GGG | + | chr1_2:10374404-10374423 | Msa0055410:CDS | 45.0% | |
| CATCCCAACCAGCTAAGATA+AGG | - | chr1_2:10374410-10374429 | None:intergenic | 45.0% | |
| GTGTTGTGTAGGAATTGTGG+AGG | - | chr1_2:10374540-10374559 | None:intergenic | 45.0% | |
| !! | GTGGTGTTGTGTAGGAATTG+TGG | - | chr1_2:10374543-10374562 | None:intergenic | 45.0% |
| !! | GATTGGTTGTGTTGGGTTGA+CGG | + | chr1_2:10374804-10374823 | Msa0055410:intron | 45.0% |
| GGTTGACGGTGTAAAACTCT+TGG | + | chr1_2:10374818-10374837 | Msa0055410:intron | 45.0% | |
| TCTTCTCACTATCAGTTGCC+AGG | - | chr1_2:10374859-10374878 | None:intergenic | 45.0% | |
| ! | GGCAACTGATAGTGAGAAGA+AGG | + | chr1_2:10374859-10374878 | Msa0055410:CDS | 45.0% |
| AACTTCAGAGCAGCACATTG+GGG | + | chr1_2:10374914-10374933 | Msa0055410:CDS | 45.0% | |
| ! | GATTTGCTTGTTGCTGCAGA+TGG | + | chr1_2:10375088-10375107 | Msa0055410:CDS | 45.0% |
| GTTGTCTCTCTTCAATCCGT+CGG | + | chr1_2:10375110-10375129 | Msa0055410:CDS | 45.0% | |
| GCGTTGTTAATCCAGAAGAG+CGG | + | chr1_2:10375351-10375370 | Msa0055410:intron | 45.0% | |
| ACTGCTATATTCCGCTCTTC+TGG | - | chr1_2:10375365-10375384 | None:intergenic | 45.0% | |
| GGTATTCAGGCTATTGTGCT+TGG | + | chr1_2:10375625-10375644 | Msa0055410:intron | 45.0% | |
| GAGGATTCAGAAACCATCAC+AGG | + | chr1_2:10375675-10375694 | Msa0055410:CDS | 45.0% | |
| TGCCTTCTTGATACCTGTGA+TGG | - | chr1_2:10375691-10375710 | None:intergenic | 45.0% | |
| !! | TTGTACTTTGACTTGGCCTC+AGG | + | chr1_2:10375732-10375751 | Msa0055410:CDS | 45.0% |
| TAACACACTGTGTGTACCTG+AGG | - | chr1_2:10375751-10375770 | None:intergenic | 45.0% | |
| CTTACCTTTACTTCAGGCTC+TGG | - | chr1_2:10375822-10375841 | None:intergenic | 45.0% | |
| GTCCCAGAATATCTTCTCCA+AGG | - | chr1_2:10376705-10376724 | None:intergenic | 45.0% | |
| !! | TGGGACAATGTGGTATTGGT+AGG | + | chr1_2:10376719-10376738 | Msa0055410:CDS | 45.0% |
| !! | GGGACAATGTGGTATTGGTA+GGG | + | chr1_2:10376720-10376739 | Msa0055410:CDS | 45.0% |
| !! | GGACAATGTGGTATTGGTAG+GGG | + | chr1_2:10376721-10376740 | Msa0055410:CDS | 45.0% |
| TAAGGTAGTGAGGCGTAGTA+GGG | - | chr1_2:10376757-10376776 | None:intergenic | 45.0% | |
| ! | CCTTGCATGAAGAACTTGCT+TGG | - | chr1_2:10376900-10376919 | None:intergenic | 45.0% |
| CCAAGCAAGTTCTTCATGCA+AGG | + | chr1_2:10376897-10376916 | Msa0055410:CDS | 45.0% | |
| !! | CTTGCTGACTTGGGATCAAA+AGG | - | chr1_2:10376968-10376987 | None:intergenic | 45.0% |
| ! | CTTTTGATCCCAAGTCAGCA+AGG | + | chr1_2:10376966-10376985 | Msa0055410:CDS | 45.0% |
| !! | TCCTCTTTCCTTGCTGACTT+GGG | - | chr1_2:10376977-10376996 | None:intergenic | 45.0% |
| ACACTAATAAGGCGATTGCC+TGG | + | chr1_2:10377105-10377124 | Msa0055410:three_prime_UTR | 45.0% | |
| CACTAATAAGGCGATTGCCT+GGG | + | chr1_2:10377106-10377125 | Msa0055410:three_prime_UTR | 45.0% | |
| GCACATGCCCTTATCTTAGC+TGG | + | chr1_2:10374399-10374418 | Msa0055410:CDS | 50.0% | |
| !!! | GAGGGGAGGTGGTTTTTTCA+AGG | - | chr1_2:10374440-10374459 | None:intergenic | 50.0% |
| AGTAGGACTTCCAGTTGGAG+GGG | - | chr1_2:10374457-10374476 | None:intergenic | 50.0% | |
| CAGTAGGACTTCCAGTTGGA+GGG | - | chr1_2:10374458-10374477 | None:intergenic | 50.0% | |
| !! | GTGGATGAGTGGTGTTGTGT+AGG | - | chr1_2:10374551-10374570 | None:intergenic | 50.0% |
| GCACATTGGGGAGATCTTCA+TGG | + | chr1_2:10374926-10374945 | Msa0055410:CDS | 50.0% | |
| ! | TGTCAAATTGGCGGACACAG+CGG | - | chr1_2:10375528-10375547 | None:intergenic | 50.0% |
| TCAGGCTATTGTGCTTGGAG+AGG | + | chr1_2:10375630-10375649 | Msa0055410:CDS | 50.0% | |
| CAGGCTATTGTGCTTGGAGA+GGG | + | chr1_2:10375631-10375650 | Msa0055410:CDS | 50.0% | |
| AGGCTATTGTGCTTGGAGAG+GGG | + | chr1_2:10375632-10375651 | Msa0055410:CDS | 50.0% | |
| TCAGCCAGAGCCTGAAGTAA+AGG | + | chr1_2:10375815-10375834 | Msa0055410:CDS | 50.0% | |
| CTAAGGTAGTGAGGCGTAGT+AGG | - | chr1_2:10376758-10376777 | None:intergenic | 50.0% | |
| ! | GTTCTTCATGCAAGGCGTCT+CGG | + | chr1_2:10376905-10376924 | Msa0055410:CDS | 50.0% |
| CGTCTCGGTCGCATAAAACA+AGG | + | chr1_2:10376920-10376939 | Msa0055410:CDS | 50.0% | |
| CGGTCGCATAAAACAAGGTC+TGG | + | chr1_2:10376925-10376944 | Msa0055410:CDS | 50.0% | |
| TCCCAAGTCAGCAAGGAAAG+AGG | + | chr1_2:10376973-10376992 | Msa0055410:CDS | 50.0% | |
| ! | CTCCTCTTTCCTTGCTGACT+TGG | - | chr1_2:10376978-10376997 | None:intergenic | 50.0% |
| !! | AGCAAGGAAAGAGGAGTGTC+AGG | + | chr1_2:10376982-10377001 | Msa0055410:CDS | 50.0% |
| AAAACCACCTCCCCTCCAAC+TGG | + | chr1_2:10374444-10374463 | Msa0055410:CDS | 55.0% | |
| CCAGTAGGACTTCCAGTTGG+AGG | - | chr1_2:10374459-10374478 | None:intergenic | 55.0% | |
| CCTCCAACTGGAAGTCCTAC+TGG | + | chr1_2:10374456-10374475 | Msa0055410:CDS | 55.0% | |
| GCACCAGTAGGACTTCCAGT+TGG | - | chr1_2:10374462-10374481 | None:intergenic | 55.0% | |
| ACTGGAAGTCCTACTGGTGC+AGG | + | chr1_2:10374462-10374481 | Msa0055410:CDS | 55.0% | |
| AGTCCTACTGGTGCAGGTCT+TGG | + | chr1_2:10374468-10374487 | Msa0055410:CDS | 55.0% | |
| AGTCCAAGACCTGCACCAGT+AGG | - | chr1_2:10374474-10374493 | None:intergenic | 55.0% | |
| ! | TGGGTTGACGGTGTAGAACC+TGG | + | chr1_2:10374838-10374857 | Msa0055410:intron | 55.0% |
| ATCCCCTGACTCCATCTGGT+GGG | + | chr1_2:10376133-10376152 | Msa0055410:intron | 55.0% | |
| TGTACAACGCTCCCACCAGA+TGG | - | chr1_2:10376147-10376166 | None:intergenic | 55.0% | |
| ACTTCCAGTTGGAGGGGAGG+TGG | - | chr1_2:10374451-10374470 | None:intergenic | 60.0% | |
| AGGACTTCCAGTTGGAGGGG+AGG | - | chr1_2:10374454-10374473 | None:intergenic | 60.0% | |
| CAGATGGAGTCAGGGGATGG+TGG | - | chr1_2:10376131-10376150 | None:intergenic | 60.0% | |
| CACCATCCCCTGACTCCATC+TGG | + | chr1_2:10376129-10376148 | Msa0055410:intron | 60.0% | |
| CACCAGATGGAGTCAGGGGA+TGG | - | chr1_2:10376134-10376153 | None:intergenic | 60.0% | |
| CATCCCCTGACTCCATCTGG+TGG | + | chr1_2:10376132-10376151 | Msa0055410:intron | 60.0% | |
| CTCCCACCAGATGGAGTCAG+GGG | - | chr1_2:10376138-10376157 | None:intergenic | 60.0% | |
| GCTCCCACCAGATGGAGTCA+GGG | - | chr1_2:10376139-10376158 | None:intergenic | 60.0% | |
| CGCTCCCACCAGATGGAGTC+AGG | - | chr1_2:10376140-10376159 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 10374277 | 10377262 | 10374277 | ID=Msa0055410;Name=Msa0055410 |
| chr1_2 | mRNA | 10374277 | 10377262 | 10374277 | ID=Msa0055410-mRNA-1;Parent=Msa0055410;Name=Msa0055410-mRNA-1;_AED=0.11;_eAED=0.11;_QI=56|1|1|1|1|1|4|184|428 |
| chr1_2 | exon | 10374277 | 10374584 | 10374277 | ID=Msa0055410-mRNA-1:exon:3861;Parent=Msa0055410-mRNA-1 |
| chr1_2 | exon | 10374854 | 10375158 | 10374854 | ID=Msa0055410-mRNA-1:exon:3862;Parent=Msa0055410-mRNA-1 |
| chr1_2 | exon | 10375626 | 10375836 | 10375626 | ID=Msa0055410-mRNA-1:exon:3863;Parent=Msa0055410-mRNA-1 |
| chr1_2 | exon | 10376560 | 10377262 | 10376560 | ID=Msa0055410-mRNA-1:exon:3864;Parent=Msa0055410-mRNA-1 |
| chr1_2 | five_prime_UTR | 10374277 | 10374332 | 10374277 | ID=Msa0055410-mRNA-1:five_prime_utr;Parent=Msa0055410-mRNA-1 |
| chr1_2 | CDS | 10374333 | 10374584 | 10374333 | ID=Msa0055410-mRNA-1:cds;Parent=Msa0055410-mRNA-1 |
| chr1_2 | CDS | 10374854 | 10375158 | 10374854 | ID=Msa0055410-mRNA-1:cds;Parent=Msa0055410-mRNA-1 |
| chr1_2 | CDS | 10375626 | 10375836 | 10375626 | ID=Msa0055410-mRNA-1:cds;Parent=Msa0055410-mRNA-1 |
| chr1_2 | CDS | 10376560 | 10377078 | 10376560 | ID=Msa0055410-mRNA-1:cds;Parent=Msa0055410-mRNA-1 |
| chr1_2 | three_prime_UTR | 10377079 | 10377262 | 10377079 | ID=Msa0055410-mRNA-1:three_prime_utr;Parent=Msa0055410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
