AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1464560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464560 MtrunA17_Chr7g0259891 93.902 164 10 0 2 165 120 283 1.59e-111 318
Msa1464560 MtrunA17_Chr1g0151081 35.976 164 105 0 2 165 239 402 1.44e-27 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464560 AT3G63170.1 61.250 160 62 0 2 161 115 274 1.84e-68 209
Msa1464560 AT2G26310.1 36.364 154 98 0 2 155 234 387 1.07e-25 101
Msa1464560 AT2G26310.5 36.364 154 98 0 2 155 234 387 1.07e-25 101
Msa1464560 AT2G26310.3 35.338 133 86 0 2 134 234 366 6.06e-18 79.7
Msa1464560 AT2G26310.2 31.169 154 81 1 2 155 234 362 1.65e-16 75.9
Msa1464560 AT2G26310.4 34.483 116 75 1 2 116 234 349 5.18e-13 65.9

Find 39 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGTCTGTCTGAGAAATA+TGG 0.266325 tig0044350:+260 Msa1464560:CDS
AATGAGATATGAATAAATTC+AGG 0.340733 tig0044350:-2330 None:intergenic
TCTTTAGCTTGTTTATCAAA+TGG 0.380206 tig0044350:-2115 None:intergenic
CTCCTTGTTTCCCTTCAATT+CGG 0.388808 tig0044350:-297 None:intergenic
CCTCGCCAACGTATAAATCT+AGG 0.389464 tig0044350:-2090 None:intergenic
ATAATAAAGAATTGCTTCAT+AGG 0.390871 tig0044350:+459 Msa1464560:CDS
AGCACAAGGGATGCATCAAC+AGG 0.396096 tig0044350:-2285 None:intergenic
GGAGTTTAATGAGGATCTAC+TGG 0.431474 tig0044350:+316 Msa1464560:CDS
ACCTACACAGGAGTTTACTT+TGG 0.433749 tig0044350:-2063 None:intergenic
ATGATATACATTTAACAGTA+AGG 0.442640 tig0044350:+342 Msa1464560:CDS
TGCAGTTGACGGACAGGAAG+TGG 0.444813 tig0044350:+2033 Msa1464560:intron
AAAATTATGTTGTTTGTTGA+AGG 0.475659 tig0044350:+209 Msa1464560:exon
GATGTCTGTCTGAGAAATAT+GGG 0.494327 tig0044350:+261 Msa1464560:CDS
AACTTTGGAGGTAAGAAGCC+AGG 0.495322 tig0044350:-2153 None:intergenic
GGTTGTTGCAGTTGACGGAC+AGG 0.501877 tig0044350:+2027 Msa1464560:intron
ATGAGATATGAATAAATTCA+GGG 0.526922 tig0044350:-2329 None:intergenic
TTGTTTCCCTTCAATTCGGA+CGG 0.540407 tig0044350:-293 None:intergenic
AGTGCATTTGAAGAGTCTGT+TGG 0.545083 tig0044350:+407 Msa1464560:CDS
GTCCGAATTGAAGGGAAACA+AGG 0.569239 tig0044350:+295 Msa1464560:CDS
TCAATCCTAGATTTATACGT+TGG 0.577790 tig0044350:+2085 Msa1464560:CDS
ATTCATCTCACAAGAGAGAA+GGG 0.583527 tig0044350:+942 Msa1464560:CDS
AATTCATCTCACAAGAGAGA+AGG 0.588462 tig0044350:+941 Msa1464560:CDS
GGGAAACAAGGAGTTTAATG+AGG 0.593911 tig0044350:+307 Msa1464560:CDS
CTAGAGGCATGGAATTAGCA+AGG 0.595016 tig0044350:-2216 None:intergenic
GAACAAAGTTACTAGAGGCA+TGG 0.595989 tig0044350:-2227 None:intergenic
AATCTAGGATTGACCTACAC+AGG 0.602235 tig0044350:-2075 None:intergenic
GCAGTTGACGGACAGGAAGT+GGG 0.604670 tig0044350:+2034 Msa1464560:intron
CCTAGATTTATACGTTGGCG+AGG 0.617834 tig0044350:+2090 Msa1464560:CDS
TTCTTGTCTCTTGAAGCACA+AGG 0.619784 tig0044350:-2299 None:intergenic
ATTGAATCCATGTCCTACAA+AGG 0.620352 tig0044350:-2193 None:intergenic
ATGAAATCAAAATACCTCGT+GGG 0.630447 tig0044350:+913 Msa1464560:CDS
TCTTGTCTCTTGAAGCACAA+GGG 0.643717 tig0044350:-2298 None:intergenic
GATGAAATCAAAATACCTCG+TGG 0.663911 tig0044350:+912 Msa1464560:CDS
TCCAAAGTAAACTCCTGTGT+AGG 0.666013 tig0044350:+2062 Msa1464560:CDS
AGAAGAAATAGAGCTCAACC+TGG 0.668098 tig0044350:+2135 Msa1464560:CDS
GATTGAGCATTCGTTCTGTG+AGG 0.683191 tig0044350:+384 Msa1464560:CDS
GCACAAGGGATGCATCAACA+GGG 0.683819 tig0044350:-2284 None:intergenic
ATATTGAACAAAGTTACTAG+AGG 0.703138 tig0044350:-2232 None:intergenic
AGATGAATTACAGACCCACG+AGG 0.819642 tig0044350:-927 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG - tig0044350:671-690 None:intergenic 0.0%
!! AAAAAAAAAAAAAAAAAAAA+AGG - tig0044350:671-690 None:intergenic 0.0%
!! TATAAATGAAATATTATTGT+GGG - tig0044350:1275-1294 None:intergenic 10.0%
!! ATATAAATGAAATATTATTG+TGG - tig0044350:1276-1295 None:intergenic 10.0%
!! TATAAATGAAATATTATTGT+GGG - tig0044350:1275-1294 None:intergenic 10.0%
!! ATATAAATGAAATATTATTG+TGG - tig0044350:1276-1295 None:intergenic 10.0%
!! TAGGTTCTTAAAAAAAAAAA+AGG - tig0044350:1594-1613 None:intergenic 15.0%
!! TAGGTTCTTAAAAAAAAAAA+AGG - tig0044350:1594-1613 None:intergenic 15.0%
!!! AAAATTATGTTGTTTGTTGA+AGG + tig0044350:209-228 Msa1464560:exon 20.0%
!! ATGATATACATTTAACAGTA+AGG + tig0044350:342-361 Msa1464560:CDS 20.0%
!! ATAATAAAGAATTGCTTCAT+AGG + tig0044350:459-478 Msa1464560:CDS 20.0%
!!! ACTTTAGTTATCTTTTTCAT+AGG + tig0044350:498-517 Msa1464560:intron 20.0%
!! TTACAGTAAAAAAAAAGTAG+CGG - tig0044350:1449-1468 None:intergenic 20.0%
!! ATTCTAGTAATGTTGAAATA+TGG + tig0044350:1509-1528 Msa1464560:intron 20.0%
!! TTCTAGTAATGTTGAAATAT+GGG + tig0044350:1510-1529 Msa1464560:intron 20.0%
!! TAAAAAAAAAAAAGGAGGTA+AGG - tig0044350:1586-1605 None:intergenic 20.0%
!! GTTCTTAAAAAAAAAAAAGG+AGG - tig0044350:1591-1610 None:intergenic 20.0%
!! ATGAGATATGAATAAATTCA+GGG - tig0044350:2332-2351 None:intergenic 20.0%
!! AATGAGATATGAATAAATTC+AGG - tig0044350:2333-2352 None:intergenic 20.0%
!!! AAAATTATGTTGTTTGTTGA+AGG + tig0044350:209-228 Msa1464560:exon 20.0%
!! ATGATATACATTTAACAGTA+AGG + tig0044350:342-361 Msa1464560:CDS 20.0%
!! ATAATAAAGAATTGCTTCAT+AGG + tig0044350:459-478 Msa1464560:CDS 20.0%
!!! ACTTTAGTTATCTTTTTCAT+AGG + tig0044350:498-517 Msa1464560:intron 20.0%
!! TTACAGTAAAAAAAAAGTAG+CGG - tig0044350:1449-1468 None:intergenic 20.0%
!! ATTCTAGTAATGTTGAAATA+TGG + tig0044350:1509-1528 Msa1464560:intron 20.0%
!! TTCTAGTAATGTTGAAATAT+GGG + tig0044350:1510-1529 Msa1464560:intron 20.0%
!! TAAAAAAAAAAAAGGAGGTA+AGG - tig0044350:1586-1605 None:intergenic 20.0%
!! GTTCTTAAAAAAAAAAAAGG+AGG - tig0044350:1591-1610 None:intergenic 20.0%
!! ATGAGATATGAATAAATTCA+GGG - tig0044350:2332-2351 None:intergenic 20.0%
!! AATGAGATATGAATAAATTC+AGG - tig0044350:2333-2352 None:intergenic 20.0%
! GAAGAAAAAGATACAAACAA+AGG - tig0044350:640-659 None:intergenic 25.0%
! AAAATGGAAATGCAAATACA+GGG - tig0044350:1001-1020 None:intergenic 25.0%
!! AATTCTGAAAGTTGAGAAAA+TGG - tig0044350:1017-1036 None:intergenic 25.0%
!!! ATATCTTCCCCATTATTTTA+AGG + tig0044350:1292-1311 Msa1464560:intron 25.0%
! ACCCATTTCCTTAAAATAAT+GGG - tig0044350:1303-1322 None:intergenic 25.0%
! AAACCTGACAATTTGATTAT+TGG + tig0044350:1467-1486 Msa1464560:intron 25.0%
! TATCCAATAATCAAATTGTC+AGG - tig0044350:1473-1492 None:intergenic 25.0%
!!! ATACTCGCTTTTTTTTTTTG+TGG - tig0044350:1716-1735 None:intergenic 25.0%
! AACTAAAACACCTAATACTA+GGG - tig0044350:1939-1958 None:intergenic 25.0%
!! CTTTGATGTTAATTTTGTCT+TGG + tig0044350:2006-2025 Msa1464560:intron 25.0%
!!! TCTTTAGCTTGTTTATCAAA+TGG - tig0044350:2118-2137 None:intergenic 25.0%
!!! TTTTTTTAGCAGTCTAACTT+TGG - tig0044350:2171-2190 None:intergenic 25.0%
! TGCTAAAAAAAATCCTTTGT+AGG + tig0044350:2180-2199 Msa1464560:three_prime_UTR 25.0%
! ATATTGAACAAAGTTACTAG+AGG - tig0044350:2235-2254 None:intergenic 25.0%
!! AACAACATAATTTTCCCAAA+TGG - tig0044350:203-222 None:intergenic 25.0%
! GAAGAAAAAGATACAAACAA+AGG - tig0044350:640-659 None:intergenic 25.0%
! AAAATGGAAATGCAAATACA+GGG - tig0044350:1001-1020 None:intergenic 25.0%
!! AATTCTGAAAGTTGAGAAAA+TGG - tig0044350:1017-1036 None:intergenic 25.0%
!!! ATATCTTCCCCATTATTTTA+AGG + tig0044350:1292-1311 Msa1464560:intron 25.0%
! ACCCATTTCCTTAAAATAAT+GGG - tig0044350:1303-1322 None:intergenic 25.0%
! AAACCTGACAATTTGATTAT+TGG + tig0044350:1467-1486 Msa1464560:intron 25.0%
! TATCCAATAATCAAATTGTC+AGG - tig0044350:1473-1492 None:intergenic 25.0%
!!! ATACTCGCTTTTTTTTTTTG+TGG - tig0044350:1716-1735 None:intergenic 25.0%
! AACTAAAACACCTAATACTA+GGG - tig0044350:1939-1958 None:intergenic 25.0%
!! CTTTGATGTTAATTTTGTCT+TGG + tig0044350:2006-2025 Msa1464560:intron 25.0%
!!! TCTTTAGCTTGTTTATCAAA+TGG - tig0044350:2118-2137 None:intergenic 25.0%
!!! TTTTTTTAGCAGTCTAACTT+TGG - tig0044350:2171-2190 None:intergenic 25.0%
! TGCTAAAAAAAATCCTTTGT+AGG + tig0044350:2180-2199 Msa1464560:three_prime_UTR 25.0%
! ATATTGAACAAAGTTACTAG+AGG - tig0044350:2235-2254 None:intergenic 25.0%
GAAAAGATACAAAGAAAGGA+TGG - tig0044350:701-720 None:intergenic 30.0%
AGCAGAAAAGATACAAAGAA+AGG - tig0044350:705-724 None:intergenic 30.0%
! ACTTGGAATACAGTTTTCAA+TGG - tig0044350:781-800 None:intergenic 30.0%
ATGAAATCAAAATACCTCGT+GGG + tig0044350:913-932 Msa1464560:CDS 30.0%
GAAAATGGAAATGCAAATAC+AGG - tig0044350:1002-1021 None:intergenic 30.0%
AATTCAAGTCCTCTAATCAT+TGG + tig0044350:1100-1119 Msa1464560:intron 30.0%
!! TTCTGAAATCCAATGATTAG+AGG - tig0044350:1112-1131 None:intergenic 30.0%
!!! TCCCCATTATTTTAAGGAAA+TGG + tig0044350:1298-1317 Msa1464560:intron 30.0%
CCCATTTCCTTAAAATAATG+GGG - tig0044350:1302-1321 None:intergenic 30.0%
!!! CCCCATTATTTTAAGGAAAT+GGG + tig0044350:1299-1318 Msa1464560:intron 30.0%
CACCCATTTCCTTAAAATAA+TGG - tig0044350:1304-1323 None:intergenic 30.0%
!!! CATTATTTTAAGGAAATGGG+TGG + tig0044350:1302-1321 Msa1464560:intron 30.0%
! GGTTTAAGTGTTATTAGGTT+CGG - tig0044350:1565-1584 None:intergenic 30.0%
! GGTAAGGTTTAAGTGTTATT+AGG - tig0044350:1570-1589 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + tig0044350:1668-1687 Msa1464560:intron 30.0%
!!! TTTTTTTTTTTGTGGTGGCT+GGG - tig0044350:1708-1727 None:intergenic 30.0%
TAAGTATCAAGTACCTTACA+CGG + tig0044350:1757-1776 Msa1464560:intron 30.0%
AGTTAAACTTTCAACTCAGT+TGG + tig0044350:1821-1840 Msa1464560:intron 30.0%
ACTAAAACACCTAATACTAG+GGG - tig0044350:1938-1957 None:intergenic 30.0%
CAACTAAAACACCTAATACT+AGG - tig0044350:1940-1959 None:intergenic 30.0%
!!! TTAGGTGTTTTAGTTGCTTT+TGG + tig0044350:1944-1963 Msa1464560:intron 30.0%
TCAATGCTAAATCACAACAA+GGG + tig0044350:1982-2001 Msa1464560:intron 30.0%
TCAATCCTAGATTTATACGT+TGG + tig0044350:2085-2104 Msa1464560:CDS 30.0%
AAAAAATCCTTTGTAGGACA+TGG + tig0044350:2186-2205 Msa1464560:three_prime_UTR 30.0%
GAAAAGATACAAAGAAAGGA+TGG - tig0044350:701-720 None:intergenic 30.0%
AGCAGAAAAGATACAAAGAA+AGG - tig0044350:705-724 None:intergenic 30.0%
! ACTTGGAATACAGTTTTCAA+TGG - tig0044350:781-800 None:intergenic 30.0%
ATGAAATCAAAATACCTCGT+GGG + tig0044350:913-932 Msa1464560:CDS 30.0%
GAAAATGGAAATGCAAATAC+AGG - tig0044350:1002-1021 None:intergenic 30.0%
AATTCAAGTCCTCTAATCAT+TGG + tig0044350:1100-1119 Msa1464560:intron 30.0%
!! TTCTGAAATCCAATGATTAG+AGG - tig0044350:1112-1131 None:intergenic 30.0%
!!! TCCCCATTATTTTAAGGAAA+TGG + tig0044350:1298-1317 Msa1464560:intron 30.0%
CCCATTTCCTTAAAATAATG+GGG - tig0044350:1302-1321 None:intergenic 30.0%
!!! CCCCATTATTTTAAGGAAAT+GGG + tig0044350:1299-1318 Msa1464560:intron 30.0%
CACCCATTTCCTTAAAATAA+TGG - tig0044350:1304-1323 None:intergenic 30.0%
!!! CATTATTTTAAGGAAATGGG+TGG + tig0044350:1302-1321 Msa1464560:intron 30.0%
! GGTTTAAGTGTTATTAGGTT+CGG - tig0044350:1565-1584 None:intergenic 30.0%
! GGTAAGGTTTAAGTGTTATT+AGG - tig0044350:1570-1589 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + tig0044350:1668-1687 Msa1464560:intron 30.0%
!!! TTTTTTTTTTTGTGGTGGCT+GGG - tig0044350:1708-1727 None:intergenic 30.0%
TAAGTATCAAGTACCTTACA+CGG + tig0044350:1757-1776 Msa1464560:intron 30.0%
AGTTAAACTTTCAACTCAGT+TGG + tig0044350:1821-1840 Msa1464560:intron 30.0%
ACTAAAACACCTAATACTAG+GGG - tig0044350:1938-1957 None:intergenic 30.0%
CAACTAAAACACCTAATACT+AGG - tig0044350:1940-1959 None:intergenic 30.0%
!!! TTAGGTGTTTTAGTTGCTTT+TGG + tig0044350:1944-1963 Msa1464560:intron 30.0%
TCAATGCTAAATCACAACAA+GGG + tig0044350:1982-2001 Msa1464560:intron 30.0%
TCAATCCTAGATTTATACGT+TGG + tig0044350:2085-2104 Msa1464560:CDS 30.0%
AAAAAATCCTTTGTAGGACA+TGG + tig0044350:2186-2205 Msa1464560:three_prime_UTR 30.0%
AGATGTCTGTCTGAGAAATA+TGG + tig0044350:260-279 Msa1464560:CDS 35.0%
GATGTCTGTCTGAGAAATAT+GGG + tig0044350:261-280 Msa1464560:CDS 35.0%
GAATTGCTTCATAGGTGAAA+TGG + tig0044350:467-486 Msa1464560:intron 35.0%
TCGTGAGATGAATAAACACT+TGG - tig0044350:798-817 None:intergenic 35.0%
CACTCAGTTGGATTTACATA+TGG - tig0044350:835-854 None:intergenic 35.0%
GATGAAATCAAAATACCTCG+TGG + tig0044350:912-931 Msa1464560:CDS 35.0%
AATTCATCTCACAAGAGAGA+AGG + tig0044350:941-960 Msa1464560:CDS 35.0%
ATTCATCTCACAAGAGAGAA+GGG + tig0044350:942-961 Msa1464560:CDS 35.0%
! TAGTATTGAGTCTAACCGAA+AGG + tig0044350:1185-1204 Msa1464560:intron 35.0%
! AGTATTGAGTCTAACCGAAA+GGG + tig0044350:1186-1205 Msa1464560:intron 35.0%
! TTTGGAATGTGGTATATCAG+GGG - tig0044350:1215-1234 None:intergenic 35.0%
! GTTTGGAATGTGGTATATCA+GGG - tig0044350:1216-1235 None:intergenic 35.0%
! AGTTTGGAATGTGGTATATC+AGG - tig0044350:1217-1236 None:intergenic 35.0%
TGATATACCACATTCCAAAC+TGG + tig0044350:1216-1235 Msa1464560:intron 35.0%
TAAGATTCATGTAGCCAGTT+TGG - tig0044350:1233-1252 None:intergenic 35.0%
! TATACTCGCTCTTTTAAGCA+GGG - tig0044350:1620-1639 None:intergenic 35.0%
! TTATACTCGCTCTTTTAAGC+AGG - tig0044350:1621-1640 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG + tig0044350:1673-1692 Msa1464560:intron 35.0%
GCATAATATATGCAAGGTCT+GGG + tig0044350:1674-1693 Msa1464560:intron 35.0%
CATAATATATGCAAGGTCTG+GGG + tig0044350:1675-1694 Msa1464560:intron 35.0%
!!! TTTTTTTTTTGTGGTGGCTG+GGG - tig0044350:1707-1726 None:intergenic 35.0%
!!! CTTTTTTTTTTTGTGGTGGC+TGG - tig0044350:1709-1728 None:intergenic 35.0%
!!! CTCGCTTTTTTTTTTTGTGG+TGG - tig0044350:1713-1732 None:intergenic 35.0%
TGGTGATTTCAAATTCGAAC+TGG + tig0044350:1841-1860 Msa1464560:intron 35.0%
!!! TTTTTAGAGCCCCTAGTATT+AGG + tig0044350:1926-1945 Msa1464560:intron 35.0%
GTCAATGCTAAATCACAACA+AGG + tig0044350:1981-2000 Msa1464560:intron 35.0%
! TTTTAGCAGTCTAACTTTGG+AGG - tig0044350:2168-2187 None:intergenic 35.0%
ATTGAATCCATGTCCTACAA+AGG - tig0044350:2196-2215 None:intergenic 35.0%
AGATGTCTGTCTGAGAAATA+TGG + tig0044350:260-279 Msa1464560:CDS 35.0%
GATGTCTGTCTGAGAAATAT+GGG + tig0044350:261-280 Msa1464560:CDS 35.0%
GAATTGCTTCATAGGTGAAA+TGG + tig0044350:467-486 Msa1464560:intron 35.0%
TCGTGAGATGAATAAACACT+TGG - tig0044350:798-817 None:intergenic 35.0%
CACTCAGTTGGATTTACATA+TGG - tig0044350:835-854 None:intergenic 35.0%
GATGAAATCAAAATACCTCG+TGG + tig0044350:912-931 Msa1464560:CDS 35.0%
AATTCATCTCACAAGAGAGA+AGG + tig0044350:941-960 Msa1464560:CDS 35.0%
ATTCATCTCACAAGAGAGAA+GGG + tig0044350:942-961 Msa1464560:CDS 35.0%
! TAGTATTGAGTCTAACCGAA+AGG + tig0044350:1185-1204 Msa1464560:intron 35.0%
! AGTATTGAGTCTAACCGAAA+GGG + tig0044350:1186-1205 Msa1464560:intron 35.0%
! TTTGGAATGTGGTATATCAG+GGG - tig0044350:1215-1234 None:intergenic 35.0%
! GTTTGGAATGTGGTATATCA+GGG - tig0044350:1216-1235 None:intergenic 35.0%
! AGTTTGGAATGTGGTATATC+AGG - tig0044350:1217-1236 None:intergenic 35.0%
TGATATACCACATTCCAAAC+TGG + tig0044350:1216-1235 Msa1464560:intron 35.0%
TAAGATTCATGTAGCCAGTT+TGG - tig0044350:1233-1252 None:intergenic 35.0%
! TATACTCGCTCTTTTAAGCA+GGG - tig0044350:1620-1639 None:intergenic 35.0%
! TTATACTCGCTCTTTTAAGC+AGG - tig0044350:1621-1640 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG + tig0044350:1673-1692 Msa1464560:intron 35.0%
GCATAATATATGCAAGGTCT+GGG + tig0044350:1674-1693 Msa1464560:intron 35.0%
CATAATATATGCAAGGTCTG+GGG + tig0044350:1675-1694 Msa1464560:intron 35.0%
!!! TTTTTTTTTTGTGGTGGCTG+GGG - tig0044350:1707-1726 None:intergenic 35.0%
!!! CTTTTTTTTTTTGTGGTGGC+TGG - tig0044350:1709-1728 None:intergenic 35.0%
!!! CTCGCTTTTTTTTTTTGTGG+TGG - tig0044350:1713-1732 None:intergenic 35.0%
TGGTGATTTCAAATTCGAAC+TGG + tig0044350:1841-1860 Msa1464560:intron 35.0%
!!! TTTTTAGAGCCCCTAGTATT+AGG + tig0044350:1926-1945 Msa1464560:intron 35.0%
GTCAATGCTAAATCACAACA+AGG + tig0044350:1981-2000 Msa1464560:intron 35.0%
! TTTTAGCAGTCTAACTTTGG+AGG - tig0044350:2168-2187 None:intergenic 35.0%
ATTGAATCCATGTCCTACAA+AGG - tig0044350:2196-2215 None:intergenic 35.0%
! ATTTTCTCCGTCCGAATTGA+AGG + tig0044350:286-305 Msa1464560:CDS 40.0%
! TTTTCTCCGTCCGAATTGAA+GGG + tig0044350:287-306 Msa1464560:CDS 40.0%
TTGTTTCCCTTCAATTCGGA+CGG - tig0044350:296-315 None:intergenic 40.0%
! CTCCTTGTTTCCCTTCAATT+CGG - tig0044350:300-319 None:intergenic 40.0%
GGGAAACAAGGAGTTTAATG+AGG + tig0044350:307-326 Msa1464560:CDS 40.0%
GGAGTTTAATGAGGATCTAC+TGG + tig0044350:316-335 Msa1464560:CDS 40.0%
AGTGCATTTGAAGAGTCTGT+TGG + tig0044350:407-426 Msa1464560:CDS 40.0%
GGAAGCCGATTGCAAAAATA+CGG + tig0044350:428-447 Msa1464560:CDS 40.0%
GAAGCCGATTGCAAAAATAC+GGG + tig0044350:429-448 Msa1464560:CDS 40.0%
AAGCCGATTGCAAAAATACG+GGG + tig0044350:430-449 Msa1464560:CDS 40.0%
!! AACCCCCGTATTTTTGCAAT+CGG - tig0044350:436-455 None:intergenic 40.0%
CAACATGGAATTCACTCAGT+TGG - tig0044350:847-866 None:intergenic 40.0%
! CATGCTGGTTAACTACAACA+TGG - tig0044350:862-881 None:intergenic 40.0%
TAACCAGCATGCTTTGATGT+AGG + tig0044350:871-890 Msa1464560:intron 40.0%
AAACCTACATCAAAGCATGC+TGG - tig0044350:877-896 None:intergenic 40.0%
TGGAAATGCAAATACAGGGA+AGG - tig0044350:997-1016 None:intergenic 40.0%
CTACCAGTGTTGCCAAATAT+CGG + tig0044350:1330-1349 Msa1464560:intron 40.0%
!!! AGATTTTTTGACAGCAGCCA+TGG + tig0044350:1371-1390 Msa1464560:intron 40.0%
AATCCTTCACAAATTGGCCA+TGG - tig0044350:1391-1410 None:intergenic 40.0%
ATGGCCACCATATAATACCA+TGG - tig0044350:1420-1439 None:intergenic 40.0%
AAAAAAGTAGCGGCAGATCA+TGG - tig0044350:1439-1458 None:intergenic 40.0%
! ATACTCGCTCTTTTAAGCAG+GGG - tig0044350:1619-1638 None:intergenic 40.0%
!! GGGGCTCTAAAAATTTGCAT+GGG - tig0044350:1919-1938 None:intergenic 40.0%
!! AGGGGCTCTAAAAATTTGCA+TGG - tig0044350:1920-1939 None:intergenic 40.0%
TCCAAAGTAAACTCCTGTGT+AGG + tig0044350:2062-2081 Msa1464560:CDS 40.0%
ACCTACACAGGAGTTTACTT+TGG - tig0044350:2066-2085 None:intergenic 40.0%
! AATCTAGGATTGACCTACAC+AGG - tig0044350:2078-2097 None:intergenic 40.0%
AGAAGAAATAGAGCTCAACC+TGG + tig0044350:2135-2154 Msa1464560:CDS 40.0%
GAACAAAGTTACTAGAGGCA+TGG - tig0044350:2230-2249 None:intergenic 40.0%
TCTTGTCTCTTGAAGCACAA+GGG - tig0044350:2301-2320 None:intergenic 40.0%
TTCTTGTCTCTTGAAGCACA+AGG - tig0044350:2302-2321 None:intergenic 40.0%
! ATTTTCTCCGTCCGAATTGA+AGG + tig0044350:286-305 Msa1464560:CDS 40.0%
! TTTTCTCCGTCCGAATTGAA+GGG + tig0044350:287-306 Msa1464560:CDS 40.0%
TTGTTTCCCTTCAATTCGGA+CGG - tig0044350:296-315 None:intergenic 40.0%
! CTCCTTGTTTCCCTTCAATT+CGG - tig0044350:300-319 None:intergenic 40.0%
GGGAAACAAGGAGTTTAATG+AGG + tig0044350:307-326 Msa1464560:CDS 40.0%
GGAGTTTAATGAGGATCTAC+TGG + tig0044350:316-335 Msa1464560:CDS 40.0%
AGTGCATTTGAAGAGTCTGT+TGG + tig0044350:407-426 Msa1464560:CDS 40.0%
GGAAGCCGATTGCAAAAATA+CGG + tig0044350:428-447 Msa1464560:CDS 40.0%
GAAGCCGATTGCAAAAATAC+GGG + tig0044350:429-448 Msa1464560:CDS 40.0%
AAGCCGATTGCAAAAATACG+GGG + tig0044350:430-449 Msa1464560:CDS 40.0%
!! AACCCCCGTATTTTTGCAAT+CGG - tig0044350:436-455 None:intergenic 40.0%
CAACATGGAATTCACTCAGT+TGG - tig0044350:847-866 None:intergenic 40.0%
! CATGCTGGTTAACTACAACA+TGG - tig0044350:862-881 None:intergenic 40.0%
TAACCAGCATGCTTTGATGT+AGG + tig0044350:871-890 Msa1464560:intron 40.0%
AAACCTACATCAAAGCATGC+TGG - tig0044350:877-896 None:intergenic 40.0%
TGGAAATGCAAATACAGGGA+AGG - tig0044350:997-1016 None:intergenic 40.0%
CTACCAGTGTTGCCAAATAT+CGG + tig0044350:1330-1349 Msa1464560:intron 40.0%
!!! AGATTTTTTGACAGCAGCCA+TGG + tig0044350:1371-1390 Msa1464560:intron 40.0%
AATCCTTCACAAATTGGCCA+TGG - tig0044350:1391-1410 None:intergenic 40.0%
ATGGCCACCATATAATACCA+TGG - tig0044350:1420-1439 None:intergenic 40.0%
AAAAAAGTAGCGGCAGATCA+TGG - tig0044350:1439-1458 None:intergenic 40.0%
! ATACTCGCTCTTTTAAGCAG+GGG - tig0044350:1619-1638 None:intergenic 40.0%
!! GGGGCTCTAAAAATTTGCAT+GGG - tig0044350:1919-1938 None:intergenic 40.0%
!! AGGGGCTCTAAAAATTTGCA+TGG - tig0044350:1920-1939 None:intergenic 40.0%
TCCAAAGTAAACTCCTGTGT+AGG + tig0044350:2062-2081 Msa1464560:CDS 40.0%
ACCTACACAGGAGTTTACTT+TGG - tig0044350:2066-2085 None:intergenic 40.0%
! AATCTAGGATTGACCTACAC+AGG - tig0044350:2078-2097 None:intergenic 40.0%
AGAAGAAATAGAGCTCAACC+TGG + tig0044350:2135-2154 Msa1464560:CDS 40.0%
GAACAAAGTTACTAGAGGCA+TGG - tig0044350:2230-2249 None:intergenic 40.0%
TCTTGTCTCTTGAAGCACAA+GGG - tig0044350:2301-2320 None:intergenic 40.0%
TTCTTGTCTCTTGAAGCACA+AGG - tig0044350:2302-2321 None:intergenic 40.0%
GTCCGAATTGAAGGGAAACA+AGG + tig0044350:295-314 Msa1464560:CDS 45.0%
GATTGAGCATTCGTTCTGTG+AGG + tig0044350:384-403 Msa1464560:CDS 45.0%
AGCCGATTGCAAAAATACGG+GGG + tig0044350:431-450 Msa1464560:CDS 45.0%
AGATGAATTACAGACCCACG+AGG - tig0044350:930-949 None:intergenic 45.0%
TATATCAGGGGACACCCTTT+CGG - tig0044350:1203-1222 None:intergenic 45.0%
! CATGTAGCCAGTTTGGAATG+TGG - tig0044350:1226-1245 None:intergenic 45.0%
TAGCCGATATTTGGCAACAC+TGG - tig0044350:1336-1355 None:intergenic 45.0%
! GTGTTGCCAAATATCGGCTA+TGG + tig0044350:1336-1355 Msa1464560:intron 45.0%
! TTGCCAAATATCGGCTATGG+CGG + tig0044350:1339-1358 Msa1464560:intron 45.0%
GGCCAATTTGTGAAGGATTG+TGG + tig0044350:1392-1411 Msa1464560:intron 45.0%
CGCCACAATCCTTCACAAAT+TGG - tig0044350:1397-1416 None:intergenic 45.0%
TGTGGCGCCATGGTATTATA+TGG + tig0044350:1410-1429 Msa1464560:intron 45.0%
!! GCTCTTTTAAGCAGGGGTAT+AGG - tig0044350:1613-1632 None:intergenic 45.0%
AATTACACAAGAGAACCGCG+CGG - tig0044350:1791-1810 None:intergenic 45.0%
GTCTTGGTTGTTGCAGTTGA+CGG + tig0044350:2022-2041 Msa1464560:intron 45.0%
CCTCGCCAACGTATAAATCT+AGG - tig0044350:2093-2112 None:intergenic 45.0%
CCTAGATTTATACGTTGGCG+AGG + tig0044350:2090-2109 Msa1464560:CDS 45.0%
! AACTTTGGAGGTAAGAAGCC+AGG - tig0044350:2156-2175 None:intergenic 45.0%
! CTAGAGGCATGGAATTAGCA+AGG - tig0044350:2219-2238 None:intergenic 45.0%
GTCCGAATTGAAGGGAAACA+AGG + tig0044350:295-314 Msa1464560:CDS 45.0%
GATTGAGCATTCGTTCTGTG+AGG + tig0044350:384-403 Msa1464560:CDS 45.0%
AGCCGATTGCAAAAATACGG+GGG + tig0044350:431-450 Msa1464560:CDS 45.0%
AGATGAATTACAGACCCACG+AGG - tig0044350:930-949 None:intergenic 45.0%
TATATCAGGGGACACCCTTT+CGG - tig0044350:1203-1222 None:intergenic 45.0%
! CATGTAGCCAGTTTGGAATG+TGG - tig0044350:1226-1245 None:intergenic 45.0%
TAGCCGATATTTGGCAACAC+TGG - tig0044350:1336-1355 None:intergenic 45.0%
! GTGTTGCCAAATATCGGCTA+TGG + tig0044350:1336-1355 Msa1464560:intron 45.0%
! TTGCCAAATATCGGCTATGG+CGG + tig0044350:1339-1358 Msa1464560:intron 45.0%
GGCCAATTTGTGAAGGATTG+TGG + tig0044350:1392-1411 Msa1464560:intron 45.0%
CGCCACAATCCTTCACAAAT+TGG - tig0044350:1397-1416 None:intergenic 45.0%
TGTGGCGCCATGGTATTATA+TGG + tig0044350:1410-1429 Msa1464560:intron 45.0%
!! GCTCTTTTAAGCAGGGGTAT+AGG - tig0044350:1613-1632 None:intergenic 45.0%
AATTACACAAGAGAACCGCG+CGG - tig0044350:1791-1810 None:intergenic 45.0%
GTCTTGGTTGTTGCAGTTGA+CGG + tig0044350:2022-2041 Msa1464560:intron 45.0%
CCTCGCCAACGTATAAATCT+AGG - tig0044350:2093-2112 None:intergenic 45.0%
CCTAGATTTATACGTTGGCG+AGG + tig0044350:2090-2109 Msa1464560:CDS 45.0%
! AACTTTGGAGGTAAGAAGCC+AGG - tig0044350:2156-2175 None:intergenic 45.0%
! CTAGAGGCATGGAATTAGCA+AGG - tig0044350:2219-2238 None:intergenic 45.0%
CAGCCATGGCCAATTTGTGA+AGG + tig0044350:1385-1404 Msa1464560:intron 50.0%
GGCGCCATGGTATTATATGG+TGG + tig0044350:1413-1432 Msa1464560:intron 50.0%
GCACAAGGGATGCATCAACA+GGG - tig0044350:2287-2306 None:intergenic 50.0%
AGCACAAGGGATGCATCAAC+AGG - tig0044350:2288-2307 None:intergenic 50.0%
CAGCCATGGCCAATTTGTGA+AGG + tig0044350:1385-1404 Msa1464560:intron 50.0%
GGCGCCATGGTATTATATGG+TGG + tig0044350:1413-1432 Msa1464560:intron 50.0%
GCACAAGGGATGCATCAACA+GGG - tig0044350:2287-2306 None:intergenic 50.0%
AGCACAAGGGATGCATCAAC+AGG - tig0044350:2288-2307 None:intergenic 50.0%
GCACCGCCATAGCCGATATT+TGG - tig0044350:1345-1364 None:intergenic 55.0%
TGTGAAGGATTGTGGCGCCA+TGG + tig0044350:1400-1419 Msa1464560:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG - tig0044350:1646-1665 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + tig0044350:1643-1662 Msa1464560:intron 55.0%
CGTGAGCTTAGCTCAGTTGG+TGG + tig0044350:1646-1665 Msa1464560:intron 55.0%
! CGCGGAGGTATAACCGTGTA+AGG - tig0044350:1773-1792 None:intergenic 55.0%
TACACGGTTATACCTCCGCG+CGG + tig0044350:1773-1792 Msa1464560:intron 55.0%
! GGTTGTTGCAGTTGACGGAC+AGG + tig0044350:2027-2046 Msa1464560:intron 55.0%
! TGCAGTTGACGGACAGGAAG+TGG + tig0044350:2033-2052 Msa1464560:intron 55.0%
! GCAGTTGACGGACAGGAAGT+GGG + tig0044350:2034-2053 Msa1464560:intron 55.0%
GCACCGCCATAGCCGATATT+TGG - tig0044350:1345-1364 None:intergenic 55.0%
TGTGAAGGATTGTGGCGCCA+TGG + tig0044350:1400-1419 Msa1464560:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG - tig0044350:1646-1665 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + tig0044350:1643-1662 Msa1464560:intron 55.0%
CGTGAGCTTAGCTCAGTTGG+TGG + tig0044350:1646-1665 Msa1464560:intron 55.0%
! CGCGGAGGTATAACCGTGTA+AGG - tig0044350:1773-1792 None:intergenic 55.0%
TACACGGTTATACCTCCGCG+CGG + tig0044350:1773-1792 Msa1464560:intron 55.0%
! GGTTGTTGCAGTTGACGGAC+AGG + tig0044350:2027-2046 Msa1464560:intron 55.0%
! TGCAGTTGACGGACAGGAAG+TGG + tig0044350:2033-2052 Msa1464560:intron 55.0%
! GCAGTTGACGGACAGGAAGT+GGG + tig0044350:2034-2053 Msa1464560:intron 55.0%
TACACAAGAGAACCGCGCGG+AGG - tig0044350:1788-1807 None:intergenic 60.0%
TACACAAGAGAACCGCGCGG+AGG - tig0044350:1788-1807 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0044350 gene 203 2420 203 ID=Msa1464560;Name=Msa1464560
tig0044350 mRNA 203 2420 203 ID=Msa1464560-mRNA-1;Parent=Msa1464560;Name=Msa1464560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=12|1|1|1|1|1|3|243|165
tig0044350 exon 203 480 203 ID=Msa1464560-mRNA-1:exon:24481;Parent=Msa1464560-mRNA-1
tig0044350 exon 893 984 893 ID=Msa1464560-mRNA-1:exon:24482;Parent=Msa1464560-mRNA-1
tig0044350 exon 2038 2420 2038 ID=Msa1464560-mRNA-1:exon:24483;Parent=Msa1464560-mRNA-1
tig0044350 five_prime_UTR 203 214 203 ID=Msa1464560-mRNA-1:five_prime_utr;Parent=Msa1464560-mRNA-1
tig0044350 CDS 215 480 215 ID=Msa1464560-mRNA-1:cds;Parent=Msa1464560-mRNA-1
tig0044350 CDS 893 984 893 ID=Msa1464560-mRNA-1:cds;Parent=Msa1464560-mRNA-1
tig0044350 CDS 2038 2177 2038 ID=Msa1464560-mRNA-1:cds;Parent=Msa1464560-mRNA-1
tig0044350 three_prime_UTR 2178 2420 2178 ID=Msa1464560-mRNA-1:three_prime_utr;Parent=Msa1464560-mRNA-1
Gene Sequence

>Msa1464560

ATGTTGTTTGTTGAAGGTGTTTATGCTGACGATGATGACGTAAAGAGATGTCTGTCTGAGAAATATGGGAAATTTTCTCCGTCCGAATTGAAGGGAAACAAGGAGTTTAATGAGGATCTACTGGAAAATGATATACATTTAACAGTAAGGCTTCAAATTGTTTATAGTAGATTGAGCATTCGTTCTGTGAGGAGTGCATTTGAAGAGTCTGTTGGAAGCCGATTGCAAAAATACGGGGGTTCAGATAATAAAGAATTGCTTCATAGGTTTACTTCACAGTTTAGAGATGAAATCAAAATACCTCGTGGGTCTGTAATTCATCTCACAAGAGAGAAGGGACATGTTCTTCGCACAACAATTGACGGACAGGAAGTGGGAAGCATCCAAAGTAAACTCCTGTGTAGGTCAATCCTAGATTTATACGTTGGCGAGGAACCATTTGATAAACAAGCTAAAGAAGAAATAGAGCTCAACCTGGCTTCTTACCTCCAAAGTTAG

Protein sequence

>Msa1464560

MLFVEGVYADDDDVKRCLSEKYGKFSPSELKGNKEFNEDLLENDIHLTVRLQIVYSRLSIRSVRSAFEESVGSRLQKYGGSDNKELLHRFTSQFRDEIKIPRGSVIHLTREKGHVLRTTIDGQEVGSIQSKLLCRSILDLYVGEEPFDKQAKEEIELNLASYLQS*