AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0101450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101450 MtrunA17_Chr1g0154641 95.735 422 18 0 1 422 17 438 0.0 827
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101450 AT1G19340.1 54.610 423 177 6 1 418 1 413 1.21e-151 436

Find 127 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATATGAAAGCCTAATTT+TGG 0.141787 1_3:+8092620 Msa0101450:CDS
AATTTGTCAAACTAGCAATT+TGG 0.190783 1_3:-8093361 None:intergenic
AGAAGAAGGAACGGTGGTTT+TGG 0.197534 1_3:-8089834 None:intergenic
GGCTAGCTAATTCTTTAAAA+AGG 0.240823 1_3:+8093118 Msa0101450:exon
GCTATTTGCTAGAGAAATTA+TGG 0.243019 1_3:+8093028 Msa0101450:CDS
GTGTGAGTAAGTTGCTTAAT+AGG 0.264589 1_3:-8092341 None:intergenic
AATTGCTAGTTTGACAAATT+AGG 0.270371 1_3:+8093364 Msa0101450:three_prime_UTR
TGCTCACAGTATTGCACATT+TGG 0.276460 1_3:-8091134 None:intergenic
CAGGACTGTATCCCAAAATT+AGG 0.282275 1_3:-8092632 None:intergenic
GTTGAAATCGAATGAACTTT+TGG 0.299746 1_3:+8090268 Msa0101450:CDS
ATTTGTCAAACTAGCAATTT+GGG 0.307169 1_3:-8093360 None:intergenic
TGATGATAGTTTATGCCTTA+TGG 0.308292 1_3:+8093152 Msa0101450:three_prime_UTR
ACTACGTAGCTTCTCTCTAT+TGG 0.314267 1_3:-8092393 None:intergenic
GCTCACAGTATTGCACATTT+GGG 0.341446 1_3:-8091133 None:intergenic
AATTCCAACTATAGTTAATC+CGG 0.348241 1_3:-8093229 None:intergenic
AATTCCAACTATAGTTAATC+CGG 0.348241 1_3:-8093284 None:intergenic
ATTTAGATCTCTTCCATCAT+AGG 0.352718 1_3:+8092598 Msa0101450:CDS
AGCAAATAGCTCAACACATC+GGG 0.358566 1_3:-8093015 None:intergenic
ACAACAAAATTATTGAATAC+TGG 0.361221 1_3:-8091170 None:intergenic
TTATTACAGGAGTATATTCC+TGG 0.367870 1_3:+8092981 Msa0101450:CDS
ATCAAAATTTAAGCCTTTGA+AGG 0.371609 1_3:+8092787 Msa0101450:CDS
CTGAATCTTTAGGTAGAGAT+TGG 0.371710 1_3:+8093333 Msa0101450:three_prime_UTR
GGTATTCAACCTTGCCCAAT+AGG 0.371952 1_3:+8092303 Msa0101450:intron
TTGTGGTTTCAACCTTATAA+TGG 0.379434 1_3:+8091801 Msa0101450:CDS
CTTCCCGGATTAACTATAGT+TGG 0.380805 1_3:+8093225 Msa0101450:three_prime_UTR
CTTCCCGGATTAACTATAGT+TGG 0.380805 1_3:+8093280 Msa0101450:three_prime_UTR
TCATTTATGGAAGTCAGATC+TGG 0.383012 1_3:+8091378 Msa0101450:intron
AAGGCGGATCCACCATTATA+AGG 0.384797 1_3:-8091813 None:intergenic
TCAAGAAAACCTCCAATTGC+AGG 0.388778 1_3:+8092845 Msa0101450:CDS
AAGTGATGCCCTGCTTCTAC+TGG 0.394166 1_3:+8093499 Msa0101450:three_prime_UTR
GGTGTGGTCAGATTTATTAC+AGG 0.398429 1_3:+8092968 Msa0101450:intron
CTGTGTTTGAATTAGAGAAT+TGG 0.402019 1_3:-8089715 None:intergenic
TTATGGCTGGATGTGTTGCT+TGG 0.404184 1_3:+8093045 Msa0101450:CDS
CCCAAAATTAGGCTTTCATA+TGG 0.405670 1_3:-8092621 None:intergenic
AAGGTGCCCTTGTAGCATTA+TGG 0.408636 1_3:+8092366 Msa0101450:CDS
TATGGCTGGATGTGTTGCTT+GGG 0.412627 1_3:+8093046 Msa0101450:CDS
CATGTGATTATGAGCATTCC+TGG 0.421682 1_3:+8092815 Msa0101450:CDS
GTCGGTCCATCTGAATCTTT+AGG 0.423716 1_3:+8093323 Msa0101450:three_prime_UTR
AGGTGCCCTTGTAGCATTAT+GGG 0.424361 1_3:+8092367 Msa0101450:CDS
TCCACTGCTCACAACTCTGC+TGG 0.440751 1_3:-8089623 None:intergenic
CAGATTCGCAATCTCATTCC+CGG 0.441058 1_3:+8091403 Msa0101450:CDS
GGCTTTCATATGGCCTATGA+TGG 0.441407 1_3:-8092611 None:intergenic
CTATTGCAGGTGAAAGCAAA+TGG 0.445321 1_3:+8092561 Msa0101450:intron
AATTGCACTTCAACGCCATC+AGG 0.459373 1_3:+8089928 Msa0101450:CDS
CTATCGTTATTCCACAAATC+AGG 0.459548 1_3:+8089686 Msa0101450:CDS
TAATGCTACAAGGGCACCTT+CGG 0.461852 1_3:-8092363 None:intergenic
CAGACAACAATACCTGCAAT+TGG 0.468245 1_3:-8092857 None:intergenic
TATAATGGTGGATCCGCCTT+GGG 0.469513 1_3:+8091816 Msa0101450:CDS
TAAACTCTCCCAGTAGAAGC+AGG 0.470930 1_3:-8093508 None:intergenic
ATTGGTATATACCTGATTTG+TGG 0.470959 1_3:-8089697 None:intergenic
GAGATCTAAATCACCAATCA+AGG 0.471124 1_3:-8092586 None:intergenic
GCTCACAACTCTGCTGGTGC+TGG 0.472627 1_3:-8089617 None:intergenic
AGAAACAGTGAAGCGGTTGT+AGG 0.473527 1_3:-8089771 None:intergenic
TTTGAAGAAACGAGGATAGT+AGG 0.474415 1_3:-8089801 None:intergenic
AGCAGAGTTGTGAGCAGTGG+AGG 0.475814 1_3:+8089625 Msa0101450:five_prime_UTR
TTGCGTTTAGTGGGAGAAGA+AGG 0.481280 1_3:-8089848 None:intergenic
AATATCTAGAATCTTGAAAG+TGG 0.484530 1_3:-8093082 None:intergenic
AGGTAACAACAACTAACAAA+TGG 0.488804 1_3:+8089649 Msa0101450:exon
CATTTATGGAAGTCAGATCT+GGG 0.495680 1_3:+8091379 Msa0101450:intron
AAACGAGGATAGTAGGTGGA+TGG 0.496986 1_3:-8089794 None:intergenic
CTAGTGCTCATCAGAAATCA+AGG 0.499224 1_3:+8091845 Msa0101450:CDS
ATTTAGCGTAACAACAAGAT+CGG 0.503776 1_3:-8090390 None:intergenic
TTATAATGGTGGATCCGCCT+TGG 0.504708 1_3:+8091815 Msa0101450:CDS
TTTGCTAGAGAAATTATGGC+TGG 0.505964 1_3:+8093032 Msa0101450:CDS
ACGTATCCGTGACACTGATA+AGG 0.508783 1_3:+8090415 Msa0101450:CDS
ATAAGGCATAAACTATCATC+AGG 0.510527 1_3:-8093150 None:intergenic
AAAGCAAATGGGTCCTTGAT+TGG 0.513655 1_3:+8092573 Msa0101450:CDS
GAGTAAGTTGCTTAATAGGA+AGG 0.517447 1_3:-8092337 None:intergenic
CCGTGACACTGATAAGGACT+TGG 0.518122 1_3:+8090421 Msa0101450:CDS
AAAATTCAGAGATGACCATA+AGG 0.520180 1_3:-8093167 None:intergenic
TGTGTTTAGTGTAGGAATTG+AGG 0.526558 1_3:+8090216 Msa0101450:intron
TTTAGCGTAACAACAAGATC+GGG 0.528985 1_3:-8090389 None:intergenic
TATTACAGGAGTATATTCCT+GGG 0.534239 1_3:+8092982 Msa0101450:CDS
ATGTGATTATGAGCATTCCT+GGG 0.539415 1_3:+8092816 Msa0101450:CDS
CTTCTCCCACTAAACGCAAA+CGG 0.540533 1_3:+8089852 Msa0101450:CDS
TATGCAGCTCACACTGATTG+TGG 0.541945 1_3:+8091784 Msa0101450:intron
TGGTTTCAACCTTATAATGG+TGG 0.547761 1_3:+8091804 Msa0101450:CDS
TTACAAGGCCTAACCTTCCC+AGG 0.551312 1_3:-8092651 None:intergenic
TATTGCAGGTGAAAGCAAAT+GGG 0.556753 1_3:+8092562 Msa0101450:intron
ATTTGTTCTCTATCATTCAA+CGG 0.558103 1_3:-8089908 None:intergenic
GGAACGATTTAGAATGCGTA+CGG 0.561375 1_3:-8089750 None:intergenic
ACCAGCAGAGTTGTGAGCAG+TGG 0.564638 1_3:+8089622 Msa0101450:five_prime_UTR
CATCGGGGAGGCTTGACCCC+AGG 0.572898 1_3:-8092999 None:intergenic
ATTCCAACTATAGTTAATCC+GGG 0.573072 1_3:-8093228 None:intergenic
ATTCCAACTATAGTTAATCC+GGG 0.573072 1_3:-8093283 None:intergenic
TGGTTACCCATAATGCTACA+AGG 0.574789 1_3:-8092373 None:intergenic
TGGCTGGATGTGTTGCTTGG+GGG 0.577972 1_3:+8093048 Msa0101450:CDS
ACAACAATACCTGCAATTGG+AGG 0.578994 1_3:-8092854 None:intergenic
TAGCAAATAGCTCAACACAT+CGG 0.581809 1_3:-8093016 None:intergenic
AAGGTCTGGGGTTCGAACCT+CGG 0.583638 1_3:-8093639 None:intergenic
AGTGATGCCCTGCTTCTACT+GGG 0.585834 1_3:+8093500 Msa0101450:three_prime_UTR
ATGGCTGGATGTGTTGCTTG+GGG 0.587655 1_3:+8093047 Msa0101450:CDS
CAACTATAGTTAATCCGGGA+AGG 0.588536 1_3:-8093224 None:intergenic
CAACTATAGTTAATCCGGGA+AGG 0.588536 1_3:-8093279 None:intergenic
GGCATCCTGGAAAACTGCGT+TGG 0.594288 1_3:+8093578 Msa0101450:three_prime_UTR
CTCACAGTATTGCACATTTG+GGG 0.595476 1_3:-8091132 None:intergenic
ATCACATGATCATCCTTCAA+AGG 0.596842 1_3:-8092800 None:intergenic
AGTAAGTTGCTTAATAGGAA+GGG 0.601313 1_3:-8092336 None:intergenic
TTTGGGATACAGTCCTGGGA+AGG 0.602187 1_3:+8092638 Msa0101450:CDS
GCAGAGTTGTGAGCAGTGGA+GGG 0.603616 1_3:+8089626 Msa0101450:five_prime_UTR
ATGTAAAAGCAGCTCTCTCG+AGG 0.609778 1_3:-8091248 None:intergenic
CCAAGTCCTTATCAGTGTCA+CGG 0.613168 1_3:-8090421 None:intergenic
TCTCTACCTAAAGATTCAGA+TGG 0.613786 1_3:-8093329 None:intergenic
ATGTGCAATACTGTGAGCAA+AGG 0.621542 1_3:+8091138 Msa0101450:CDS
AGTGGGAGAAGAAGGAACGG+TGG 0.622455 1_3:-8089840 None:intergenic
GACACTGATAAGGACTTGGA+AGG 0.629938 1_3:+8090425 Msa0101450:CDS
GAGTTGTGAGCAGTGGAGGG+AGG 0.631235 1_3:+8089629 Msa0101450:five_prime_UTR
TTGAAAGAGAAGTGTGAGGG+TGG 0.631283 1_3:+8090332 Msa0101450:CDS
GAACGATTTAGAATGCGTAC+GGG 0.633014 1_3:-8089749 None:intergenic
TGGTGCAAATGAGTTTATGT+TGG 0.633945 1_3:-8089597 None:intergenic
TGCTTGAAAGAGAAGTGTGA+GGG 0.641507 1_3:+8090329 Msa0101450:CDS
ATTACAGGAGTATATTCCTG+GGG 0.642911 1_3:+8092983 Msa0101450:CDS
GGTTACCCATAATGCTACAA+GGG 0.647091 1_3:-8092372 None:intergenic
AAACTCTCCCAGTAGAAGCA+GGG 0.647276 1_3:-8093507 None:intergenic
TCATGTGCTTTCATCAACAA+AGG 0.649039 1_3:-8090239 None:intergenic
CTAGAATCTTGAAAGTGGAG+TGG 0.653474 1_3:-8093077 None:intergenic
TGTGATTATGAGCATTCCTG+GGG 0.653506 1_3:+8092817 Msa0101450:CDS
GTTAGGGATTTGAAGAAACG+AGG 0.658771 1_3:-8089809 None:intergenic
AAGCAACTTACTCACACCGA+AGG 0.671839 1_3:+8092347 Msa0101450:CDS
GAAGAAACGAGGATAGTAGG+TGG 0.675429 1_3:-8089798 None:intergenic
TTTAGTGGGAGAAGAAGGAA+CGG 0.689478 1_3:-8089843 None:intergenic
TTGCTTGAAAGAGAAGTGTG+AGG 0.696581 1_3:+8090328 Msa0101450:CDS
TGGATGGAGAAACAGTGAAG+CGG 0.708388 1_3:-8089778 None:intergenic
GCAAATAGCTCAACACATCG+GGG 0.710022 1_3:-8093014 None:intergenic
AATAGCTCAACACATCGGGG+AGG 0.733241 1_3:-8093011 None:intergenic
TGACACTGAAGATGACGCGG+TGG 0.770612 1_3:+8091196 Msa0101450:CDS
TAATGACACTGAAGATGACG+CGG 0.782238 1_3:+8091193 Msa0101450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATATTTTATTTTCATTTA+TGG + chr1_3:8091365-8091384 Msa0101450:intron 10.0%
!!! TTATTTTCAATTTTCAATTA+GGG + chr1_3:8093557-8093576 Msa0101450:three_prime_UTR 10.0%
!! AAAAAAAAAAAAAAACCTGA+TGG - chr1_3:8089946-8089965 None:intergenic 15.0%
!!! ATTATTTTTTAGGATTTGAT+TGG + chr1_3:8090506-8090525 Msa0101450:intron 15.0%
!! ATTGTTAAAACATGATAAAA+TGG - chr1_3:8090858-8090877 None:intergenic 15.0%
!! ATTTAGAAACTAAATCTATT+TGG - chr1_3:8091014-8091033 None:intergenic 15.0%
!!! TTTGAAATAAATCTAAGATA+TGG + chr1_3:8092257-8092276 Msa0101450:intron 15.0%
!!! TTTTTTTTTATTTCTTTCTG+TGG + chr1_3:8093451-8093470 Msa0101450:three_prime_UTR 15.0%
!!! TTTTTTTTATTTCTTTCTGT+GGG + chr1_3:8093452-8093471 Msa0101450:three_prime_UTR 15.0%
!!! CTTATTTTCAATTTTCAATT+AGG + chr1_3:8093556-8093575 Msa0101450:three_prime_UTR 15.0%
!! ATCAATAATAAGATCATTCT+GGG - chr1_3:8090468-8090487 None:intergenic 20.0%
!! TTGATTGGATATTTAATCAT+AGG + chr1_3:8090521-8090540 Msa0101450:intron 20.0%
!! TTTAAGAATTGTGTTCTATT+CGG - chr1_3:8090561-8090580 None:intergenic 20.0%
!! AATATCATGATGTAAAGAAT+TGG + chr1_3:8090698-8090717 Msa0101450:intron 20.0%
!!! TCTTGAGATTATTTTCAAAT+TGG + chr1_3:8090765-8090784 Msa0101450:intron 20.0%
!!! TTTGATGGAATATATTTTAG+TGG + chr1_3:8090824-8090843 Msa0101450:intron 20.0%
!!! TTGATGGAATATATTTTAGT+GGG + chr1_3:8090825-8090844 Msa0101450:intron 20.0%
!! ACAACAAAATTATTGAATAC+TGG - chr1_3:8091173-8091192 None:intergenic 20.0%
!!! AACTTTTAAGGAGAATTATT+CGG - chr1_3:8091611-8091630 None:intergenic 20.0%
!! AATCAAATAATGTTGATATG+TGG + chr1_3:8091670-8091689 Msa0101450:intron 20.0%
!!! AAATTGTTTTATACTACATC+AGG - chr1_3:8091898-8091917 None:intergenic 20.0%
!! TGATGTAGTATAAAACAATT+TGG + chr1_3:8091897-8091916 Msa0101450:intron 20.0%
!!! TTTGTATTTTCACTCTTTTT+TGG + chr1_3:8092068-8092087 Msa0101450:intron 20.0%
!!! TTGTATTTTCACTCTTTTTT+GGG + chr1_3:8092069-8092088 Msa0101450:intron 20.0%
!!! TAGATATTTTGTCAAAAAGA+TGG + chr1_3:8093097-8093116 Msa0101450:CDS 20.0%
!!! TGTTTCTATGTCTTATTTTT+TGG + chr1_3:8093609-8093628 Msa0101450:three_prime_UTR 20.0%
!!! GTTTCTATGTCTTATTTTTT+GGG + chr1_3:8093610-8093629 Msa0101450:three_prime_UTR 20.0%
! ATTTGTTCTCTATCATTCAA+CGG - chr1_3:8089911-8089930 None:intergenic 25.0%
! ATACAACAGAGTAAAATGTT+AGG - chr1_3:8089999-8090018 None:intergenic 25.0%
! ACTATTATTGTGTTTAGTGT+AGG + chr1_3:8090208-8090227 Msa0101450:intron 25.0%
!! TTGAAATCGAATGAACTTTT+GGG + chr1_3:8090269-8090288 Msa0101450:CDS 25.0%
! CATCAATAATAAGATCATTC+TGG - chr1_3:8090469-8090488 None:intergenic 25.0%
! GATATTTAATCATAGGTGAA+TGG + chr1_3:8090528-8090547 Msa0101450:intron 25.0%
! CATGATATTACTGCTTAAAA+AGG - chr1_3:8090687-8090706 None:intergenic 25.0%
!!! TGATGGAATATATTTTAGTG+GGG + chr1_3:8090826-8090845 Msa0101450:intron 25.0%
! AACACAGACAAATATCTAAA+CGG - chr1_3:8090987-8091006 None:intergenic 25.0%
! CTAAATTGTTAATACATTGC+TGG + chr1_3:8091028-8091047 Msa0101450:intron 25.0%
! AAAACAACCATGATAAATTC+TGG + chr1_3:8091279-8091298 Msa0101450:intron 25.0%
! AAACAACCATGATAAATTCT+GGG + chr1_3:8091280-8091299 Msa0101450:intron 25.0%
!! TGTTGTTTATTAAGCTATCA+TGG + chr1_3:8091331-8091350 Msa0101450:intron 25.0%
! AATCACCTTCATAAAAGAAT+TGG + chr1_3:8091535-8091554 Msa0101450:intron 25.0%
! CTCTTTAATCAGACAATATA+TGG - chr1_3:8091927-8091946 None:intergenic 25.0%
! AATAAAGATATAAGAGATGC+AGG - chr1_3:8091992-8092011 None:intergenic 25.0%
!!! TGTATTTTCACTCTTTTTTG+GGG + chr1_3:8092070-8092089 Msa0101450:intron 25.0%
! GTATTCAATGATACTGTAAA+TGG + chr1_3:8092162-8092181 Msa0101450:intron 25.0%
!! AAATCTAAGATATGGTGTAT+TGG + chr1_3:8092265-8092284 Msa0101450:intron 25.0%
!! CCTTGTAATGTTTTACTAAT+CGG + chr1_3:8092666-8092685 Msa0101450:intron 25.0%
!!! TCAAAGGCTTAAATTTTGAT+TGG - chr1_3:8092787-8092806 None:intergenic 25.0%
! ATCAAAATTTAAGCCTTTGA+AGG + chr1_3:8092787-8092806 Msa0101450:CDS 25.0%
! ACTAGTTATAATGAAGTAGT+CGG + chr1_3:8092913-8092932 Msa0101450:intron 25.0%
!! AATATCTAGAATCTTGAAAG+TGG - chr1_3:8093085-8093104 None:intergenic 25.0%
!!! TTTAACTTTTTTTTCCTTCC+CGG + chr1_3:8093210-8093229 Msa0101450:three_prime_UTR 25.0%
! AATTCCAACTATAGTTAATC+CGG - chr1_3:8093232-8093251 None:intergenic 25.0%
!! ACTATAGTTGGAATTTTGAA+TGG + chr1_3:8093237-8093256 Msa0101450:three_prime_UTR 25.0%
! AATTCCAACTATAGTTAATC+CGG - chr1_3:8093232-8093251 None:intergenic 25.0%
!! ACTATAGTTGGAATTTTGAA+TGG + chr1_3:8093237-8093256 Msa0101450:three_prime_UTR 25.0%
! ATTTGTCAAACTAGCAATTT+GGG - chr1_3:8093363-8093382 None:intergenic 25.0%
! AATTTGTCAAACTAGCAATT+TGG - chr1_3:8093364-8093383 None:intergenic 25.0%
!! AATTGCTAGTTTGACAAATT+AGG + chr1_3:8093364-8093383 Msa0101450:three_prime_UTR 25.0%
AGGTAACAACAACTAACAAA+TGG + chr1_3:8089649-8089668 Msa0101450:exon 30.0%
! ATTGGTATATACCTGATTTG+TGG - chr1_3:8089700-8089719 None:intergenic 30.0%
CTGTGTTTGAATTAGAGAAT+TGG - chr1_3:8089718-8089737 None:intergenic 30.0%
! GTTGAAATCGAATGAACTTT+TGG + chr1_3:8090268-8090287 Msa0101450:CDS 30.0%
ATTTAGCGTAACAACAAGAT+CGG - chr1_3:8090393-8090412 None:intergenic 30.0%
ATCATGATGTAAAGAATTGG+AGG + chr1_3:8090701-8090720 Msa0101450:intron 30.0%
ATGAGTAATTGATCATGCAT+TGG + chr1_3:8090795-8090814 Msa0101450:intron 30.0%
TTTATCATCTATATGAACGC+AGG + chr1_3:8090929-8090948 Msa0101450:intron 30.0%
AGTTATGTATGAACCATTAC+CGG - chr1_3:8091425-8091444 None:intergenic 30.0%
! TTATTTCTTGTTATATGCCG+TGG + chr1_3:8091451-8091470 Msa0101450:intron 30.0%
TTGTGGTTTCAACCTTATAA+TGG + chr1_3:8091801-8091820 Msa0101450:CDS 30.0%
GACGAATAAGATTTGTACTA+TGG + chr1_3:8091869-8091888 Msa0101450:intron 30.0%
!!! GTATTTTCACTCTTTTTTGG+GGG + chr1_3:8092071-8092090 Msa0101450:intron 30.0%
!!! TATTTTCACTCTTTTTTGGG+GGG + chr1_3:8092072-8092091 Msa0101450:intron 30.0%
TTACTCAGTTTAAACTGGTT+GGG + chr1_3:8092222-8092241 Msa0101450:intron 30.0%
!! AGGGATAAAAAGTACCTATT+GGG - chr1_3:8092320-8092339 None:intergenic 30.0%
!! AAGGGATAAAAAGTACCTAT+TGG - chr1_3:8092321-8092340 None:intergenic 30.0%
AGTAAGTTGCTTAATAGGAA+GGG - chr1_3:8092339-8092358 None:intergenic 30.0%
AATGACATCAAACACTTGTA+TGG - chr1_3:8092513-8092532 None:intergenic 30.0%
ATTTAGATCTCTTCCATCAT+AGG + chr1_3:8092598-8092617 Msa0101450:CDS 30.0%
! CCATATGAAAGCCTAATTTT+GGG + chr1_3:8092621-8092640 Msa0101450:CDS 30.0%
CCGATTAGTAAAACATTACA+AGG - chr1_3:8092669-8092688 None:intergenic 30.0%
TTTCTTATATCTCTCACTTG+TGG + chr1_3:8092727-8092746 Msa0101450:intron 30.0%
! TTATTACAGGAGTATATTCC+TGG + chr1_3:8092981-8093000 Msa0101450:CDS 30.0%
! TATTACAGGAGTATATTCCT+GGG + chr1_3:8092982-8093001 Msa0101450:CDS 30.0%
! GCTATTTGCTAGAGAAATTA+TGG + chr1_3:8093028-8093047 Msa0101450:CDS 30.0%
! GGCTAGCTAATTCTTTAAAA+AGG + chr1_3:8093118-8093137 Msa0101450:exon 30.0%
ATAAGGCATAAACTATCATC+AGG - chr1_3:8093153-8093172 None:intergenic 30.0%
TGATGATAGTTTATGCCTTA+TGG + chr1_3:8093152-8093171 Msa0101450:three_prime_UTR 30.0%
AAAATTCAGAGATGACCATA+AGG - chr1_3:8093170-8093189 None:intergenic 30.0%
ATTCCAACTATAGTTAATCC+GGG - chr1_3:8093231-8093250 None:intergenic 30.0%
ATTCCAACTATAGTTAATCC+GGG - chr1_3:8093231-8093250 None:intergenic 30.0%
!!! TCTATGTCTTATTTTTTGGG+TGG + chr1_3:8093613-8093632 Msa0101450:three_prime_UTR 30.0%
TGGTGCAAATGAGTTTATGT+TGG - chr1_3:8089600-8089619 None:intergenic 35.0%
CTATCGTTATTCCACAAATC+AGG + chr1_3:8089686-8089705 Msa0101450:CDS 35.0%
TTTGAAGAAACGAGGATAGT+AGG - chr1_3:8089804-8089823 None:intergenic 35.0%
! TTTTTCCGTTTGCGTTTAGT+GGG - chr1_3:8089860-8089879 None:intergenic 35.0%
!!! TTTTTTCCGTTTGCGTTTAG+TGG - chr1_3:8089861-8089880 None:intergenic 35.0%
TAATGGTATTGTGTCTGTGT+CGG - chr1_3:8090038-8090057 None:intergenic 35.0%
TGTGTTTAGTGTAGGAATTG+AGG + chr1_3:8090216-8090235 Msa0101450:intron 35.0%
TCATGTGCTTTCATCAACAA+AGG - chr1_3:8090242-8090261 None:intergenic 35.0%
!! TGAACACTGTTTTGTTGAAC+TGG + chr1_3:8090355-8090374 Msa0101450:CDS 35.0%
!! GAACACTGTTTTGTTGAACT+GGG + chr1_3:8090356-8090375 Msa0101450:CDS 35.0%
TTTAGCGTAACAACAAGATC+GGG - chr1_3:8090392-8090411 None:intergenic 35.0%
! ATGCATTGGATGCTATTTGA+TGG + chr1_3:8090809-8090828 Msa0101450:intron 35.0%
ACACATCCCAGAATTTATCA+TGG - chr1_3:8091289-8091308 None:intergenic 35.0%
TCATTTATGGAAGTCAGATC+TGG + chr1_3:8091378-8091397 Msa0101450:intron 35.0%
CATTTATGGAAGTCAGATCT+GGG + chr1_3:8091379-8091398 Msa0101450:intron 35.0%
GTTATGTATGAACCATTACC+GGG - chr1_3:8091424-8091443 None:intergenic 35.0%
ACAGATATGATGAAGAACCA+CGG - chr1_3:8091471-8091490 None:intergenic 35.0%
! GGATGCCAATTCTTTTATGA+AGG - chr1_3:8091543-8091562 None:intergenic 35.0%
! CACATGTCATGCAACTTTTA+AGG - chr1_3:8091623-8091642 None:intergenic 35.0%
AAGTTGCATGACATGTGAAT+TGG + chr1_3:8091626-8091645 Msa0101450:intron 35.0%
AGTTGCATGACATGTGAATT+GGG + chr1_3:8091627-8091646 Msa0101450:intron 35.0%
! AGAACTTGTTTGTGTTTAGC+TGG + chr1_3:8091710-8091729 Msa0101450:intron 35.0%
TGGTTTCAACCTTATAATGG+TGG + chr1_3:8091804-8091823 Msa0101450:CDS 35.0%
TCAATAAGTTTGCGAGAGAA+AGG - chr1_3:8092026-8092045 None:intergenic 35.0%
GCTCATAGCATGAAAATGAA+CGG + chr1_3:8092105-8092124 Msa0101450:intron 35.0%
AGCTGTTACTCAGTTTAAAC+TGG + chr1_3:8092217-8092236 Msa0101450:intron 35.0%
GTTACTCAGTTTAAACTGGT+TGG + chr1_3:8092221-8092240 Msa0101450:intron 35.0%
AGTTTAAACTGGTTGGGAAA+TGG + chr1_3:8092228-8092247 Msa0101450:intron 35.0%
GTTTAAACTGGTTGGGAAAT+GGG + chr1_3:8092229-8092248 Msa0101450:intron 35.0%
TTTAAACTGGTTGGGAAATG+GGG + chr1_3:8092230-8092249 Msa0101450:intron 35.0%
TATTGGTGTGTCATCTATGT+AGG + chr1_3:8092282-8092301 Msa0101450:intron 35.0%
!! TAAAAAGTACCTATTGGGCA+AGG - chr1_3:8092315-8092334 None:intergenic 35.0%
GAGTAAGTTGCTTAATAGGA+AGG - chr1_3:8092340-8092359 None:intergenic 35.0%
GTGTGAGTAAGTTGCTTAAT+AGG - chr1_3:8092344-8092363 None:intergenic 35.0%
!! TGCAAGTTTTCATTGGTTGA+AGG + chr1_3:8092460-8092479 Msa0101450:CDS 35.0%
!! AAGTTTTCATTGGTTGAAGG+TGG + chr1_3:8092463-8092482 Msa0101450:intron 35.0%
CACTTGTATGGAAAGCAAAT+GGG - chr1_3:8092501-8092520 None:intergenic 35.0%
ACACTTGTATGGAAAGCAAA+TGG - chr1_3:8092502-8092521 None:intergenic 35.0%
AGACAACAAGTACAAGAGAT+TGG - chr1_3:8092543-8092562 None:intergenic 35.0%
!! TTGTACTTGTTGTCTATTGC+AGG + chr1_3:8092548-8092567 Msa0101450:intron 35.0%
TATTGCAGGTGAAAGCAAAT+GGG + chr1_3:8092562-8092581 Msa0101450:intron 35.0%
GAGATCTAAATCACCAATCA+AGG - chr1_3:8092589-8092608 None:intergenic 35.0%
! GCCATATGAAAGCCTAATTT+TGG + chr1_3:8092620-8092639 Msa0101450:CDS 35.0%
CCCAAAATTAGGCTTTCATA+TGG - chr1_3:8092624-8092643 None:intergenic 35.0%
!!! TAATTTTGGGATACAGTCCT+GGG + chr1_3:8092634-8092653 Msa0101450:CDS 35.0%
! TGTGGTGTATGGTATTTTCT+AGG + chr1_3:8092745-8092764 Msa0101450:intron 35.0%
ATCACATGATCATCCTTCAA+AGG - chr1_3:8092803-8092822 None:intergenic 35.0%
ATGTGATTATGAGCATTCCT+GGG + chr1_3:8092816-8092835 Msa0101450:CDS 35.0%
! ATTACAGGAGTATATTCCTG+GGG + chr1_3:8092983-8093002 Msa0101450:CDS 35.0%
TAGCAAATAGCTCAACACAT+CGG - chr1_3:8093019-8093038 None:intergenic 35.0%
TTTGCTAGAGAAATTATGGC+TGG + chr1_3:8093032-8093051 Msa0101450:CDS 35.0%
! TTTTGAATGGTTAGTGCAGT+TGG + chr1_3:8093250-8093269 Msa0101450:three_prime_UTR 35.0%
! TTTTGAATGGTTAGTGCAGT+CGG + chr1_3:8093250-8093269 Msa0101450:three_prime_UTR 35.0%
TCTCTACCTAAAGATTCAGA+TGG - chr1_3:8093332-8093351 None:intergenic 35.0%
CTGAATCTTTAGGTAGAGAT+TGG + chr1_3:8093333-8093352 Msa0101450:three_prime_UTR 35.0%
!! AATTTTCAATTAGGGCATCC+TGG + chr1_3:8093565-8093584 Msa0101450:three_prime_UTR 35.0%
! GAACGATTTAGAATGCGTAC+GGG - chr1_3:8089752-8089771 None:intergenic 40.0%
! GGAACGATTTAGAATGCGTA+CGG - chr1_3:8089753-8089772 None:intergenic 40.0%
GTTAGGGATTTGAAGAAACG+AGG - chr1_3:8089812-8089831 None:intergenic 40.0%
TTTAGTGGGAGAAGAAGGAA+CGG - chr1_3:8089846-8089865 None:intergenic 40.0%
GCAAACGGAAAAAACGAAAG+CGG + chr1_3:8089867-8089886 Msa0101450:CDS 40.0%
GAAAAAACGAAAGCGGAGTT+CGG + chr1_3:8089874-8089893 Msa0101450:CDS 40.0%
! TTGCTTGAAAGAGAAGTGTG+AGG + chr1_3:8090328-8090347 Msa0101450:CDS 40.0%
! TGCTTGAAAGAGAAGTGTGA+GGG + chr1_3:8090329-8090348 Msa0101450:CDS 40.0%
AGGCTAAGACTTGCAATCAA+GGG + chr1_3:8090949-8090968 Msa0101450:intron 40.0%
CTTAGATTGTGTGTAGTTGC+TGG + chr1_3:8091062-8091081 Msa0101450:intron 40.0%
CTCACAGTATTGCACATTTG+GGG - chr1_3:8091135-8091154 None:intergenic 40.0%
GCTCACAGTATTGCACATTT+GGG - chr1_3:8091136-8091155 None:intergenic 40.0%
TGCTCACAGTATTGCACATT+TGG - chr1_3:8091137-8091156 None:intergenic 40.0%
ATGTGCAATACTGTGAGCAA+AGG + chr1_3:8091138-8091157 Msa0101450:CDS 40.0%
TAATGACACTGAAGATGACG+CGG + chr1_3:8091193-8091212 Msa0101450:CDS 40.0%
GTGGTTCTTCATCATATCTG+TGG + chr1_3:8091470-8091489 Msa0101450:intron 40.0%
GTTGCATGACATGTGAATTG+GGG + chr1_3:8091628-8091647 Msa0101450:intron 40.0%
ATTGGGGTTGTCTTGAATGT+TGG + chr1_3:8091644-8091663 Msa0101450:intron 40.0%
TGTGTTTAGCTGGTCAAGTA+TGG + chr1_3:8091720-8091739 Msa0101450:intron 40.0%
GTGTTTAGCTGGTCAAGTAT+GGG + chr1_3:8091721-8091740 Msa0101450:intron 40.0%
TGTTTAGCTGGTCAAGTATG+GGG + chr1_3:8091722-8091741 Msa0101450:intron 40.0%
CTAGTGCTCATCAGAAATCA+AGG + chr1_3:8091845-8091864 Msa0101450:CDS 40.0%
TCTCTCGCAAACTTATTGAG+AGG + chr1_3:8092027-8092046 Msa0101450:intron 40.0%
GGTTACCCATAATGCTACAA+GGG - chr1_3:8092375-8092394 None:intergenic 40.0%
TGGTTACCCATAATGCTACA+AGG - chr1_3:8092376-8092395 None:intergenic 40.0%
ACTACGTAGCTTCTCTCTAT+TGG - chr1_3:8092396-8092415 None:intergenic 40.0%
! GCTATGCTGCAAGTTTTCAT+TGG + chr1_3:8092453-8092472 Msa0101450:CDS 40.0%
CTATTGCAGGTGAAAGCAAA+TGG + chr1_3:8092561-8092580 Msa0101450:intron 40.0%
AAAGCAAATGGGTCCTTGAT+TGG + chr1_3:8092573-8092592 Msa0101450:CDS 40.0%
CAGGACTGTATCCCAAAATT+AGG - chr1_3:8092635-8092654 None:intergenic 40.0%
!!! CTAATTTTGGGATACAGTCC+TGG + chr1_3:8092633-8092652 Msa0101450:CDS 40.0%
GCCTTCTAAGTTCCAACTAT+CGG + chr1_3:8092688-8092707 Msa0101450:intron 40.0%
ACCGATAGTTGGAACTTAGA+AGG - chr1_3:8092692-8092711 None:intergenic 40.0%
GTGAGAGAAAAACCGATAGT+TGG - chr1_3:8092703-8092722 None:intergenic 40.0%
TATCTCTCACTTGTGGTGTA+TGG + chr1_3:8092734-8092753 Msa0101450:intron 40.0%
CATGTGATTATGAGCATTCC+TGG + chr1_3:8092815-8092834 Msa0101450:CDS 40.0%
TGTGATTATGAGCATTCCTG+GGG + chr1_3:8092817-8092836 Msa0101450:CDS 40.0%
TCAAGAAAACCTCCAATTGC+AGG + chr1_3:8092845-8092864 Msa0101450:CDS 40.0%
ACAACAATACCTGCAATTGG+AGG - chr1_3:8092857-8092876 None:intergenic 40.0%
CAGACAACAATACCTGCAAT+TGG - chr1_3:8092860-8092879 None:intergenic 40.0%
! CAATTGCAGGTATTGTTGTC+TGG + chr1_3:8092858-8092877 Msa0101450:intron 40.0%
GGTGTGGTCAGATTTATTAC+AGG + chr1_3:8092968-8092987 Msa0101450:intron 40.0%
AGCAAATAGCTCAACACATC+GGG - chr1_3:8093018-8093037 None:intergenic 40.0%
CTAGAATCTTGAAAGTGGAG+TGG - chr1_3:8093080-8093099 None:intergenic 40.0%
CAACTATAGTTAATCCGGGA+AGG - chr1_3:8093227-8093246 None:intergenic 40.0%
CTTCCCGGATTAACTATAGT+TGG + chr1_3:8093225-8093244 Msa0101450:three_prime_UTR 40.0%
CAACTATAGTTAATCCGGGA+AGG - chr1_3:8093227-8093246 None:intergenic 40.0%
CTTCCCGGATTAACTATAGT+TGG + chr1_3:8093225-8093244 Msa0101450:three_prime_UTR 40.0%
AGAAACAGTGAAGCGGTTGT+AGG - chr1_3:8089774-8089793 None:intergenic 45.0%
TGGATGGAGAAACAGTGAAG+CGG - chr1_3:8089781-8089800 None:intergenic 45.0%
AAACGAGGATAGTAGGTGGA+TGG - chr1_3:8089797-8089816 None:intergenic 45.0%
GAAGAAACGAGGATAGTAGG+TGG - chr1_3:8089801-8089820 None:intergenic 45.0%
!! AAGAAGGAACGGTGGTTTTG+GGG - chr1_3:8089835-8089854 None:intergenic 45.0%
! GAAGAAGGAACGGTGGTTTT+GGG - chr1_3:8089836-8089855 None:intergenic 45.0%
! AGAAGAAGGAACGGTGGTTT+TGG - chr1_3:8089837-8089856 None:intergenic 45.0%
TTGCGTTTAGTGGGAGAAGA+AGG - chr1_3:8089851-8089870 None:intergenic 45.0%
CTTCTCCCACTAAACGCAAA+CGG + chr1_3:8089852-8089871 Msa0101450:CDS 45.0%
AATTGCACTTCAACGCCATC+AGG + chr1_3:8089928-8089947 Msa0101450:CDS 45.0%
CACATGTGCAAGTGTCTTGT+AGG + chr1_3:8090116-8090135 Msa0101450:intron 45.0%
! TTGAAAGAGAAGTGTGAGGG+TGG + chr1_3:8090332-8090351 Msa0101450:CDS 45.0%
ACGTATCCGTGACACTGATA+AGG + chr1_3:8090415-8090434 Msa0101450:CDS 45.0%
CCAAGTCCTTATCAGTGTCA+CGG - chr1_3:8090424-8090443 None:intergenic 45.0%
GACACTGATAAGGACTTGGA+AGG + chr1_3:8090425-8090444 Msa0101450:CDS 45.0%
CAGGCTAAGACTTGCAATCA+AGG + chr1_3:8090948-8090967 Msa0101450:intron 45.0%
TTGTGTGTAGTTGCTGGTGT+AGG + chr1_3:8091068-8091087 Msa0101450:intron 45.0%
ATGTAAAAGCAGCTCTCTCG+AGG - chr1_3:8091251-8091270 None:intergenic 45.0%
!!! TCGAGAGAGCTGCTTTTACA+TGG + chr1_3:8091250-8091269 Msa0101450:CDS 45.0%
CAGATTCGCAATCTCATTCC+CGG + chr1_3:8091403-8091422 Msa0101450:CDS 45.0%
! TATGCAGCTCACACTGATTG+TGG + chr1_3:8091784-8091803 Msa0101450:intron 45.0%
AAGGCGGATCCACCATTATA+AGG - chr1_3:8091816-8091835 None:intergenic 45.0%
!! TTATAATGGTGGATCCGCCT+TGG + chr1_3:8091815-8091834 Msa0101450:CDS 45.0%
!! TATAATGGTGGATCCGCCTT+GGG + chr1_3:8091816-8091835 Msa0101450:CDS 45.0%
! TGAGCACTAGCATTTTCCCA+AGG - chr1_3:8091835-8091854 None:intergenic 45.0%
!!! TTTCACTCTTTTTTGGGGGG+TGG + chr1_3:8092075-8092094 Msa0101450:intron 45.0%
GGTATTCAACCTTGCCCAAT+AGG + chr1_3:8092303-8092322 Msa0101450:intron 45.0%
AAGCAACTTACTCACACCGA+AGG + chr1_3:8092347-8092366 Msa0101450:CDS 45.0%
!! TAATGCTACAAGGGCACCTT+CGG - chr1_3:8092366-8092385 None:intergenic 45.0%
! AAGGTGCCCTTGTAGCATTA+TGG + chr1_3:8092366-8092385 Msa0101450:CDS 45.0%
AGGTGCCCTTGTAGCATTAT+GGG + chr1_3:8092367-8092386 Msa0101450:CDS 45.0%
! AGAAAGAGCTTTTTGCAGCG+TGG + chr1_3:8092423-8092442 Msa0101450:CDS 45.0%
! GAAAGAGCTTTTTGCAGCGT+GGG + chr1_3:8092424-8092443 Msa0101450:CDS 45.0%
! AAAGAGCTTTTTGCAGCGTG+GGG + chr1_3:8092425-8092444 Msa0101450:CDS 45.0%
GGCTTTCATATGGCCTATGA+TGG - chr1_3:8092614-8092633 None:intergenic 45.0%
! GGTTTTCTTGAGTAATCCCC+AGG - chr1_3:8092836-8092855 None:intergenic 45.0%
ACGCTGAAGTTTCTTCGTAC+TGG + chr1_3:8092947-8092966 Msa0101450:intron 45.0%
! GAAGTTTCTTCGTACTGGTG+TGG + chr1_3:8092952-8092971 Msa0101450:intron 45.0%
GCAAATAGCTCAACACATCG+GGG - chr1_3:8093017-8093036 None:intergenic 45.0%
! TTATGGCTGGATGTGTTGCT+TGG + chr1_3:8093045-8093064 Msa0101450:CDS 45.0%
!! TATGGCTGGATGTGTTGCTT+GGG + chr1_3:8093046-8093065 Msa0101450:CDS 45.0%
! GCAGTTGGAATTTTCCTTCC+CGG + chr1_3:8093265-8093284 Msa0101450:three_prime_UTR 45.0%
GTCGGTCCATCTGAATCTTT+AGG + chr1_3:8093323-8093342 Msa0101450:three_prime_UTR 45.0%
AAACTCTCCCAGTAGAAGCA+GGG - chr1_3:8093510-8093529 None:intergenic 45.0%
TAAACTCTCCCAGTAGAAGC+AGG - chr1_3:8093511-8093530 None:intergenic 45.0%
! TCATACCAACGCAGTTTTCC+AGG - chr1_3:8093586-8093605 None:intergenic 45.0%
!!! TATTTTTTGGGTGGTGACCG+AGG + chr1_3:8093622-8093641 Msa0101450:three_prime_UTR 45.0%
!!! AATTTAGTATATTATTTTTT+AGG + chr1_3:8090496-8090515 Msa0101450:intron 5.0%
!! AATATTATTAATAAGTAAAA+AGG - chr1_3:8091564-8091583 None:intergenic 5.0%
!!! AACGGTGGTTTTGGGGGTTA+GGG - chr1_3:8089828-8089847 None:intergenic 50.0%
!!! AGAAGGAACGGTGGTTTTGG+GGG - chr1_3:8089834-8089853 None:intergenic 50.0%
!! CCACGTGTCAGCATTGGTAA+TGG - chr1_3:8090055-8090074 None:intergenic 50.0%
CCATTACCAATGCTGACACG+TGG + chr1_3:8090052-8090071 Msa0101450:intron 50.0%
AAGTGTCCACGTGTCAGCAT+TGG - chr1_3:8090061-8090080 None:intergenic 50.0%
CCGTGACACTGATAAGGACT+TGG + chr1_3:8090421-8090440 Msa0101450:CDS 50.0%
CGCAATCTCATTCCCGGTAA+TGG + chr1_3:8091409-8091428 Msa0101450:intron 50.0%
! GCACTAGCATTTTCCCAAGG+CGG - chr1_3:8091832-8091851 None:intergenic 50.0%
!!! ACTCTTTTTTGGGGGGTGGA+GGG + chr1_3:8092079-8092098 Msa0101450:intron 50.0%
! AAGAGCTTTTTGCAGCGTGG+GGG + chr1_3:8092426-8092445 Msa0101450:CDS 50.0%
! TTTGGGATACAGTCCTGGGA+AGG + chr1_3:8092638-8092657 Msa0101450:CDS 50.0%
GATACAGTCCTGGGAAGGTT+AGG + chr1_3:8092643-8092662 Msa0101450:intron 50.0%
TTACAAGGCCTAACCTTCCC+AGG - chr1_3:8092654-8092673 None:intergenic 50.0%
AATAGCTCAACACATCGGGG+AGG - chr1_3:8093014-8093033 None:intergenic 50.0%
!! ATGGCTGGATGTGTTGCTTG+GGG + chr1_3:8093047-8093066 Msa0101450:CDS 50.0%
AAGTGATGCCCTGCTTCTAC+TGG + chr1_3:8093499-8093518 Msa0101450:three_prime_UTR 50.0%
AGTGATGCCCTGCTTCTACT+GGG + chr1_3:8093500-8093519 Msa0101450:three_prime_UTR 50.0%
ACCAGCAGAGTTGTGAGCAG+TGG + chr1_3:8089622-8089641 Msa0101450:five_prime_UTR 55.0%
TCCACTGCTCACAACTCTGC+TGG - chr1_3:8089626-8089645 None:intergenic 55.0%
AGCAGAGTTGTGAGCAGTGG+AGG + chr1_3:8089625-8089644 Msa0101450:five_prime_UTR 55.0%
GCAGAGTTGTGAGCAGTGGA+GGG + chr1_3:8089626-8089645 Msa0101450:five_prime_UTR 55.0%
!!! GAACGGTGGTTTTGGGGGTT+AGG - chr1_3:8089829-8089848 None:intergenic 55.0%
AGTGGGAGAAGAAGGAACGG+TGG - chr1_3:8089843-8089862 None:intergenic 55.0%
TGACACTGAAGATGACGCGG+TGG + chr1_3:8091196-8091215 Msa0101450:CDS 55.0%
!!! CACTCTTTTTTGGGGGGTGG+AGG + chr1_3:8092078-8092097 Msa0101450:intron 55.0%
!!! CTCTTTTTTGGGGGGTGGAG+GGG + chr1_3:8092080-8092099 Msa0101450:intron 55.0%
! AGAGCTTTTTGCAGCGTGGG+GGG + chr1_3:8092427-8092446 Msa0101450:CDS 55.0%
!! TGGCTGGATGTGTTGCTTGG+GGG + chr1_3:8093048-8093067 Msa0101450:CDS 55.0%
GGCATCCTGGAAAACTGCGT+TGG + chr1_3:8093578-8093597 Msa0101450:three_prime_UTR 55.0%
GCTCACAACTCTGCTGGTGC+TGG - chr1_3:8089620-8089639 None:intergenic 60.0%
GAGTTGTGAGCAGTGGAGGG+AGG + chr1_3:8089629-8089648 Msa0101450:five_prime_UTR 60.0%
CATCGGGGAGGCTTGACCCC+AGG - chr1_3:8093002-8093021 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8089585 8093651 8089585 ID=Msa0101450;Name=Msa0101450
chr1_3 mRNA 8089585 8093651 8089585 ID=Msa0101450-mRNA-1;Parent=Msa0101450;Name=Msa0101450-mRNA-1;_AED=0.06;_eAED=0.06;_QI=83|1|1|1|1|1|9|524|422
chr1_3 exon 8089585 8089949 8089585 ID=Msa0101450-mRNA-1:exon:3209;Parent=Msa0101450-mRNA-1
chr1_3 exon 8090230 8090446 8090230 ID=Msa0101450-mRNA-1:exon:3210;Parent=Msa0101450-mRNA-1
chr1_3 exon 8091129 8091271 8091129 ID=Msa0101450-mRNA-1:exon:3211;Parent=Msa0101450-mRNA-1
chr1_3 exon 8091391 8091424 8091391 ID=Msa0101450-mRNA-1:exon:3212;Parent=Msa0101450-mRNA-1
chr1_3 exon 8091791 8091866 8091791 ID=Msa0101450-mRNA-1:exon:3213;Parent=Msa0101450-mRNA-1
chr1_3 exon 8092304 8092481 8092304 ID=Msa0101450-mRNA-1:exon:3214;Parent=Msa0101450-mRNA-1
chr1_3 exon 8092570 8092659 8092570 ID=Msa0101450-mRNA-1:exon:3215;Parent=Msa0101450-mRNA-1
chr1_3 exon 8092767 8092866 8092767 ID=Msa0101450-mRNA-1:exon:3216;Parent=Msa0101450-mRNA-1
chr1_3 exon 8092979 8093651 8092979 ID=Msa0101450-mRNA-1:exon:3217;Parent=Msa0101450-mRNA-1
chr1_3 five_prime_UTR 8089585 8089667 8089585 ID=Msa0101450-mRNA-1:five_prime_utr;Parent=Msa0101450-mRNA-1
chr1_3 CDS 8089668 8089949 8089668 ID=Msa0101450-mRNA-1:cds;Parent=Msa0101450-mRNA-1
chr1_3 CDS 8090230 8090446 8090230 ID=Msa0101450-mRNA-1:cds;Parent=Msa0101450-mRNA-1
chr1_3 CDS 8091129 8091271 8091129 ID=Msa0101450-mRNA-1:cds;Parent=Msa0101450-mRNA-1
chr1_3 CDS 8091391 8091424 8091391 ID=Msa0101450-mRNA-1:cds;Parent=Msa0101450-mRNA-1
chr1_3 CDS 8091791 8091866 8091791 ID=Msa0101450-mRNA-1:cds;Parent=Msa0101450-mRNA-1
chr1_3 CDS 8092304 8092481 8092304 ID=Msa0101450-mRNA-1:cds;Parent=Msa0101450-mRNA-1
chr1_3 CDS 8092570 8092659 8092570 ID=Msa0101450-mRNA-1:cds;Parent=Msa0101450-mRNA-1
chr1_3 CDS 8092767 8092866 8092767 ID=Msa0101450-mRNA-1:cds;Parent=Msa0101450-mRNA-1
chr1_3 CDS 8092979 8093127 8092979 ID=Msa0101450-mRNA-1:cds;Parent=Msa0101450-mRNA-1
chr1_3 three_prime_UTR 8093128 8093651 8093128 ID=Msa0101450-mRNA-1:three_prime_utr;Parent=Msa0101450-mRNA-1
Gene Sequence

>Msa0101450

ATGGAAGACTCACAGAAGCTATCGTTATTCCACAAATCAGGTATATACCAATTCTCTAATTCAAACACAGTTTTCATCGATCCCGTACGCATTCTAAATCGTTCCTACAACCGCTTCACTGTTTCTCCATCCACCTACTATCCTCGTTTCTTCAAATCCCTAACCCCCAAAACCACCGTTCCTTCTTCTCCCACTAAACGCAAACGGAAAAAACGAAAGCGGAGTTCGGAAGAATCTCGACCGTTGAATGATAGAGAACAAATTGCACTTCAACGCCATCAGGAATTGAGGCCTTTGTTGATGAAAGCACATGAGTGTTTGTTGAAATCGAATGAACTTTTGGGTGCTCTGAAAGATTTGAGAAGTGAAAGTGATTCTTGTTGCTTGAAAGAGAAGTGTGAGGGTGGTGAACACTGTTTTGTTGAACTGGGACAGCAAGTGCCCGATCTTGTTGTTACGCTAAATTTACGTATCCGTGACACTGATAAGGACTTGGAAGATTCCCCAAATGTGCAATACTGTGAGCAAAGGTCGATACTACCAGTATTCAATAATTTTGTTGTTAATGACACTGAAGATGACGCGGTGGCTGAGATTTTGAACAATCATTATATAATGCCTCGAGAGAGCTGCTTTTACATGTCAGATCTGGGACAGATTCGCAATCTCATTCCCGCTCACACTGATTGTGGTTTCAACCTTATAATGGTGGATCCGCCTTGGGAAAATGCTAGTGCTCATCAGAAATCAAGGTATTCAACCTTGCCCAATAGGTACTTTTTATCCCTTCCTATTAAGCAACTTACTCACACCGAAGGTGCCCTTGTAGCATTATGGGTAACCAATAGAGAGAAGCTACGTAGTTTTGTCGAGAAAGAGCTTTTTGCAGCGTGGGGGGTCAGCTATGCTGCAAGTTTTCATTGGTTGAAGGTGAAAGCAAATGGGTCCTTGATTGGTGATTTAGATCTCTTCCATCATAGGCCATATGAAAGCCTAATTTTGGGATACAGTCCTGGGAAGGTAAAAAATTCTGATAACCAATCAAAATTTAAGCCTTTGAAGGATGATCATGTGATTATGAGCATTCCTGGGGATTACTCAAGAAAACCTCCAATTGCAGATTTATTACAGGAGTATATTCCTGGGGTCAAGCCTCCCCGATGTGTTGAGCTATTTGCTAGAGAAATTATGGCTGGATGTGTTGCTTGGGGGAATGAACCACTCCACTTTCAAGATTCTAGATATTTTGTCAAAAAGATGGCTAGCTAA
Protein sequence

>Msa0101450

MEDSQKLSLFHKSGIYQFSNSNTVFIDPVRILNRSYNRFTVSPSTYYPRFFKSLTPKTTVPSSPTKRKRKKRKRSSEESRPLNDREQIALQRHQELRPLLMKAHECLLKSNELLGALKDLRSESDSCCLKEKCEGGEHCFVELGQQVPDLVVTLNLRIRDTDKDLEDSPNVQYCEQRSILPVFNNFVVNDTEDDAVAEILNNHYIMPRESCFYMSDLGQIRNLIPAHTDCGFNLIMVDPPWENASAHQKSRYSTLPNRYFLSLPIKQLTHTEGALVALWVTNREKLRSFVEKELFAAWGVSYAASFHWLKVKANGSLIGDLDLFHHRPYESLILGYSPGKVKNSDNQSKFKPLKDDHVIMSIPGDYSRKPPIADLLQEYIPGVKPPRCVELFAREIMAGCVAWGNEPLHFQDSRYFVKKMAS*