AlfalfaGEDB | Msa1171690

M. sativa cultivar zhongmu-4 / Msa1171690

KEGG: -
GO: -
PFAM: PF17874.4

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1171690	XP_003602279.2	95.390	564	26	0	18	581	1	564	0.0	1058

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1171690	sp\|P0CI65\|NPHP3_DANRE	24.932	369	247	5	190	549	899	1246	2.83e-12	73.6
Msa1171690	sp\|P0CI65\|NPHP3_DANRE	24.148	352	224	6	181	501	941	1280	4.86e-12	72.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa1171690	0.836243	1.049250e-56	-8.615850e-47
Msa0001460	Msa1171690	0.812595	3.918296e-51	-8.615850e-47
Msa0001950	Msa1171690	0.851798	7.016373e-61	-8.615850e-47
Msa0003470	Msa1171690	0.830523	2.800120e-55	-8.615850e-47
Msa0006700	Msa1171690	0.818645	1.759724e-52	-8.615850e-47
Msa0008850	Msa1171690	0.842430	2.598207e-58	-8.615850e-47
Msa0011720	Msa1171690	0.814040	1.886233e-51	-8.615850e-47
Msa0014920	Msa1171690	0.813283	2.768838e-51	-8.615850e-47
Msa0017120	Msa1171690	0.849403	3.307536e-60	-8.615850e-47
Msa0017940	Msa1171690	0.843229	1.593332e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1171690	MtrunA17_Chr3g0127031	95.390	564	26	0	18	581	1	564	0.0	1058

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1171690	AT5G53080.1	57.576	528	222	1	56	581	37	564	0.0	598

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Find 133 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTCCCCTGCAGAGA+AGG	0.530458	8_1:-1516514	Msa1171690:CDS
AAAATGACTTTCTGCATCAT+TGG	0.373578	8_1:+1517809	None:intergenic
AAAGAATTGGAGGAATTGTT+CGG	0.497560	8_1:-1519263	Msa1171690:CDS
AAAGCGCCGTATTGGGCTGT+GGG	0.609680	8_1:+1519861	None:intergenic
AAAGGCTAAGGAGTGTGAAT+TGG	0.440607	8_1:+1516269	None:intergenic
AAAGTATATGGAGAAAATGA+TGG	0.522288	8_1:-1517667	Msa1171690:CDS
AAATAGAGGTGCTGAAAGTA+AGG	0.452020	8_1:-1517886	Msa1171690:CDS
AAATGATGGAAGAATTGGAA+TGG	0.582126	8_1:-1517653	Msa1171690:CDS
AACATATACACAAAAGTATA+TGG	0.333209	8_1:-1517679	Msa1171690:CDS
AACCTGAATCCAATGAAAGA+GGG	0.613573	8_1:+1519747	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGCTATCTGTTCTTCTATT+AGG	-	chr8_1:1516526-1516545	Msa1171690:CDS	30.0%
AGCTATACATTATACCCATT+AGG	-	chr8_1:1516643-1516662	Msa1171690:CDS	30.0%
AAAGAATTGGAGGAATTGTT+CGG	-	chr8_1:1516883-1516902	Msa1171690:CDS	30.0%
ATTTGCATTAAGAAGGTCTA+TGG	+	chr8_1:1516950-1516969	None:intergenic	30.0%
ATTATGAAATGGTGAAAGAG+CGG	-	chr8_1:1516968-1516987	Msa1171690:CDS	30.0%
TTCAACTAATTCATACCATG+CGG	+	chr8_1:1517174-1517193	None:intergenic	30.0%
CTATGATCATCCAATAAATC+TGG	+	chr8_1:1517278-1517297	None:intergenic	30.0%
CAGATTTATTGGATGATCAT+AGG	-	chr8_1:1517276-1517295	Msa1171690:intron	30.0%
TTGTACAATGAGAATAAAGG+AGG	-	chr8_1:1517308-1517327	Msa1171690:intron	30.0%
TTGACTGCATATATTATTGG+TGG	+	chr8_1:1517414-1517433	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	1516268	1519900	1516268	ID=Msa1171690;Name=Msa1171690
chr8_1	mRNA	1516268	1519900	1516268	ID=Msa1171690-mRNA-1;Parent=Msa1171690;Name=Msa1171690-mRNA-1;_AED=0.08;_eAED=0.08;_QI=50\|1\|1\|1\|1\|1\|9\|201\|581
chr8_1	exon	1516268	1516719	1516268	ID=Msa1171690-mRNA-1:exon:476;Parent=Msa1171690-mRNA-1
chr8_1	exon	1516875	1517206	1516875	ID=Msa1171690-mRNA-1:exon:475;Parent=Msa1171690-mRNA-1
chr8_1	exon	1517339	1517474	1517339	ID=Msa1171690-mRNA-1:exon:474;Parent=Msa1171690-mRNA-1
chr8_1	exon	1517617	1517708	1517617	ID=Msa1171690-mRNA-1:exon:473;Parent=Msa1171690-mRNA-1
chr8_1	exon	1517804	1518026	1517804	ID=Msa1171690-mRNA-1:exon:472;Parent=Msa1171690-mRNA-1
chr8_1	exon	1518295	1518445	1518295	ID=Msa1171690-mRNA-1:exon:471;Parent=Msa1171690-mRNA-1
chr8_1	exon	1519070	1519295	1519070	ID=Msa1171690-mRNA-1:exon:470;Parent=Msa1171690-mRNA-1
chr8_1	exon	1519387	1519620	1519387	ID=Msa1171690-mRNA-1:exon:469;Parent=Msa1171690-mRNA-1
chr8_1	exon	1519750	1519900	1519750	ID=Msa1171690-mRNA-1:exon:468;Parent=Msa1171690-mRNA-1
chr8_1	five_prime_UTR	1519851	1519900	1519851	ID=Msa1171690-mRNA-1:five_prime_utr;Parent=Msa1171690-mRNA-1
chr8_1	CDS	1519750	1519850	1519750	ID=Msa1171690-mRNA-1:cds;Parent=Msa1171690-mRNA-1
chr8_1	CDS	1519387	1519620	1519387	ID=Msa1171690-mRNA-1:cds;Parent=Msa1171690-mRNA-1
chr8_1	CDS	1519070	1519295	1519070	ID=Msa1171690-mRNA-1:cds;Parent=Msa1171690-mRNA-1
chr8_1	CDS	1518295	1518445	1518295	ID=Msa1171690-mRNA-1:cds;Parent=Msa1171690-mRNA-1
chr8_1	CDS	1517804	1518026	1517804	ID=Msa1171690-mRNA-1:cds;Parent=Msa1171690-mRNA-1
chr8_1	CDS	1517617	1517708	1517617	ID=Msa1171690-mRNA-1:cds;Parent=Msa1171690-mRNA-1
chr8_1	CDS	1517339	1517474	1517339	ID=Msa1171690-mRNA-1:cds;Parent=Msa1171690-mRNA-1
chr8_1	CDS	1516875	1517206	1516875	ID=Msa1171690-mRNA-1:cds;Parent=Msa1171690-mRNA-1
chr8_1	CDS	1516469	1516719	1516469	ID=Msa1171690-mRNA-1:cds;Parent=Msa1171690-mRNA-1
chr8_1	three_prime_UTR	1516268	1516468	1516268	ID=Msa1171690-mRNA-1:three_prime_utr;Parent=Msa1171690-mRNA-1

Gene Sequence

>Msa1171690

ATGTGTTCCTTCGTTCTGTTGAGTTGCGAAGTTACAGAGGTTTTGTGTACTATGGAAGCTTCATCCTGTTTTGTTCCATCACCCTCTTTCATTGGATTCAGGACTGGCAAAGAGCGTCCACATGCTCTCTCATTGCAAGAATTCAAAAGAATAATAAGCTTTTCAGTTTGTAATCAAAAGCAAAATTACAATCAAAAGCTATACATTATACCCATTAGGACCATTTCTAGCTTCTGCATTTCAAGATCTTTCGCGAAGTCATTAGAACTTGGAGGGACGGGACCACGAAGTGATGCTCGTTTAGGTTATTCAGCTCCCGACGAAGACAATTGGAGCAACTTTGAGAAAGAATTGGAGGAATTGTTCGGTGAAGTGAAAAAAATGATTAAGATGGGAAAGAAAAGTGATGCCATAGACCTTCTTAATGCAAATTATGAAATGGTGAAAGAGCGGCTTAATGCTGGCACTAAAGGCATAGAGGAGGCTGCAGTTTTAGACATATTAGCACTTGGTTACATGGCTGTTGGAGACTTGAAGTATGTTGGTTATCTGTTAAATTCGTTGAAAGAAGTTGTCGATACCTTAAAGGACGATGCACCACATCTAGATTCAATACTTATGCATATGGGAAATATGTATGCCGCATTGAACAAATTTGAAGACTCACTGGACACATATCAAAGGGCTGTCTACATTGTGGAGAGGATTTATGGTAAGGATAGCACTATTCTTGTTACGCCTCATTTGGGTATGGCAAAAGCTCTTGGTTCAATTGGAAAAACAACAAAAGCAATAAAGATATACCAGCATGTAATCACTCTTTTGGAATCAAATAGAGGTGCTGAAAGTAAGGATTTGGTTGTACCTTTACTTAGTCTTGGCAATCTTTTACTGAAAGAAGAAAGAGCCAATGATGCAGAAAGTCATTTTTCTAGGGTTCTAAACATATACACAAAAGTATATGGAGAAAATGATGGAAGAATTGGAATGGCTATGAGCTCTCTAGCTCAAGTGAAGTGTGCTCTAGGGAAGTCAGATGAAGCGATTCATTTATTCAAACGTGCTCTTAAGGTCATGAAGGACTCAAATTACATGTCACCGGAGAACAGTATAATGGAAAAGATGAGGGTAGATCTTGCTGAATTACTCCATACTTCTGGGAGAGGACAAGAAGGAAGAGAGATATTAGAGGAGTGCCTATTGATTACAGAGAGGTACAAAGGAAAGGAGCATCCCAGCTTAGCAACACACATGATAAATCTCGCAACTTCGTACACACGGTCAAAGAATTATGCAGAGGCTGAGCATTTGCTAAGAAGAAGTTTGCAAATCATGATAAAGCATAACGGAACTGATGACCAGTCCATCAGCTTCCCTATGTTGCAACTTGCAGCTACACTATACCATTTGAAAAATGATGAAGAAGCAGAGAAACTCGCCCTGGAGGTTTTACGCATCCGTGAAAAGGCATTTGGAGATCATTCTCTTCCTGTTGGGGAGGCTTTGGACTGCTTAGTGTCTATTCAAGCCAGACTTGGTAAAGATGACAGTGAGTTACTTGAGCTGCTGAGAAGAATCCTGATTATCCAAGAGAAAGGATTCGGACATGAGAGTGAGCAGGTTTTGCTTACCCTTAAAAAAATTGTATACTACTTAGATAAGTTAGGAAGAAAAGATGAAAAGCTTCCCCTGCAGAGAAGGTTATCCGTGCTTAGGAAGAAATATAAGCATATGGTTCATCACTAA

Protein sequence

>Msa1171690

MCSFVLLSCEVTEVLCTMEASSCFVPSPSFIGFRTGKERPHALSLQEFKRIISFSVCNQKQNYNQKLYIIPIRTISSFCISRSFAKSLELGGTGPRSDARLGYSAPDEDNWSNFEKELEELFGEVKKMIKMGKKSDAIDLLNANYEMVKERLNAGTKGIEEAAVLDILALGYMAVGDLKYVGYLLNSLKEVVDTLKDDAPHLDSILMHMGNMYAALNKFEDSLDTYQRAVYIVERIYGKDSTILVTPHLGMAKALGSIGKTTKAIKIYQHVITLLESNRGAESKDLVVPLLSLGNLLLKEERANDAESHFSRVLNIYTKVYGENDGRIGMAMSSLAQVKCALGKSDEAIHLFKRALKVMKDSNYMSPENSIMEKMRVDLAELLHTSGRGQEGREILEECLLITERYKGKEHPSLATHMINLATSYTRSKNYAEAEHLLRRSLQIMIKHNGTDDQSISFPMLQLAATLYHLKNDEEAEKLALEVLRIREKAFGDHSLPVGEALDCLVSIQARLGKDDSELLELLRRILIIQEKGFGHESEQVLLTLKKIVYYLDKLGRKDEKLPLQRRLSVLRKKYKHMVHH*