AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0925180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0925180 MtrunA17_Chr6g0471231 99.286 140 1 0 1 140 1 140 5.48e-104 293
Msa0925180 MtrunA17_Chr2g0325601 39.597 149 69 8 4 140 3 142 4.14e-25 93.2
Msa0925180 MtrunA17_Chr3g0124411 38.235 136 69 4 5 140 32 152 1.83e-22 86.7
Msa0925180 MtrunA17_Chr3g0145621 35.664 143 71 6 5 140 28 156 3.74e-22 86.3
Msa0925180 MtrunA17_Chr1g0160201 36.029 136 72 5 5 140 27 147 5.90e-22 85.5
Msa0925180 MtrunA17_Chr3g0115421 37.405 131 67 4 11 140 33 149 6.83e-22 85.1
Msa0925180 MtrunA17_Chr5g0405811 38.028 142 71 6 3 140 29 157 8.78e-22 85.1
Msa0925180 MtrunA17_Chr4g0036931 37.589 141 73 4 3 140 28 156 2.49e-21 84.0
Msa0925180 MtrunA17_Chr8g0382721 36.957 138 70 5 5 140 31 153 6.16e-21 82.8
Msa0925180 MtrunA17_Chr5g0407821 34.058 138 72 6 5 140 25 145 5.29e-20 80.1
Msa0925180 MtrunA17_Chr1g0189221 42.391 92 43 3 5 96 55 136 7.33e-18 75.5
Msa0925180 MtrunA17_Chr6g0448861 35.461 141 69 7 5 140 32 155 3.09e-17 73.2
Msa0925180 MtrunA17_Chr7g0251491 31.655 139 74 7 5 140 50 170 5.58e-16 70.5
Msa0925180 MtrunA17_Chr6g0460361 39.474 114 59 7 30 140 4 110 1.49e-13 62.8
Msa0925180 MtrunA17_Chr5g0422891 29.412 136 81 5 5 140 27 147 7.19e-13 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0925180 AT3G48970.1 75.714 140 34 0 1 140 1 140 3.95e-66 197
Msa0925180 AT3G48970.2 76.471 136 32 0 5 140 3 138 6.98e-65 194
Msa0925180 AT3G48970.3 76.471 136 32 0 5 140 3 138 6.98e-65 194
Msa0925180 AT3G56891.1 36.364 154 79 4 3 140 16 166 4.43e-28 102
Msa0925180 AT3G56891.2 36.552 145 74 3 12 140 1 143 8.50e-28 100
Msa0925180 AT4G08570.1 40.876 137 66 5 5 140 28 150 1.04e-24 92.8
Msa0925180 AT2G18196.2 37.879 132 68 4 14 140 3 125 8.22e-24 89.7
Msa0925180 AT2G18196.1 37.879 132 68 4 14 140 56 178 4.80e-23 89.4
Msa0925180 AT1G06330.1 37.342 158 66 9 5 140 4 150 6.18e-23 88.2
Msa0925180 AT1G71050.1 37.984 129 68 3 12 140 36 152 2.76e-22 86.7
Msa0925180 AT5G66110.3 37.857 140 70 5 5 140 21 147 1.39e-20 82.0
Msa0925180 AT5G66110.1 37.857 140 70 5 5 140 21 147 1.39e-20 82.0
Msa0925180 AT5G66110.2 37.594 133 67 4 12 140 1 121 3.05e-20 80.5
Msa0925180 AT4G35060.1 37.324 142 72 5 3 140 25 153 4.60e-20 80.9
Msa0925180 AT4G10465.1 37.410 139 76 5 5 140 53 183 1.04e-19 80.9
Msa0925180 AT1G22990.1 37.226 137 70 7 5 140 31 152 1.50e-19 79.7
Msa0925180 AT1G22990.2 37.692 130 66 6 12 140 32 147 2.06e-19 79.0
Msa0925180 AT4G39700.1 38.849 139 68 5 5 140 34 158 5.91e-19 78.2
Msa0925180 AT4G38580.1 32.857 140 80 3 3 140 26 153 3.36e-18 76.3
Msa0925180 AT4G38580.2 32.857 140 80 3 3 140 26 153 3.36e-18 76.3
Msa0925180 AT5G17450.1 35.766 137 72 6 5 140 28 149 9.45e-18 74.7
Msa0925180 AT1G29100.2 33.333 153 83 7 1 140 1 147 1.93e-16 71.6
Msa0925180 AT1G29100.1 32.653 147 80 7 7 140 1 141 5.04e-14 65.1
Msa0925180 AT5G17450.2 37.500 112 55 5 30 140 8 105 8.99e-13 60.8

Find 41 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACCAATAACTGTTTAAA+AGG 0.123298 6_2:-67976101 Msa0925180:five_prime_UTR
AAAGCTCTCTTCAAACTTAA+AGG 0.212136 6_2:-67975740 Msa0925180:intron
GAAGGAGTATGCCTCAAATA+TGG 0.262354 6_2:-67976192 Msa0925180:five_prime_UTR
ACAGACATTATTGCTTGTTT+AGG 0.316520 6_2:+67975934 None:intergenic
CACCCTTCACAATCAAGATT+TGG 0.359814 6_2:+67975779 None:intergenic
AGATGATGTAGAAGTTGAAA+TGG 0.361767 6_2:-67974624 Msa0925180:CDS
AAAATGAAGCAAAATGAGTA+TGG 0.404963 6_2:+67974495 None:intergenic
AAGGAGTATGCCTCAAATAT+GGG 0.432186 6_2:-67976191 Msa0925180:five_prime_UTR
TGAGTATGGCCAGGTAGAAA+TGG 0.434741 6_2:+67974509 None:intergenic
GTTGTGGTGTGGTCACTGTT+TGG 0.436064 6_2:+67976023 None:intergenic
GAACAAAGTGTCGTTGTTGT+TGG 0.437407 6_2:+67976050 None:intergenic
CTACTAAAGTGTTCTTTGAA+AGG 0.459973 6_2:+67976076 None:intergenic
TACAAAAGTGAAGCAACAAA+TGG 0.472564 6_2:-67974428 Msa0925180:CDS
GTACCAATAACTGTTTAAAA+GGG 0.475755 6_2:-67976100 Msa0925180:five_prime_UTR
AAGATAACAGTCAGAGGCTA+TGG 0.503785 6_2:-67974593 Msa0925180:CDS
TTGAAAGCAATCAAACGTGC+AGG 0.508044 6_2:-67974551 Msa0925180:CDS
TAATGATTAACAATGTAACT+TGG 0.510139 6_2:+67974464 None:intergenic
AACACTTCATAAGATTTCCC+TGG 0.533065 6_2:+67974194 None:intergenic
TACATTATAGTGCAAGCATG+AGG 0.547669 6_2:+67974317 None:intergenic
AGTTGCTGTTGCATCTGATG+AGG 0.552668 6_2:-67974369 Msa0925180:CDS
ATTGTTGTAGAATATGGTTG+AGG 0.553241 6_2:-67975810 Msa0925180:intron
GAAGCAAAATGAGTATGGCC+AGG 0.561335 6_2:+67974500 None:intergenic
GAACCATGGCCATTTCTACC+TGG 0.561424 6_2:-67974518 Msa0925180:CDS
AAGAGAGTTGTGTTCTGTTG+TGG 0.568287 6_2:+67976007 None:intergenic
GAAGAGGTGAAAGTTGAGTG+AGG 0.589555 6_2:-67974232 Msa0925180:three_prime_UTR
AGGAGTATGCCTCAAATATG+GGG 0.603014 6_2:-67976190 Msa0925180:five_prime_UTR
CATAATGAGAGACAAGGTGA+AGG 0.610425 6_2:-67976210 Msa0925180:five_prime_UTR
CAGGGAAAGCAGCAGAACCA+TGG 0.611728 6_2:-67974532 Msa0925180:CDS
CAGCAACTGAATAAACAGAA+GGG 0.615737 6_2:+67974384 None:intergenic
TGATGTAGAAGTTGAAATGG+AGG 0.626665 6_2:-67974621 Msa0925180:CDS
AGCAACTGAATAAACAGAAG+GGG 0.630032 6_2:+67974385 None:intergenic
ACAGCAACTGAATAAACAGA+AGG 0.630530 6_2:+67974383 None:intergenic
AGTTGTGTTCTGTTGTGGTG+TGG 0.634601 6_2:+67976012 None:intergenic
GTGCCAAATCTTGATTGTGA+AGG 0.640152 6_2:-67975782 Msa0925180:CDS
TGGCCAGGTAGAAATGGCCA+TGG 0.640241 6_2:+67974515 None:intergenic
TGCCAAATCTTGATTGTGAA+GGG 0.643692 6_2:-67975781 Msa0925180:CDS
ACATTATAGTGCAAGCATGA+GGG 0.647161 6_2:+67974318 None:intergenic
TGAAAGCAATCAAACGTGCA+GGG 0.647389 6_2:-67974550 Msa0925180:CDS
GCACAAAAGATAACAGTCAG+AGG 0.657965 6_2:-67974599 Msa0925180:CDS
ATGAGACATAATGAGAGACA+AGG 0.689159 6_2:-67976216 Msa0925180:five_prime_UTR
GGAGTATGCCTCAAATATGG+GGG 0.690405 6_2:-67976189 Msa0925180:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTATAATAGTGAT+CGG + chr6_2:67975397-67975416 None:intergenic 10.0%
!! TTGTTTATTGAATTTAAAAA+TGG - chr6_2:67975481-67975500 Msa0925180:intron 10.0%
!!! AATTTAAAACTTTCTTTTTT+GGG + chr6_2:67975566-67975585 None:intergenic 10.0%
!!! TTTTTATTTATAATAGTGAT+CGG + chr6_2:67975397-67975416 None:intergenic 10.0%
!! TTGTTTATTGAATTTAAAAA+TGG - chr6_2:67975481-67975500 Msa0925180:intron 10.0%
!!! AATTTAAAACTTTCTTTTTT+GGG + chr6_2:67975566-67975585 None:intergenic 10.0%
!! AATAGTTGATTAGAATAATT+TGG + chr6_2:67975192-67975211 None:intergenic 15.0%
!! TCATTGTCTTAAATTATTAA+TGG - chr6_2:67975334-67975353 Msa0925180:intron 15.0%
!!! CAATTTAAAACTTTCTTTTT+TGG + chr6_2:67975567-67975586 None:intergenic 15.0%
!!! AGAAAGTTTTAAATTGAAAA+AGG - chr6_2:67975571-67975590 Msa0925180:intron 15.0%
!! AATAGTTGATTAGAATAATT+TGG + chr6_2:67975192-67975211 None:intergenic 15.0%
!! TCATTGTCTTAAATTATTAA+TGG - chr6_2:67975334-67975353 Msa0925180:intron 15.0%
!!! CAATTTAAAACTTTCTTTTT+TGG + chr6_2:67975567-67975586 None:intergenic 15.0%
!!! AGAAAGTTTTAAATTGAAAA+AGG - chr6_2:67975571-67975590 Msa0925180:intron 15.0%
!!! TAAACATATTTTGAACCTTA+GGG + chr6_2:67974501-67974520 None:intergenic 20.0%
!!! ATAAACATATTTTGAACCTT+AGG + chr6_2:67974502-67974521 None:intergenic 20.0%
!! GATTAAATTATGACTAATGT+TGG - chr6_2:67974539-67974558 Msa0925180:CDS 20.0%
!! GAATATATTGTTGTAGAATA+TGG - chr6_2:67974571-67974590 Msa0925180:CDS 20.0%
!!! TTCATATAACATCTTTTGTT+CGG - chr6_2:67974889-67974908 Msa0925180:intron 20.0%
!! TTTGTACATATGAAGTAATT+TGG - chr6_2:67974960-67974979 Msa0925180:intron 20.0%
!! TTGTACATATGAAGTAATTT+GGG - chr6_2:67974961-67974980 Msa0925180:intron 20.0%
!!! TAAAAAAAAGCATGTGATTT+TGG + chr6_2:67975003-67975022 None:intergenic 20.0%
!!! AAATCACATGCTTTTTTTTA+AGG - chr6_2:67975003-67975022 Msa0925180:intron 20.0%
!!! ATCAACTATTCATTTGTTTT+TGG - chr6_2:67975202-67975221 Msa0925180:intron 20.0%
!! AATGTAATGCATACTATATT+TGG - chr6_2:67975633-67975652 Msa0925180:intron 20.0%
!! TAATGATTAACAATGTAACT+TGG + chr6_2:67975926-67975945 None:intergenic 20.0%
!!! TAAACATATTTTGAACCTTA+GGG + chr6_2:67974501-67974520 None:intergenic 20.0%
!!! ATAAACATATTTTGAACCTT+AGG + chr6_2:67974502-67974521 None:intergenic 20.0%
!! GATTAAATTATGACTAATGT+TGG - chr6_2:67974539-67974558 Msa0925180:CDS 20.0%
!! GAATATATTGTTGTAGAATA+TGG - chr6_2:67974571-67974590 Msa0925180:CDS 20.0%
!!! TTCATATAACATCTTTTGTT+CGG - chr6_2:67974889-67974908 Msa0925180:intron 20.0%
!! TTTGTACATATGAAGTAATT+TGG - chr6_2:67974960-67974979 Msa0925180:intron 20.0%
!! TTGTACATATGAAGTAATTT+GGG - chr6_2:67974961-67974980 Msa0925180:intron 20.0%
!!! TAAAAAAAAGCATGTGATTT+TGG + chr6_2:67975003-67975022 None:intergenic 20.0%
!!! AAATCACATGCTTTTTTTTA+AGG - chr6_2:67975003-67975022 Msa0925180:intron 20.0%
!!! ATCAACTATTCATTTGTTTT+TGG - chr6_2:67975202-67975221 Msa0925180:intron 20.0%
!! AATGTAATGCATACTATATT+TGG - chr6_2:67975633-67975652 Msa0925180:intron 20.0%
!! TAATGATTAACAATGTAACT+TGG + chr6_2:67975926-67975945 None:intergenic 20.0%
!! AAAAAAAGGTTGTTGTGTTT+TGG + chr6_2:67974267-67974286 None:intergenic 25.0%
! ACAGTTATTGGTACAAAAAA+AGG + chr6_2:67974281-67974300 None:intergenic 25.0%
! TGTACCAATAACTGTTTAAA+AGG - chr6_2:67974286-67974305 Msa0925180:three_prime_UTR 25.0%
! GTACCAATAACTGTTTAAAA+GGG - chr6_2:67974287-67974306 Msa0925180:three_prime_UTR 25.0%
!!! TGTTTATGTCTTTTAAGAGT+TGG - chr6_2:67974515-67974534 Msa0925180:CDS 25.0%
!! GAAAATTGCTATGTGATTTT+GGG + chr6_2:67974821-67974840 None:intergenic 25.0%
!! AGAAAATTGCTATGTGATTT+TGG + chr6_2:67974822-67974841 None:intergenic 25.0%
! GTGATATTTAAGAAATGAGA+GGG + chr6_2:67974848-67974867 None:intergenic 25.0%
! TGTGATATTTAAGAAATGAG+AGG + chr6_2:67974849-67974868 None:intergenic 25.0%
! TGTACATATGAAGTAATTTG+GGG - chr6_2:67974962-67974981 Msa0925180:intron 25.0%
!! TTCAAAATGAATGTCGTTTA+AGG - chr6_2:67975128-67975147 Msa0925180:intron 25.0%
!! TTTTGTCTAACTTCTATGTT+TGG - chr6_2:67975293-67975312 Msa0925180:intron 25.0%
!! AACTTCTATGTTTGGAATTA+TGG - chr6_2:67975301-67975320 Msa0925180:intron 25.0%
! CGGTTCACTATTATAAAAAA+AGG + chr6_2:67975703-67975722 None:intergenic 25.0%
!! CAAAAATCAGTTACTTTACT+CGG + chr6_2:67975723-67975742 None:intergenic 25.0%
!!! TTTTTGATTGCCTGATTTAT+AGG - chr6_2:67975737-67975756 Msa0925180:intron 25.0%
! AAAATGAAGCAAAATGAGTA+TGG + chr6_2:67975895-67975914 None:intergenic 25.0%
!!! TTTTTGAAATGAAGATGAAG+AGG - chr6_2:67976139-67976158 Msa0925180:five_prime_UTR 25.0%
!! AGTGTTTTGTGTTTGTTTAT+TGG - chr6_2:67976210-67976229 Msa0925180:five_prime_UTR 25.0%
!! AAAAAAAGGTTGTTGTGTTT+TGG + chr6_2:67974267-67974286 None:intergenic 25.0%
! ACAGTTATTGGTACAAAAAA+AGG + chr6_2:67974281-67974300 None:intergenic 25.0%
! TGTACCAATAACTGTTTAAA+AGG - chr6_2:67974286-67974305 Msa0925180:three_prime_UTR 25.0%
! GTACCAATAACTGTTTAAAA+GGG - chr6_2:67974287-67974306 Msa0925180:three_prime_UTR 25.0%
!!! TGTTTATGTCTTTTAAGAGT+TGG - chr6_2:67974515-67974534 Msa0925180:CDS 25.0%
!! GAAAATTGCTATGTGATTTT+GGG + chr6_2:67974821-67974840 None:intergenic 25.0%
!! AGAAAATTGCTATGTGATTT+TGG + chr6_2:67974822-67974841 None:intergenic 25.0%
! GTGATATTTAAGAAATGAGA+GGG + chr6_2:67974848-67974867 None:intergenic 25.0%
! TGTGATATTTAAGAAATGAG+AGG + chr6_2:67974849-67974868 None:intergenic 25.0%
! TGTACATATGAAGTAATTTG+GGG - chr6_2:67974962-67974981 Msa0925180:intron 25.0%
!! TTCAAAATGAATGTCGTTTA+AGG - chr6_2:67975128-67975147 Msa0925180:intron 25.0%
!! TTTTGTCTAACTTCTATGTT+TGG - chr6_2:67975293-67975312 Msa0925180:intron 25.0%
!! AACTTCTATGTTTGGAATTA+TGG - chr6_2:67975301-67975320 Msa0925180:intron 25.0%
! CGGTTCACTATTATAAAAAA+AGG + chr6_2:67975703-67975722 None:intergenic 25.0%
!! CAAAAATCAGTTACTTTACT+CGG + chr6_2:67975723-67975742 None:intergenic 25.0%
!!! TTTTTGATTGCCTGATTTAT+AGG - chr6_2:67975737-67975756 Msa0925180:intron 25.0%
! AAAATGAAGCAAAATGAGTA+TGG + chr6_2:67975895-67975914 None:intergenic 25.0%
!!! TTTTTGAAATGAAGATGAAG+AGG - chr6_2:67976139-67976158 Msa0925180:five_prime_UTR 25.0%
!! AGTGTTTTGTGTTTGTTTAT+TGG - chr6_2:67976210-67976229 Msa0925180:five_prime_UTR 25.0%
! CTACTAAAGTGTTCTTTGAA+AGG + chr6_2:67974314-67974333 None:intergenic 30.0%
ACAGACATTATTGCTTGTTT+AGG + chr6_2:67974456-67974475 None:intergenic 30.0%
ATTGTTGTAGAATATGGTTG+AGG - chr6_2:67974577-67974596 Msa0925180:CDS 30.0%
AAAGCTCTCTTCAAACTTAA+AGG - chr6_2:67974647-67974666 Msa0925180:intron 30.0%
! TTGTACCCTTTAATTTCTTG+TGG - chr6_2:67974723-67974742 Msa0925180:intron 30.0%
CATTGCCACAAGAAATTAAA+GGG + chr6_2:67974731-67974750 None:intergenic 30.0%
TCATTGCCACAAGAAATTAA+AGG + chr6_2:67974732-67974751 None:intergenic 30.0%
TAATTTCTTGTGGCAATGAA+TGG - chr6_2:67974733-67974752 Msa0925180:intron 30.0%
ATATTTAAGAAATGAGAGGG+TGG + chr6_2:67974845-67974864 None:intergenic 30.0%
ATCTCGAAGAAGAAAAAACA+CGG + chr6_2:67974941-67974960 None:intergenic 30.0%
GTACATATGAAGTAATTTGG+GGG - chr6_2:67974963-67974982 Msa0925180:intron 30.0%
! TTTTAATGGTAACTCACTCA+GGG + chr6_2:67975053-67975072 None:intergenic 30.0%
! AAGCAACACTTGACTTTTAA+TGG + chr6_2:67975067-67975086 None:intergenic 30.0%
!!! ATTCATTTTGAAACTGAGAG+AGG + chr6_2:67975120-67975139 None:intergenic 30.0%
! ATGGTTAACATTTCCCTTTT+TGG - chr6_2:67975500-67975519 Msa0925180:intron 30.0%
! TGGTTAACATTTCCCTTTTT+GGG - chr6_2:67975501-67975520 Msa0925180:intron 30.0%
!!! GGCACTTTATTGACTTTTAA+AGG - chr6_2:67975592-67975611 Msa0925180:intron 30.0%
ATCATCTACTCCTATAAATC+AGG + chr6_2:67975750-67975769 None:intergenic 30.0%
AGATGATGTAGAAGTTGAAA+TGG - chr6_2:67975763-67975782 Msa0925180:CDS 30.0%
TACAAAAGTGAAGCAACAAA+TGG - chr6_2:67975959-67975978 Msa0925180:five_prime_UTR 30.0%
! CTACTAAAGTGTTCTTTGAA+AGG + chr6_2:67974314-67974333 None:intergenic 30.0%
ACAGACATTATTGCTTGTTT+AGG + chr6_2:67974456-67974475 None:intergenic 30.0%
ATTGTTGTAGAATATGGTTG+AGG - chr6_2:67974577-67974596 Msa0925180:CDS 30.0%
AAAGCTCTCTTCAAACTTAA+AGG - chr6_2:67974647-67974666 Msa0925180:intron 30.0%
! TTGTACCCTTTAATTTCTTG+TGG - chr6_2:67974723-67974742 Msa0925180:intron 30.0%
CATTGCCACAAGAAATTAAA+GGG + chr6_2:67974731-67974750 None:intergenic 30.0%
TCATTGCCACAAGAAATTAA+AGG + chr6_2:67974732-67974751 None:intergenic 30.0%
TAATTTCTTGTGGCAATGAA+TGG - chr6_2:67974733-67974752 Msa0925180:intron 30.0%
ATATTTAAGAAATGAGAGGG+TGG + chr6_2:67974845-67974864 None:intergenic 30.0%
ATCTCGAAGAAGAAAAAACA+CGG + chr6_2:67974941-67974960 None:intergenic 30.0%
GTACATATGAAGTAATTTGG+GGG - chr6_2:67974963-67974982 Msa0925180:intron 30.0%
! TTTTAATGGTAACTCACTCA+GGG + chr6_2:67975053-67975072 None:intergenic 30.0%
! AAGCAACACTTGACTTTTAA+TGG + chr6_2:67975067-67975086 None:intergenic 30.0%
!!! ATTCATTTTGAAACTGAGAG+AGG + chr6_2:67975120-67975139 None:intergenic 30.0%
! ATGGTTAACATTTCCCTTTT+TGG - chr6_2:67975500-67975519 Msa0925180:intron 30.0%
! TGGTTAACATTTCCCTTTTT+GGG - chr6_2:67975501-67975520 Msa0925180:intron 30.0%
!!! GGCACTTTATTGACTTTTAA+AGG - chr6_2:67975592-67975611 Msa0925180:intron 30.0%
ATCATCTACTCCTATAAATC+AGG + chr6_2:67975750-67975769 None:intergenic 30.0%
AGATGATGTAGAAGTTGAAA+TGG - chr6_2:67975763-67975782 Msa0925180:CDS 30.0%
TACAAAAGTGAAGCAACAAA+TGG - chr6_2:67975959-67975978 Msa0925180:five_prime_UTR 30.0%
! AAGGAGTATGCCTCAAATAT+GGG - chr6_2:67974196-67974215 Msa0925180:three_prime_UTR 35.0%
! GGTCCCTTTTAAACAGTTAT+TGG + chr6_2:67974293-67974312 None:intergenic 35.0%
TGAACCTTAGGGAAAATAGA+GGG + chr6_2:67974490-67974509 None:intergenic 35.0%
TTGAACCTTAGGGAAAATAG+AGG + chr6_2:67974491-67974510 None:intergenic 35.0%
TGACTAATGTTGGTGTAATG+TGG - chr6_2:67974549-67974568 Msa0925180:CDS 35.0%
TGCCAAATCTTGATTGTGAA+GGG - chr6_2:67974606-67974625 Msa0925180:CDS 35.0%
! CTTTTAATGGTAACTCACTC+AGG + chr6_2:67975054-67975073 None:intergenic 35.0%
! TAATCTAAAGCAGGTGTAGT+GGG + chr6_2:67975096-67975115 None:intergenic 35.0%
! ATAATCTAAAGCAGGTGTAG+TGG + chr6_2:67975097-67975116 None:intergenic 35.0%
TGATGTAGAAGTTGAAATGG+AGG - chr6_2:67975766-67975785 Msa0925180:CDS 35.0%
AGCAACTGAATAAACAGAAG+GGG + chr6_2:67976005-67976024 None:intergenic 35.0%
CAGCAACTGAATAAACAGAA+GGG + chr6_2:67976006-67976025 None:intergenic 35.0%
ACAGCAACTGAATAAACAGA+AGG + chr6_2:67976007-67976026 None:intergenic 35.0%
ACATTATAGTGCAAGCATGA+GGG + chr6_2:67976072-67976091 None:intergenic 35.0%
TACATTATAGTGCAAGCATG+AGG + chr6_2:67976073-67976092 None:intergenic 35.0%
AACACTTCATAAGATTTCCC+TGG + chr6_2:67976196-67976215 None:intergenic 35.0%
! AAGGAGTATGCCTCAAATAT+GGG - chr6_2:67974196-67974215 Msa0925180:three_prime_UTR 35.0%
! GGTCCCTTTTAAACAGTTAT+TGG + chr6_2:67974293-67974312 None:intergenic 35.0%
TGAACCTTAGGGAAAATAGA+GGG + chr6_2:67974490-67974509 None:intergenic 35.0%
TTGAACCTTAGGGAAAATAG+AGG + chr6_2:67974491-67974510 None:intergenic 35.0%
TGACTAATGTTGGTGTAATG+TGG - chr6_2:67974549-67974568 Msa0925180:CDS 35.0%
TGCCAAATCTTGATTGTGAA+GGG - chr6_2:67974606-67974625 Msa0925180:CDS 35.0%
! CTTTTAATGGTAACTCACTC+AGG + chr6_2:67975054-67975073 None:intergenic 35.0%
! TAATCTAAAGCAGGTGTAGT+GGG + chr6_2:67975096-67975115 None:intergenic 35.0%
! ATAATCTAAAGCAGGTGTAG+TGG + chr6_2:67975097-67975116 None:intergenic 35.0%
TGATGTAGAAGTTGAAATGG+AGG - chr6_2:67975766-67975785 Msa0925180:CDS 35.0%
AGCAACTGAATAAACAGAAG+GGG + chr6_2:67976005-67976024 None:intergenic 35.0%
CAGCAACTGAATAAACAGAA+GGG + chr6_2:67976006-67976025 None:intergenic 35.0%
ACAGCAACTGAATAAACAGA+AGG + chr6_2:67976007-67976026 None:intergenic 35.0%
ACATTATAGTGCAAGCATGA+GGG + chr6_2:67976072-67976091 None:intergenic 35.0%
TACATTATAGTGCAAGCATG+AGG + chr6_2:67976073-67976092 None:intergenic 35.0%
AACACTTCATAAGATTTCCC+TGG + chr6_2:67976196-67976215 None:intergenic 35.0%
CATAATGAGAGACAAGGTGA+AGG - chr6_2:67974177-67974196 Msa0925180:three_prime_UTR 40.0%
! GAAGGAGTATGCCTCAAATA+TGG - chr6_2:67974195-67974214 Msa0925180:three_prime_UTR 40.0%
! AGGAGTATGCCTCAAATATG+GGG - chr6_2:67974197-67974216 Msa0925180:three_prime_UTR 40.0%
!! GAACAAAGTGTCGTTGTTGT+TGG + chr6_2:67974340-67974359 None:intergenic 40.0%
AAGAGAGTTGTGTTCTGTTG+TGG + chr6_2:67974383-67974402 None:intergenic 40.0%
! TTCTCCCTCTATTTTCCCTA+AGG - chr6_2:67974483-67974502 Msa0925180:CDS 40.0%
GTGCCAAATCTTGATTGTGA+AGG - chr6_2:67974605-67974624 Msa0925180:CDS 40.0%
CACCCTTCACAATCAAGATT+TGG + chr6_2:67974611-67974630 None:intergenic 40.0%
TTTCTTGTGGCAATGAATGG+TGG - chr6_2:67974736-67974755 Msa0925180:intron 40.0%
TGGCCTAAAGGAACATTCTT+TGG - chr6_2:67974762-67974781 Msa0925180:intron 40.0%
GGCCTAAAGGAACATTCTTT+GGG - chr6_2:67974763-67974782 Msa0925180:intron 40.0%
GCCTAAAGGAACATTCTTTG+GGG - chr6_2:67974764-67974783 Msa0925180:intron 40.0%
! GAGAGAGGATAATCTAAAGC+AGG + chr6_2:67975105-67975124 None:intergenic 40.0%
CGGTTAACATGACCCAAAAA+GGG + chr6_2:67975516-67975535 None:intergenic 40.0%
!!! CCTTTTTGGGTCATGTTAAC+CGG - chr6_2:67975514-67975533 Msa0925180:intron 40.0%
AAATGTTAACCAGTGCCTCA+GGG + chr6_2:67975680-67975699 None:intergenic 40.0%
GCACAAAAGATAACAGTCAG+AGG - chr6_2:67975788-67975807 Msa0925180:CDS 40.0%
AAGATAACAGTCAGAGGCTA+TGG - chr6_2:67975794-67975813 Msa0925180:CDS 40.0%
TTGAAAGCAATCAAACGTGC+AGG - chr6_2:67975836-67975855 Msa0925180:intron 40.0%
TGAAAGCAATCAAACGTGCA+GGG - chr6_2:67975837-67975856 Msa0925180:intron 40.0%
CATAATGAGAGACAAGGTGA+AGG - chr6_2:67974177-67974196 Msa0925180:three_prime_UTR 40.0%
! GAAGGAGTATGCCTCAAATA+TGG - chr6_2:67974195-67974214 Msa0925180:three_prime_UTR 40.0%
! AGGAGTATGCCTCAAATATG+GGG - chr6_2:67974197-67974216 Msa0925180:three_prime_UTR 40.0%
!! GAACAAAGTGTCGTTGTTGT+TGG + chr6_2:67974340-67974359 None:intergenic 40.0%
AAGAGAGTTGTGTTCTGTTG+TGG + chr6_2:67974383-67974402 None:intergenic 40.0%
! TTCTCCCTCTATTTTCCCTA+AGG - chr6_2:67974483-67974502 Msa0925180:CDS 40.0%
GTGCCAAATCTTGATTGTGA+AGG - chr6_2:67974605-67974624 Msa0925180:CDS 40.0%
CACCCTTCACAATCAAGATT+TGG + chr6_2:67974611-67974630 None:intergenic 40.0%
TTTCTTGTGGCAATGAATGG+TGG - chr6_2:67974736-67974755 Msa0925180:intron 40.0%
TGGCCTAAAGGAACATTCTT+TGG - chr6_2:67974762-67974781 Msa0925180:intron 40.0%
GGCCTAAAGGAACATTCTTT+GGG - chr6_2:67974763-67974782 Msa0925180:intron 40.0%
GCCTAAAGGAACATTCTTTG+GGG - chr6_2:67974764-67974783 Msa0925180:intron 40.0%
! GAGAGAGGATAATCTAAAGC+AGG + chr6_2:67975105-67975124 None:intergenic 40.0%
CGGTTAACATGACCCAAAAA+GGG + chr6_2:67975516-67975535 None:intergenic 40.0%
!!! CCTTTTTGGGTCATGTTAAC+CGG - chr6_2:67975514-67975533 Msa0925180:intron 40.0%
AAATGTTAACCAGTGCCTCA+GGG + chr6_2:67975680-67975699 None:intergenic 40.0%
GCACAAAAGATAACAGTCAG+AGG - chr6_2:67975788-67975807 Msa0925180:CDS 40.0%
AAGATAACAGTCAGAGGCTA+TGG - chr6_2:67975794-67975813 Msa0925180:CDS 40.0%
TTGAAAGCAATCAAACGTGC+AGG - chr6_2:67975836-67975855 Msa0925180:intron 40.0%
TGAAAGCAATCAAACGTGCA+GGG - chr6_2:67975837-67975856 Msa0925180:intron 40.0%
GGAGTATGCCTCAAATATGG+GGG - chr6_2:67974198-67974217 Msa0925180:three_prime_UTR 45.0%
! TATGGGGGAGCGCAATAAAA+AGG - chr6_2:67974213-67974232 Msa0925180:three_prime_UTR 45.0%
! GCGCAATAAAAAGGCATGCT+TGG - chr6_2:67974222-67974241 Msa0925180:three_prime_UTR 45.0%
AGTTGTGTTCTGTTGTGGTG+TGG + chr6_2:67974378-67974397 None:intergenic 45.0%
GCCCCAAAGAATGTTCCTTT+AGG + chr6_2:67974768-67974787 None:intergenic 45.0%
CCGGTTAACATGACCCAAAA+AGG + chr6_2:67975517-67975536 None:intergenic 45.0%
AATGTTAACCAGTGCCTCAG+GGG + chr6_2:67975679-67975698 None:intergenic 45.0%
GAAATGTTAACCAGTGCCTC+AGG + chr6_2:67975681-67975700 None:intergenic 45.0%
TGAGTATGGCCAGGTAGAAA+TGG + chr6_2:67975881-67975900 None:intergenic 45.0%
GAAGCAAAATGAGTATGGCC+AGG + chr6_2:67975890-67975909 None:intergenic 45.0%
! AGTTGCTGTTGCATCTGATG+AGG - chr6_2:67976018-67976037 Msa0925180:five_prime_UTR 45.0%
GAAGAGGTGAAAGTTGAGTG+AGG - chr6_2:67976155-67976174 Msa0925180:five_prime_UTR 45.0%
!! AGGCATGTTTTTGCACTTCC+AGG - chr6_2:67976175-67976194 Msa0925180:five_prime_UTR 45.0%
!! GGCATGTTTTTGCACTTCCA+GGG - chr6_2:67976176-67976195 Msa0925180:five_prime_UTR 45.0%
GGAGTATGCCTCAAATATGG+GGG - chr6_2:67974198-67974217 Msa0925180:three_prime_UTR 45.0%
! TATGGGGGAGCGCAATAAAA+AGG - chr6_2:67974213-67974232 Msa0925180:three_prime_UTR 45.0%
! GCGCAATAAAAAGGCATGCT+TGG - chr6_2:67974222-67974241 Msa0925180:three_prime_UTR 45.0%
AGTTGTGTTCTGTTGTGGTG+TGG + chr6_2:67974378-67974397 None:intergenic 45.0%
GCCCCAAAGAATGTTCCTTT+AGG + chr6_2:67974768-67974787 None:intergenic 45.0%
CCGGTTAACATGACCCAAAA+AGG + chr6_2:67975517-67975536 None:intergenic 45.0%
AATGTTAACCAGTGCCTCAG+GGG + chr6_2:67975679-67975698 None:intergenic 45.0%
GAAATGTTAACCAGTGCCTC+AGG + chr6_2:67975681-67975700 None:intergenic 45.0%
TGAGTATGGCCAGGTAGAAA+TGG + chr6_2:67975881-67975900 None:intergenic 45.0%
GAAGCAAAATGAGTATGGCC+AGG + chr6_2:67975890-67975909 None:intergenic 45.0%
! AGTTGCTGTTGCATCTGATG+AGG - chr6_2:67976018-67976037 Msa0925180:five_prime_UTR 45.0%
GAAGAGGTGAAAGTTGAGTG+AGG - chr6_2:67976155-67976174 Msa0925180:five_prime_UTR 45.0%
!! AGGCATGTTTTTGCACTTCC+AGG - chr6_2:67976175-67976194 Msa0925180:five_prime_UTR 45.0%
!! GGCATGTTTTTGCACTTCCA+GGG - chr6_2:67976176-67976195 Msa0925180:five_prime_UTR 45.0%
ATTGCGCTCCCCCATATTTG+AGG + chr6_2:67974209-67974228 None:intergenic 50.0%
GTTGTGGTGTGGTCACTGTT+TGG + chr6_2:67974367-67974386 None:intergenic 50.0%
!! GTGGCAATGAATGGTGGACA+TGG - chr6_2:67974742-67974761 Msa0925180:intron 50.0%
!! GAATGGTGGACATGGCCTAA+AGG - chr6_2:67974750-67974769 Msa0925180:intron 50.0%
! TCTAAAGCAGGTGTAGTGGG+TGG + chr6_2:67975093-67975112 None:intergenic 50.0%
TTTCTTAACCTGTGCCCCGA+GGG + chr6_2:67975542-67975561 None:intergenic 50.0%
! TTTTCTTAACCTGTGCCCCG+AGG + chr6_2:67975543-67975562 None:intergenic 50.0%
TGGTTCTTAACCAGTGCCTC+TGG - chr6_2:67975653-67975672 Msa0925180:intron 50.0%
GAACCATGGCCATTTCTACC+TGG - chr6_2:67975869-67975888 Msa0925180:intron 50.0%
ATTGCGCTCCCCCATATTTG+AGG + chr6_2:67974209-67974228 None:intergenic 50.0%
GTTGTGGTGTGGTCACTGTT+TGG + chr6_2:67974367-67974386 None:intergenic 50.0%
!! GTGGCAATGAATGGTGGACA+TGG - chr6_2:67974742-67974761 Msa0925180:intron 50.0%
!! GAATGGTGGACATGGCCTAA+AGG - chr6_2:67974750-67974769 Msa0925180:intron 50.0%
! TCTAAAGCAGGTGTAGTGGG+TGG + chr6_2:67975093-67975112 None:intergenic 50.0%
TTTCTTAACCTGTGCCCCGA+GGG + chr6_2:67975542-67975561 None:intergenic 50.0%
! TTTTCTTAACCTGTGCCCCG+AGG + chr6_2:67975543-67975562 None:intergenic 50.0%
TGGTTCTTAACCAGTGCCTC+TGG - chr6_2:67975653-67975672 Msa0925180:intron 50.0%
GAACCATGGCCATTTCTACC+TGG - chr6_2:67975869-67975888 Msa0925180:intron 50.0%
GTCATGTTAACCGGTGCCCT+CGG - chr6_2:67975523-67975542 Msa0925180:intron 55.0%
TCATGTTAACCGGTGCCCTC+GGG - chr6_2:67975524-67975543 Msa0925180:intron 55.0%
CAGGGAAAGCAGCAGAACCA+TGG - chr6_2:67975855-67975874 Msa0925180:intron 55.0%
TGGCCAGGTAGAAATGGCCA+TGG + chr6_2:67975875-67975894 None:intergenic 55.0%
GTCATGTTAACCGGTGCCCT+CGG - chr6_2:67975523-67975542 Msa0925180:intron 55.0%
TCATGTTAACCGGTGCCCTC+GGG - chr6_2:67975524-67975543 Msa0925180:intron 55.0%
CAGGGAAAGCAGCAGAACCA+TGG - chr6_2:67975855-67975874 Msa0925180:intron 55.0%
TGGCCAGGTAGAAATGGCCA+TGG + chr6_2:67975875-67975894 None:intergenic 55.0%
CATGTTAACCGGTGCCCTCG+GGG - chr6_2:67975525-67975544 Msa0925180:intron 60.0%
CATGTTAACCGGTGCCCTCG+GGG - chr6_2:67975525-67975544 Msa0925180:intron 60.0%
! AACCTGTGCCCCGAGGGCAC+CGG + chr6_2:67975536-67975555 None:intergenic 70.0%
ACCAGTGCCTCTGGCCCCTG+AGG - chr6_2:67975662-67975681 Msa0925180:intron 70.0%
ACCAGTGCCTCAGGGGCCAG+AGG + chr6_2:67975672-67975691 None:intergenic 70.0%
! AACCTGTGCCCCGAGGGCAC+CGG + chr6_2:67975536-67975555 None:intergenic 70.0%
ACCAGTGCCTCTGGCCCCTG+AGG - chr6_2:67975662-67975681 Msa0925180:intron 70.0%
ACCAGTGCCTCAGGGGCCAG+AGG + chr6_2:67975672-67975691 None:intergenic 70.0%
AACCGGTGCCCTCGGGGCAC+AGG - chr6_2:67975531-67975550 Msa0925180:intron 75.0%
! GCCTCAGGGGCCAGAGGCAC+TGG + chr6_2:67975666-67975685 None:intergenic 75.0%
GCCTCTGGCCCCTGAGGCAC+TGG - chr6_2:67975668-67975687 Msa0925180:intron 75.0%
AACCGGTGCCCTCGGGGCAC+AGG - chr6_2:67975531-67975550 Msa0925180:intron 75.0%
! GCCTCAGGGGCCAGAGGCAC+TGG + chr6_2:67975666-67975685 None:intergenic 75.0%
GCCTCTGGCCCCTGAGGCAC+TGG - chr6_2:67975668-67975687 Msa0925180:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 67974173 67976236 67974173 ID=Msa0925180;Name=Msa0925180
chr6_2 mRNA 67974173 67976236 67974173 ID=Msa0925180-mRNA-1;Parent=Msa0925180;Name=Msa0925180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=295|1|1|1|1|1|3|143|140
chr6_2 exon 67974173 67974650 67974173 ID=Msa0925180-mRNA-1:exon:10767;Parent=Msa0925180-mRNA-1
chr6_2 exon 67975741 67975822 67975741 ID=Msa0925180-mRNA-1:exon:10766;Parent=Msa0925180-mRNA-1
chr6_2 exon 67975936 67976236 67975936 ID=Msa0925180-mRNA-1:exon:10765;Parent=Msa0925180-mRNA-1
chr6_2 five_prime_UTR 67975942 67976236 67975942 ID=Msa0925180-mRNA-1:five_prime_utr;Parent=Msa0925180-mRNA-1
chr6_2 CDS 67975936 67975941 67975936 ID=Msa0925180-mRNA-1:cds;Parent=Msa0925180-mRNA-1
chr6_2 CDS 67975741 67975822 67975741 ID=Msa0925180-mRNA-1:cds;Parent=Msa0925180-mRNA-1
chr6_2 CDS 67974316 67974650 67974316 ID=Msa0925180-mRNA-1:cds;Parent=Msa0925180-mRNA-1
chr6_2 three_prime_UTR 67974173 67974315 67974173 ID=Msa0925180-mRNA-1:three_prime_utr;Parent=Msa0925180-mRNA-1
Gene Sequence

>Msa0925180

ATGTCTAATATGGTTGAGGTTAGAGTGCCAAATCTTGATTGTGAAGGGTGTGCTTCAAAATTAAAGAAAGCTCTCTTCAAACTTAAAGGAGTAGATGATGTAGAAGTTGAAATGGAGGCACAAAAGATAACAGTCAGAGGCTATGGTTTAGAAGAAAAAAAAGTATTGAAAGCAATCAAACGTGCAGGGAAAGCAGCAGAACCATGGCCATTTCTACCTGGCCATACTCATTTTGCTTCATTTTACAAGTATCCAAGTTACATTGTTAATCATTATTATAATGATGCATACAAAAGTGAAGCAACAAATGGAGTTCATACTTTTTTTCATACCCCTTCTGTTTATTCAGTTGCTGTTGCATCTGATGAGGCTTTTGCTTCAATGTTTAGTGATGATAACCCTCATGCTTGCACTATAATGTAA

Protein sequence

>Msa0925180

MSNMVEVRVPNLDCEGCASKLKKALFKLKGVDDVEVEMEAQKITVRGYGLEEKKVLKAIKRAGKAAEPWPFLPGHTHFASFYKYPSYIVNHYYNDAYKSEATNGVHTFFHTPSVYSVAVASDEAFASMFSDDNPHACTIM*