Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103490 | XP_003588420.2 | 99.013 | 304 | 3 | 0 | 1 | 304 | 1 | 304 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103490 | sp|Q96B26|EXOS8_HUMAN | 35.088 | 285 | 169 | 4 | 20 | 302 | 4 | 274 | 6.75e-59 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103490 | G7I253 | 99.013 | 304 | 3 | 0 | 1 | 304 | 1 | 304 | 0.0 | 616 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0103490 | Msa0183010 | 0.807036 | 6.149480e-50 | -8.615850e-47 |
| Msa0103490 | Msa0230640 | 0.822078 | 2.871571e-53 | -8.615850e-47 |
| Msa0103490 | Msa0381600 | 0.806294 | 8.820188e-50 | -8.615850e-47 |
| Msa0103490 | Msa0388540 | 0.823932 | 1.061407e-53 | -8.615850e-47 |
| Msa0103490 | Msa0467740 | 0.804743 | 1.866111e-49 | -8.615850e-47 |
| Msa0103490 | Msa0881210 | 0.825748 | 3.958294e-54 | -8.615850e-47 |
| Msa0103490 | Msa1225730 | 0.812376 | 4.373414e-51 | -8.615850e-47 |
| Msa0103490 | Msa1404240 | 0.850977 | 1.197416e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103490 | MtrunA17_Chr1g0146281 | 99.013 | 304 | 3 | 0 | 1 | 304 | 1 | 304 | 0.0 | 616 |
| Msa0103490 | MtrunA17_Chr1g0180521 | 27.465 | 284 | 186 | 6 | 28 | 304 | 17 | 287 | 5.37e-30 | 115 |
| Msa0103490 | MtrunA17_Chr2g0285831 | 26.978 | 278 | 184 | 6 | 28 | 302 | 17 | 278 | 1.02e-27 | 111 |
| Msa0103490 | MtrunA17_Chr1g0160941 | 28.671 | 286 | 183 | 5 | 28 | 304 | 10 | 283 | 2.29e-25 | 102 |
| Msa0103490 | MtrunA17_Chr8g0373091 | 28.966 | 290 | 175 | 5 | 29 | 304 | 11 | 283 | 1.05e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103490 | AT1G60080.1 | 71.812 | 298 | 78 | 2 | 1 | 294 | 1 | 296 | 9.88e-149 | 419 |
| Msa0103490 | AT3G07750.1 | 28.929 | 280 | 186 | 5 | 28 | 302 | 9 | 280 | 9.80e-26 | 103 |
| Msa0103490 | AT3G07750.2 | 28.929 | 280 | 186 | 5 | 28 | 302 | 9 | 280 | 9.80e-26 | 103 |
| Msa0103490 | AT3G60500.4 | 25.714 | 280 | 192 | 5 | 28 | 304 | 17 | 283 | 3.34e-22 | 95.9 |
| Msa0103490 | AT3G60500.3 | 25.714 | 280 | 192 | 5 | 28 | 304 | 17 | 283 | 1.59e-21 | 94.4 |
| Msa0103490 | AT3G60500.2 | 25.714 | 280 | 192 | 5 | 28 | 304 | 17 | 283 | 1.59e-21 | 94.4 |
| Msa0103490 | AT3G60500.1 | 25.714 | 280 | 192 | 5 | 28 | 304 | 17 | 283 | 1.59e-21 | 94.4 |
| Msa0103490 | AT3G12990.4 | 26.236 | 263 | 176 | 6 | 28 | 286 | 17 | 265 | 5.50e-21 | 90.9 |
| Msa0103490 | AT3G12990.1 | 26.236 | 263 | 176 | 6 | 28 | 286 | 17 | 265 | 8.25e-21 | 90.9 |
| Msa0103490 | AT3G12990.3 | 26.236 | 263 | 176 | 6 | 28 | 286 | 17 | 265 | 8.25e-21 | 90.9 |
| Msa0103490 | AT3G12990.2 | 27.338 | 139 | 98 | 1 | 28 | 166 | 17 | 152 | 1.31e-14 | 72.0 |
Find 123 sgRNAs with CRISPR-Local
Find 514 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACTTTGGTTCATATATT+TGG | 0.167191 | 1_3:-10656299 | Msa0103490:three_prime_UTR |
| TGTTTGTACATTATAAATTA+AGG | 0.238662 | 1_3:-10656412 | Msa0103490:three_prime_UTR |
| CGGGTTTGTTGGGTCGGGTC+CGG | 0.273327 | 1_3:+10663479 | None:intergenic |
| GGATTTAAACCGAATAATTA+AGG | 0.291122 | 1_3:+10656195 | None:intergenic |
| CGATTTGTTCTCCGATTGTT+AGG | 0.294873 | 1_3:-10661677 | Msa0103490:CDS |
| AGTTATTAGGTCAGTGTATT+GGG | 0.298476 | 1_3:+10663451 | None:intergenic |
| TCTGCTTCAGCAGGCCTGCC+AGG | 0.301518 | 1_3:+10661654 | None:intergenic |
| AGAAAGTATCCTTAATTATT+CGG | 0.301821 | 1_3:-10656204 | Msa0103490:three_prime_UTR |
| GACAAAGGAGCAAGTCAATA+AGG | 0.312720 | 1_3:-10657461 | Msa0103490:CDS |
| TGTCACATGGGTTTCCACTA+TGG | 0.313492 | 1_3:+10657342 | None:intergenic |
| AATGCAGGATATCTATTGTT+TGG | 0.323709 | 1_3:-10660898 | Msa0103490:intron |
| AGATGAGGGAGGGAGTTATT+AGG | 0.333086 | 1_3:+10663438 | None:intergenic |
| GGTGCTGTTGCATCTGCTAA+TGG | 0.344645 | 1_3:-10662038 | Msa0103490:CDS |
| TCCTCCGTTGCAGCAGCATT+TGG | 0.348161 | 1_3:+10663265 | None:intergenic |
| GAGGGTGGCGCAACGGTCAG+TGG | 0.349862 | 1_3:+10663391 | None:intergenic |
| CAAGATGACGTTCGAAATAT+CGG | 0.353462 | 1_3:+10663194 | None:intergenic |
| TATGTTGACTGCCATTAAAA+TGG | 0.360089 | 1_3:-10661870 | Msa0103490:CDS |
| GGGTTTGTTGGGTCGGGTCC+GGG | 0.365023 | 1_3:+10663480 | None:intergenic |
| GCTCAACGGGTTTGTTGGGT+CGG | 0.370344 | 1_3:+10663473 | None:intergenic |
| ATTGGGCTCAACGGGTTTGT+TGG | 0.375745 | 1_3:+10663468 | None:intergenic |
| AGTATGCATGTTAATGATAA+TGG | 0.378572 | 1_3:+10657409 | None:intergenic |
| AACCCATGTGACAATCGTTC+TGG | 0.387086 | 1_3:-10657332 | Msa0103490:CDS |
| TCTTATTGCCATTCCAACTT+TGG | 0.390372 | 1_3:-10656312 | Msa0103490:three_prime_UTR |
| GTCAGTGTATTGGGCTCAAC+GGG | 0.393199 | 1_3:+10663460 | None:intergenic |
| CTCAACGGGTTTGTTGGGTC+GGG | 0.399150 | 1_3:+10663474 | None:intergenic |
| AGCTGCATGGATGGCTTACT+TGG | 0.402269 | 1_3:-10661053 | Msa0103490:intron |
| TGCCTATACTTCTGCTATCC+AGG | 0.404216 | 1_3:-10657260 | Msa0103490:intron |
| CTCCGATTGTTAGGCCTGGC+AGG | 0.405390 | 1_3:-10661668 | Msa0103490:CDS |
| GAGTTATTAGGTCAGTGTAT+TGG | 0.407016 | 1_3:+10663450 | None:intergenic |
| GGAGGATTTGTCGTCTGAAA+TGG | 0.407849 | 1_3:-10663248 | Msa0103490:CDS |
| CGGAGGCATATGGAAGTCTA+TGG | 0.408748 | 1_3:+10661698 | None:intergenic |
| GATTAAAACTTGCCTTGTAA+TGG | 0.411652 | 1_3:+10661602 | None:intergenic |
| TTGGGCTCAACGGGTTTGTT+GGG | 0.415894 | 1_3:+10663469 | None:intergenic |
| CAGGCCTGCTGAAGCAGAGC+CGG | 0.424939 | 1_3:-10661649 | Msa0103490:CDS |
| ATTATAAATTAAGGTACTGC+TGG | 0.428355 | 1_3:-10656403 | Msa0103490:three_prime_UTR |
| TAATCTCAATGATCTATTCT+CGG | 0.438290 | 1_3:-10663508 | Msa0103490:five_prime_UTR |
| TCGTATTTGCTTGACGGTGG+TGG | 0.445313 | 1_3:+10663338 | None:intergenic |
| CGAAATATCGGAGCGGGAAA+AGG | 0.449213 | 1_3:+10663206 | None:intergenic |
| GGAAGTTATGACTCCTTCCT+TGG | 0.451336 | 1_3:-10661849 | Msa0103490:CDS |
| TCACCAGACGAGGGTTGCTT+AGG | 0.453044 | 1_3:-10661824 | Msa0103490:intron |
| CCAAATATATGAACCAAAGT+TGG | 0.458284 | 1_3:+10656299 | None:intergenic |
| GTGCTGTTGCATCTGCTAAT+GGG | 0.462693 | 1_3:-10662037 | Msa0103490:CDS |
| CCTCTCCCATTCGGTTAGAA+TGG | 0.468392 | 1_3:+10656231 | None:intergenic |
| GGGTCAGCTCTTGTGAAGAT+TGG | 0.474905 | 1_3:-10662017 | Msa0103490:CDS |
| GGCCTGCCAGGCCTAACAAT+CGG | 0.478065 | 1_3:+10661666 | None:intergenic |
| GGCGCAACGGTCAGTGGGAA+AGG | 0.478232 | 1_3:+10663397 | None:intergenic |
| CTCATTCTGTAATGCAATTG+TGG | 0.480886 | 1_3:+10663292 | None:intergenic |
| GAGAACAAATCGGAGGCATA+TGG | 0.481259 | 1_3:+10661688 | None:intergenic |
| TTTCTAACTCCTCTCCCATT+CGG | 0.485938 | 1_3:+10656222 | None:intergenic |
| CCCATTCGGTTAGAATGGAA+TGG | 0.487010 | 1_3:+10656236 | None:intergenic |
| GAACCTAAGCAACCCTCGTC+TGG | 0.488353 | 1_3:+10661821 | None:intergenic |
| ACAGTTTCGTATTTGCTTGA+CGG | 0.489705 | 1_3:+10663332 | None:intergenic |
| ATCTATTGTTTGGATGCTGA+CGG | 0.493395 | 1_3:-10660888 | Msa0103490:CDS |
| GCAGAAGTATAGGCAAGAAC+TGG | 0.495829 | 1_3:+10657268 | None:intergenic |
| TTCCTTGGAGTCACCAGACG+AGG | 0.497940 | 1_3:-10661834 | Msa0103490:CDS |
| CTAATATCTCTTTACAAGCC+TGG | 0.503737 | 1_3:-10657295 | Msa0103490:CDS |
| ACAATCGTTCTGGATACATC+TGG | 0.510136 | 1_3:-10657322 | Msa0103490:CDS |
| TTATAAATTAAGGTACTGCT+GGG | 0.516033 | 1_3:-10656402 | Msa0103490:three_prime_UTR |
| ATGGATTCTTCTTCTGCAGT+AGG | 0.517127 | 1_3:+10657361 | None:intergenic |
| ACAACCGGCTCTGCTTCAGC+AGG | 0.520816 | 1_3:+10661645 | None:intergenic |
| GACGTTCGAAATATCGGAGC+GGG | 0.522328 | 1_3:+10663200 | None:intergenic |
| GACAACTGCTTTGACACAAC+CGG | 0.523266 | 1_3:+10661630 | None:intergenic |
| ACCATTCCATTCTAACCGAA+TGG | 0.525476 | 1_3:-10656237 | Msa0103490:three_prime_UTR |
| GATCTATTCTCGGACGAACC+CGG | 0.525582 | 1_3:-10663498 | Msa0103490:five_prime_UTR |
| TCTATTGTTTGGATGCTGAC+GGG | 0.526345 | 1_3:-10660887 | Msa0103490:CDS |
| CTTCACTCTTTGCCTAGTCA+AGG | 0.527124 | 1_3:+10656530 | None:intergenic |
| CAAAGAAAATTCTGCTATGG+AGG | 0.528144 | 1_3:-10656487 | Msa0103490:CDS |
| AGACAAAGAAAATTCTGCTA+TGG | 0.528919 | 1_3:-10656490 | Msa0103490:CDS |
| TTGAGAGAGTTGTCCTTGGT+TGG | 0.529563 | 1_3:-10661082 | Msa0103490:CDS |
| AAGGAATCAACGAGTGGGGA+GGG | 0.529973 | 1_3:+10663373 | None:intergenic |
| CCATTCCATTCTAACCGAAT+GGG | 0.529998 | 1_3:-10656236 | Msa0103490:three_prime_UTR |
| CTAACAATCGGAGAACAAAT+CGG | 0.530418 | 1_3:+10661678 | None:intergenic |
| GCTGAATCTATTCGTTCTGA+TGG | 0.531863 | 1_3:-10663172 | Msa0103490:CDS |
| GTGGTGGACGCGAACGGAGA+AGG | 0.532333 | 1_3:+10663354 | None:intergenic |
| AGGGTGGCGCAACGGTCAGT+GGG | 0.532468 | 1_3:+10663392 | None:intergenic |
| TGATTTGAGAGAGTTGTCCT+TGG | 0.533720 | 1_3:-10661086 | Msa0103490:CDS |
| TAGGCAAGAACTGGCCCACC+AGG | 0.534699 | 1_3:+10657277 | None:intergenic |
| GTACTCATGTCTGATGAAGA+TGG | 0.534833 | 1_3:-10657493 | Msa0103490:CDS |
| AGGACTGTGTTGCCTTGACT+AGG | 0.535125 | 1_3:-10656542 | Msa0103490:CDS |
| ACTTCACAAGAACTACATCT+TGG | 0.539032 | 1_3:-10657389 | Msa0103490:CDS |
| TATATGAACCAAAGTTGGAA+TGG | 0.544889 | 1_3:+10656304 | None:intergenic |
| TCCAAATGCTGCTGCAACGG+AGG | 0.548875 | 1_3:-10663266 | Msa0103490:CDS |
| AACTTCTGGCGAAGAAGATG+AGG | 0.550564 | 1_3:+10663423 | None:intergenic |
| GAATCAACGAGTGGGGAGGG+TGG | 0.551031 | 1_3:+10663376 | None:intergenic |
| TCATCATTCATGGCTACAGC+AGG | 0.551700 | 1_3:+10657526 | None:intergenic |
| CCATTCTAACCGAATGGGAG+AGG | 0.552752 | 1_3:-10656231 | Msa0103490:three_prime_UTR |
| AACTTGCCTTGTAATGGTGT+CGG | 0.554769 | 1_3:+10661608 | None:intergenic |
| TGTTCTCCGATTGTTAGGCC+TGG | 0.555136 | 1_3:-10661672 | Msa0103490:CDS |
| AGCAAGTCAATAAGGAGAAG+AGG | 0.555566 | 1_3:-10657453 | Msa0103490:CDS |
| GAGTGGGGAGGGTGGCGCAA+CGG | 0.558349 | 1_3:+10663384 | None:intergenic |
| TACCTGGATAGCAGAAGTAT+AGG | 0.563807 | 1_3:+10657258 | None:intergenic |
| GAAGGAATCAACGAGTGGGG+AGG | 0.563883 | 1_3:+10663372 | None:intergenic |
| GGTCAGTGTATTGGGCTCAA+CGG | 0.565265 | 1_3:+10663459 | None:intergenic |
| TGGTGGAAAAGCTGCATGGA+TGG | 0.577853 | 1_3:-10661062 | Msa0103490:CDS |
| TGCAGAAGAAGAATCCATAG+TGG | 0.580538 | 1_3:-10657356 | Msa0103490:CDS |
| AGAGAGTTGTCCTTGGTTGG+TGG | 0.580724 | 1_3:-10661079 | Msa0103490:CDS |
| AGTTGTCCGACACCATTACA+AGG | 0.583544 | 1_3:-10661614 | Msa0103490:intron |
| CGGAGAAGGAATCAACGAGT+GGG | 0.583927 | 1_3:+10663368 | None:intergenic |
| TTGACGGTGGTGGACGCGAA+CGG | 0.588211 | 1_3:+10663348 | None:intergenic |
| TCTTGTGAAGATTGGATCCA+CGG | 0.589881 | 1_3:-10662009 | Msa0103490:intron |
| ATCCAGAACGATTGTCACAT+GGG | 0.589969 | 1_3:+10657330 | None:intergenic |
| ACCCTCGTCTGGTGACTCCA+AGG | 0.590991 | 1_3:+10661832 | None:intergenic |
| TCGTCTGGTGACTCCAAGGA+AGG | 0.603806 | 1_3:+10661836 | None:intergenic |
| TATCCAGAACGATTGTCACA+TGG | 0.603874 | 1_3:+10657329 | None:intergenic |
| CTGGCGAAGAAGATGAGGGA+GGG | 0.610465 | 1_3:+10663428 | None:intergenic |
| CTTGACTAGGCAAAGAGTGA+AGG | 0.612342 | 1_3:-10656529 | Msa0103490:CDS |
| TGTTCCAAATGCTGCTGCAA+CGG | 0.613285 | 1_3:-10663269 | Msa0103490:CDS |
| TATCTCTTTACAAGCCTGGT+GGG | 0.624143 | 1_3:-10657291 | Msa0103490:CDS |
| AGCAAATACGAAACTGTGTG+TGG | 0.629408 | 1_3:-10663326 | Msa0103490:five_prime_UTR |
| GTTTCGTATTTGCTTGACGG+TGG | 0.629518 | 1_3:+10663335 | None:intergenic |
| GTATCTCTAGCTTCTCTAAG+CGG | 0.649076 | 1_3:+10663145 | None:intergenic |
| ACTTCTGGCGAAGAAGATGA+GGG | 0.654070 | 1_3:+10663424 | None:intergenic |
| ACGGAGAAGGAATCAACGAG+TGG | 0.655448 | 1_3:+10663367 | None:intergenic |
| TGGTTGGTGGAAAAGCTGCA+TGG | 0.657772 | 1_3:-10661066 | Msa0103490:CDS |
| TCCTTGGAGTCACCAGACGA+GGG | 0.659573 | 1_3:-10661833 | Msa0103490:CDS |
| AGATGGACAGAAGCAGACAA+AGG | 0.661694 | 1_3:-10657476 | Msa0103490:CDS |
| ATATCTCTTTACAAGCCTGG+TGG | 0.666867 | 1_3:-10657292 | Msa0103490:CDS |
| GCTGTAGCCATGAATGATGA+CGG | 0.675670 | 1_3:-10657523 | Msa0103490:CDS |
| TCTGGCGAAGAAGATGAGGG+AGG | 0.685325 | 1_3:+10663427 | None:intergenic |
| GGAGAAGGAATCAACGAGTG+GGG | 0.693086 | 1_3:+10663369 | None:intergenic |
| TATAAATTAAGGTACTGCTG+GGG | 0.715421 | 1_3:-10656401 | Msa0103490:three_prime_UTR |
| ACAATCGGAGAACAAATCGG+AGG | 0.723892 | 1_3:+10661681 | None:intergenic |
| TGACGTTCGAAATATCGGAG+CGG | 0.754034 | 1_3:+10663199 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAATTAAAATAAGATAT+AGG | + | chr1_3:10658590-10658609 | None:intergenic | 10.0% |
| !! | AAATAATAATAATAACATTG+CGG | + | chr1_3:10658917-10658936 | None:intergenic | 10.0% |
| !!! | ATTATTATTATTTTTTTGAC+AGG | - | chr1_3:10658924-10658943 | Msa0103490:intron | 10.0% |
| !!! | AGCAAAATATTTTTTTTTAA+TGG | - | chr1_3:10659179-10659198 | Msa0103490:intron | 10.0% |
| !!! | GCAAAATATTTTTTTTTAAT+GGG | - | chr1_3:10659180-10659199 | Msa0103490:intron | 10.0% |
| !! | TTATAACTGAAGATAAATAA+AGG | - | chr1_3:10656819-10656838 | Msa0103490:intron | 15.0% |
| !!! | AAAGTTAAGTTTTTTCTTAT+AGG | + | chr1_3:10657131-10657150 | None:intergenic | 15.0% |
| !! | TAAGAGTTTATATTATAAGT+TGG | - | chr1_3:10657184-10657203 | Msa0103490:intron | 15.0% |
| !! | TAATTCTATTACAAAAGTAA+AGG | + | chr1_3:10657388-10657407 | None:intergenic | 15.0% |
| !! | ATAACATATAACGAAATTTA+AGG | - | chr1_3:10659060-10659079 | Msa0103490:intron | 15.0% |
| !!! | TCTATCATATTTTGATATAT+TGG | - | chr1_3:10659425-10659444 | Msa0103490:intron | 15.0% |
| !!! | CATTTGTTATTATGATATAT+TGG | - | chr1_3:10659553-10659572 | Msa0103490:intron | 15.0% |
| !! | TTACAACTATGATTAAAATT+TGG | - | chr1_3:10661867-10661886 | Msa0103490:CDS | 15.0% |
| !! | TAAAACAACATAAGTAAAAA+AGG | + | chr1_3:10662006-10662025 | None:intergenic | 15.0% |
| !!! | TTAATCATAACAATTTTGAA+TGG | - | chr1_3:10663269-10663288 | Msa0103490:CDS | 15.0% |
| !! | TGTTTGTACATTATAAATTA+AGG | - | chr1_3:10663304-10663323 | Msa0103490:five_prime_UTR | 15.0% |
| !!! | TATTTTCATGAAATTGATAA+TGG | - | chr1_3:10663359-10663378 | Msa0103490:five_prime_UTR | 15.0% |
| !!! | AAGCTATTTTCATAATGTAT+TGG | - | chr1_3:10656728-10656747 | Msa0103490:intron | 20.0% |
| !!! | CTTTATGTTATCTTTTGTTA+TGG | - | chr1_3:10657147-10657166 | Msa0103490:intron | 20.0% |
| !! | AAAAAGTTCCTTTAAATCTA+AGG | + | chr1_3:10658287-10658306 | None:intergenic | 20.0% |
| !!! | TTGGTCTATGTTATAATTTT+GGG | - | chr1_3:10658489-10658508 | Msa0103490:intron | 20.0% |
| !!! | ATGTTATAATTTTGGGTAAT+CGG | - | chr1_3:10658496-10658515 | Msa0103490:intron | 20.0% |
| !!! | TTCTTACTTTTATTTTGTTG+CGG | + | chr1_3:10659498-10659517 | None:intergenic | 20.0% |
| !!! | TAATTGTATTGATTTGGAAA+AGG | + | chr1_3:10661009-10661028 | None:intergenic | 20.0% |
| !! | AAAGAAGAATAATGAGAAAA+TGG | - | chr1_3:10661306-10661325 | Msa0103490:intron | 20.0% |
| !! | TTTATCCAACATAATTGTTT+GGG | - | chr1_3:10661833-10661852 | Msa0103490:CDS | 20.0% |
| !!! | TAAAATTTGGTTTTGTGTTA+TGG | - | chr1_3:10661880-10661899 | Msa0103490:intron | 20.0% |
| !! | ACATATATCATTAACATTCA+TGG | - | chr1_3:10662534-10662553 | Msa0103490:intron | 20.0% |
| !!! | ATGATTTTTGTGATGAATTA+TGG | - | chr1_3:10662683-10662702 | Msa0103490:intron | 20.0% |
| !! | ACTACAAACTAAATATAGTA+AGG | + | chr1_3:10662879-10662898 | None:intergenic | 20.0% |
| !!! | TAAAGTTGATTTTGTTTTAC+TGG | - | chr1_3:10663111-10663130 | Msa0103490:intron | 20.0% |
| !!! | TATATTTGGTCGATAATTTT+CGG | - | chr1_3:10663431-10663450 | Msa0103490:five_prime_UTR | 20.0% |
| !!! | AGAAAGTATCCTTAATTATT+CGG | - | chr1_3:10663512-10663531 | Msa0103490:five_prime_UTR | 20.0% |
| ! | TAATCTCAATGATCTATTCT+CGG | - | chr1_3:10656208-10656227 | Msa0103490:three_prime_UTR | 25.0% |
| ! | AAACTAACCAAGAAAAATAC+TGG | + | chr1_3:10656596-10656615 | None:intergenic | 25.0% |
| !! | TTTGTTATCTTTGTTTCGTT+TGG | - | chr1_3:10656655-10656674 | Msa0103490:intron | 25.0% |
| !!! | GTTCATATAAGTTGTTTTCA+AGG | - | chr1_3:10656920-10656939 | Msa0103490:intron | 25.0% |
| !! | ATTGACTTAATTGAGCTTAT+GGG | - | chr1_3:10656953-10656972 | Msa0103490:intron | 25.0% |
| ! | TCAAATAAGTAAATCCAAAC+AGG | + | chr1_3:10656979-10656998 | None:intergenic | 25.0% |
| !!! | CTTTTATTTTACCAGTTCAT+AGG | + | chr1_3:10657236-10657255 | None:intergenic | 25.0% |
| !!! | AAATTGTTTTTGAGAGCTTA+TGG | - | chr1_3:10657264-10657283 | Msa0103490:CDS | 25.0% |
| ! | AATCGTGAATAACATACTAA+AGG | + | chr1_3:10657613-10657632 | None:intergenic | 25.0% |
| ! | TTTAGTATGTTATTCACGAT+TGG | - | chr1_3:10657612-10657631 | Msa0103490:intron | 25.0% |
| ! | TTAGTATGTTATTCACGATT+GGG | - | chr1_3:10657613-10657632 | Msa0103490:intron | 25.0% |
| ! | AAAAAACAAATAACTAACCG+TGG | + | chr1_3:10657727-10657746 | None:intergenic | 25.0% |
| !! | AGTCATAACTTCCATTTTAA+TGG | + | chr1_3:10657860-10657879 | None:intergenic | 25.0% |
| !!! | TTGCTTTTACCACAATAAAA+GGG | - | chr1_3:10658213-10658232 | Msa0103490:intron | 25.0% |
| ! | ATGGAAAAGAGGAAAATAAA+GGG | - | chr1_3:10658243-10658262 | Msa0103490:intron | 25.0% |
| !!! | ATTTTAAAACCAGTAGAAGT+GGG | + | chr1_3:10658412-10658431 | None:intergenic | 25.0% |
| !!! | AATTTTAAAACCAGTAGAAG+TGG | + | chr1_3:10658413-10658432 | None:intergenic | 25.0% |
| !!! | GTTGGTCTATGTTATAATTT+TGG | - | chr1_3:10658488-10658507 | Msa0103490:intron | 25.0% |
| ! | ATAGATAGTTTAAATTCGAC+TGG | + | chr1_3:10658559-10658578 | None:intergenic | 25.0% |
| !!! | TAATTTCTTTTTTCCAGTTC+TGG | - | chr1_3:10658601-10658620 | Msa0103490:intron | 25.0% |
| !! | ATTGATAACTACACATTCAA+AGG | + | chr1_3:10658785-10658804 | None:intergenic | 25.0% |
| ! | ATTATTGAATGACATAATGC+AGG | - | chr1_3:10658803-10658822 | Msa0103490:intron | 25.0% |
| !! | TAGACAAATACATTCTAGTT+GGG | - | chr1_3:10659088-10659107 | Msa0103490:intron | 25.0% |
| ! | TTACAATGTCATTAAGTGAT+AGG | - | chr1_3:10659283-10659302 | Msa0103490:intron | 25.0% |
| !!! | CTCTAGATTCTTACTTTTAT+TGG | + | chr1_3:10659318-10659337 | None:intergenic | 25.0% |
| !!! | TTATGATATATTGGCTTGAA+TGG | - | chr1_3:10659562-10659581 | Msa0103490:intron | 25.0% |
| !! | AAGTAATACAAAGAGCTTTT+CGG | - | chr1_3:10659609-10659628 | Msa0103490:intron | 25.0% |
| !! | ATATTTTCCTCTCAAATTCA+AGG | - | chr1_3:10659790-10659809 | Msa0103490:intron | 25.0% |
| ! | ATGGAACTAGCATTATATAA+GGG | - | chr1_3:10660821-10660840 | Msa0103490:intron | 25.0% |
| ! | AAAGGAACAATTACAATTGA+TGG | + | chr1_3:10660991-10661010 | None:intergenic | 25.0% |
| !!! | GAACTGTAATTGTATTGATT+TGG | + | chr1_3:10661015-10661034 | None:intergenic | 25.0% |
| !!! | AGTTATATTCTTCTAGGATT+CGG | + | chr1_3:10661089-10661108 | None:intergenic | 25.0% |
| !! | AGCTTAATATATAGCTCTTT+TGG | + | chr1_3:10661151-10661170 | None:intergenic | 25.0% |
| ! | GCAATAATGAATTCTTCAAA+GGG | + | chr1_3:10661239-10661258 | None:intergenic | 25.0% |
| !! | GAAATTTTCCACAAATTAGT+AGG | + | chr1_3:10661717-10661736 | None:intergenic | 25.0% |
| ! | GTTTATCCAACATAATTGTT+TGG | - | chr1_3:10661832-10661851 | Msa0103490:CDS | 25.0% |
| !!! | TGGAGTTTTTTAGTTGTTTT+TGG | - | chr1_3:10661913-10661932 | Msa0103490:intron | 25.0% |
| ! | ACTTAAGGAAACTCAAATTT+AGG | + | chr1_3:10661965-10661984 | None:intergenic | 25.0% |
| !! | TTGAGTTTCCTTAAGTATTT+TGG | - | chr1_3:10661969-10661988 | Msa0103490:intron | 25.0% |
| ! | ATTCACATTAACGATATCAA+TGG | + | chr1_3:10662088-10662107 | None:intergenic | 25.0% |
| ! | TACATAGGTCAAAATCAATA+CGG | + | chr1_3:10662145-10662164 | None:intergenic | 25.0% |
| ! | AGTATGCATGTTAATGATAA+TGG | + | chr1_3:10662310-10662329 | None:intergenic | 25.0% |
| !! | ATGTTGACTATGATATGATA+TGG | + | chr1_3:10662518-10662537 | None:intergenic | 25.0% |
| !! | AAAATCATTGAAAGCTTTGA+AGG | + | chr1_3:10662671-10662690 | None:intergenic | 25.0% |
| !!! | GACTACAAACTCTTTTTTAA+AGG | + | chr1_3:10662713-10662732 | None:intergenic | 25.0% |
| ! | ATTAATACAAAAGATCTCAG+AGG | - | chr1_3:10662745-10662764 | Msa0103490:intron | 25.0% |
| ! | TATAGAAGTAAGCTTGAATA+TGG | + | chr1_3:10662814-10662833 | None:intergenic | 25.0% |
| ! | TACTTCTATATGTGAATATC+AGG | - | chr1_3:10662824-10662843 | Msa0103490:intron | 25.0% |
| ! | TATATGTGAATATCAGGATT+TGG | - | chr1_3:10662830-10662849 | Msa0103490:intron | 25.0% |
| ! | ACAAACTAAATATAGTAAGG+TGG | + | chr1_3:10662876-10662895 | None:intergenic | 25.0% |
| ! | GTTTGTATGTAATACAATGA+AGG | - | chr1_3:10663008-10663027 | Msa0103490:intron | 25.0% |
| ! | TATGTTAATTACGATTGTTG+TGG | - | chr1_3:10663147-10663166 | Msa0103490:CDS | 25.0% |
| !!! | ATTATAAATTAAGGTACTGC+TGG | - | chr1_3:10663313-10663332 | Msa0103490:five_prime_UTR | 25.0% |
| !!! | TTATAAATTAAGGTACTGCT+GGG | - | chr1_3:10663314-10663333 | Msa0103490:five_prime_UTR | 25.0% |
| !! | ATATTTGGTCGATAATTTTC+GGG | - | chr1_3:10663432-10663451 | Msa0103490:five_prime_UTR | 25.0% |
| AGTTATTAGGTCAGTGTATT+GGG | + | chr1_3:10656268-10656287 | None:intergenic | 30.0% | |
| ! | AGAGATACCAGTATTTTTCT+TGG | - | chr1_3:10656586-10656605 | Msa0103490:intron | 30.0% |
| ! | GATTGACTTAATTGAGCTTA+TGG | - | chr1_3:10656952-10656971 | Msa0103490:intron | 30.0% |
| ! | GATTTTATGAAAACAGCTCA+TGG | - | chr1_3:10657034-10657053 | Msa0103490:intron | 30.0% |
| TTTAAGCTGTTTATCCAAAC+AGG | - | chr1_3:10657209-10657228 | Msa0103490:intron | 30.0% | |
| TTAAGCTGTTTATCCAAACA+GGG | - | chr1_3:10657210-10657229 | Msa0103490:intron | 30.0% | |
| !! | GCTGTTTTCATATACTATCA+TGG | + | chr1_3:10657334-10657353 | None:intergenic | 30.0% |
| TTTATCCAAACAAGTATCCT+TGG | - | chr1_3:10657464-10657483 | Msa0103490:CDS | 30.0% | |
| TTATCCAAACAAGTATCCTT+GGG | - | chr1_3:10657465-10657484 | Msa0103490:CDS | 30.0% | |
| AGAGCTTATGAAATGTCTAT+TGG | + | chr1_3:10657517-10657536 | None:intergenic | 30.0% | |
| ACTTATTTAAGCATGTCTAC+TGG | + | chr1_3:10657566-10657585 | None:intergenic | 30.0% | |
| ! | TATGTTGACTGCCATTAAAA+TGG | - | chr1_3:10657846-10657865 | Msa0103490:intron | 30.0% |
| CTAAATAATCAACACACAAG+TGG | + | chr1_3:10657940-10657959 | None:intergenic | 30.0% | |
| !! | TTTTAGTTGTGCTGACATAT+TGG | - | chr1_3:10657960-10657979 | Msa0103490:intron | 30.0% |
| ! | TTTAGTTGTGCTGACATATT+GGG | - | chr1_3:10657961-10657980 | Msa0103490:intron | 30.0% |
| GATTAAAACTTGCCTTGTAA+TGG | + | chr1_3:10658117-10658136 | None:intergenic | 30.0% | |
| !! | ATCTTTCATGTTGCTTTGTT+AGG | - | chr1_3:10658134-10658153 | Msa0103490:intron | 30.0% |
| ! | CTTTTATTGTGGTAAAAGCA+AGG | + | chr1_3:10658214-10658233 | None:intergenic | 30.0% |
| !! | CTTGCTTTTACCACAATAAA+AGG | - | chr1_3:10658212-10658231 | Msa0103490:intron | 30.0% |
| ! | TGCTTTTACCACAATAAAAG+GGG | - | chr1_3:10658214-10658233 | Msa0103490:intron | 30.0% |
| GATGGAAAAGAGGAAAATAA+AGG | - | chr1_3:10658242-10658261 | Msa0103490:intron | 30.0% | |
| TGGAAAAGAGGAAAATAAAG+GGG | - | chr1_3:10658244-10658263 | Msa0103490:intron | 30.0% | |
| ! | GAAAATAAAGGGGAGTTTTT+AGG | - | chr1_3:10658254-10658273 | Msa0103490:intron | 30.0% |
| GTTTAGGTCCTTAGATTTAA+AGG | - | chr1_3:10658276-10658295 | Msa0103490:intron | 30.0% | |
| TAAAAGTTCAAACACGTAGT+GGG | + | chr1_3:10658352-10658371 | None:intergenic | 30.0% | |
| TTAAAAGTTCAAACACGTAG+TGG | + | chr1_3:10658353-10658372 | None:intergenic | 30.0% | |
| !!! | TTTTAAAACCAGTAGAAGTG+GGG | + | chr1_3:10658411-10658430 | None:intergenic | 30.0% |
| GAAGGACATTATATTTGTGT+TGG | - | chr1_3:10658470-10658489 | Msa0103490:intron | 30.0% | |
| CTCAACTGATCAGTAAAATT+GGG | - | chr1_3:10658531-10658550 | Msa0103490:intron | 30.0% | |
| CATAGAAACAATGCATTGTA+TGG | - | chr1_3:10658736-10658755 | Msa0103490:intron | 30.0% | |
| AATGCAGGATATCTATTGTT+TGG | - | chr1_3:10658818-10658837 | Msa0103490:intron | 30.0% | |
| GACTGAATATAATAACACTG+AGG | + | chr1_3:10658953-10658972 | None:intergenic | 30.0% | |
| AGTGCTTTATATGCAAGAAT+AGG | + | chr1_3:10659001-10659020 | None:intergenic | 30.0% | |
| GTCATAAACAATCCATAAGT+GGG | + | chr1_3:10659040-10659059 | None:intergenic | 30.0% | |
| TGTCATAAACAATCCATAAG+TGG | + | chr1_3:10659041-10659060 | None:intergenic | 30.0% | |
| CTAGACAAATACATTCTAGT+TGG | - | chr1_3:10659087-10659106 | Msa0103490:intron | 30.0% | |
| ! | AGACAAATACATTCTAGTTG+GGG | - | chr1_3:10659089-10659108 | Msa0103490:intron | 30.0% |
| TTAATGGGATATACTTAGCA+TGG | - | chr1_3:10659195-10659214 | Msa0103490:intron | 30.0% | |
| AAAAGTAAGAATCTAGAGAG+AGG | - | chr1_3:10659320-10659339 | Msa0103490:intron | 30.0% | |
| AAAGTAAGAATCTAGAGAGA+GGG | - | chr1_3:10659321-10659340 | Msa0103490:intron | 30.0% | |
| TTTCTTCTTTGTATCATCTG+TGG | + | chr1_3:10659465-10659484 | None:intergenic | 30.0% | |
| ! | TTCTTTCTGTTCTTTTCTCA+AGG | + | chr1_3:10659521-10659540 | None:intergenic | 30.0% |
| !! | TACTTTAAGTGTGTCATTTG+TGG | + | chr1_3:10659594-10659613 | None:intergenic | 30.0% |
| CAATACTATATTCCATCACA+TGG | + | chr1_3:10659747-10659766 | None:intergenic | 30.0% | |
| AGTATTGTAGCATATTAAGC+AGG | - | chr1_3:10659760-10659779 | Msa0103490:intron | 30.0% | |
| ATATTATCACCTAACAGAAG+TGG | - | chr1_3:10660016-10660035 | Msa0103490:intron | 30.0% | |
| AAGAGAGTTGTGTTCTTTAA+CGG | + | chr1_3:10660466-10660485 | None:intergenic | 30.0% | |
| ! | TCTCTTTTGTCCGTTAAAAA+AGG | - | chr1_3:10660480-10660499 | Msa0103490:intron | 30.0% |
| ! | TTTTGTCCGTTAAAAAAGGA+TGG | - | chr1_3:10660484-10660503 | Msa0103490:intron | 30.0% |
| AATGAGATCATCAGTTAAAG+AGG | - | chr1_3:10660592-10660611 | Msa0103490:intron | 30.0% | |
| AAACAATGACAGTTCACATT+TGG | - | chr1_3:10660653-10660672 | Msa0103490:intron | 30.0% | |
| AACAATGACAGTTCACATTT+GGG | - | chr1_3:10660654-10660673 | Msa0103490:intron | 30.0% | |
| AAAACGTAAGAAAGACATGA+AGG | - | chr1_3:10660756-10660775 | Msa0103490:intron | 30.0% | |
| AAACGTAAGAAAGACATGAA+GGG | - | chr1_3:10660757-10660776 | Msa0103490:intron | 30.0% | |
| CATGGAACTAGCATTATATA+AGG | - | chr1_3:10660820-10660839 | Msa0103490:intron | 30.0% | |
| TGGAACTAGCATTATATAAG+GGG | - | chr1_3:10660822-10660841 | Msa0103490:intron | 30.0% | |
| GGCAATAATGAATTCTTCAA+AGG | + | chr1_3:10661240-10661259 | None:intergenic | 30.0% | |
| ! | TTGTTAAGTATGCCATTTCT+GGG | - | chr1_3:10661267-10661286 | Msa0103490:intron | 30.0% |
| AACTAAAACGTGAGTGTTTA+GGG | + | chr1_3:10661655-10661674 | None:intergenic | 30.0% | |
| AAACACAAGTACACAACAAA+AGG | + | chr1_3:10661816-10661835 | None:intergenic | 30.0% | |
| CAAATCCCAAACAATTATGT+TGG | + | chr1_3:10661841-10661860 | None:intergenic | 30.0% | |
| !! | TGTGTTATGGATTTGCTATT+TGG | - | chr1_3:10661893-10661912 | Msa0103490:intron | 30.0% |
| AAACACAGCCAAAATACTTA+AGG | + | chr1_3:10661980-10661999 | None:intergenic | 30.0% | |
| TGGACATAAAATAATGCATG+TGG | + | chr1_3:10662048-10662067 | None:intergenic | 30.0% | |
| AAATCAATACGGTAATACGA+CGG | + | chr1_3:10662134-10662153 | None:intergenic | 30.0% | |
| ! | TAACATTCATGGTCTCATTT+TGG | - | chr1_3:10662545-10662564 | Msa0103490:intron | 30.0% |
| ! | AACATTCATGGTCTCATTTT+GGG | - | chr1_3:10662546-10662565 | Msa0103490:intron | 30.0% |
| ATGAATACAAAAGATCTCAG+AGG | - | chr1_3:10662644-10662663 | Msa0103490:intron | 30.0% | |
| ! | TCTTGCTTTGAATATCAACT+GGG | + | chr1_3:10662791-10662810 | None:intergenic | 30.0% |
| GTGTACAGTCAAGAAAATAT+TGG | + | chr1_3:10662915-10662934 | None:intergenic | 30.0% | |
| ATGAAAAAGTAAGTTCACAG+TGG | - | chr1_3:10662972-10662991 | Msa0103490:intron | 30.0% | |
| TTGACAGTTATCTACGTAAA+TGG | - | chr1_3:10663072-10663091 | Msa0103490:intron | 30.0% | |
| AGACAAAGAAAATTCTGCTA+TGG | - | chr1_3:10663226-10663245 | Msa0103490:CDS | 30.0% | |
| !! | TATAAATTAAGGTACTGCTG+GGG | - | chr1_3:10663315-10663334 | Msa0103490:five_prime_UTR | 30.0% |
| TATATGAACCAAAGTTGGAA+TGG | + | chr1_3:10663415-10663434 | None:intergenic | 30.0% | |
| CCAAATATATGAACCAAAGT+TGG | + | chr1_3:10663420-10663439 | None:intergenic | 30.0% | |
| ! | CCAACTTTGGTTCATATATT+TGG | - | chr1_3:10663417-10663436 | Msa0103490:five_prime_UTR | 30.0% |
| GAGTTATTAGGTCAGTGTAT+TGG | + | chr1_3:10656269-10656288 | None:intergenic | 35.0% | |
| ACAGTTTCGTATTTGCTTGA+CGG | + | chr1_3:10656387-10656406 | None:intergenic | 35.0% | |
| CTCATTCTGTAATGCAATTG+TGG | + | chr1_3:10656427-10656446 | None:intergenic | 35.0% | |
| CAAGATGACGTTCGAAATAT+CGG | + | chr1_3:10656525-10656544 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATTAGCTATCT+TGG | + | chr1_3:10657100-10657119 | None:intergenic | 35.0% |
| GAGCTTATGGAAACAACTTA+TGG | - | chr1_3:10657277-10657296 | Msa0103490:CDS | 35.0% | |
| GCTTATAGAGATATGTTGGA+AGG | + | chr1_3:10657308-10657327 | None:intergenic | 35.0% | |
| GAGAGCTTATAGAGATATGT+TGG | + | chr1_3:10657312-10657331 | None:intergenic | 35.0% | |
| CTATGATAAGCGATTATGCT+AGG | - | chr1_3:10657426-10657445 | Msa0103490:CDS | 35.0% | |
| CTTATTTACACAAACTCCCA+AGG | + | chr1_3:10657484-10657503 | None:intergenic | 35.0% | |
| CTTGGGAGTTTGTGTAAATA+AGG | - | chr1_3:10657482-10657501 | Msa0103490:CDS | 35.0% | |
| GTTATTCACGATTGGGAATT+CGG | - | chr1_3:10657620-10657639 | Msa0103490:intron | 35.0% | |
| TTATTCACGATTGGGAATTC+GGG | - | chr1_3:10657621-10657640 | Msa0103490:intron | 35.0% | |
| ! | AATTCGGGAGTATACTAAAG+TGG | - | chr1_3:10657636-10657655 | Msa0103490:intron | 35.0% |
| !!! | GGCTGTTTCTCTTTTTGATT+AGG | - | chr1_3:10657657-10657676 | Msa0103490:intron | 35.0% |
| TCTATTCTGCGTTTGCATTT+GGG | - | chr1_3:10657758-10657777 | Msa0103490:intron | 35.0% | |
| CTAACAATCGGAGAACAAAT+CGG | + | chr1_3:10658041-10658060 | None:intergenic | 35.0% | |
| !!! | AAAGGGGAGTTTTTAGGTTT+AGG | - | chr1_3:10658260-10658279 | Msa0103490:intron | 35.0% |
| AAAAGTTCAAACACGTAGTG+GGG | + | chr1_3:10658351-10658370 | None:intergenic | 35.0% | |
| TAAAATTCTTCCTGTTCCTG+TGG | - | chr1_3:10658426-10658445 | Msa0103490:intron | 35.0% | |
| ATAATGTCCTTCAAAGCAGT+AGG | + | chr1_3:10658462-10658481 | None:intergenic | 35.0% | |
| GCTCAACTGATCAGTAAAAT+TGG | - | chr1_3:10658530-10658549 | Msa0103490:intron | 35.0% | |
| CAAATCAATCATTCCAGAAC+TGG | + | chr1_3:10658617-10658636 | None:intergenic | 35.0% | |
| ATCTATTGTTTGGATGCTGA+CGG | - | chr1_3:10658828-10658847 | Msa0103490:intron | 35.0% | |
| AATAGAACTTTGCCCACTTA+TGG | - | chr1_3:10659025-10659044 | Msa0103490:intron | 35.0% | |
| CAATTCAGAAAAGCAACACT+AGG | + | chr1_3:10659159-10659178 | None:intergenic | 35.0% | |
| CAATGTCATTAAGTGATAGG+AGG | - | chr1_3:10659286-10659305 | Msa0103490:intron | 35.0% | |
| AAGTAAGAATCTAGAGAGAG+GGG | - | chr1_3:10659322-10659341 | Msa0103490:intron | 35.0% | |
| GTGATAGACTGTATATGTGA+AGG | - | chr1_3:10659354-10659373 | Msa0103490:intron | 35.0% | |
| AGGTTGTTTAGTGTTCTGAT+AGG | - | chr1_3:10659374-10659393 | Msa0103490:intron | 35.0% | |
| TTATTGTTAGCCAGTTGGTT+TGG | - | chr1_3:10659401-10659420 | Msa0103490:intron | 35.0% | |
| TATGATAGAACCAAACCAAC+TGG | + | chr1_3:10659414-10659433 | None:intergenic | 35.0% | |
| AAATGCCCTTTCTGTTATTC+CGG | - | chr1_3:10659648-10659667 | Msa0103490:intron | 35.0% | |
| ACTCATTCACTTAAACTAGC+AGG | + | chr1_3:10659706-10659725 | None:intergenic | 35.0% | |
| TCTATGACCTTGAATTTGAG+AGG | + | chr1_3:10659800-10659819 | None:intergenic | 35.0% | |
| CAATCTTCACACTAAACTCA+GGG | + | chr1_3:10659844-10659863 | None:intergenic | 35.0% | |
| GTGAAGATTGCAGAAACATT+TGG | - | chr1_3:10659854-10659873 | Msa0103490:intron | 35.0% | |
| GCAAGAATATGACACAATTG+CGG | - | chr1_3:10659916-10659935 | Msa0103490:intron | 35.0% | |
| GATCTGAGTTCATTCTTTGT+TGG | + | chr1_3:10659963-10659982 | None:intergenic | 35.0% | |
| AAACCTTGTTACAAAGCACA+TGG | + | chr1_3:10659985-10660004 | None:intergenic | 35.0% | |
| ATACAGTTGCTGAAATCATC+TGG | + | chr1_3:10660068-10660087 | None:intergenic | 35.0% | |
| CTAGCAACCAATAGACATTT+GGG | - | chr1_3:10660125-10660144 | Msa0103490:intron | 35.0% | |
| TTGCTCGTGTTATATGTTTG+AGG | + | chr1_3:10660151-10660170 | None:intergenic | 35.0% | |
| CAAACATATAACACGAGCAA+AGG | - | chr1_3:10660151-10660170 | Msa0103490:intron | 35.0% | |
| CATGGAGTGATTTATGATGA+TGG | - | chr1_3:10660226-10660245 | Msa0103490:intron | 35.0% | |
| ATGAGTGATAAGTGTCCTTT+AGG | - | chr1_3:10660268-10660287 | Msa0103490:intron | 35.0% | |
| GTCAATTCTTCATTGCCTAA+AGG | + | chr1_3:10660286-10660305 | None:intergenic | 35.0% | |
| CTTGAACGTTTCAACCATAT+GGG | - | chr1_3:10660424-10660443 | Msa0103490:intron | 35.0% | |
| AGAGAGTTGTGTTCTTTAAC+GGG | + | chr1_3:10660465-10660484 | None:intergenic | 35.0% | |
| !!! | ATGGCTCCATCCTTTTTTAA+CGG | + | chr1_3:10660493-10660512 | None:intergenic | 35.0% |
| TAAAAAAGGATGGAGCCATT+TGG | - | chr1_3:10660494-10660513 | Msa0103490:intron | 35.0% | |
| GGAATACTATTTCAGTTCTG+AGG | + | chr1_3:10660525-10660544 | None:intergenic | 35.0% | |
| CTCTTTGCCTTGAAATTGTT+GGG | + | chr1_3:10660557-10660576 | None:intergenic | 35.0% | |
| ACTCTTTGCCTTGAAATTGT+TGG | + | chr1_3:10660558-10660577 | None:intergenic | 35.0% | |
| GGCAAAGAGTGAATTAAACT+TGG | - | chr1_3:10660568-10660587 | Msa0103490:intron | 35.0% | |
| TAGAAATGCTGATGAGCAAT+TGG | - | chr1_3:10660687-10660706 | Msa0103490:intron | 35.0% | |
| AGAAATGCTGATGAGCAATT+GGG | - | chr1_3:10660688-10660707 | Msa0103490:intron | 35.0% | |
| TGATAAACTCTCCACACTTT+GGG | + | chr1_3:10660733-10660752 | None:intergenic | 35.0% | |
| GGAACTAGCATTATATAAGG+GGG | - | chr1_3:10660823-10660842 | Msa0103490:intron | 35.0% | |
| AATTCACATTACGTGCATTG+TGG | - | chr1_3:10660891-10660910 | Msa0103490:CDS | 35.0% | |
| ATTCACATTACGTGCATTGT+GGG | - | chr1_3:10660892-10660911 | Msa0103490:CDS | 35.0% | |
| GGCATACTTAACAACTCAAT+GGG | + | chr1_3:10661261-10661280 | None:intergenic | 35.0% | |
| TGGCATACTTAACAACTCAA+TGG | + | chr1_3:10661262-10661281 | None:intergenic | 35.0% | |
| ! | GTTGTTAAGTATGCCATTTC+TGG | - | chr1_3:10661266-10661285 | Msa0103490:intron | 35.0% |
| ! | TGCAGCAAATTCCTTTTTAC+CGG | + | chr1_3:10661363-10661382 | None:intergenic | 35.0% |
| !! | ATTTCTGTTTCTGTTCATGG+CGG | + | chr1_3:10661538-10661557 | None:intergenic | 35.0% |
| CCATGAACAGAAACAGAAAT+CGG | - | chr1_3:10661538-10661557 | Msa0103490:intron | 35.0% | |
| CAACTAAAACGTGAGTGTTT+AGG | + | chr1_3:10661656-10661675 | None:intergenic | 35.0% | |
| AGTTGTAATTAAGCCTGCAA+TGG | - | chr1_3:10661671-10661690 | Msa0103490:CDS | 35.0% | |
| CACAAATTAGTAGGCATAGT+GGG | + | chr1_3:10661708-10661727 | None:intergenic | 35.0% | |
| GCATGTACGACTTTATGTTA+TGG | - | chr1_3:10661935-10661954 | Msa0103490:intron | 35.0% | |
| TGGCAATACATAAACTCTCT+TGG | + | chr1_3:10662068-10662087 | None:intergenic | 35.0% | |
| AATCAATACGGTAATACGAC+GGG | + | chr1_3:10662133-10662152 | None:intergenic | 35.0% | |
| GGCAAAATGGAAATGTACAT+AGG | + | chr1_3:10662160-10662179 | None:intergenic | 35.0% | |
| ! | TATTTTGCCGTCATCATTCA+TGG | + | chr1_3:10662203-10662222 | None:intergenic | 35.0% |
| ACTTCACAAGAACTACATCT+TGG | - | chr1_3:10662327-10662346 | Msa0103490:intron | 35.0% | |
| CTAATATCTCTTTACAAGCC+TGG | - | chr1_3:10662421-10662440 | Msa0103490:intron | 35.0% | |
| ACATTGCAACGGAATTAAAG+AGG | - | chr1_3:10662488-10662507 | Msa0103490:intron | 35.0% | |
| ! | GTCTTGCTTTGAATATCAAC+TGG | + | chr1_3:10662792-10662811 | None:intergenic | 35.0% |
| ATTACGATTGTTGTGGTTTC+AGG | - | chr1_3:10663154-10663173 | Msa0103490:CDS | 35.0% | |
| CAAAGAAAATTCTGCTATGG+AGG | - | chr1_3:10663229-10663248 | Msa0103490:CDS | 35.0% | |
| TCTTATTGCCATTCCAACTT+TGG | - | chr1_3:10663404-10663423 | Msa0103490:five_prime_UTR | 35.0% | |
| AGTGGGAAAGGAAAAACTTC+TGG | + | chr1_3:10656310-10656329 | None:intergenic | 40.0% | |
| AGCAAATACGAAACTGTGTG+TGG | - | chr1_3:10656390-10656409 | Msa0103490:three_prime_UTR | 40.0% | |
| GCTGAATCTATTCGTTCTGA+TGG | - | chr1_3:10656544-10656563 | Msa0103490:intron | 40.0% | |
| ! | GTATCTCTAGCTTCTCTAAG+CGG | + | chr1_3:10656574-10656593 | None:intergenic | 40.0% |
| AACTCCCAAGGATACTTGTT+TGG | + | chr1_3:10657472-10657491 | None:intergenic | 40.0% | |
| TCTTGTGAAGATTGGATCCA+CGG | - | chr1_3:10657707-10657726 | Msa0103490:intron | 40.0% | |
| GTCTATTCTGCGTTTGCATT+TGG | - | chr1_3:10657757-10657776 | Msa0103490:intron | 40.0% | |
| ! | ACAAGTGGCAAAGTTGGTTA+GGG | + | chr1_3:10657925-10657944 | None:intergenic | 40.0% |
| ! | CGATTTGTTCTCCGATTGTT+AGG | - | chr1_3:10658039-10658058 | Msa0103490:intron | 40.0% |
| AACTTGCCTTGTAATGGTGT+CGG | + | chr1_3:10658111-10658130 | None:intergenic | 40.0% | |
| TACCACAATAAAAGGGGACT+TGG | - | chr1_3:10658220-10658239 | Msa0103490:intron | 40.0% | |
| ! | ATCCAAGTCCCCTTTTATTG+TGG | + | chr1_3:10658225-10658244 | None:intergenic | 40.0% |
| ACAATAAAAGGGGACTTGGA+TGG | - | chr1_3:10658224-10658243 | Msa0103490:intron | 40.0% | |
| CACTTTGGTAGAGTTCAAAG+AGG | + | chr1_3:10658327-10658346 | None:intergenic | 40.0% | |
| TGATTTGAGAGAGTTGTCCT+TGG | - | chr1_3:10658630-10658649 | Msa0103490:intron | 40.0% | |
| ACAATGCATTGTATGGTGTG+AGG | - | chr1_3:10658743-10658762 | Msa0103490:intron | 40.0% | |
| TCTATTGTTTGGATGCTGAC+GGG | - | chr1_3:10658829-10658848 | Msa0103490:intron | 40.0% | |
| TTCAGAAAAGCAACACTAGG+AGG | + | chr1_3:10659156-10659175 | None:intergenic | 40.0% | |
| GTCTGTTATTGTTAGCCAGT+TGG | - | chr1_3:10659396-10659415 | Msa0103490:intron | 40.0% | |
| CATTCACTTAAACTAGCAGG+TGG | + | chr1_3:10659703-10659722 | None:intergenic | 40.0% | |
| ATAGTAGAGAGACCATGTGA+TGG | - | chr1_3:10659732-10659751 | Msa0103490:intron | 40.0% | |
| GGTCATAGAGTAACCTAAAG+AGG | - | chr1_3:10659811-10659830 | Msa0103490:intron | 40.0% | |
| GCAATCTTCACACTAAACTC+AGG | + | chr1_3:10659845-10659864 | None:intergenic | 40.0% | |
| TTCATTCTTTGTTGGAGAGG+AGG | + | chr1_3:10659955-10659974 | None:intergenic | 40.0% | |
| GAGTTCATTCTTTGTTGGAG+AGG | + | chr1_3:10659958-10659977 | None:intergenic | 40.0% | |
| GATCCATGTGCTTTGTAACA+AGG | - | chr1_3:10659979-10659998 | Msa0103490:intron | 40.0% | |
| ATTTCTGCTCCACTTCTGTT+AGG | + | chr1_3:10660028-10660047 | None:intergenic | 40.0% | |
| AAGTGGAGCAGAAATTTCCT+TGG | - | chr1_3:10660033-10660052 | Msa0103490:intron | 40.0% | |
| GGTTGAATAATAGCACAGCA+TGG | + | chr1_3:10660094-10660113 | None:intergenic | 40.0% | |
| ! | CCAAATGTCTATTGGTTGCT+AGG | + | chr1_3:10660127-10660146 | None:intergenic | 40.0% |
| CCTAGCAACCAATAGACATT+TGG | - | chr1_3:10660124-10660143 | Msa0103490:intron | 40.0% | |
| ! | TTTGAGGCCCAAATGTCTAT+TGG | + | chr1_3:10660135-10660154 | None:intergenic | 40.0% |
| ! | CATGTTTTCCTTCTGCAACA+TGG | + | chr1_3:10660210-10660229 | None:intergenic | 40.0% |
| CATGTTGCAGAAGGAAAACA+TGG | - | chr1_3:10660208-10660227 | Msa0103490:intron | 40.0% | |
| !! | GAGTGATTTATGATGATGGC+TGG | - | chr1_3:10660230-10660249 | Msa0103490:intron | 40.0% |
| ATGCTGCAAAGTTCCAACAA+TGG | - | chr1_3:10660350-10660369 | Msa0103490:intron | 40.0% | |
| GCTTGAACGTTTCAACCATA+TGG | - | chr1_3:10660423-10660442 | Msa0103490:intron | 40.0% | |
| ATTTCCAGTTTCCACCCATA+TGG | + | chr1_3:10660441-10660460 | None:intergenic | 40.0% | |
| GAGAGTTGTGTTCTTTAACG+GGG | + | chr1_3:10660464-10660483 | None:intergenic | 40.0% | |
| TTTGCCTTGAAATTGTTGGG+TGG | + | chr1_3:10660554-10660573 | None:intergenic | 40.0% | |
| ! | TGGGCTTTTGACCAAAATGA+AGG | + | chr1_3:10660714-10660733 | None:intergenic | 40.0% |
| CTGATAAACTCTCCACACTT+TGG | + | chr1_3:10660734-10660753 | None:intergenic | 40.0% | |
| !! | ACAATCTCCCAAAAGCACTA+AGG | + | chr1_3:10660920-10660939 | None:intergenic | 40.0% |
| GATGGGTCTCAAAATGTAAG+TGG | + | chr1_3:10661061-10661080 | None:intergenic | 40.0% | |
| ! | TCTAGGATTCGGTTTCTGAT+GGG | + | chr1_3:10661078-10661097 | None:intergenic | 40.0% |
| !! | TTCTAGGATTCGGTTTCTGA+TGG | + | chr1_3:10661079-10661098 | None:intergenic | 40.0% |
| GGGCTCAGTTATATTCTTCT+AGG | + | chr1_3:10661095-10661114 | None:intergenic | 40.0% | |
| !! | GGTAAAAAGGAATTTGCTGC+AGG | - | chr1_3:10661362-10661381 | Msa0103490:intron | 40.0% |
| TAAACTTCCATGGTATCCAC+AGG | + | chr1_3:10661456-10661475 | None:intergenic | 40.0% | |
| GCATGCGATTTAAACTTCCA+TGG | + | chr1_3:10661466-10661485 | None:intergenic | 40.0% | |
| TGGAAGTTTAAATCGCATGC+AGG | - | chr1_3:10661466-10661485 | Msa0103490:intron | 40.0% | |
| !! | CCGATTTCTGTTTCTGTTCA+TGG | + | chr1_3:10661541-10661560 | None:intergenic | 40.0% |
| TGAACAGAAACAGAAATCGG+TGG | - | chr1_3:10661541-10661560 | Msa0103490:intron | 40.0% | |
| GAACAGAAACAGAAATCGGT+GGG | - | chr1_3:10661542-10661561 | Msa0103490:intron | 40.0% | |
| CCACAAATTAGTAGGCATAG+TGG | + | chr1_3:10661709-10661728 | None:intergenic | 40.0% | |
| CCACTATGCCTACTAATTTG+TGG | - | chr1_3:10661706-10661725 | Msa0103490:intron | 40.0% | |
| CAAAAGGTTGCACAAGATGA+TGG | + | chr1_3:10661800-10661819 | None:intergenic | 40.0% | |
| ! | ACGGGATGACAGCAATTTTA+AGG | + | chr1_3:10662115-10662134 | None:intergenic | 40.0% |
| ! | AGGAATTTGCACTGGCAAAA+TGG | + | chr1_3:10662173-10662192 | None:intergenic | 40.0% |
| GTACTCATGTCTGATGAAGA+TGG | - | chr1_3:10662223-10662242 | Msa0103490:intron | 40.0% | |
| GACAAAGGAGCAAGTCAATA+AGG | - | chr1_3:10662255-10662274 | Msa0103490:intron | 40.0% | |
| AGCAAGTCAATAAGGAGAAG+AGG | - | chr1_3:10662263-10662282 | Msa0103490:intron | 40.0% | |
| ATGGATTCTTCTTCTGCAGT+AGG | + | chr1_3:10662358-10662377 | None:intergenic | 40.0% | |
| TGCAGAAGAAGAATCCATAG+TGG | - | chr1_3:10662360-10662379 | Msa0103490:intron | 40.0% | |
| ATCCAGAACGATTGTCACAT+GGG | + | chr1_3:10662389-10662408 | None:intergenic | 40.0% | |
| TATCCAGAACGATTGTCACA+TGG | + | chr1_3:10662390-10662409 | None:intergenic | 40.0% | |
| ! | ACAATCGTTCTGGATACATC+TGG | - | chr1_3:10662394-10662413 | Msa0103490:intron | 40.0% |
| ATATCTCTTTACAAGCCTGG+TGG | - | chr1_3:10662424-10662443 | Msa0103490:intron | 40.0% | |
| TATCTCTTTACAAGCCTGGT+GGG | - | chr1_3:10662425-10662444 | Msa0103490:intron | 40.0% | |
| ! | TACCTGGATAGCAGAAGTAT+AGG | + | chr1_3:10662461-10662480 | None:intergenic | 40.0% |
| TTGCAATGTGTAAGCTTACC+TGG | + | chr1_3:10662477-10662496 | None:intergenic | 40.0% | |
| GGTAAGCTTACACATTGCAA+CGG | - | chr1_3:10662477-10662496 | Msa0103490:intron | 40.0% | |
| ACCATTCCATTCTAACCGAA+TGG | - | chr1_3:10663479-10663498 | Msa0103490:five_prime_UTR | 40.0% | |
| CCATTCCATTCTAACCGAAT+GGG | - | chr1_3:10663480-10663499 | Msa0103490:five_prime_UTR | 40.0% | |
| TTTCTAACTCCTCTCCCATT+CGG | + | chr1_3:10663497-10663516 | None:intergenic | 40.0% | |
| AGATGAGGGAGGGAGTTATT+AGG | + | chr1_3:10656281-10656300 | None:intergenic | 45.0% | |
| ACTTCTGGCGAAGAAGATGA+GGG | + | chr1_3:10656295-10656314 | None:intergenic | 45.0% | |
| AACTTCTGGCGAAGAAGATG+AGG | + | chr1_3:10656296-10656315 | None:intergenic | 45.0% | |
| GTTTCGTATTTGCTTGACGG+TGG | + | chr1_3:10656384-10656403 | None:intergenic | 45.0% | |
| TGTTCCAAATGCTGCTGCAA+CGG | - | chr1_3:10656447-10656466 | Msa0103490:three_prime_UTR | 45.0% | |
| GGAGGATTTGTCGTCTGAAA+TGG | - | chr1_3:10656468-10656487 | Msa0103490:exon | 45.0% | |
| TGACGTTCGAAATATCGGAG+CGG | + | chr1_3:10656520-10656539 | None:intergenic | 45.0% | |
| ATTGAGCTTATGGGCCTGTT+TGG | - | chr1_3:10656962-10656981 | Msa0103490:intron | 45.0% | |
| TGCATAAGCACTTGTGACAC+TGG | - | chr1_3:10657010-10657029 | Msa0103490:intron | 45.0% | |
| ACAGCTCATGGCATGTTCAT+AGG | - | chr1_3:10657046-10657065 | Msa0103490:intron | 45.0% | |
| ! | GTGCTGTTGCATCTGCTAAT+GGG | - | chr1_3:10657679-10657698 | Msa0103490:intron | 45.0% |
| GGAAGTTATGACTCCTTCCT+TGG | - | chr1_3:10657867-10657886 | Msa0103490:intron | 45.0% | |
| ! | CACAAGTGGCAAAGTTGGTT+AGG | + | chr1_3:10657926-10657945 | None:intergenic | 45.0% |
| CAACACACAAGTGGCAAAGT+TGG | + | chr1_3:10657931-10657950 | None:intergenic | 45.0% | |
| ! | GAGAACAAATCGGAGGCATA+TGG | + | chr1_3:10658031-10658050 | None:intergenic | 45.0% |
| ACAATCGGAGAACAAATCGG+AGG | + | chr1_3:10658038-10658057 | None:intergenic | 45.0% | |
| GACAACTGCTTTGACACAAC+CGG | + | chr1_3:10658089-10658108 | None:intergenic | 45.0% | |
| AGTTGTCCGACACCATTACA+AGG | - | chr1_3:10658102-10658121 | Msa0103490:intron | 45.0% | |
| CAAGGTTCATAGTGCGACTT+TGG | + | chr1_3:10658196-10658215 | None:intergenic | 45.0% | |
| AAAACCAGTAGAAGTGGGGT+GGG | + | chr1_3:10658407-10658426 | None:intergenic | 45.0% | |
| TAAAACCAGTAGAAGTGGGG+TGG | + | chr1_3:10658408-10658427 | None:intergenic | 45.0% | |
| TTTCCTGCCTACTGCTTTGA+AGG | - | chr1_3:10658452-10658471 | Msa0103490:intron | 45.0% | |
| TTGAGAGAGTTGTCCTTGGT+TGG | - | chr1_3:10658634-10658653 | Msa0103490:intron | 45.0% | |
| AGAAAAGCAACACTAGGAGG+TGG | + | chr1_3:10659153-10659172 | None:intergenic | 45.0% | |
| TAAGAATCTAGAGAGAGGGG+AGG | - | chr1_3:10659325-10659344 | Msa0103490:intron | 45.0% | |
| AAGAATCTAGAGAGAGGGGA+GGG | - | chr1_3:10659326-10659345 | Msa0103490:intron | 45.0% | |
| TCAGGGTTCTTGACCTCTTT+AGG | + | chr1_3:10659827-10659846 | None:intergenic | 45.0% | |
| TGCAGAAACATTTGGCAGAG+AGG | - | chr1_3:10659862-10659881 | Msa0103490:intron | 45.0% | |
| GCAGAAACATTTGGCAGAGA+GGG | - | chr1_3:10659863-10659882 | Msa0103490:intron | 45.0% | |
| GCAGAGAGGGATTGATTAGA+GGG | - | chr1_3:10659876-10659895 | Msa0103490:intron | 45.0% | |
| TCATCTGGATTACGAGACCA+AGG | + | chr1_3:10660053-10660072 | None:intergenic | 45.0% | |
| !! | TTCTGCAACATGGACTAGGT+TGG | + | chr1_3:10660200-10660219 | None:intergenic | 45.0% |
| AACCTAGTCCATGTTGCAGA+AGG | - | chr1_3:10660199-10660218 | Msa0103490:intron | 45.0% | |
| TTCCTTCTGCAACATGGACT+AGG | + | chr1_3:10660204-10660223 | None:intergenic | 45.0% | |
| TTATGCGGCATGTCCATTGT+TGG | + | chr1_3:10660366-10660385 | None:intergenic | 45.0% | |
| AATGGACATGCCGCATAAGT+GGG | - | chr1_3:10660368-10660387 | Msa0103490:intron | 45.0% | |
| TTTCTACGAGCCCACTTATG+CGG | + | chr1_3:10660381-10660400 | None:intergenic | 45.0% | |
| ACGTTCAAGCTCATCAAGCA+TGG | + | chr1_3:10660413-10660432 | None:intergenic | 45.0% | |
| GAACGTTTCAACCATATGGG+TGG | - | chr1_3:10660427-10660446 | Msa0103490:intron | 45.0% | |
| TCAACCATATGGGTGGAAAC+TGG | - | chr1_3:10660434-10660453 | Msa0103490:intron | 45.0% | |
| ACGACCACCCAACAATTTCA+AGG | - | chr1_3:10660547-10660566 | Msa0103490:intron | 45.0% | |
| ! | GAGCAATTGGGCCTTCATTT+TGG | - | chr1_3:10660700-10660719 | Msa0103490:intron | 45.0% |
| TTGGTCAAAAGCCCAAAGTG+TGG | - | chr1_3:10660719-10660738 | Msa0103490:intron | 45.0% | |
| AGACATGAAGGGTAATGACG+TGG | - | chr1_3:10660768-10660787 | Msa0103490:intron | 45.0% | |
| ATGAAGGGTAATGACGTGGA+GGG | - | chr1_3:10660772-10660791 | Msa0103490:intron | 45.0% | |
| CATGGAATGCATGTGATGCA+TGG | - | chr1_3:10660802-10660821 | Msa0103490:intron | 45.0% | |
| GCATTATATAAGGGGGACAG+TGG | - | chr1_3:10660830-10660849 | Msa0103490:intron | 45.0% | |
| ! | AAGTATGCCATTTCTGGGTG+AGG | - | chr1_3:10661272-10661291 | Msa0103490:intron | 45.0% |
| GAGAAAATGGCACCTGTTGT+TGG | - | chr1_3:10661319-10661338 | Msa0103490:intron | 45.0% | |
| AAAATGGCACCTGTTGTTGG+AGG | - | chr1_3:10661322-10661341 | Msa0103490:intron | 45.0% | |
| TGTTGGAGGCAATGGTGATT+AGG | - | chr1_3:10661336-10661355 | Msa0103490:intron | 45.0% | |
| GGTGATTAGGACCGGTAAAA+AGG | - | chr1_3:10661349-10661368 | Msa0103490:intron | 45.0% | |
| GTCTGTTCAGGTGTTTGAAG+TGG | - | chr1_3:10661404-10661423 | Msa0103490:intron | 45.0% | |
| GGTGAAAAACTAGCCATTGC+AGG | + | chr1_3:10661687-10661706 | None:intergenic | 45.0% | |
| GCAACGAATCTGTGTGTACT+GGG | + | chr1_3:10661739-10661758 | None:intergenic | 45.0% | |
| TGCAACGAATCTGTGTGTAC+TGG | + | chr1_3:10661740-10661759 | None:intergenic | 45.0% | |
| !! | GGTTGCACAAGATGATGGAA+AGG | + | chr1_3:10661795-10661814 | None:intergenic | 45.0% |
| TCATCATTCATGGCTACAGC+AGG | + | chr1_3:10662193-10662212 | None:intergenic | 45.0% | |
| GCTGTAGCCATGAATGATGA+CGG | - | chr1_3:10662193-10662212 | Msa0103490:intron | 45.0% | |
| AGATGGACAGAAGCAGACAA+AGG | - | chr1_3:10662240-10662259 | Msa0103490:intron | 45.0% | |
| TGTCACATGGGTTTCCACTA+TGG | + | chr1_3:10662377-10662396 | None:intergenic | 45.0% | |
| AACCCATGTGACAATCGTTC+TGG | - | chr1_3:10662384-10662403 | Msa0103490:intron | 45.0% | |
| ! | GCAGAAGTATAGGCAAGAAC+TGG | + | chr1_3:10662451-10662470 | None:intergenic | 45.0% |
| TGCCTATACTTCTGCTATCC+AGG | - | chr1_3:10662456-10662475 | Msa0103490:intron | 45.0% | |
| !! | GAGGTCCTTTGAAGCTTTCA+AGG | - | chr1_3:10662764-10662783 | Msa0103490:intron | 45.0% |
| TGGGTCCTTGAAAGCTTCAA+AGG | + | chr1_3:10662772-10662791 | None:intergenic | 45.0% | |
| CTTCACTCTTTGCCTAGTCA+AGG | + | chr1_3:10663189-10663208 | None:intergenic | 45.0% | |
| CTTGACTAGGCAAAGAGTGA+AGG | - | chr1_3:10663187-10663206 | Msa0103490:CDS | 45.0% | |
| CCCATTCGGTTAGAATGGAA+TGG | + | chr1_3:10663483-10663502 | None:intergenic | 45.0% | |
| !!! | ATAGTTTTTATTTAATTAAA+AGG | - | chr1_3:10659225-10659244 | Msa0103490:intron | 5.0% |
| GATCTATTCTCGGACGAACC+CGG | - | chr1_3:10656218-10656237 | Msa0103490:three_prime_UTR | 50.0% | |
| ! | TTGGGCTCAACGGGTTTGTT+GGG | + | chr1_3:10656250-10656269 | None:intergenic | 50.0% |
| ! | ATTGGGCTCAACGGGTTTGT+TGG | + | chr1_3:10656251-10656270 | None:intergenic | 50.0% |
| GTCAGTGTATTGGGCTCAAC+GGG | + | chr1_3:10656259-10656278 | None:intergenic | 50.0% | |
| GGTCAGTGTATTGGGCTCAA+CGG | + | chr1_3:10656260-10656279 | None:intergenic | 50.0% | |
| AAGGAATCAACGAGTGGGGA+GGG | + | chr1_3:10656346-10656365 | None:intergenic | 50.0% | |
| GGAGAAGGAATCAACGAGTG+GGG | + | chr1_3:10656350-10656369 | None:intergenic | 50.0% | |
| CGGAGAAGGAATCAACGAGT+GGG | + | chr1_3:10656351-10656370 | None:intergenic | 50.0% | |
| ACGGAGAAGGAATCAACGAG+TGG | + | chr1_3:10656352-10656371 | None:intergenic | 50.0% | |
| TCGTATTTGCTTGACGGTGG+TGG | + | chr1_3:10656381-10656400 | None:intergenic | 50.0% | |
| CGAAATATCGGAGCGGGAAA+AGG | + | chr1_3:10656513-10656532 | None:intergenic | 50.0% | |
| GACGTTCGAAATATCGGAGC+GGG | + | chr1_3:10656519-10656538 | None:intergenic | 50.0% | |
| TCCAAACAGGGCCTATGAAC+TGG | - | chr1_3:10657222-10657241 | Msa0103490:intron | 50.0% | |
| ACCAGTTCATAGGCCCTGTT+TGG | + | chr1_3:10657226-10657245 | None:intergenic | 50.0% | |
| !! | GGTGCTGTTGCATCTGCTAA+TGG | - | chr1_3:10657678-10657697 | Msa0103490:intron | 50.0% |
| GGGTCAGCTCTTGTGAAGAT+TGG | - | chr1_3:10657699-10657718 | Msa0103490:intron | 50.0% | |
| ! | CGGAGGCATATGGAAGTCTA+TGG | + | chr1_3:10658021-10658040 | None:intergenic | 50.0% |
| TGTTCTCCGATTGTTAGGCC+TGG | - | chr1_3:10658044-10658063 | Msa0103490:intron | 50.0% | |
| AGGGGACTTGGATGGAAAAG+AGG | - | chr1_3:10658232-10658251 | Msa0103490:intron | 50.0% | |
| ! | AACACGTAGTGGGGTCACTT+TGG | + | chr1_3:10658342-10658361 | None:intergenic | 50.0% |
| AAACCAGTAGAAGTGGGGTG+GGG | + | chr1_3:10658406-10658425 | None:intergenic | 50.0% | |
| CAGGAAATCACCACAGGAAC+AGG | + | chr1_3:10658439-10658458 | None:intergenic | 50.0% | |
| AGTAGGCAGGAAATCACCAC+AGG | + | chr1_3:10658445-10658464 | None:intergenic | 50.0% | |
| TGTCCTTCAAAGCAGTAGGC+AGG | + | chr1_3:10658458-10658477 | None:intergenic | 50.0% | |
| AGAGAGTTGTCCTTGGTTGG+TGG | - | chr1_3:10658637-10658656 | Msa0103490:intron | 50.0% | |
| ! | TGCAGCTTTTCCACCAACCA+AGG | + | chr1_3:10658650-10658669 | None:intergenic | 50.0% |
| !! | TGGTTGGTGGAAAAGCTGCA+TGG | - | chr1_3:10658650-10658669 | Msa0103490:intron | 50.0% |
| TGGTGGAAAAGCTGCATGGA+TGG | - | chr1_3:10658654-10658673 | Msa0103490:intron | 50.0% | |
| AGCTGCATGGATGGCTTACT+TGG | - | chr1_3:10658663-10658682 | Msa0103490:intron | 50.0% | |
| GGCTGCCGGAATAACAGAAA+GGG | + | chr1_3:10659656-10659675 | None:intergenic | 50.0% | |
| GGCAGAGAGGGATTGATTAG+AGG | - | chr1_3:10659875-10659894 | Msa0103490:intron | 50.0% | |
| TGGTTGCTAGGCATAGCATG+AGG | + | chr1_3:10660115-10660134 | None:intergenic | 50.0% | |
| ! | AAGGTGAAGCGCTTGTCATC+TGG | - | chr1_3:10660170-10660189 | Msa0103490:intron | 50.0% |
| !! | TGATGGCTGGTTTGAGAAGC+AGG | - | chr1_3:10660243-10660262 | Msa0103490:intron | 50.0% |
| CAATGGACATGCCGCATAAG+TGG | - | chr1_3:10660367-10660386 | Msa0103490:intron | 50.0% | |
| AAGGATGGAGCCATTTGGCT+TGG | - | chr1_3:10660499-10660518 | Msa0103490:intron | 50.0% | |
| !! | AGTTCTGAGGCCAAGCCAAA+TGG | + | chr1_3:10660512-10660531 | None:intergenic | 50.0% |
| GAAATTGTTGGGTGGTCGTC+AGG | + | chr1_3:10660546-10660565 | None:intergenic | 50.0% | |
| CATGAAGGGTAATGACGTGG+AGG | - | chr1_3:10660771-10660790 | Msa0103490:intron | 50.0% | |
| ! | TGTGGGAGCCTTAGTGCTTT+TGG | - | chr1_3:10660909-10660928 | Msa0103490:intron | 50.0% |
| ! | GTGGGAGCCTTAGTGCTTTT+GGG | - | chr1_3:10660910-10660929 | Msa0103490:intron | 50.0% |
| ATAACTGAGCCCTCCAAACC+TGG | - | chr1_3:10661103-10661122 | Msa0103490:intron | 50.0% | |
| CGGTCACAATGTGCAGGTAA+TGG | - | chr1_3:10661211-10661230 | Msa0103490:intron | 50.0% | |
| CTCTTGACCTCACCCAGAAA+TGG | + | chr1_3:10661282-10661301 | None:intergenic | 50.0% | |
| TTTCTGGGTGAGGTCAAGAG+TGG | - | chr1_3:10661282-10661301 | Msa0103490:intron | 50.0% | |
| TCACCATTGCCTCCAACAAC+AGG | + | chr1_3:10661334-10661353 | None:intergenic | 50.0% | |
| GAGGCAATGGTGATTAGGAC+CGG | - | chr1_3:10661341-10661360 | Msa0103490:intron | 50.0% | |
| TTTGACCTGCAAGAAGCCTG+TGG | - | chr1_3:10661437-10661456 | Msa0103490:intron | 50.0% | |
| CAAGAAGCCTGTGGATACCA+TGG | - | chr1_3:10661446-10661465 | Msa0103490:intron | 50.0% | |
| TTCTGCGATCATGCTACCTC+TGG | - | chr1_3:10661506-10661525 | Msa0103490:intron | 50.0% | |
| TCTGCGATCATGCTACCTCT+GGG | - | chr1_3:10661507-10661526 | Msa0103490:intron | 50.0% | |
| ! | ATCGGTGGGATCTTTTGTGC+TGG | - | chr1_3:10661556-10661575 | Msa0103490:intron | 50.0% |
| TGTTCTCTCTCTCGCATCTC+TGG | - | chr1_3:10661586-10661605 | Msa0103490:intron | 50.0% | |
| GTTCTCTCTCTCGCATCTCT+GGG | - | chr1_3:10661587-10661606 | Msa0103490:intron | 50.0% | |
| GCTACAGCAGGAATTTGCAC+TGG | + | chr1_3:10662181-10662200 | None:intergenic | 50.0% | |
| AGGACTGTGTTGCCTTGACT+AGG | - | chr1_3:10663174-10663193 | Msa0103490:CDS | 50.0% | |
| CCTCTCCCATTCGGTTAGAA+TGG | + | chr1_3:10663488-10663507 | None:intergenic | 50.0% | |
| CCATTCTAACCGAATGGGAG+AGG | - | chr1_3:10663485-10663504 | Msa0103490:five_prime_UTR | 50.0% | |
| !! | CTCAACGGGTTTGTTGGGTC+GGG | + | chr1_3:10656245-10656264 | None:intergenic | 55.0% |
| !! | GCTCAACGGGTTTGTTGGGT+CGG | + | chr1_3:10656246-10656265 | None:intergenic | 55.0% |
| CTGGCGAAGAAGATGAGGGA+GGG | + | chr1_3:10656291-10656310 | None:intergenic | 55.0% | |
| TCTGGCGAAGAAGATGAGGG+AGG | + | chr1_3:10656292-10656311 | None:intergenic | 55.0% | |
| GAAGGAATCAACGAGTGGGG+AGG | + | chr1_3:10656347-10656366 | None:intergenic | 55.0% | |
| TCCAAATGCTGCTGCAACGG+AGG | - | chr1_3:10656450-10656469 | Msa0103490:three_prime_UTR | 55.0% | |
| TCCTCCGTTGCAGCAGCATT+TGG | + | chr1_3:10656454-10656473 | None:intergenic | 55.0% | |
| TCGTCTGGTGACTCCAAGGA+AGG | + | chr1_3:10657883-10657902 | None:intergenic | 55.0% | |
| TTCCTTGGAGTCACCAGACG+AGG | - | chr1_3:10657882-10657901 | Msa0103490:intron | 55.0% | |
| TCCTTGGAGTCACCAGACGA+GGG | - | chr1_3:10657883-10657902 | Msa0103490:intron | 55.0% | |
| TCACCAGACGAGGGTTGCTT+AGG | - | chr1_3:10657892-10657911 | Msa0103490:intron | 55.0% | |
| GAACCTAAGCAACCCTCGTC+TGG | + | chr1_3:10657898-10657917 | None:intergenic | 55.0% | |
| AACCAGTAGAAGTGGGGTGG+GGG | + | chr1_3:10658405-10658424 | None:intergenic | 55.0% | |
| CGGCTGCCGGAATAACAGAA+AGG | + | chr1_3:10659657-10659676 | None:intergenic | 55.0% | |
| TCTGTTATTCCGGCAGCCGA+CGG | - | chr1_3:10659658-10659677 | Msa0103490:intron | 55.0% | |
| TGCTGAGCTGGCATTTCCGT+CGG | + | chr1_3:10659677-10659696 | None:intergenic | 55.0% | |
| TGCAGCATGCGACTCTCATC+AGG | + | chr1_3:10660338-10660357 | None:intergenic | 55.0% | |
| GACGTGGAGGGAATGATGCA+TGG | - | chr1_3:10660784-10660803 | Msa0103490:intron | 55.0% | |
| CAACTTGGGCCAGGTTTGGA+GGG | + | chr1_3:10661115-10661134 | None:intergenic | 55.0% | |
| CTGGCCCAAGTTGCCTGTTT+GGG | - | chr1_3:10661122-10661141 | Msa0103490:intron | 55.0% | |
| TGGCCCAAGTTGCCTGTTTG+GGG | - | chr1_3:10661123-10661142 | Msa0103490:intron | 55.0% | |
| GACCCCCAAACAGGCAACTT+GGG | + | chr1_3:10661129-10661148 | None:intergenic | 55.0% | |
| ! | GCTCTTTTGGACCCCCAAAC+AGG | + | chr1_3:10661138-10661157 | None:intergenic | 55.0% |
| TGCACATTGTGACCGCCATC+TGG | + | chr1_3:10661206-10661225 | None:intergenic | 55.0% | |
| ! | AGATGGCGGTCACAATGTGC+AGG | - | chr1_3:10661205-10661224 | Msa0103490:intron | 55.0% |
| GCACCTGTTGTTGGAGGCAA+TGG | - | chr1_3:10661328-10661347 | Msa0103490:intron | 55.0% | |
| GAACAGACACCATGTCCAGG+TGG | + | chr1_3:10661392-10661411 | None:intergenic | 55.0% | |
| CCTGAACAGACACCATGTCC+AGG | + | chr1_3:10661395-10661414 | None:intergenic | 55.0% | |
| CCTGGACATGGTGTCTGTTC+AGG | - | chr1_3:10661392-10661411 | Msa0103490:intron | 55.0% | |
| GGTATCCACAGGCTTCTTGC+AGG | + | chr1_3:10661445-10661464 | None:intergenic | 55.0% | |
| GAATCAACGAGTGGGGAGGG+TGG | + | chr1_3:10656343-10656362 | None:intergenic | 60.0% | |
| !! | TTGACGGTGGTGGACGCGAA+CGG | + | chr1_3:10656371-10656390 | None:intergenic | 60.0% |
| ACCCTCGTCTGGTGACTCCA+AGG | + | chr1_3:10657887-10657906 | None:intergenic | 60.0% | |
| CTCCGATTGTTAGGCCTGGC+AGG | - | chr1_3:10658048-10658067 | Msa0103490:intron | 60.0% | |
| GGCCTGCCAGGCCTAACAAT+CGG | + | chr1_3:10658053-10658072 | None:intergenic | 60.0% | |
| ! | ACAACCGGCTCTGCTTCAGC+AGG | + | chr1_3:10658074-10658093 | None:intergenic | 60.0% |
| TTCCCCCACCCCACTTCTAC+TGG | - | chr1_3:10658400-10658419 | Msa0103490:intron | 60.0% | |
| AGCAGGTGGTTGTGCTGAGC+TGG | + | chr1_3:10659689-10659708 | None:intergenic | 60.0% | |
| GCATGCGACTCTCATCAGGC+AGG | + | chr1_3:10660334-10660353 | None:intergenic | 60.0% | |
| GCAACTTGGGCCAGGTTTGG+AGG | + | chr1_3:10661116-10661135 | None:intergenic | 60.0% | |
| CAGGCAACTTGGGCCAGGTT+TGG | + | chr1_3:10661119-10661138 | None:intergenic | 60.0% | |
| CCAAACAGGCAACTTGGGCC+AGG | + | chr1_3:10661124-10661143 | None:intergenic | 60.0% | |
| CCTGGCCCAAGTTGCCTGTT+TGG | - | chr1_3:10661121-10661140 | Msa0103490:intron | 60.0% | |
| GGCCCAAGTTGCCTGTTTGG+GGG | - | chr1_3:10661124-10661143 | Msa0103490:intron | 60.0% | |
| GGACCCCCAAACAGGCAACT+TGG | + | chr1_3:10661130-10661149 | None:intergenic | 60.0% | |
| TTTGCTGCAGGACTGCCACC+TGG | - | chr1_3:10661374-10661393 | Msa0103490:intron | 60.0% | |
| !! | TTCATGGCGGACACTCCCAG+AGG | + | chr1_3:10661525-10661544 | None:intergenic | 60.0% |
| CTCTCGCATCTCTGGGTTCG+CGG | - | chr1_3:10661594-10661613 | Msa0103490:intron | 60.0% | |
| TCTCGCATCTCTGGGTTCGC+GGG | - | chr1_3:10661595-10661614 | Msa0103490:intron | 60.0% | |
| TAGGCAAGAACTGGCCCACC+AGG | + | chr1_3:10662442-10662461 | None:intergenic | 60.0% | |
| !! | GGGTTTGTTGGGTCGGGTCC+GGG | + | chr1_3:10656239-10656258 | None:intergenic | 65.0% |
| !! | CGGGTTTGTTGGGTCGGGTC+CGG | + | chr1_3:10656240-10656259 | None:intergenic | 65.0% |
| GGCGCAACGGTCAGTGGGAA+AGG | + | chr1_3:10656322-10656341 | None:intergenic | 65.0% | |
| AGGGTGGCGCAACGGTCAGT+GGG | + | chr1_3:10656327-10656346 | None:intergenic | 65.0% | |
| !! | GTGGTGGACGCGAACGGAGA+AGG | + | chr1_3:10656365-10656384 | None:intergenic | 65.0% |
| TCTGCTTCAGCAGGCCTGCC+AGG | + | chr1_3:10658065-10658084 | None:intergenic | 65.0% | |
| CAGGCCTGCTGAAGCAGAGC+CGG | - | chr1_3:10658067-10658086 | Msa0103490:intron | 65.0% | |
| TCTAGAGAGAGGGGAGGGCG+AGG | - | chr1_3:10659331-10659350 | Msa0103490:intron | 65.0% | |
| CTAGAGAGAGGGGAGGGCGA+GGG | - | chr1_3:10659332-10659351 | Msa0103490:intron | 65.0% | |
| ! | CTGGCATTTCCGTCGGCTGC+CGG | + | chr1_3:10659670-10659689 | None:intergenic | 65.0% |
| GCAGGACTGCCACCTGGACA+TGG | - | chr1_3:10661380-10661399 | Msa0103490:intron | 65.0% | |
| GAGGGTGGCGCAACGGTCAG+TGG | + | chr1_3:10656328-10656347 | None:intergenic | 70.0% | |
| GAGTGGGGAGGGTGGCGCAA+CGG | + | chr1_3:10656335-10656354 | None:intergenic | 70.0% | |
| GCATCTCTGGGTTCGCGGGC+TGG | - | chr1_3:10661599-10661618 | Msa0103490:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 10656198 | 10663540 | 10656198 | ID=Msa0103490;Name=Msa0103490 |
| chr1_3 | mRNA | 10656198 | 10663540 | 10656198 | ID=Msa0103490-mRNA-1;Parent=Msa0103490;Name=Msa0103490-mRNA-1;_AED=0.02;_eAED=0.02;_QI=244|1|1|1|0.85|1|8|281|304 |
| chr1_3 | exon | 10656198 | 10656562 | 10656198 | ID=Msa0103490-mRNA-1:exon:4424;Parent=Msa0103490-mRNA-1 |
| chr1_3 | exon | 10657261 | 10657556 | 10657261 | ID=Msa0103490-mRNA-1:exon:4423;Parent=Msa0103490-mRNA-1 |
| chr1_3 | exon | 10660838 | 10660913 | 10660838 | ID=Msa0103490-mRNA-1:exon:4422;Parent=Msa0103490-mRNA-1 |
| chr1_3 | exon | 10661054 | 10661120 | 10661054 | ID=Msa0103490-mRNA-1:exon:4421;Parent=Msa0103490-mRNA-1 |
| chr1_3 | exon | 10661615 | 10661720 | 10661615 | ID=Msa0103490-mRNA-1:exon:4420;Parent=Msa0103490-mRNA-1 |
| chr1_3 | exon | 10661825 | 10661894 | 10661825 | ID=Msa0103490-mRNA-1:exon:4419;Parent=Msa0103490-mRNA-1 |
| chr1_3 | exon | 10662010 | 10662059 | 10662010 | ID=Msa0103490-mRNA-1:exon:4418;Parent=Msa0103490-mRNA-1 |
| chr1_3 | exon | 10663131 | 10663540 | 10663131 | ID=Msa0103490-mRNA-1:exon:4417;Parent=Msa0103490-mRNA-1 |
| chr1_3 | five_prime_UTR | 10663297 | 10663540 | 10663297 | ID=Msa0103490-mRNA-1:five_prime_utr;Parent=Msa0103490-mRNA-1 |
| chr1_3 | CDS | 10663131 | 10663296 | 10663131 | ID=Msa0103490-mRNA-1:cds;Parent=Msa0103490-mRNA-1 |
| chr1_3 | CDS | 10662010 | 10662059 | 10662010 | ID=Msa0103490-mRNA-1:cds;Parent=Msa0103490-mRNA-1 |
| chr1_3 | CDS | 10661825 | 10661894 | 10661825 | ID=Msa0103490-mRNA-1:cds;Parent=Msa0103490-mRNA-1 |
| chr1_3 | CDS | 10661615 | 10661720 | 10661615 | ID=Msa0103490-mRNA-1:cds;Parent=Msa0103490-mRNA-1 |
| chr1_3 | CDS | 10661054 | 10661120 | 10661054 | ID=Msa0103490-mRNA-1:cds;Parent=Msa0103490-mRNA-1 |
| chr1_3 | CDS | 10660838 | 10660913 | 10660838 | ID=Msa0103490-mRNA-1:cds;Parent=Msa0103490-mRNA-1 |
| chr1_3 | CDS | 10657261 | 10657556 | 10657261 | ID=Msa0103490-mRNA-1:cds;Parent=Msa0103490-mRNA-1 |
| chr1_3 | CDS | 10656479 | 10656562 | 10656479 | ID=Msa0103490-mRNA-1:cds;Parent=Msa0103490-mRNA-1 |
| chr1_3 | three_prime_UTR | 10656198 | 10656478 | 10656198 | ID=Msa0103490-mRNA-1:three_prime_utr;Parent=Msa0103490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
