Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0925180 | PNY08923.1 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 2.42e-100 | 293 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0925180 | sp|Q84K70|HIP31_ARATH | 75.714 | 140 | 34 | 0 | 1 | 140 | 1 | 140 | 3.88e-65 | 197 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000190 | Msa0925180 | 0.858334 | 8.847119e-63 | -8.615850e-47 |
Msa0003700 | Msa0925180 | 0.810893 | 9.190511e-51 | -8.615850e-47 |
Msa0007480 | Msa0925180 | 0.818090 | 2.350045e-52 | -8.615850e-47 |
Msa0017510 | Msa0925180 | 0.863902 | 1.786431e-64 | -8.615850e-47 |
Msa0018160 | Msa0925180 | 0.802968 | 4.360772e-49 | -8.615850e-47 |
Msa0024550 | Msa0925180 | 0.814947 | 1.188121e-51 | -8.615850e-47 |
Msa0026800 | Msa0925180 | 0.822690 | 2.069374e-53 | -8.615850e-47 |
Msa0027230 | Msa0925180 | 0.803877 | 2.826600e-49 | -8.615850e-47 |
Msa0028420 | Msa0925180 | 0.832441 | 9.437390e-56 | -8.615850e-47 |
Msa0028640 | Msa0925180 | 0.832557 | 8.832050e-56 | -8.615850e-47 |
Msa0034270 | Msa0925180 | 0.804910 | 1.722044e-49 | -8.615850e-47 |
Msa0042610 | Msa0925180 | 0.811719 | 6.081864e-51 | -8.615850e-47 |
Msa0063890 | Msa0925180 | 0.814290 | 1.661246e-51 | -8.615850e-47 |
Msa0074240 | Msa0925180 | 0.813594 | 2.365041e-51 | -8.615850e-47 |
Msa0075220 | Msa0925180 | 0.824025 | 1.009326e-53 | -8.615850e-47 |
Msa0076250 | Msa0925180 | 0.811481 | 6.853526e-51 | -8.615850e-47 |
Msa0089630 | Msa0925180 | 0.845700 | 3.447635e-59 | -8.615850e-47 |
Msa0090400 | Msa0925180 | 0.806711 | 7.202810e-50 | -8.615850e-47 |
Msa0092790 | Msa0925180 | 0.805553 | 1.262764e-49 | -8.615850e-47 |
Msa0094140 | Msa0925180 | 0.832821 | 7.594975e-56 | -8.615850e-47 |
Msa0101440 | Msa0925180 | 0.816492 | 5.377487e-52 | -8.615850e-47 |
Msa0101450 | Msa0925180 | 0.810760 | 9.820348e-51 | -8.615850e-47 |
Msa0110970 | Msa0925180 | 0.843372 | 1.459050e-58 | -8.615850e-47 |
Msa0112570 | Msa0925180 | 0.810524 | 1.104294e-50 | -8.615850e-47 |
Msa0120400 | Msa0925180 | 0.823743 | 1.175469e-53 | -8.615850e-47 |
Msa0615710 | Msa0925180 | 0.803490 | 3.399887e-49 | -8.615850e-47 |
Msa0616220 | Msa0925180 | 0.811756 | 5.969660e-51 | -8.615850e-47 |
Msa0626450 | Msa0925180 | 0.809779 | 1.598437e-50 | -8.615850e-47 |
Msa0626490 | Msa0925180 | 0.811885 | 5.597877e-51 | -8.615850e-47 |
Msa0627450 | Msa0925180 | 0.801166 | 1.023341e-48 | -8.615850e-47 |
Msa0639430 | Msa0925180 | 0.826812 | 2.208698e-54 | -8.615850e-47 |
Msa0643080 | Msa0925180 | 0.826804 | 2.218157e-54 | -8.615850e-47 |
Msa0643300 | Msa0925180 | 0.802532 | 5.366302e-49 | -8.615850e-47 |
Msa0657970 | Msa0925180 | 0.800978 | 1.118473e-48 | -8.615850e-47 |
Msa0661790 | Msa0925180 | 0.805152 | 1.532052e-49 | -8.615850e-47 |
Msa0664600 | Msa0925180 | 0.809854 | 1.539959e-50 | -8.615850e-47 |
Msa0669320 | Msa0925180 | 0.829435 | 5.156376e-55 | -8.615850e-47 |
Msa0677410 | Msa0925180 | 0.806934 | 6.461878e-50 | -8.615850e-47 |
Msa0683570 | Msa0925180 | 0.828745 | 7.579250e-55 | -8.615850e-47 |
Msa0703050 | Msa0925180 | 0.806430 | 8.256001e-50 | -8.615850e-47 |
Msa0730430 | Msa0925180 | 0.821932 | 3.103801e-53 | -8.615850e-47 |
Msa0741240 | Msa0925180 | 0.834816 | 2.407840e-56 | -8.615850e-47 |
Msa0754520 | Msa0925180 | 0.823849 | 1.109637e-53 | -8.615850e-47 |
Msa0769180 | Msa0925180 | 0.849639 | 2.841095e-60 | -8.615850e-47 |
Msa0770720 | Msa0925180 | 0.809011 | 2.336640e-50 | -8.615850e-47 |
Msa0785210 | Msa0925180 | 0.800064 | 1.717338e-48 | -8.615850e-47 |
Msa0786500 | Msa0925180 | 0.820330 | 7.262643e-53 | -8.615850e-47 |
Msa0822870 | Msa0925180 | 0.838225 | 3.263493e-57 | -8.615850e-47 |
Msa0828560 | Msa0925180 | 0.833296 | 5.785464e-56 | -8.615850e-47 |
Msa0833220 | Msa0925180 | 0.828534 | 8.524731e-55 | -8.615850e-47 |
Msa0838580 | Msa0925180 | 0.819195 | 1.319073e-52 | -8.615850e-47 |
Msa0124060 | Msa0925180 | 0.848276 | 6.797033e-60 | -8.615850e-47 |
Msa0124280 | Msa0925180 | 0.804487 | 2.110194e-49 | -8.615850e-47 |
Msa0137880 | Msa0925180 | 0.807767 | 4.302653e-50 | -8.615850e-47 |
Msa0139060 | Msa0925180 | 0.806851 | 6.728543e-50 | -8.615850e-47 |
Msa0140780 | Msa0925180 | 0.809980 | 1.446854e-50 | -8.615850e-47 |
Msa0146040 | Msa0925180 | 0.801600 | 8.341847e-49 | -8.615850e-47 |
Msa0146260 | Msa0925180 | 0.801744 | 7.794290e-49 | -8.615850e-47 |
Msa0157290 | Msa0925180 | 0.864591 | 1.089480e-64 | -8.615850e-47 |
Msa0164330 | Msa0925180 | 0.801965 | 7.020604e-49 | -8.615850e-47 |
Msa0166560 | Msa0925180 | 0.801001 | 1.106177e-48 | -8.615850e-47 |
Msa0167520 | Msa0925180 | 0.809330 | 1.995794e-50 | -8.615850e-47 |
Msa0168500 | Msa0925180 | 0.847760 | 9.433347e-60 | -8.615850e-47 |
Msa0197420 | Msa0925180 | 0.815573 | 8.625455e-52 | -8.615850e-47 |
Msa0197930 | Msa0925180 | 0.810339 | 1.210506e-50 | -8.615850e-47 |
Msa0200260 | Msa0925180 | 0.823397 | 1.415941e-53 | -8.615850e-47 |
Msa0211150 | Msa0925180 | 0.821097 | 4.839089e-53 | -8.615850e-47 |
Msa0213280 | Msa0925180 | 0.800667 | 1.294418e-48 | -8.615850e-47 |
Msa0221290 | Msa0925180 | 0.801150 | 1.031290e-48 | -8.615850e-47 |
Msa0225680 | Msa0925180 | 0.802418 | 5.663287e-49 | -8.615850e-47 |
Msa0225760 | Msa0925180 | 0.828530 | 8.540146e-55 | -8.615850e-47 |
Msa0230740 | Msa0925180 | 0.847345 | 1.226108e-59 | -8.615850e-47 |
Msa0230750 | Msa0925180 | 0.831257 | 1.849879e-55 | -8.615850e-47 |
Msa0378720 | Msa0925180 | 0.823430 | 1.391248e-53 | -8.615850e-47 |
Msa0386850 | Msa0925180 | 0.808365 | 3.210375e-50 | -8.615850e-47 |
Msa0392420 | Msa0925180 | 0.820984 | 5.138353e-53 | -8.615850e-47 |
Msa0392460 | Msa0925180 | 0.817386 | 3.388066e-52 | -8.615850e-47 |
Msa0392490 | Msa0925180 | 0.830865 | 2.308509e-55 | -8.615850e-47 |
Msa0392510 | Msa0925180 | 0.836359 | 9.798614e-57 | -8.615850e-47 |
Msa0410650 | Msa0925180 | 0.825296 | 5.063748e-54 | -8.615850e-47 |
Msa0417880 | Msa0925180 | 0.815998 | 6.936443e-52 | -8.615850e-47 |
Msa0422850 | Msa0925180 | 0.814881 | 1.229056e-51 | -8.615850e-47 |
Msa0422930 | Msa0925180 | 0.817190 | 3.750495e-52 | -8.615850e-47 |
Msa0428590 | Msa0925180 | 0.822347 | 2.486794e-53 | -8.615850e-47 |
Msa0440500 | Msa0925180 | 0.801959 | 7.038791e-49 | -8.615850e-47 |
Msa0443310 | Msa0925180 | 0.806842 | 6.760382e-50 | -8.615850e-47 |
Msa0450720 | Msa0925180 | 0.804037 | 2.618407e-49 | -8.615850e-47 |
Msa0464680 | Msa0925180 | 0.815536 | 8.793936e-52 | -8.615850e-47 |
Msa0465910 | Msa0925180 | 0.805177 | 1.513784e-49 | -8.615850e-47 |
Msa0467490 | Msa0925180 | 0.804935 | 1.701406e-49 | -8.615850e-47 |
Msa0474730 | Msa0925180 | 0.800542 | 1.372738e-48 | -8.615850e-47 |
Msa0479170 | Msa0925180 | 0.800490 | 1.406562e-48 | -8.615850e-47 |
Msa0239190 | Msa0925180 | 0.820146 | 8.002993e-53 | -8.615850e-47 |
Msa0243100 | Msa0925180 | 0.829391 | 5.284897e-55 | -8.615850e-47 |
Msa0253700 | Msa0925180 | 0.809196 | 2.132378e-50 | -8.615850e-47 |
Msa0255090 | Msa0925180 | 0.816117 | 6.522960e-52 | -8.615850e-47 |
Msa0259380 | Msa0925180 | 0.817231 | 3.671515e-52 | -8.615850e-47 |
Msa0260610 | Msa0925180 | 0.820472 | 6.736776e-53 | -8.615850e-47 |
Msa0260670 | Msa0925180 | 0.823362 | 1.442623e-53 | -8.615850e-47 |
Msa0261340 | Msa0925180 | 0.866282 | 3.195245e-65 | -8.615850e-47 |
Msa0267110 | Msa0925180 | 0.809446 | 1.884913e-50 | -8.615850e-47 |
Msa0277180 | Msa0925180 | 0.816722 | 4.777003e-52 | -8.615850e-47 |
Msa0287650 | Msa0925180 | 0.817047 | 4.038097e-52 | -8.615850e-47 |
Msa0291540 | Msa0925180 | 0.812549 | 4.008543e-51 | -8.615850e-47 |
Msa0292400 | Msa0925180 | 0.856209 | 3.755948e-62 | -8.615850e-47 |
Msa0300690 | Msa0925180 | 0.802921 | 4.459221e-49 | -8.615850e-47 |
Msa0302170 | Msa0925180 | 0.813353 | 2.672138e-51 | -8.615850e-47 |
Msa0311280 | Msa0925180 | 0.805256 | 1.457711e-49 | -8.615850e-47 |
Msa0316810 | Msa0925180 | 0.814492 | 1.498812e-51 | -8.615850e-47 |
Msa0338510 | Msa0925180 | 0.827427 | 1.574206e-54 | -8.615850e-47 |
Msa0344570 | Msa0925180 | 0.817046 | 4.040432e-52 | -8.615850e-47 |
Msa0348880 | Msa0925180 | 0.804075 | 2.570213e-49 | -8.615850e-47 |
Msa0351110 | Msa0925180 | 0.807855 | 4.122666e-50 | -8.615850e-47 |
Msa0357340 | Msa0925180 | 0.805090 | 1.579037e-49 | -8.615850e-47 |
Msa0363070 | Msa0925180 | 0.851995 | 6.169283e-61 | -8.615850e-47 |
Msa0363200 | Msa0925180 | 0.818877 | 1.558669e-52 | -8.615850e-47 |
Msa0487570 | Msa0925180 | 0.826012 | 3.425628e-54 | -8.615850e-47 |
Msa0487630 | Msa0925180 | 0.839623 | 1.418780e-57 | -8.615850e-47 |
Msa0490390 | Msa0925180 | 0.818470 | 1.927992e-52 | -8.615850e-47 |
Msa0498060 | Msa0925180 | 0.820942 | 5.254613e-53 | -8.615850e-47 |
Msa0507680 | Msa0925180 | 0.824510 | 7.761724e-54 | -8.615850e-47 |
Msa0524190 | Msa0925180 | 0.821338 | 4.258803e-53 | -8.615850e-47 |
Msa0532070 | Msa0925180 | 0.812161 | 4.871845e-51 | -8.615850e-47 |
Msa0535040 | Msa0925180 | 0.836403 | 9.552022e-57 | -8.615850e-47 |
Msa0569200 | Msa0925180 | 0.831700 | 1.438380e-55 | -8.615850e-47 |
Msa0574890 | Msa0925180 | 0.824402 | 8.232030e-54 | -8.615850e-47 |
Msa0576880 | Msa0925180 | 0.805900 | 1.067869e-49 | -8.615850e-47 |
Msa0602240 | Msa0925180 | 0.827669 | 1.376653e-54 | -8.615850e-47 |
Msa0602250 | Msa0925180 | 0.828696 | 7.789096e-55 | -8.615850e-47 |
Msa0861510 | Msa0925180 | 0.807070 | 6.048464e-50 | -8.615850e-47 |
Msa0861600 | Msa0925180 | 0.807781 | 4.274453e-50 | -8.615850e-47 |
Msa0861870 | Msa0925180 | 0.841591 | 4.330341e-58 | -8.615850e-47 |
Msa0870550 | Msa0925180 | 0.800251 | 1.573180e-48 | -8.615850e-47 |
Msa0875290 | Msa0925180 | 0.808872 | 2.501356e-50 | -8.615850e-47 |
Msa0876190 | Msa0925180 | 0.806222 | 9.135975e-50 | -8.615850e-47 |
Msa0880140 | Msa0925180 | 0.860759 | 1.650996e-63 | -8.615850e-47 |
Msa0890320 | Msa0925180 | 0.854683 | 1.045302e-61 | -8.615850e-47 |
Msa0896540 | Msa0925180 | 0.833555 | 4.985614e-56 | -8.615850e-47 |
Msa0896970 | Msa0925180 | 0.800808 | 1.211244e-48 | -8.615850e-47 |
Msa0906130 | Msa0925180 | 0.800603 | 1.333865e-48 | -8.615850e-47 |
Msa0925180 | Msa0930780 | 0.801883 | 7.295990e-49 | -8.615850e-47 |
Msa0925180 | Msa0936410 | 0.808087 | 3.678435e-50 | -8.615850e-47 |
Msa0925180 | Msa0945110 | 0.838348 | 3.033776e-57 | -8.615850e-47 |
Msa0925180 | Msa0947660 | 0.804392 | 2.208672e-49 | -8.615850e-47 |
Msa0925180 | Msa0948290 | 0.805864 | 1.086257e-49 | -8.615850e-47 |
Msa0925180 | Msa0955080 | 0.866112 | 3.618499e-65 | -8.615850e-47 |
Msa0925180 | Msa0967380 | 0.815410 | 9.379667e-52 | -8.615850e-47 |
Msa0925180 | Msa0967870 | 0.804448 | 2.149432e-49 | -8.615850e-47 |
Msa0925180 | Msa0969200 | 0.802242 | 6.156260e-49 | -8.615850e-47 |
Msa0925180 | Msa0973250 | 0.801839 | 7.450202e-49 | -8.615850e-47 |
Msa0925180 | Msa0990540 | 0.919700 | 3.243787e-87 | -8.615850e-47 |
Msa0925180 | Msa1005870 | 0.817190 | 3.749771e-52 | -8.615850e-47 |
Msa0925180 | Msa1019000 | 0.817454 | 3.269740e-52 | -8.615850e-47 |
Msa0925180 | Msa1019430 | 0.834657 | 2.641189e-56 | -8.615850e-47 |
Msa0925180 | Msa1019470 | 0.839002 | 2.055871e-57 | -8.615850e-47 |
Msa0925180 | Msa1020670 | 0.811378 | 7.215384e-51 | -8.615850e-47 |
Msa0925180 | Msa1041900 | 0.814966 | 1.177080e-51 | -8.615850e-47 |
Msa0925180 | Msa1043370 | 0.821764 | 3.394237e-53 | -8.615850e-47 |
Msa0925180 | Msa1045140 | 0.846810 | 1.718847e-59 | -8.615850e-47 |
Msa0925180 | Msa1051830 | 0.821302 | 4.339202e-53 | -8.615850e-47 |
Msa0925180 | Msa1080240 | 0.800671 | 1.291756e-48 | -8.615850e-47 |
Msa0925180 | Msa1085200 | 0.822222 | 2.658910e-53 | -8.615850e-47 |
Msa0925180 | Msa1092010 | 0.815250 | 1.017696e-51 | -8.615850e-47 |
Msa0925180 | Msa1096970 | 0.801626 | 8.238513e-49 | -8.615850e-47 |
Msa0925180 | Msa1108160 | 0.801222 | 9.968254e-49 | -8.615850e-47 |
Msa0925180 | Msa1125000 | 0.849268 | 3.607003e-60 | -8.615850e-47 |
Msa0925180 | Msa1140210 | 0.835903 | 1.279454e-56 | -8.615850e-47 |
Msa0925180 | Msa1151910 | 0.816624 | 5.024364e-52 | -8.615850e-47 |
Msa0925180 | Msa1183120 | 0.811949 | 5.419761e-51 | -8.615850e-47 |
Msa0925180 | Msa1190400 | 0.814305 | 1.648768e-51 | -8.615850e-47 |
Msa0925180 | Msa1196440 | 0.804632 | 1.968045e-49 | -8.615850e-47 |
Msa0925180 | Msa1209460 | 0.833876 | 4.146124e-56 | -8.615850e-47 |
Msa0925180 | Msa1222850 | 0.800913 | 1.152932e-48 | -8.615850e-47 |
Msa0925180 | Msa1223470 | 0.809665 | 1.691415e-50 | -8.615850e-47 |
Msa0925180 | Msa1225250 | 0.801706 | 7.935458e-49 | -8.615850e-47 |
Msa0925180 | Msa1229500 | 0.820448 | 6.821369e-53 | -8.615850e-47 |
Msa0925180 | Msa1236410 | 0.814382 | 1.585569e-51 | -8.615850e-47 |
Msa0925180 | Msa1242230 | 0.804097 | 2.544435e-49 | -8.615850e-47 |
Msa0925180 | Msa1242240 | 0.814247 | 1.697664e-51 | -8.615850e-47 |
Msa0925180 | Msa1252140 | 0.828368 | 9.344628e-55 | -8.615850e-47 |
Msa0925180 | Msa1267220 | 0.806716 | 7.184630e-50 | -8.615850e-47 |
Msa0925180 | Msa1269480 | 0.813997 | 1.927956e-51 | -8.615850e-47 |
Msa0925180 | Msa1271990 | 0.830658 | 2.593994e-55 | -8.615850e-47 |
Msa0925180 | Msa1272900 | 0.800247 | 1.576231e-48 | -8.615850e-47 |
Msa0925180 | Msa1283840 | 0.803749 | 3.005342e-49 | -8.615850e-47 |
Msa0925180 | Msa1284260 | 0.818132 | 2.298812e-52 | -8.615850e-47 |
Msa0925180 | Msa1293730 | 0.804577 | 2.021162e-49 | -8.615850e-47 |
Msa0925180 | Msa1302830 | 0.818670 | 1.736126e-52 | -8.615850e-47 |
Msa0925180 | Msa1322860 | 0.800211 | 1.602817e-48 | -8.615850e-47 |
Msa0925180 | Msa1324500 | 0.825807 | 3.832151e-54 | -8.615850e-47 |
Msa0925180 | Msa1327050 | 0.807095 | 5.975090e-50 | -8.615850e-47 |
Msa0925180 | Msa1330410 | 0.809097 | 2.239471e-50 | -8.615850e-47 |
Msa0925180 | Msa1332070 | 0.805562 | 1.257039e-49 | -8.615850e-47 |
Msa0925180 | Msa1346370 | 0.807705 | 4.435480e-50 | -8.615850e-47 |
Msa0925180 | Msa1357240 | 0.815758 | 7.844993e-52 | -8.615850e-47 |
Msa0925180 | Msa1365060 | 0.808584 | 2.882185e-50 | -8.615850e-47 |
Msa0925180 | Msa1367370 | 0.818786 | 1.634454e-52 | -8.615850e-47 |
Msa0925180 | Msa1372230 | 0.817525 | 3.152427e-52 | -8.615850e-47 |
Msa0925180 | Msa1372760 | 0.805306 | 1.422835e-49 | -8.615850e-47 |
Msa0925180 | Msa1374550 | 0.857670 | 1.393222e-62 | -8.615850e-47 |
Msa0925180 | Msa1377760 | 0.800726 | 1.259055e-48 | -8.615850e-47 |
Msa0925180 | Msa1387870 | 0.812794 | 3.543060e-51 | -8.615850e-47 |
Msa0925180 | Msa1387880 | 0.801795 | 7.608437e-49 | -8.615850e-47 |
Msa0925180 | Msa1392820 | 0.801899 | 7.243557e-49 | -8.615850e-47 |
Msa0925180 | Msa1417420 | 0.801242 | 9.874031e-49 | -8.615850e-47 |
Msa0925180 | Msa1419370 | 0.814345 | 1.615324e-51 | -8.615850e-47 |
Msa0925180 | Msa1438250 | 0.809759 | 1.614286e-50 | -8.615850e-47 |
Msa0925180 | Msa1443110 | 0.818122 | 2.311045e-52 | -8.615850e-47 |
Msa0925180 | Msa1446810 | 0.801796 | 7.604192e-49 | -8.615850e-47 |
Msa0925180 | Msa1461300 | 0.810170 | 1.316930e-50 | -8.615850e-47 |
Msa0925180 | Msa1464810 | 0.816334 | 5.835340e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0925180 | MtrunA17_Chr6g0471231 | 99.286 | 140 | 1 | 0 | 1 | 140 | 1 | 140 | 5.48e-104 | 293 |
Msa0925180 | MtrunA17_Chr2g0325601 | 39.597 | 149 | 69 | 8 | 4 | 140 | 3 | 142 | 4.14e-25 | 93.2 |
Msa0925180 | MtrunA17_Chr3g0124411 | 38.235 | 136 | 69 | 4 | 5 | 140 | 32 | 152 | 1.83e-22 | 86.7 |
Msa0925180 | MtrunA17_Chr3g0145621 | 35.664 | 143 | 71 | 6 | 5 | 140 | 28 | 156 | 3.74e-22 | 86.3 |
Msa0925180 | MtrunA17_Chr1g0160201 | 36.029 | 136 | 72 | 5 | 5 | 140 | 27 | 147 | 5.90e-22 | 85.5 |
Msa0925180 | MtrunA17_Chr3g0115421 | 37.405 | 131 | 67 | 4 | 11 | 140 | 33 | 149 | 6.83e-22 | 85.1 |
Msa0925180 | MtrunA17_Chr5g0405811 | 38.028 | 142 | 71 | 6 | 3 | 140 | 29 | 157 | 8.78e-22 | 85.1 |
Msa0925180 | MtrunA17_Chr4g0036931 | 37.589 | 141 | 73 | 4 | 3 | 140 | 28 | 156 | 2.49e-21 | 84.0 |
Msa0925180 | MtrunA17_Chr8g0382721 | 36.957 | 138 | 70 | 5 | 5 | 140 | 31 | 153 | 6.16e-21 | 82.8 |
Msa0925180 | MtrunA17_Chr5g0407821 | 34.058 | 138 | 72 | 6 | 5 | 140 | 25 | 145 | 5.29e-20 | 80.1 |
Msa0925180 | MtrunA17_Chr1g0189221 | 42.391 | 92 | 43 | 3 | 5 | 96 | 55 | 136 | 7.33e-18 | 75.5 |
Msa0925180 | MtrunA17_Chr6g0448861 | 35.461 | 141 | 69 | 7 | 5 | 140 | 32 | 155 | 3.09e-17 | 73.2 |
Msa0925180 | MtrunA17_Chr7g0251491 | 31.655 | 139 | 74 | 7 | 5 | 140 | 50 | 170 | 5.58e-16 | 70.5 |
Msa0925180 | MtrunA17_Chr6g0460361 | 39.474 | 114 | 59 | 7 | 30 | 140 | 4 | 110 | 1.49e-13 | 62.8 |
Msa0925180 | MtrunA17_Chr5g0422891 | 29.412 | 136 | 81 | 5 | 5 | 140 | 27 | 147 | 7.19e-13 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0925180 | AT3G48970.1 | 75.714 | 140 | 34 | 0 | 1 | 140 | 1 | 140 | 3.95e-66 | 197 |
Msa0925180 | AT3G48970.2 | 76.471 | 136 | 32 | 0 | 5 | 140 | 3 | 138 | 6.98e-65 | 194 |
Msa0925180 | AT3G48970.3 | 76.471 | 136 | 32 | 0 | 5 | 140 | 3 | 138 | 6.98e-65 | 194 |
Msa0925180 | AT3G56891.1 | 36.364 | 154 | 79 | 4 | 3 | 140 | 16 | 166 | 4.43e-28 | 102 |
Msa0925180 | AT3G56891.2 | 36.552 | 145 | 74 | 3 | 12 | 140 | 1 | 143 | 8.50e-28 | 100 |
Msa0925180 | AT4G08570.1 | 40.876 | 137 | 66 | 5 | 5 | 140 | 28 | 150 | 1.04e-24 | 92.8 |
Msa0925180 | AT2G18196.2 | 37.879 | 132 | 68 | 4 | 14 | 140 | 3 | 125 | 8.22e-24 | 89.7 |
Msa0925180 | AT2G18196.1 | 37.879 | 132 | 68 | 4 | 14 | 140 | 56 | 178 | 4.80e-23 | 89.4 |
Msa0925180 | AT1G06330.1 | 37.342 | 158 | 66 | 9 | 5 | 140 | 4 | 150 | 6.18e-23 | 88.2 |
Msa0925180 | AT1G71050.1 | 37.984 | 129 | 68 | 3 | 12 | 140 | 36 | 152 | 2.76e-22 | 86.7 |
Msa0925180 | AT5G66110.3 | 37.857 | 140 | 70 | 5 | 5 | 140 | 21 | 147 | 1.39e-20 | 82.0 |
Msa0925180 | AT5G66110.1 | 37.857 | 140 | 70 | 5 | 5 | 140 | 21 | 147 | 1.39e-20 | 82.0 |
Msa0925180 | AT5G66110.2 | 37.594 | 133 | 67 | 4 | 12 | 140 | 1 | 121 | 3.05e-20 | 80.5 |
Msa0925180 | AT4G35060.1 | 37.324 | 142 | 72 | 5 | 3 | 140 | 25 | 153 | 4.60e-20 | 80.9 |
Msa0925180 | AT4G10465.1 | 37.410 | 139 | 76 | 5 | 5 | 140 | 53 | 183 | 1.04e-19 | 80.9 |
Msa0925180 | AT1G22990.1 | 37.226 | 137 | 70 | 7 | 5 | 140 | 31 | 152 | 1.50e-19 | 79.7 |
Msa0925180 | AT1G22990.2 | 37.692 | 130 | 66 | 6 | 12 | 140 | 32 | 147 | 2.06e-19 | 79.0 |
Msa0925180 | AT4G39700.1 | 38.849 | 139 | 68 | 5 | 5 | 140 | 34 | 158 | 5.91e-19 | 78.2 |
Msa0925180 | AT4G38580.1 | 32.857 | 140 | 80 | 3 | 3 | 140 | 26 | 153 | 3.36e-18 | 76.3 |
Msa0925180 | AT4G38580.2 | 32.857 | 140 | 80 | 3 | 3 | 140 | 26 | 153 | 3.36e-18 | 76.3 |
Msa0925180 | AT5G17450.1 | 35.766 | 137 | 72 | 6 | 5 | 140 | 28 | 149 | 9.45e-18 | 74.7 |
Msa0925180 | AT1G29100.2 | 33.333 | 153 | 83 | 7 | 1 | 140 | 1 | 147 | 1.93e-16 | 71.6 |
Msa0925180 | AT1G29100.1 | 32.653 | 147 | 80 | 7 | 7 | 140 | 1 | 141 | 5.04e-14 | 65.1 |
Msa0925180 | AT5G17450.2 | 37.500 | 112 | 55 | 5 | 30 | 140 | 8 | 105 | 8.99e-13 | 60.8 |
Find 41 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTACCAATAACTGTTTAAA+AGG | 0.123298 | 6_2:-67976101 | Msa0925180:five_prime_UTR |
AAAGCTCTCTTCAAACTTAA+AGG | 0.212136 | 6_2:-67975740 | Msa0925180:intron |
GAAGGAGTATGCCTCAAATA+TGG | 0.262354 | 6_2:-67976192 | Msa0925180:five_prime_UTR |
ACAGACATTATTGCTTGTTT+AGG | 0.316520 | 6_2:+67975934 | None:intergenic |
CACCCTTCACAATCAAGATT+TGG | 0.359814 | 6_2:+67975779 | None:intergenic |
AGATGATGTAGAAGTTGAAA+TGG | 0.361767 | 6_2:-67974624 | Msa0925180:CDS |
AAAATGAAGCAAAATGAGTA+TGG | 0.404963 | 6_2:+67974495 | None:intergenic |
AAGGAGTATGCCTCAAATAT+GGG | 0.432186 | 6_2:-67976191 | Msa0925180:five_prime_UTR |
TGAGTATGGCCAGGTAGAAA+TGG | 0.434741 | 6_2:+67974509 | None:intergenic |
GTTGTGGTGTGGTCACTGTT+TGG | 0.436064 | 6_2:+67976023 | None:intergenic |
GAACAAAGTGTCGTTGTTGT+TGG | 0.437407 | 6_2:+67976050 | None:intergenic |
CTACTAAAGTGTTCTTTGAA+AGG | 0.459973 | 6_2:+67976076 | None:intergenic |
TACAAAAGTGAAGCAACAAA+TGG | 0.472564 | 6_2:-67974428 | Msa0925180:CDS |
GTACCAATAACTGTTTAAAA+GGG | 0.475755 | 6_2:-67976100 | Msa0925180:five_prime_UTR |
AAGATAACAGTCAGAGGCTA+TGG | 0.503785 | 6_2:-67974593 | Msa0925180:CDS |
TTGAAAGCAATCAAACGTGC+AGG | 0.508044 | 6_2:-67974551 | Msa0925180:CDS |
TAATGATTAACAATGTAACT+TGG | 0.510139 | 6_2:+67974464 | None:intergenic |
AACACTTCATAAGATTTCCC+TGG | 0.533065 | 6_2:+67974194 | None:intergenic |
TACATTATAGTGCAAGCATG+AGG | 0.547669 | 6_2:+67974317 | None:intergenic |
AGTTGCTGTTGCATCTGATG+AGG | 0.552668 | 6_2:-67974369 | Msa0925180:CDS |
ATTGTTGTAGAATATGGTTG+AGG | 0.553241 | 6_2:-67975810 | Msa0925180:intron |
GAAGCAAAATGAGTATGGCC+AGG | 0.561335 | 6_2:+67974500 | None:intergenic |
GAACCATGGCCATTTCTACC+TGG | 0.561424 | 6_2:-67974518 | Msa0925180:CDS |
AAGAGAGTTGTGTTCTGTTG+TGG | 0.568287 | 6_2:+67976007 | None:intergenic |
GAAGAGGTGAAAGTTGAGTG+AGG | 0.589555 | 6_2:-67974232 | Msa0925180:three_prime_UTR |
AGGAGTATGCCTCAAATATG+GGG | 0.603014 | 6_2:-67976190 | Msa0925180:five_prime_UTR |
CATAATGAGAGACAAGGTGA+AGG | 0.610425 | 6_2:-67976210 | Msa0925180:five_prime_UTR |
CAGGGAAAGCAGCAGAACCA+TGG | 0.611728 | 6_2:-67974532 | Msa0925180:CDS |
CAGCAACTGAATAAACAGAA+GGG | 0.615737 | 6_2:+67974384 | None:intergenic |
TGATGTAGAAGTTGAAATGG+AGG | 0.626665 | 6_2:-67974621 | Msa0925180:CDS |
AGCAACTGAATAAACAGAAG+GGG | 0.630032 | 6_2:+67974385 | None:intergenic |
ACAGCAACTGAATAAACAGA+AGG | 0.630530 | 6_2:+67974383 | None:intergenic |
AGTTGTGTTCTGTTGTGGTG+TGG | 0.634601 | 6_2:+67976012 | None:intergenic |
GTGCCAAATCTTGATTGTGA+AGG | 0.640152 | 6_2:-67975782 | Msa0925180:CDS |
TGGCCAGGTAGAAATGGCCA+TGG | 0.640241 | 6_2:+67974515 | None:intergenic |
TGCCAAATCTTGATTGTGAA+GGG | 0.643692 | 6_2:-67975781 | Msa0925180:CDS |
ACATTATAGTGCAAGCATGA+GGG | 0.647161 | 6_2:+67974318 | None:intergenic |
TGAAAGCAATCAAACGTGCA+GGG | 0.647389 | 6_2:-67974550 | Msa0925180:CDS |
GCACAAAAGATAACAGTCAG+AGG | 0.657965 | 6_2:-67974599 | Msa0925180:CDS |
ATGAGACATAATGAGAGACA+AGG | 0.689159 | 6_2:-67976216 | Msa0925180:five_prime_UTR |
GGAGTATGCCTCAAATATGG+GGG | 0.690405 | 6_2:-67976189 | Msa0925180:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTATTTATAATAGTGAT+CGG | + | chr6_2:67975397-67975416 | None:intergenic | 10.0% |
!! | TTGTTTATTGAATTTAAAAA+TGG | - | chr6_2:67975481-67975500 | Msa0925180:intron | 10.0% |
!!! | AATTTAAAACTTTCTTTTTT+GGG | + | chr6_2:67975566-67975585 | None:intergenic | 10.0% |
!!! | TTTTTATTTATAATAGTGAT+CGG | + | chr6_2:67975397-67975416 | None:intergenic | 10.0% |
!! | TTGTTTATTGAATTTAAAAA+TGG | - | chr6_2:67975481-67975500 | Msa0925180:intron | 10.0% |
!!! | AATTTAAAACTTTCTTTTTT+GGG | + | chr6_2:67975566-67975585 | None:intergenic | 10.0% |
!! | AATAGTTGATTAGAATAATT+TGG | + | chr6_2:67975192-67975211 | None:intergenic | 15.0% |
!! | TCATTGTCTTAAATTATTAA+TGG | - | chr6_2:67975334-67975353 | Msa0925180:intron | 15.0% |
!!! | CAATTTAAAACTTTCTTTTT+TGG | + | chr6_2:67975567-67975586 | None:intergenic | 15.0% |
!!! | AGAAAGTTTTAAATTGAAAA+AGG | - | chr6_2:67975571-67975590 | Msa0925180:intron | 15.0% |
!! | AATAGTTGATTAGAATAATT+TGG | + | chr6_2:67975192-67975211 | None:intergenic | 15.0% |
!! | TCATTGTCTTAAATTATTAA+TGG | - | chr6_2:67975334-67975353 | Msa0925180:intron | 15.0% |
!!! | CAATTTAAAACTTTCTTTTT+TGG | + | chr6_2:67975567-67975586 | None:intergenic | 15.0% |
!!! | AGAAAGTTTTAAATTGAAAA+AGG | - | chr6_2:67975571-67975590 | Msa0925180:intron | 15.0% |
!!! | TAAACATATTTTGAACCTTA+GGG | + | chr6_2:67974501-67974520 | None:intergenic | 20.0% |
!!! | ATAAACATATTTTGAACCTT+AGG | + | chr6_2:67974502-67974521 | None:intergenic | 20.0% |
!! | GATTAAATTATGACTAATGT+TGG | - | chr6_2:67974539-67974558 | Msa0925180:CDS | 20.0% |
!! | GAATATATTGTTGTAGAATA+TGG | - | chr6_2:67974571-67974590 | Msa0925180:CDS | 20.0% |
!!! | TTCATATAACATCTTTTGTT+CGG | - | chr6_2:67974889-67974908 | Msa0925180:intron | 20.0% |
!! | TTTGTACATATGAAGTAATT+TGG | - | chr6_2:67974960-67974979 | Msa0925180:intron | 20.0% |
!! | TTGTACATATGAAGTAATTT+GGG | - | chr6_2:67974961-67974980 | Msa0925180:intron | 20.0% |
!!! | TAAAAAAAAGCATGTGATTT+TGG | + | chr6_2:67975003-67975022 | None:intergenic | 20.0% |
!!! | AAATCACATGCTTTTTTTTA+AGG | - | chr6_2:67975003-67975022 | Msa0925180:intron | 20.0% |
!!! | ATCAACTATTCATTTGTTTT+TGG | - | chr6_2:67975202-67975221 | Msa0925180:intron | 20.0% |
!! | AATGTAATGCATACTATATT+TGG | - | chr6_2:67975633-67975652 | Msa0925180:intron | 20.0% |
!! | TAATGATTAACAATGTAACT+TGG | + | chr6_2:67975926-67975945 | None:intergenic | 20.0% |
!!! | TAAACATATTTTGAACCTTA+GGG | + | chr6_2:67974501-67974520 | None:intergenic | 20.0% |
!!! | ATAAACATATTTTGAACCTT+AGG | + | chr6_2:67974502-67974521 | None:intergenic | 20.0% |
!! | GATTAAATTATGACTAATGT+TGG | - | chr6_2:67974539-67974558 | Msa0925180:CDS | 20.0% |
!! | GAATATATTGTTGTAGAATA+TGG | - | chr6_2:67974571-67974590 | Msa0925180:CDS | 20.0% |
!!! | TTCATATAACATCTTTTGTT+CGG | - | chr6_2:67974889-67974908 | Msa0925180:intron | 20.0% |
!! | TTTGTACATATGAAGTAATT+TGG | - | chr6_2:67974960-67974979 | Msa0925180:intron | 20.0% |
!! | TTGTACATATGAAGTAATTT+GGG | - | chr6_2:67974961-67974980 | Msa0925180:intron | 20.0% |
!!! | TAAAAAAAAGCATGTGATTT+TGG | + | chr6_2:67975003-67975022 | None:intergenic | 20.0% |
!!! | AAATCACATGCTTTTTTTTA+AGG | - | chr6_2:67975003-67975022 | Msa0925180:intron | 20.0% |
!!! | ATCAACTATTCATTTGTTTT+TGG | - | chr6_2:67975202-67975221 | Msa0925180:intron | 20.0% |
!! | AATGTAATGCATACTATATT+TGG | - | chr6_2:67975633-67975652 | Msa0925180:intron | 20.0% |
!! | TAATGATTAACAATGTAACT+TGG | + | chr6_2:67975926-67975945 | None:intergenic | 20.0% |
!! | AAAAAAAGGTTGTTGTGTTT+TGG | + | chr6_2:67974267-67974286 | None:intergenic | 25.0% |
! | ACAGTTATTGGTACAAAAAA+AGG | + | chr6_2:67974281-67974300 | None:intergenic | 25.0% |
! | TGTACCAATAACTGTTTAAA+AGG | - | chr6_2:67974286-67974305 | Msa0925180:three_prime_UTR | 25.0% |
! | GTACCAATAACTGTTTAAAA+GGG | - | chr6_2:67974287-67974306 | Msa0925180:three_prime_UTR | 25.0% |
!!! | TGTTTATGTCTTTTAAGAGT+TGG | - | chr6_2:67974515-67974534 | Msa0925180:CDS | 25.0% |
!! | GAAAATTGCTATGTGATTTT+GGG | + | chr6_2:67974821-67974840 | None:intergenic | 25.0% |
!! | AGAAAATTGCTATGTGATTT+TGG | + | chr6_2:67974822-67974841 | None:intergenic | 25.0% |
! | GTGATATTTAAGAAATGAGA+GGG | + | chr6_2:67974848-67974867 | None:intergenic | 25.0% |
! | TGTGATATTTAAGAAATGAG+AGG | + | chr6_2:67974849-67974868 | None:intergenic | 25.0% |
! | TGTACATATGAAGTAATTTG+GGG | - | chr6_2:67974962-67974981 | Msa0925180:intron | 25.0% |
!! | TTCAAAATGAATGTCGTTTA+AGG | - | chr6_2:67975128-67975147 | Msa0925180:intron | 25.0% |
!! | TTTTGTCTAACTTCTATGTT+TGG | - | chr6_2:67975293-67975312 | Msa0925180:intron | 25.0% |
!! | AACTTCTATGTTTGGAATTA+TGG | - | chr6_2:67975301-67975320 | Msa0925180:intron | 25.0% |
! | CGGTTCACTATTATAAAAAA+AGG | + | chr6_2:67975703-67975722 | None:intergenic | 25.0% |
!! | CAAAAATCAGTTACTTTACT+CGG | + | chr6_2:67975723-67975742 | None:intergenic | 25.0% |
!!! | TTTTTGATTGCCTGATTTAT+AGG | - | chr6_2:67975737-67975756 | Msa0925180:intron | 25.0% |
! | AAAATGAAGCAAAATGAGTA+TGG | + | chr6_2:67975895-67975914 | None:intergenic | 25.0% |
!!! | TTTTTGAAATGAAGATGAAG+AGG | - | chr6_2:67976139-67976158 | Msa0925180:five_prime_UTR | 25.0% |
!! | AGTGTTTTGTGTTTGTTTAT+TGG | - | chr6_2:67976210-67976229 | Msa0925180:five_prime_UTR | 25.0% |
!! | AAAAAAAGGTTGTTGTGTTT+TGG | + | chr6_2:67974267-67974286 | None:intergenic | 25.0% |
! | ACAGTTATTGGTACAAAAAA+AGG | + | chr6_2:67974281-67974300 | None:intergenic | 25.0% |
! | TGTACCAATAACTGTTTAAA+AGG | - | chr6_2:67974286-67974305 | Msa0925180:three_prime_UTR | 25.0% |
! | GTACCAATAACTGTTTAAAA+GGG | - | chr6_2:67974287-67974306 | Msa0925180:three_prime_UTR | 25.0% |
!!! | TGTTTATGTCTTTTAAGAGT+TGG | - | chr6_2:67974515-67974534 | Msa0925180:CDS | 25.0% |
!! | GAAAATTGCTATGTGATTTT+GGG | + | chr6_2:67974821-67974840 | None:intergenic | 25.0% |
!! | AGAAAATTGCTATGTGATTT+TGG | + | chr6_2:67974822-67974841 | None:intergenic | 25.0% |
! | GTGATATTTAAGAAATGAGA+GGG | + | chr6_2:67974848-67974867 | None:intergenic | 25.0% |
! | TGTGATATTTAAGAAATGAG+AGG | + | chr6_2:67974849-67974868 | None:intergenic | 25.0% |
! | TGTACATATGAAGTAATTTG+GGG | - | chr6_2:67974962-67974981 | Msa0925180:intron | 25.0% |
!! | TTCAAAATGAATGTCGTTTA+AGG | - | chr6_2:67975128-67975147 | Msa0925180:intron | 25.0% |
!! | TTTTGTCTAACTTCTATGTT+TGG | - | chr6_2:67975293-67975312 | Msa0925180:intron | 25.0% |
!! | AACTTCTATGTTTGGAATTA+TGG | - | chr6_2:67975301-67975320 | Msa0925180:intron | 25.0% |
! | CGGTTCACTATTATAAAAAA+AGG | + | chr6_2:67975703-67975722 | None:intergenic | 25.0% |
!! | CAAAAATCAGTTACTTTACT+CGG | + | chr6_2:67975723-67975742 | None:intergenic | 25.0% |
!!! | TTTTTGATTGCCTGATTTAT+AGG | - | chr6_2:67975737-67975756 | Msa0925180:intron | 25.0% |
! | AAAATGAAGCAAAATGAGTA+TGG | + | chr6_2:67975895-67975914 | None:intergenic | 25.0% |
!!! | TTTTTGAAATGAAGATGAAG+AGG | - | chr6_2:67976139-67976158 | Msa0925180:five_prime_UTR | 25.0% |
!! | AGTGTTTTGTGTTTGTTTAT+TGG | - | chr6_2:67976210-67976229 | Msa0925180:five_prime_UTR | 25.0% |
! | CTACTAAAGTGTTCTTTGAA+AGG | + | chr6_2:67974314-67974333 | None:intergenic | 30.0% |
ACAGACATTATTGCTTGTTT+AGG | + | chr6_2:67974456-67974475 | None:intergenic | 30.0% | |
ATTGTTGTAGAATATGGTTG+AGG | - | chr6_2:67974577-67974596 | Msa0925180:CDS | 30.0% | |
AAAGCTCTCTTCAAACTTAA+AGG | - | chr6_2:67974647-67974666 | Msa0925180:intron | 30.0% | |
! | TTGTACCCTTTAATTTCTTG+TGG | - | chr6_2:67974723-67974742 | Msa0925180:intron | 30.0% |
CATTGCCACAAGAAATTAAA+GGG | + | chr6_2:67974731-67974750 | None:intergenic | 30.0% | |
TCATTGCCACAAGAAATTAA+AGG | + | chr6_2:67974732-67974751 | None:intergenic | 30.0% | |
TAATTTCTTGTGGCAATGAA+TGG | - | chr6_2:67974733-67974752 | Msa0925180:intron | 30.0% | |
ATATTTAAGAAATGAGAGGG+TGG | + | chr6_2:67974845-67974864 | None:intergenic | 30.0% | |
ATCTCGAAGAAGAAAAAACA+CGG | + | chr6_2:67974941-67974960 | None:intergenic | 30.0% | |
GTACATATGAAGTAATTTGG+GGG | - | chr6_2:67974963-67974982 | Msa0925180:intron | 30.0% | |
! | TTTTAATGGTAACTCACTCA+GGG | + | chr6_2:67975053-67975072 | None:intergenic | 30.0% |
! | AAGCAACACTTGACTTTTAA+TGG | + | chr6_2:67975067-67975086 | None:intergenic | 30.0% |
!!! | ATTCATTTTGAAACTGAGAG+AGG | + | chr6_2:67975120-67975139 | None:intergenic | 30.0% |
! | ATGGTTAACATTTCCCTTTT+TGG | - | chr6_2:67975500-67975519 | Msa0925180:intron | 30.0% |
! | TGGTTAACATTTCCCTTTTT+GGG | - | chr6_2:67975501-67975520 | Msa0925180:intron | 30.0% |
!!! | GGCACTTTATTGACTTTTAA+AGG | - | chr6_2:67975592-67975611 | Msa0925180:intron | 30.0% |
ATCATCTACTCCTATAAATC+AGG | + | chr6_2:67975750-67975769 | None:intergenic | 30.0% | |
AGATGATGTAGAAGTTGAAA+TGG | - | chr6_2:67975763-67975782 | Msa0925180:CDS | 30.0% | |
TACAAAAGTGAAGCAACAAA+TGG | - | chr6_2:67975959-67975978 | Msa0925180:five_prime_UTR | 30.0% | |
! | CTACTAAAGTGTTCTTTGAA+AGG | + | chr6_2:67974314-67974333 | None:intergenic | 30.0% |
ACAGACATTATTGCTTGTTT+AGG | + | chr6_2:67974456-67974475 | None:intergenic | 30.0% | |
ATTGTTGTAGAATATGGTTG+AGG | - | chr6_2:67974577-67974596 | Msa0925180:CDS | 30.0% | |
AAAGCTCTCTTCAAACTTAA+AGG | - | chr6_2:67974647-67974666 | Msa0925180:intron | 30.0% | |
! | TTGTACCCTTTAATTTCTTG+TGG | - | chr6_2:67974723-67974742 | Msa0925180:intron | 30.0% |
CATTGCCACAAGAAATTAAA+GGG | + | chr6_2:67974731-67974750 | None:intergenic | 30.0% | |
TCATTGCCACAAGAAATTAA+AGG | + | chr6_2:67974732-67974751 | None:intergenic | 30.0% | |
TAATTTCTTGTGGCAATGAA+TGG | - | chr6_2:67974733-67974752 | Msa0925180:intron | 30.0% | |
ATATTTAAGAAATGAGAGGG+TGG | + | chr6_2:67974845-67974864 | None:intergenic | 30.0% | |
ATCTCGAAGAAGAAAAAACA+CGG | + | chr6_2:67974941-67974960 | None:intergenic | 30.0% | |
GTACATATGAAGTAATTTGG+GGG | - | chr6_2:67974963-67974982 | Msa0925180:intron | 30.0% | |
! | TTTTAATGGTAACTCACTCA+GGG | + | chr6_2:67975053-67975072 | None:intergenic | 30.0% |
! | AAGCAACACTTGACTTTTAA+TGG | + | chr6_2:67975067-67975086 | None:intergenic | 30.0% |
!!! | ATTCATTTTGAAACTGAGAG+AGG | + | chr6_2:67975120-67975139 | None:intergenic | 30.0% |
! | ATGGTTAACATTTCCCTTTT+TGG | - | chr6_2:67975500-67975519 | Msa0925180:intron | 30.0% |
! | TGGTTAACATTTCCCTTTTT+GGG | - | chr6_2:67975501-67975520 | Msa0925180:intron | 30.0% |
!!! | GGCACTTTATTGACTTTTAA+AGG | - | chr6_2:67975592-67975611 | Msa0925180:intron | 30.0% |
ATCATCTACTCCTATAAATC+AGG | + | chr6_2:67975750-67975769 | None:intergenic | 30.0% | |
AGATGATGTAGAAGTTGAAA+TGG | - | chr6_2:67975763-67975782 | Msa0925180:CDS | 30.0% | |
TACAAAAGTGAAGCAACAAA+TGG | - | chr6_2:67975959-67975978 | Msa0925180:five_prime_UTR | 30.0% | |
! | AAGGAGTATGCCTCAAATAT+GGG | - | chr6_2:67974196-67974215 | Msa0925180:three_prime_UTR | 35.0% |
! | GGTCCCTTTTAAACAGTTAT+TGG | + | chr6_2:67974293-67974312 | None:intergenic | 35.0% |
TGAACCTTAGGGAAAATAGA+GGG | + | chr6_2:67974490-67974509 | None:intergenic | 35.0% | |
TTGAACCTTAGGGAAAATAG+AGG | + | chr6_2:67974491-67974510 | None:intergenic | 35.0% | |
TGACTAATGTTGGTGTAATG+TGG | - | chr6_2:67974549-67974568 | Msa0925180:CDS | 35.0% | |
TGCCAAATCTTGATTGTGAA+GGG | - | chr6_2:67974606-67974625 | Msa0925180:CDS | 35.0% | |
! | CTTTTAATGGTAACTCACTC+AGG | + | chr6_2:67975054-67975073 | None:intergenic | 35.0% |
! | TAATCTAAAGCAGGTGTAGT+GGG | + | chr6_2:67975096-67975115 | None:intergenic | 35.0% |
! | ATAATCTAAAGCAGGTGTAG+TGG | + | chr6_2:67975097-67975116 | None:intergenic | 35.0% |
TGATGTAGAAGTTGAAATGG+AGG | - | chr6_2:67975766-67975785 | Msa0925180:CDS | 35.0% | |
AGCAACTGAATAAACAGAAG+GGG | + | chr6_2:67976005-67976024 | None:intergenic | 35.0% | |
CAGCAACTGAATAAACAGAA+GGG | + | chr6_2:67976006-67976025 | None:intergenic | 35.0% | |
ACAGCAACTGAATAAACAGA+AGG | + | chr6_2:67976007-67976026 | None:intergenic | 35.0% | |
ACATTATAGTGCAAGCATGA+GGG | + | chr6_2:67976072-67976091 | None:intergenic | 35.0% | |
TACATTATAGTGCAAGCATG+AGG | + | chr6_2:67976073-67976092 | None:intergenic | 35.0% | |
AACACTTCATAAGATTTCCC+TGG | + | chr6_2:67976196-67976215 | None:intergenic | 35.0% | |
! | AAGGAGTATGCCTCAAATAT+GGG | - | chr6_2:67974196-67974215 | Msa0925180:three_prime_UTR | 35.0% |
! | GGTCCCTTTTAAACAGTTAT+TGG | + | chr6_2:67974293-67974312 | None:intergenic | 35.0% |
TGAACCTTAGGGAAAATAGA+GGG | + | chr6_2:67974490-67974509 | None:intergenic | 35.0% | |
TTGAACCTTAGGGAAAATAG+AGG | + | chr6_2:67974491-67974510 | None:intergenic | 35.0% | |
TGACTAATGTTGGTGTAATG+TGG | - | chr6_2:67974549-67974568 | Msa0925180:CDS | 35.0% | |
TGCCAAATCTTGATTGTGAA+GGG | - | chr6_2:67974606-67974625 | Msa0925180:CDS | 35.0% | |
! | CTTTTAATGGTAACTCACTC+AGG | + | chr6_2:67975054-67975073 | None:intergenic | 35.0% |
! | TAATCTAAAGCAGGTGTAGT+GGG | + | chr6_2:67975096-67975115 | None:intergenic | 35.0% |
! | ATAATCTAAAGCAGGTGTAG+TGG | + | chr6_2:67975097-67975116 | None:intergenic | 35.0% |
TGATGTAGAAGTTGAAATGG+AGG | - | chr6_2:67975766-67975785 | Msa0925180:CDS | 35.0% | |
AGCAACTGAATAAACAGAAG+GGG | + | chr6_2:67976005-67976024 | None:intergenic | 35.0% | |
CAGCAACTGAATAAACAGAA+GGG | + | chr6_2:67976006-67976025 | None:intergenic | 35.0% | |
ACAGCAACTGAATAAACAGA+AGG | + | chr6_2:67976007-67976026 | None:intergenic | 35.0% | |
ACATTATAGTGCAAGCATGA+GGG | + | chr6_2:67976072-67976091 | None:intergenic | 35.0% | |
TACATTATAGTGCAAGCATG+AGG | + | chr6_2:67976073-67976092 | None:intergenic | 35.0% | |
AACACTTCATAAGATTTCCC+TGG | + | chr6_2:67976196-67976215 | None:intergenic | 35.0% | |
CATAATGAGAGACAAGGTGA+AGG | - | chr6_2:67974177-67974196 | Msa0925180:three_prime_UTR | 40.0% | |
! | GAAGGAGTATGCCTCAAATA+TGG | - | chr6_2:67974195-67974214 | Msa0925180:three_prime_UTR | 40.0% |
! | AGGAGTATGCCTCAAATATG+GGG | - | chr6_2:67974197-67974216 | Msa0925180:three_prime_UTR | 40.0% |
!! | GAACAAAGTGTCGTTGTTGT+TGG | + | chr6_2:67974340-67974359 | None:intergenic | 40.0% |
AAGAGAGTTGTGTTCTGTTG+TGG | + | chr6_2:67974383-67974402 | None:intergenic | 40.0% | |
! | TTCTCCCTCTATTTTCCCTA+AGG | - | chr6_2:67974483-67974502 | Msa0925180:CDS | 40.0% |
GTGCCAAATCTTGATTGTGA+AGG | - | chr6_2:67974605-67974624 | Msa0925180:CDS | 40.0% | |
CACCCTTCACAATCAAGATT+TGG | + | chr6_2:67974611-67974630 | None:intergenic | 40.0% | |
TTTCTTGTGGCAATGAATGG+TGG | - | chr6_2:67974736-67974755 | Msa0925180:intron | 40.0% | |
TGGCCTAAAGGAACATTCTT+TGG | - | chr6_2:67974762-67974781 | Msa0925180:intron | 40.0% | |
GGCCTAAAGGAACATTCTTT+GGG | - | chr6_2:67974763-67974782 | Msa0925180:intron | 40.0% | |
GCCTAAAGGAACATTCTTTG+GGG | - | chr6_2:67974764-67974783 | Msa0925180:intron | 40.0% | |
! | GAGAGAGGATAATCTAAAGC+AGG | + | chr6_2:67975105-67975124 | None:intergenic | 40.0% |
CGGTTAACATGACCCAAAAA+GGG | + | chr6_2:67975516-67975535 | None:intergenic | 40.0% | |
!!! | CCTTTTTGGGTCATGTTAAC+CGG | - | chr6_2:67975514-67975533 | Msa0925180:intron | 40.0% |
AAATGTTAACCAGTGCCTCA+GGG | + | chr6_2:67975680-67975699 | None:intergenic | 40.0% | |
GCACAAAAGATAACAGTCAG+AGG | - | chr6_2:67975788-67975807 | Msa0925180:CDS | 40.0% | |
AAGATAACAGTCAGAGGCTA+TGG | - | chr6_2:67975794-67975813 | Msa0925180:CDS | 40.0% | |
TTGAAAGCAATCAAACGTGC+AGG | - | chr6_2:67975836-67975855 | Msa0925180:intron | 40.0% | |
TGAAAGCAATCAAACGTGCA+GGG | - | chr6_2:67975837-67975856 | Msa0925180:intron | 40.0% | |
CATAATGAGAGACAAGGTGA+AGG | - | chr6_2:67974177-67974196 | Msa0925180:three_prime_UTR | 40.0% | |
! | GAAGGAGTATGCCTCAAATA+TGG | - | chr6_2:67974195-67974214 | Msa0925180:three_prime_UTR | 40.0% |
! | AGGAGTATGCCTCAAATATG+GGG | - | chr6_2:67974197-67974216 | Msa0925180:three_prime_UTR | 40.0% |
!! | GAACAAAGTGTCGTTGTTGT+TGG | + | chr6_2:67974340-67974359 | None:intergenic | 40.0% |
AAGAGAGTTGTGTTCTGTTG+TGG | + | chr6_2:67974383-67974402 | None:intergenic | 40.0% | |
! | TTCTCCCTCTATTTTCCCTA+AGG | - | chr6_2:67974483-67974502 | Msa0925180:CDS | 40.0% |
GTGCCAAATCTTGATTGTGA+AGG | - | chr6_2:67974605-67974624 | Msa0925180:CDS | 40.0% | |
CACCCTTCACAATCAAGATT+TGG | + | chr6_2:67974611-67974630 | None:intergenic | 40.0% | |
TTTCTTGTGGCAATGAATGG+TGG | - | chr6_2:67974736-67974755 | Msa0925180:intron | 40.0% | |
TGGCCTAAAGGAACATTCTT+TGG | - | chr6_2:67974762-67974781 | Msa0925180:intron | 40.0% | |
GGCCTAAAGGAACATTCTTT+GGG | - | chr6_2:67974763-67974782 | Msa0925180:intron | 40.0% | |
GCCTAAAGGAACATTCTTTG+GGG | - | chr6_2:67974764-67974783 | Msa0925180:intron | 40.0% | |
! | GAGAGAGGATAATCTAAAGC+AGG | + | chr6_2:67975105-67975124 | None:intergenic | 40.0% |
CGGTTAACATGACCCAAAAA+GGG | + | chr6_2:67975516-67975535 | None:intergenic | 40.0% | |
!!! | CCTTTTTGGGTCATGTTAAC+CGG | - | chr6_2:67975514-67975533 | Msa0925180:intron | 40.0% |
AAATGTTAACCAGTGCCTCA+GGG | + | chr6_2:67975680-67975699 | None:intergenic | 40.0% | |
GCACAAAAGATAACAGTCAG+AGG | - | chr6_2:67975788-67975807 | Msa0925180:CDS | 40.0% | |
AAGATAACAGTCAGAGGCTA+TGG | - | chr6_2:67975794-67975813 | Msa0925180:CDS | 40.0% | |
TTGAAAGCAATCAAACGTGC+AGG | - | chr6_2:67975836-67975855 | Msa0925180:intron | 40.0% | |
TGAAAGCAATCAAACGTGCA+GGG | - | chr6_2:67975837-67975856 | Msa0925180:intron | 40.0% | |
GGAGTATGCCTCAAATATGG+GGG | - | chr6_2:67974198-67974217 | Msa0925180:three_prime_UTR | 45.0% | |
! | TATGGGGGAGCGCAATAAAA+AGG | - | chr6_2:67974213-67974232 | Msa0925180:three_prime_UTR | 45.0% |
! | GCGCAATAAAAAGGCATGCT+TGG | - | chr6_2:67974222-67974241 | Msa0925180:three_prime_UTR | 45.0% |
AGTTGTGTTCTGTTGTGGTG+TGG | + | chr6_2:67974378-67974397 | None:intergenic | 45.0% | |
GCCCCAAAGAATGTTCCTTT+AGG | + | chr6_2:67974768-67974787 | None:intergenic | 45.0% | |
CCGGTTAACATGACCCAAAA+AGG | + | chr6_2:67975517-67975536 | None:intergenic | 45.0% | |
AATGTTAACCAGTGCCTCAG+GGG | + | chr6_2:67975679-67975698 | None:intergenic | 45.0% | |
GAAATGTTAACCAGTGCCTC+AGG | + | chr6_2:67975681-67975700 | None:intergenic | 45.0% | |
TGAGTATGGCCAGGTAGAAA+TGG | + | chr6_2:67975881-67975900 | None:intergenic | 45.0% | |
GAAGCAAAATGAGTATGGCC+AGG | + | chr6_2:67975890-67975909 | None:intergenic | 45.0% | |
! | AGTTGCTGTTGCATCTGATG+AGG | - | chr6_2:67976018-67976037 | Msa0925180:five_prime_UTR | 45.0% |
GAAGAGGTGAAAGTTGAGTG+AGG | - | chr6_2:67976155-67976174 | Msa0925180:five_prime_UTR | 45.0% | |
!! | AGGCATGTTTTTGCACTTCC+AGG | - | chr6_2:67976175-67976194 | Msa0925180:five_prime_UTR | 45.0% |
!! | GGCATGTTTTTGCACTTCCA+GGG | - | chr6_2:67976176-67976195 | Msa0925180:five_prime_UTR | 45.0% |
GGAGTATGCCTCAAATATGG+GGG | - | chr6_2:67974198-67974217 | Msa0925180:three_prime_UTR | 45.0% | |
! | TATGGGGGAGCGCAATAAAA+AGG | - | chr6_2:67974213-67974232 | Msa0925180:three_prime_UTR | 45.0% |
! | GCGCAATAAAAAGGCATGCT+TGG | - | chr6_2:67974222-67974241 | Msa0925180:three_prime_UTR | 45.0% |
AGTTGTGTTCTGTTGTGGTG+TGG | + | chr6_2:67974378-67974397 | None:intergenic | 45.0% | |
GCCCCAAAGAATGTTCCTTT+AGG | + | chr6_2:67974768-67974787 | None:intergenic | 45.0% | |
CCGGTTAACATGACCCAAAA+AGG | + | chr6_2:67975517-67975536 | None:intergenic | 45.0% | |
AATGTTAACCAGTGCCTCAG+GGG | + | chr6_2:67975679-67975698 | None:intergenic | 45.0% | |
GAAATGTTAACCAGTGCCTC+AGG | + | chr6_2:67975681-67975700 | None:intergenic | 45.0% | |
TGAGTATGGCCAGGTAGAAA+TGG | + | chr6_2:67975881-67975900 | None:intergenic | 45.0% | |
GAAGCAAAATGAGTATGGCC+AGG | + | chr6_2:67975890-67975909 | None:intergenic | 45.0% | |
! | AGTTGCTGTTGCATCTGATG+AGG | - | chr6_2:67976018-67976037 | Msa0925180:five_prime_UTR | 45.0% |
GAAGAGGTGAAAGTTGAGTG+AGG | - | chr6_2:67976155-67976174 | Msa0925180:five_prime_UTR | 45.0% | |
!! | AGGCATGTTTTTGCACTTCC+AGG | - | chr6_2:67976175-67976194 | Msa0925180:five_prime_UTR | 45.0% |
!! | GGCATGTTTTTGCACTTCCA+GGG | - | chr6_2:67976176-67976195 | Msa0925180:five_prime_UTR | 45.0% |
ATTGCGCTCCCCCATATTTG+AGG | + | chr6_2:67974209-67974228 | None:intergenic | 50.0% | |
GTTGTGGTGTGGTCACTGTT+TGG | + | chr6_2:67974367-67974386 | None:intergenic | 50.0% | |
!! | GTGGCAATGAATGGTGGACA+TGG | - | chr6_2:67974742-67974761 | Msa0925180:intron | 50.0% |
!! | GAATGGTGGACATGGCCTAA+AGG | - | chr6_2:67974750-67974769 | Msa0925180:intron | 50.0% |
! | TCTAAAGCAGGTGTAGTGGG+TGG | + | chr6_2:67975093-67975112 | None:intergenic | 50.0% |
TTTCTTAACCTGTGCCCCGA+GGG | + | chr6_2:67975542-67975561 | None:intergenic | 50.0% | |
! | TTTTCTTAACCTGTGCCCCG+AGG | + | chr6_2:67975543-67975562 | None:intergenic | 50.0% |
TGGTTCTTAACCAGTGCCTC+TGG | - | chr6_2:67975653-67975672 | Msa0925180:intron | 50.0% | |
GAACCATGGCCATTTCTACC+TGG | - | chr6_2:67975869-67975888 | Msa0925180:intron | 50.0% | |
ATTGCGCTCCCCCATATTTG+AGG | + | chr6_2:67974209-67974228 | None:intergenic | 50.0% | |
GTTGTGGTGTGGTCACTGTT+TGG | + | chr6_2:67974367-67974386 | None:intergenic | 50.0% | |
!! | GTGGCAATGAATGGTGGACA+TGG | - | chr6_2:67974742-67974761 | Msa0925180:intron | 50.0% |
!! | GAATGGTGGACATGGCCTAA+AGG | - | chr6_2:67974750-67974769 | Msa0925180:intron | 50.0% |
! | TCTAAAGCAGGTGTAGTGGG+TGG | + | chr6_2:67975093-67975112 | None:intergenic | 50.0% |
TTTCTTAACCTGTGCCCCGA+GGG | + | chr6_2:67975542-67975561 | None:intergenic | 50.0% | |
! | TTTTCTTAACCTGTGCCCCG+AGG | + | chr6_2:67975543-67975562 | None:intergenic | 50.0% |
TGGTTCTTAACCAGTGCCTC+TGG | - | chr6_2:67975653-67975672 | Msa0925180:intron | 50.0% | |
GAACCATGGCCATTTCTACC+TGG | - | chr6_2:67975869-67975888 | Msa0925180:intron | 50.0% | |
GTCATGTTAACCGGTGCCCT+CGG | - | chr6_2:67975523-67975542 | Msa0925180:intron | 55.0% | |
TCATGTTAACCGGTGCCCTC+GGG | - | chr6_2:67975524-67975543 | Msa0925180:intron | 55.0% | |
CAGGGAAAGCAGCAGAACCA+TGG | - | chr6_2:67975855-67975874 | Msa0925180:intron | 55.0% | |
TGGCCAGGTAGAAATGGCCA+TGG | + | chr6_2:67975875-67975894 | None:intergenic | 55.0% | |
GTCATGTTAACCGGTGCCCT+CGG | - | chr6_2:67975523-67975542 | Msa0925180:intron | 55.0% | |
TCATGTTAACCGGTGCCCTC+GGG | - | chr6_2:67975524-67975543 | Msa0925180:intron | 55.0% | |
CAGGGAAAGCAGCAGAACCA+TGG | - | chr6_2:67975855-67975874 | Msa0925180:intron | 55.0% | |
TGGCCAGGTAGAAATGGCCA+TGG | + | chr6_2:67975875-67975894 | None:intergenic | 55.0% | |
CATGTTAACCGGTGCCCTCG+GGG | - | chr6_2:67975525-67975544 | Msa0925180:intron | 60.0% | |
CATGTTAACCGGTGCCCTCG+GGG | - | chr6_2:67975525-67975544 | Msa0925180:intron | 60.0% | |
! | AACCTGTGCCCCGAGGGCAC+CGG | + | chr6_2:67975536-67975555 | None:intergenic | 70.0% |
ACCAGTGCCTCTGGCCCCTG+AGG | - | chr6_2:67975662-67975681 | Msa0925180:intron | 70.0% | |
ACCAGTGCCTCAGGGGCCAG+AGG | + | chr6_2:67975672-67975691 | None:intergenic | 70.0% | |
! | AACCTGTGCCCCGAGGGCAC+CGG | + | chr6_2:67975536-67975555 | None:intergenic | 70.0% |
ACCAGTGCCTCTGGCCCCTG+AGG | - | chr6_2:67975662-67975681 | Msa0925180:intron | 70.0% | |
ACCAGTGCCTCAGGGGCCAG+AGG | + | chr6_2:67975672-67975691 | None:intergenic | 70.0% | |
AACCGGTGCCCTCGGGGCAC+AGG | - | chr6_2:67975531-67975550 | Msa0925180:intron | 75.0% | |
! | GCCTCAGGGGCCAGAGGCAC+TGG | + | chr6_2:67975666-67975685 | None:intergenic | 75.0% |
GCCTCTGGCCCCTGAGGCAC+TGG | - | chr6_2:67975668-67975687 | Msa0925180:intron | 75.0% | |
AACCGGTGCCCTCGGGGCAC+AGG | - | chr6_2:67975531-67975550 | Msa0925180:intron | 75.0% | |
! | GCCTCAGGGGCCAGAGGCAC+TGG | + | chr6_2:67975666-67975685 | None:intergenic | 75.0% |
GCCTCTGGCCCCTGAGGCAC+TGG | - | chr6_2:67975668-67975687 | Msa0925180:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 67974173 | 67976236 | 67974173 | ID=Msa0925180;Name=Msa0925180 |
chr6_2 | mRNA | 67974173 | 67976236 | 67974173 | ID=Msa0925180-mRNA-1;Parent=Msa0925180;Name=Msa0925180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=295|1|1|1|1|1|3|143|140 |
chr6_2 | exon | 67974173 | 67974650 | 67974173 | ID=Msa0925180-mRNA-1:exon:10767;Parent=Msa0925180-mRNA-1 |
chr6_2 | exon | 67975741 | 67975822 | 67975741 | ID=Msa0925180-mRNA-1:exon:10766;Parent=Msa0925180-mRNA-1 |
chr6_2 | exon | 67975936 | 67976236 | 67975936 | ID=Msa0925180-mRNA-1:exon:10765;Parent=Msa0925180-mRNA-1 |
chr6_2 | five_prime_UTR | 67975942 | 67976236 | 67975942 | ID=Msa0925180-mRNA-1:five_prime_utr;Parent=Msa0925180-mRNA-1 |
chr6_2 | CDS | 67975936 | 67975941 | 67975936 | ID=Msa0925180-mRNA-1:cds;Parent=Msa0925180-mRNA-1 |
chr6_2 | CDS | 67975741 | 67975822 | 67975741 | ID=Msa0925180-mRNA-1:cds;Parent=Msa0925180-mRNA-1 |
chr6_2 | CDS | 67974316 | 67974650 | 67974316 | ID=Msa0925180-mRNA-1:cds;Parent=Msa0925180-mRNA-1 |
chr6_2 | three_prime_UTR | 67974173 | 67974315 | 67974173 | ID=Msa0925180-mRNA-1:three_prime_utr;Parent=Msa0925180-mRNA-1 |
Gene Sequence |
Protein sequence |