AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381600 MtrunA17_Chr3g0135621 96.865 606 18 1 1 606 1 605 0.0 1120
Msa0381600 MtrunA17_Chr3g0135631 96.287 404 14 1 203 606 1 403 0.0 712
Msa0381600 MtrunA17_Chr1g0151761 62.969 640 142 18 1 588 1 597 0.0 593
Msa0381600 MtrunA17_Chr3g0135641 98.942 189 2 0 1 189 1 189 2.87e-131 382
Msa0381600 MtrunA17_Chr3g0135641 46.377 69 34 2 182 249 90 156 9.42e-13 67.4
Msa0381600 MtrunA17_Chr5g0396111 56.069 173 72 1 82 250 181 353 8.82e-58 198
Msa0381600 MtrunA17_Chr7g0217251 27.675 542 256 27 68 561 141 594 1.92e-12 70.1
Msa0381600 MtrunA17_Chr1g0197441 29.187 209 117 6 89 283 39 230 1.44e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381600 AT2G25970.1 53.177 598 181 27 26 587 66 600 8.01e-129 392
Msa0381600 AT1G33680.1 35.979 567 247 28 86 600 232 734 6.95e-54 196
Msa0381600 AT4G10070.1 43.972 282 127 10 82 349 172 436 1.93e-53 194
Msa0381600 AT5G04430.2 30.769 208 124 7 89 289 38 232 5.60e-14 73.9
Msa0381600 AT5G04430.1 31.548 168 102 4 89 253 38 195 2.78e-12 68.6

Find 260 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGAAAACAAACTTATTT+TGG 0.160449 3_1:-83827236 Msa0381600:three_prime_UTR
TCCATGTCATTTGCAGAATT+TGG 0.165836 3_1:-83827049 Msa0381600:three_prime_UTR
CTTTAGGTTGGCCTTATAAT+TGG 0.202642 3_1:-83829740 Msa0381600:intron
TTCTCTTGTGATGGTTATTA+TGG 0.204549 3_1:-83827330 Msa0381600:three_prime_UTR
GGAACTTCGCCGCTCATTTC+AGG 0.205981 3_1:+83827069 None:intergenic
GGTAGGGTTGGTGTTCTTAT+TGG 0.218158 3_1:-83831030 Msa0381600:CDS
CAGTAGTGGGTTGGGAAGTT+TGG 0.232400 3_1:+83827829 None:intergenic
GACTAGGATGGTTGAACTTA+TGG 0.236098 3_1:-83830917 Msa0381600:CDS
CAGAATCGTCTCAGAAATTC+AGG 0.249484 3_1:-83828401 Msa0381600:CDS
AGTAGTGGGTTGGGAAGTTT+GGG 0.253746 3_1:+83827830 None:intergenic
TATCGATGTTGCTATCAAAA+TGG 0.259984 3_1:+83827275 None:intergenic
AGTGCAAATCCACCTGTTTA+TGG 0.260187 3_1:-83827663 Msa0381600:CDS
CTCCTCCTTTACCAATTATA+AGG 0.261517 3_1:+83829729 None:intergenic
TAGGCTGAAGCTGGGGCTTC+TGG 0.266896 3_1:-83829924 Msa0381600:CDS
AGTTGGAAGCGTGCCCTTCT+TGG 0.286199 3_1:+83827874 None:intergenic
GGTTGGTAGCATAGCCTTGC+TGG 0.287848 3_1:+83827802 None:intergenic
TTCACTTTCTTCCTCTCTAT+AGG 0.289785 3_1:-83831345 Msa0381600:five_prime_UTR
ATTACTCCCACTGCCATAAC+TGG 0.291727 3_1:+83827902 None:intergenic
CTCTATAGGGTTTGTTTCAA+TGG 0.295151 3_1:-83831331 Msa0381600:exon
TTCTACCGGAGCACGAATTC+AGG 0.305971 3_1:-83829684 Msa0381600:intron
AGACGGATGGTTGCACAATC+TGG 0.309169 3_1:-83829891 Msa0381600:CDS
ACCATCCTAGTCTGAGAATT+AGG 0.309685 3_1:+83830928 None:intergenic
CATCCCCACACCTTATTGTT+TGG 0.311267 3_1:+83829843 None:intergenic
CTTTCTGTTGATGTATCACC+TGG 0.313635 3_1:+83829476 None:intergenic
TCACTTTCTTCCTCTCTATA+GGG 0.320093 3_1:-83831344 Msa0381600:five_prime_UTR
GAAGGGCACGCTTCCAACTA+TGG 0.327467 3_1:-83827870 Msa0381600:CDS
TGATGGTTATTATGGTCCTT+CGG 0.350858 3_1:-83827322 Msa0381600:three_prime_UTR
GTGTGGGAAGGAATTGGATT+AGG 0.357179 3_1:+83831374 None:intergenic
TTTGCTGTTGCTGGGGTTGT+TGG 0.358645 3_1:+83828114 None:intergenic
TCATATGGAAATAGTTCTTA+TGG 0.360383 3_1:-83827453 Msa0381600:CDS
GTTATCGGACTTGGTTCGTT+TGG 0.360575 3_1:+83831152 None:intergenic
AACTTCTTGAGCTCGTTGTT+TGG 0.361408 3_1:+83831224 None:intergenic
GAAGCTGGGGCTTCTGGCGG+TGG 0.361827 3_1:-83829918 Msa0381600:CDS
TTTGCTGATTCAATTTGATC+AGG 0.363459 3_1:+83829431 None:intergenic
GATTCAAGTTACTCGTGATA+TGG 0.369842 3_1:-83830959 Msa0381600:CDS
CCATAGGCCGCTTGGGAGGT+AGG 0.372582 3_1:+83827744 None:intergenic
TTTATTAACTAGGCTGAAGC+TGG 0.373039 3_1:-83829933 Msa0381600:intron
TTATGGTGCTGGTTATGTTC+AGG 0.375380 3_1:-83827436 Msa0381600:CDS
GATGCAAATACCAAACAATA+AGG 0.377129 3_1:-83829853 Msa0381600:intron
TTATCGGACTTGGTTCGTTT+GGG 0.378392 3_1:+83831153 None:intergenic
GAGTTCGATGTCCGTGGCGG+TGG 0.387307 3_1:+83831260 None:intergenic
CCGGTGGATATTCCACCAAC+TGG 0.387764 3_1:-83828199 Msa0381600:CDS
AATGCGCAACAACAACAATC+TGG 0.391525 3_1:-83827975 Msa0381600:CDS
TGTTGCTGATCATATGTTTG+TGG 0.391746 3_1:+83827942 None:intergenic
GCTGAGCATACCCGGAAGGC+GGG 0.392161 3_1:+83827577 None:intergenic
GGTCCTTCACAGCCAGCTGA+TGG 0.395783 3_1:-83828083 Msa0381600:CDS
GGCCAGACTCCGCCGTCATA+TGG 0.396618 3_1:-83827468 Msa0381600:CDS
TTAGCTCCTATTCAACCTTC+CGG 0.397554 3_1:+83827199 None:intergenic
GTTGGTGTTCTTATTGGTAA+AGG 0.399271 3_1:-83831024 Msa0381600:CDS
TGGAGCACCGTTATCGGACT+TGG 0.399369 3_1:+83831143 None:intergenic
CCTACCTCCCAAGCGGCCTA+TGG 0.399491 3_1:-83827744 Msa0381600:CDS
CCCCAGCAACAGCAAAATCC+TGG 0.404109 3_1:-83828107 Msa0381600:CDS
TTCCATATGACGGCGGAGTC+TGG 0.406065 3_1:+83827466 None:intergenic
AGTCAACCACAGTCTGGTTA+TGG 0.407882 3_1:-83827720 Msa0381600:CDS
GTTGGAAGCGTGCCCTTCTT+GGG 0.411122 3_1:+83827875 None:intergenic
TATGATCAGCAACAAGGTTA+TGG 0.411167 3_1:-83827933 Msa0381600:CDS
CAAGGTGGCCAGCCTGGCTA+TGG 0.413475 3_1:-83827489 Msa0381600:CDS
AATCCCGACCACCGTCTAGC+TGG 0.415564 3_1:-83828346 Msa0381600:CDS
CATAGGCCGCTTGGGAGGTA+GGG 0.417451 3_1:+83827745 None:intergenic
ACTAGGATGGTTGAACTTAT+GGG 0.418819 3_1:-83830916 Msa0381600:CDS
AACTGCACAGGCTGTTCCAC+AGG 0.420141 3_1:-83827388 Msa0381600:CDS
AACACGGTGTGGGAAGGAAT+TGG 0.425308 3_1:+83831368 None:intergenic
TATGGCTCTGCTCCCAGTTA+TGG 0.425707 3_1:-83827915 Msa0381600:CDS
TTACATTTATCTAAGCTGTA+TGG 0.426408 3_1:-83827131 Msa0381600:three_prime_UTR
GATGGTTATTATGGTCCTTC+GGG 0.428194 3_1:-83827321 Msa0381600:three_prime_UTR
AGCCAACCAGGACAGGGTTA+TGG 0.429254 3_1:-83828020 Msa0381600:CDS
CTGGTTGAGGAGTTCCTTGT+TGG 0.431801 3_1:+83827781 None:intergenic
GAAGCGTGCCCTTCTTGGGT+TGG 0.433826 3_1:+83827879 None:intergenic
TGGTTATAGCCAACCAGGAC+AGG 0.437107 3_1:-83828027 Msa0381600:CDS
TAGTGGGTTGGGAAGTTTGG+GGG 0.438776 3_1:+83827832 None:intergenic
ATTGTGGAATATATGTTAAA+AGG 0.439419 3_1:-83827022 Msa0381600:three_prime_UTR
CTGGGCAACAGTAGTGGGTT+GGG 0.439592 3_1:+83827821 None:intergenic
GCTTGTTGCACAGGAGCAGC+AGG 0.441689 3_1:+83828317 None:intergenic
TATTATGGTCCTTCGGGATG+TGG 0.441964 3_1:-83827315 Msa0381600:three_prime_UTR
GCTCCTCAAGGTGGCCAGCC+TGG 0.443253 3_1:-83827495 Msa0381600:CDS
TCTTGACCATAACCCTGTCC+TGG 0.444195 3_1:+83828014 None:intergenic
CGATTGTGGAGCACCGTTAT+CGG 0.444219 3_1:+83831137 None:intergenic
GACGGATGGTTGCACAATCT+GGG 0.446354 3_1:-83829890 Msa0381600:CDS
CGATAACGGTGCTCCACAAT+CGG 0.446619 3_1:-83831136 Msa0381600:CDS
ATCGATGTTGCTATCAAAAT+GGG 0.453806 3_1:+83827276 None:intergenic
GTTGACTTCCATAGGCCGCT+TGG 0.454305 3_1:+83827736 None:intergenic
AGCCCAGCTAGACGGTGGTC+GGG 0.454864 3_1:+83828343 None:intergenic
AGTGGGTTGGGAAGTTTGGG+GGG 0.456628 3_1:+83827833 None:intergenic
GTCCTTCACAGCCAGCTGAT+GGG 0.456888 3_1:-83828082 Msa0381600:CDS
TGAGCATACCCGGAAGGCGG+GGG 0.460955 3_1:+83827579 None:intergenic
TTGACTTCCATAGGCCGCTT+GGG 0.461597 3_1:+83827737 None:intergenic
AGCTAGACGGTGGTCGGGAT+TGG 0.461750 3_1:+83828348 None:intergenic
AATTGAATCAGCAAAGCAAT+TGG 0.464801 3_1:-83829423 Msa0381600:CDS
AAGTATCTTCAGATGCAATC+TGG 0.464861 3_1:-83830988 Msa0381600:CDS
CCTGTGCAACAAGCTGGTTA+TGG 0.465420 3_1:-83828308 Msa0381600:CDS
AGAACACCAACCCTACCATT+AGG 0.466222 3_1:+83831036 None:intergenic
TACAGTCAACCTCCTTCCTC+TGG 0.467231 3_1:-83828047 Msa0381600:CDS
GATAACGGTGCTCCACAATC+GGG 0.467332 3_1:-83831135 Msa0381600:CDS
GGAAATAGTTCTTATGGTGC+TGG 0.472518 3_1:-83827447 Msa0381600:CDS
TTGCTGATTCAATTTGATCA+GGG 0.472599 3_1:+83829432 None:intergenic
TCGCAGCAAGGTGGTAGTTA+TGG 0.474269 3_1:-83831081 Msa0381600:CDS
AAGAAGATTGAAATACCTAA+TGG 0.476293 3_1:-83831051 Msa0381600:CDS
GTTGGCCTTATAATTGGTAA+AGG 0.477296 3_1:-83829734 Msa0381600:CDS
GGCGGAGTCTGGCCATAGCC+AGG 0.479964 3_1:+83827477 None:intergenic
GACCCATCAGCTGGCTGTGA+AGG 0.481746 3_1:+83828080 None:intergenic
GGTTATGGCTATGGGCAACC+TGG 0.488138 3_1:-83828293 Msa0381600:CDS
GAGTCTGGCCATAGCCAGGC+TGG 0.490778 3_1:+83827481 None:intergenic
CAACAAGCTGGTTATGGCTA+TGG 0.490845 3_1:-83828302 Msa0381600:CDS
CCATAACCAGCTTGTTGCAC+AGG 0.496256 3_1:+83828308 None:intergenic
GGCTGAGCATACCCGGAAGG+CGG 0.497089 3_1:+83827576 None:intergenic
CTTCTGGCGGTGGCACTAGA+CGG 0.497957 3_1:-83829908 Msa0381600:CDS
GATGGACCAGAGTATGATCC+AGG 0.501151 3_1:+83828275 None:intergenic
CCAGTTGGTGGAATATCCAC+CGG 0.501220 3_1:+83828199 None:intergenic
TTCTGTTGATGTATCACCTG+GGG 0.507849 3_1:+83829478 None:intergenic
GTAGTGGGTTGGGAAGTTTG+GGG 0.508308 3_1:+83827831 None:intergenic
CCCAGCAACAGCAAAATCCT+GGG 0.508607 3_1:-83828106 Msa0381600:CDS
GTTGGTAGCATAGCCTTGCT+GGG 0.508853 3_1:+83827803 None:intergenic
GGTGAGATGGTGCAGTGGAT+TGG 0.508922 3_1:+83828174 None:intergenic
CCTAGCACAGCAGGAGGCTA+TGG 0.510304 3_1:-83827627 Msa0381600:CDS
CTGCTCCCAGTTATGGCAGT+GGG 0.512052 3_1:-83827908 Msa0381600:CDS
GACTGTGATTGACCATAAAC+AGG 0.513068 3_1:+83827651 None:intergenic
TATGGAAGTCAACCACAGTC+TGG 0.513429 3_1:-83827726 Msa0381600:CDS
CCATAGCCTCCTGCTGTGCT+AGG 0.513919 3_1:+83827627 None:intergenic
TGCTGATTCAATTTGATCAG+GGG 0.517465 3_1:+83829433 None:intergenic
TAACTCTGGCTGAGCATACC+CGG 0.518719 3_1:+83827569 None:intergenic
GCTGCTCCTGTGCAACAAGC+TGG 0.519086 3_1:-83828314 Msa0381600:CDS
CTTGGTTCGTTTGGGATCGT+AGG 0.519590 3_1:+83831161 None:intergenic
GAAATACCTAATGGTAGGGT+TGG 0.520361 3_1:-83831042 Msa0381600:CDS
TCACAGTCACCTAGCACAGC+AGG 0.521102 3_1:-83827636 Msa0381600:CDS
GCTCTCTGAGTGCCTAACTC+TGG 0.522190 3_1:+83827555 None:intergenic
TCAGCAGAAGAAACAGCGTC+AGG 0.524572 3_1:+83830889 None:intergenic
GACCATAACCCTGTCCTGGT+TGG 0.526303 3_1:+83828018 None:intergenic
ATAGGCCGCTTGGGAGGTAG+GGG 0.527994 3_1:+83827746 None:intergenic
GCCTTGCTGGGCAACAGTAG+TGG 0.528254 3_1:+83827815 None:intergenic
GCACCAGTGCAACCAGGGTA+TGG 0.529757 3_1:-83827534 Msa0381600:CDS
ATCTGCTTGTGATCCATAGT+TGG 0.529858 3_1:+83827857 None:intergenic
AGTTCGATGTCCGTGGCGGT+GGG 0.530955 3_1:+83831261 None:intergenic
TGCAGAATTTGGTGCAATTG+TGG 0.531451 3_1:-83827038 Msa0381600:three_prime_UTR
ATCCCGACCACCGTCTAGCT+GGG 0.531596 3_1:-83828345 Msa0381600:CDS
TATCCACCGGGTTGCTGAGG+AGG 0.532429 3_1:+83828212 None:intergenic
GGGAGTAATCCAACCCAAGA+AGG 0.532914 3_1:-83827888 Msa0381600:CDS
GAGCCCAGCTAGACGGTGGT+CGG 0.534258 3_1:+83828342 None:intergenic
GAGGGAGGAGCACCATAGCT+AGG 0.535314 3_1:+83827696 None:intergenic
GGTGTTCTTATTGGTAAAGG+AGG 0.535918 3_1:-83831021 Msa0381600:CDS
GCTGAAGCTGGGGCTTCTGG+CGG 0.536744 3_1:-83829921 Msa0381600:CDS
AACAAGCTGGTTATGGCTAT+GGG 0.538613 3_1:-83828301 Msa0381600:CDS
GCAGGAGGAGCCCAGCTAGA+CGG 0.538714 3_1:+83828335 None:intergenic
CACCAGCAGTCTACTCATGC+AGG 0.540059 3_1:-83828155 Msa0381600:CDS
TAAACAGGTGGATTTGCACT+TGG 0.540765 3_1:+83827666 None:intergenic
GGGTATGCTCAGCCAGAGTT+AGG 0.541597 3_1:-83827567 Msa0381600:CDS
TTATTAACTAGGCTGAAGCT+GGG 0.541792 3_1:-83829932 Msa0381600:intron
TCTGCTCCCAGTTATGGCAG+TGG 0.543356 3_1:-83827909 Msa0381600:CDS
ATGCCTCAGCCACCATATGC+AGG 0.544233 3_1:-83828239 Msa0381600:CDS
GCTGGGCAACAGTAGTGGGT+TGG 0.546458 3_1:+83827820 None:intergenic
CTGAGCATACCCGGAAGGCG+GGG 0.547333 3_1:+83827578 None:intergenic
GCTCGTCTTCTCAGCGTCAC+CGG 0.548114 3_1:-83831198 Msa0381600:CDS
TTTCTGTTGATGTATCACCT+GGG 0.548846 3_1:+83829477 None:intergenic
CTGATCCTAATTCTCAGACT+AGG 0.549418 3_1:-83830933 Msa0381600:CDS
TGAGGAGGATAGCCTGCATA+TGG 0.549695 3_1:+83828227 None:intergenic
CAGAGAGCACCAGTGCAACC+AGG 0.550434 3_1:-83827540 Msa0381600:CDS
TTGAGGAGTTCCTTGTTGGT+TGG 0.551933 3_1:+83827785 None:intergenic
AAGAGTATGCAAGCTTCTAC+CGG 0.552343 3_1:-83829698 Msa0381600:CDS
TAGCGATGGAGCAACTGCAC+AGG 0.553254 3_1:-83827400 Msa0381600:CDS
TAGCCTGCATATGGTGGCTG+AGG 0.553849 3_1:+83828236 None:intergenic
ATGCGCAACAACAACAATCT+GGG 0.554757 3_1:-83827974 Msa0381600:CDS
GGACCATACCCTGGTTGCAC+TGG 0.555058 3_1:+83827531 None:intergenic
GGCTATCCTCCTCAGCAACC+CGG 0.555442 3_1:-83828218 Msa0381600:CDS
AGTGGATTGGTCCCAGTTGG+TGG 0.555514 3_1:+83828187 None:intergenic
AGATTGAAATACCTAATGGT+AGG 0.556097 3_1:-83831047 Msa0381600:CDS
AAACGAACCAAGTCCGATAA+CGG 0.556846 3_1:-83831150 Msa0381600:CDS
TAGCCAGGCTGGCCACCTTG+AGG 0.557256 3_1:+83827492 None:intergenic
TTGGTTAATCAAATCCTCAC+TGG 0.558998 3_1:-83829404 Msa0381600:CDS
TCCTCTGGTTATAGCCAACC+AGG 0.559096 3_1:-83828032 Msa0381600:CDS
CAATCATACGGTGCTCCTCA+AGG 0.564374 3_1:-83827507 Msa0381600:CDS
CTCAGAAATTCAGGGAACTC+AGG 0.566464 3_1:-83828392 Msa0381600:CDS
GAGAACCTGAATTCGTGCTC+CGG 0.566604 3_1:+83829679 None:intergenic
GCTCCATCGCTAGCATACGC+TGG 0.567046 3_1:+83827411 None:intergenic
GCTACTGCATAACCTGGTTG+AGG 0.568505 3_1:+83827768 None:intergenic
TCTGGTTATGGACCTAGCTA+TGG 0.569183 3_1:-83827708 Msa0381600:CDS
CTGTATGCAGACCCATCAGC+TGG 0.570591 3_1:+83828071 None:intergenic
TAAGAATCAAACCCCGATTG+TGG 0.574402 3_1:+83831123 None:intergenic
GGGTATGGTCCGCAATCATA+CGG 0.574711 3_1:-83827519 Msa0381600:CDS
GGCCTTATAATTGGTAAAGG+AGG 0.574874 3_1:-83829731 Msa0381600:CDS
GTAGGAGAGTGGTGGAGCGC+CGG 0.574920 3_1:+83831179 None:intergenic
CCTTGCTGGGCAACAGTAGT+GGG 0.574987 3_1:+83827816 None:intergenic
AGAATCGTCTCAGAAATTCA+GGG 0.575702 3_1:-83828400 Msa0381600:CDS
TGCAGTGGATTGGTCCCAGT+TGG 0.578827 3_1:+83828184 None:intergenic
GCTCCAGCGTATGCTAGCGA+TGG 0.580238 3_1:-83827414 Msa0381600:CDS
GGCATGTTATACTGCGGTGA+TGG 0.581623 3_1:+83828257 None:intergenic
GATTGAAATACCTAATGGTA+GGG 0.585821 3_1:-83831046 Msa0381600:CDS
CGGTGGATATTCCACCAACT+GGG 0.586403 3_1:-83828198 Msa0381600:CDS
TGTTGCACAGGAGCAGCAGG+AGG 0.586770 3_1:+83828320 None:intergenic
CAACAACAACAATCTGGGTA+TGG 0.587718 3_1:-83827969 Msa0381600:CDS
GGGCAACCTGGATCATACTC+TGG 0.588895 3_1:-83828281 Msa0381600:CDS
TGGCGGTGGCACTAGACGGA+TGG 0.589779 3_1:-83829904 Msa0381600:CDS
GAATATCCACCGGGTTGCTG+AGG 0.591522 3_1:+83828209 None:intergenic
CCCACTACTGTTGCCCAGCA+AGG 0.593544 3_1:-83827816 Msa0381600:CDS
TTACTCCCACTGCCATAACT+GGG 0.595665 3_1:+83827903 None:intergenic
ACCAAATTCTGCAAATGACA+TGG 0.598545 3_1:+83827048 None:intergenic
CGTTTGGGATCGTAGGAGAG+TGG 0.599323 3_1:+83831168 None:intergenic
ACGGATGGTTGCACAATCTG+GGG 0.600123 3_1:-83829889 Msa0381600:CDS
CACCTGCATGAGTAGACTGC+TGG 0.604282 3_1:+83828153 None:intergenic
AGTGAAAACACGGTGTGGGA+AGG 0.605750 3_1:+83831362 None:intergenic
CAGTTGGTGGAATATCCACC+GGG 0.607367 3_1:+83828200 None:intergenic
TAAGAACTATTTCCATATGA+CGG 0.608805 3_1:+83827456 None:intergenic
TCCTAATTCTCAGACTAGGA+TGG 0.609354 3_1:-83830929 Msa0381600:CDS
TGAGTAGACTGCTGGTGAGA+TGG 0.609532 3_1:+83828161 None:intergenic
GGTTATAGCCAACCAGGACA+GGG 0.609709 3_1:-83828026 Msa0381600:CDS
CCACCTTGCTGCGAGTATTG+CGG 0.611213 3_1:+83831090 None:intergenic
GGAGTAATCCAACCCAAGAA+GGG 0.613412 3_1:-83827887 Msa0381600:CDS
CATCAATGAAGTCCTTGCTG+AGG 0.616712 3_1:-83830860 Msa0381600:intron
TTGGGATCGTAGGAGAGTGG+TGG 0.618282 3_1:+83831171 None:intergenic
AGAAAGTGAAAACACGGTGT+GGG 0.622964 3_1:+83831358 None:intergenic
GGAGGAGCCCAGCTAGACGG+TGG 0.623688 3_1:+83828338 None:intergenic
AGACTGTGGTTGACTTCCAT+AGG 0.624998 3_1:+83827728 None:intergenic
TAATCAAATCCTCACTGGTG+AGG 0.625790 3_1:-83829399 Msa0381600:intron
CAACAAGGAACTCCTCAACC+AGG 0.626608 3_1:-83827780 Msa0381600:CDS
TCTGTTGATGTATCACCTGG+GGG 0.627155 3_1:+83829479 None:intergenic
GGTTATGGTCAAGAAAGCTA+TGG 0.629248 3_1:-83828005 Msa0381600:CDS
ACTTCCATAGGCCGCTTGGG+AGG 0.629551 3_1:+83827740 None:intergenic
TATGATTGCGGACCATACCC+TGG 0.630591 3_1:+83827522 None:intergenic
TCCTGGTTGGCTATAACCAG+AGG 0.630777 3_1:+83828031 None:intergenic
GGAGGATAGCCTGCATATGG+TGG 0.632205 3_1:+83828230 None:intergenic
TATAGGGTTTGTTTCAATGG+CGG 0.632326 3_1:-83831328 Msa0381600:exon
GTAGGGGCTACTGCATAACC+TGG 0.633003 3_1:+83827762 None:intergenic
TTGAAACAAACCCTATAGAG+AGG 0.634104 3_1:+83831334 None:intergenic
GACTTCGAGTTCGATGTCCG+TGG 0.636506 3_1:+83831254 None:intergenic
AAATTAAAGCCACATCCCGA+AGG 0.638216 3_1:+83827306 None:intergenic
GGCTATGCTACCAACCAACA+AGG 0.638622 3_1:-83827795 Msa0381600:CDS
TGAGGAGCACCGTATGATTG+CGG 0.639312 3_1:+83827510 None:intergenic
CAAACATATGATCAGCAACA+AGG 0.642194 3_1:-83827939 Msa0381600:CDS
TATTAACTAGGCTGAAGCTG+GGG 0.642830 3_1:-83829931 Msa0381600:intron
TCAGGTGGCTATACTCAGCA+AGG 0.643161 3_1:-83828374 Msa0381600:CDS
CGATGAACAACCCACCGCCA+CGG 0.645490 3_1:-83831271 Msa0381600:CDS
AAGAAAGTGAAAACACGGTG+TGG 0.646849 3_1:+83831357 None:intergenic
AAGCCGCAATACTCGCAGCA+AGG 0.647111 3_1:-83831093 Msa0381600:CDS
AGAGAGCACCAGTGCAACCA+GGG 0.650050 3_1:-83827539 Msa0381600:CDS
ACTGCACAGGCTGTTCCACA+GGG 0.651647 3_1:-83827387 Msa0381600:CDS
GATGTTGCTATCAAAATGGG+AGG 0.651780 3_1:+83827279 None:intergenic
GGTTGGCTATAACCAGAGGA+AGG 0.652858 3_1:+83828035 None:intergenic
TGGCTATAACCAGAGGAAGG+AGG 0.658440 3_1:+83828038 None:intergenic
AGAAATTCAGGGAACTCAGG+TGG 0.658761 3_1:-83828389 Msa0381600:CDS
GGTGTTACTAAAATGAACAC+AGG 0.662051 3_1:-83827001 Msa0381600:three_prime_UTR
TCTGGCTGAGCATACCCGGA+AGG 0.665619 3_1:+83827573 None:intergenic
CGGATGGTTGCACAATCTGG+GGG 0.666739 3_1:-83829888 Msa0381600:CDS
CCAGCAACAGCAAAATCCTG+GGG 0.670269 3_1:-83828105 Msa0381600:CDS
CAGTCACCTAGCACAGCAGG+AGG 0.674325 3_1:-83827633 Msa0381600:CDS
AGAGGAAGAAAGTGAAAACA+CGG 0.674928 3_1:+83831352 None:intergenic
TTCGAGTTCGATGTCCGTGG+CGG 0.677834 3_1:+83831257 None:intergenic
CAGCAGTCTACTCATGCAGG+TGG 0.682332 3_1:-83828152 Msa0381600:CDS
CTGCTGGTGAGATGGTGCAG+TGG 0.682356 3_1:+83828169 None:intergenic
ATAACGGTGCTCCACAATCG+GGG 0.686584 3_1:-83831134 Msa0381600:CDS
ACTTTAGCAACACCGCCCTG+TGG 0.690074 3_1:+83827372 None:intergenic
CCGCAATACTCGCAGCAAGG+TGG 0.697265 3_1:-83831090 Msa0381600:CDS
TGTGATTGACCATAAACAGG+TGG 0.715400 3_1:+83827654 None:intergenic
TATCCTCCTCAGCAACCCGG+TGG 0.720805 3_1:-83828215 Msa0381600:CDS
CTAGGTCCATAACCAGACTG+TGG 0.724556 3_1:+83827714 None:intergenic
GCACAGGCTGTTCCACAGGG+CGG 0.725045 3_1:-83827384 Msa0381600:CDS
GGTGACGCTGAGAAGACGAG+CGG 0.728767 3_1:+83831200 None:intergenic
GAACTATTTCCATATGACGG+CGG 0.728848 3_1:+83827459 None:intergenic
AGTAGCCCCTACCTCCCAAG+CGG 0.730653 3_1:-83827751 Msa0381600:CDS
CAGCAACAGCAAAATCCTGG+GGG 0.736266 3_1:-83828104 Msa0381600:CDS
TCATACGGTGCTCCTCAAGG+TGG 0.736772 3_1:-83827504 Msa0381600:CDS
GGCTGAGGCATGTTATACTG+CGG 0.750903 3_1:+83828251 None:intergenic
GATAACATACCTCACCAGTG+AGG 0.751081 3_1:+83829390 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAACTTAAAAAAGATT+TGG + chr3_1:83829047-83829066 None:intergenic 10.0%
!!! CTTTTTTAAGTTTAAAATTA+TGG - chr3_1:83829050-83829069 Msa0381600:intron 10.0%
!!! AAATTATGACTAATTTTTAT+TGG - chr3_1:83829808-83829827 Msa0381600:intron 10.0%
!!! TTTTTTTATACTCTTGTTTA+CGG - chr3_1:83827530-83827549 Msa0381600:CDS 15.0%
!!! AAAAGGTCAATAATTTTATA+AGG + chr3_1:83829132-83829151 None:intergenic 15.0%
!!! AAAATGAATAACAATTTTGT+AGG + chr3_1:83829165-83829184 None:intergenic 15.0%
!! AAATTCACTTTCAATTATAA+TGG - chr3_1:83829589-83829608 Msa0381600:intron 15.0%
!!! TCTTATATTTTCAAAAACAT+AGG + chr3_1:83831402-83831421 None:intergenic 15.0%
!! TAATCAATGATATTTCACTA+AGG + chr3_1:83827724-83827743 None:intergenic 20.0%
!!! TGAAATACATTTTTACTAAC+AGG + chr3_1:83828217-83828236 None:intergenic 20.0%
!! TATATTATAGTTACAGAATC+AGG + chr3_1:83828325-83828344 None:intergenic 20.0%
!!! CTAATATCATCAATTTTTTC+AGG - chr3_1:83828844-83828863 Msa0381600:intron 20.0%
!! AAAGAACATTAAAAATCGAT+GGG - chr3_1:83828906-83828925 Msa0381600:intron 20.0%
!!! ACACATTTTTTTGTTTTATC+TGG - chr3_1:83828997-83829016 Msa0381600:intron 20.0%
!! TTTAATCGTAAAACTAAACA+TGG + chr3_1:83829084-83829103 None:intergenic 20.0%
!!! TTAAAGTATTTCTTATCGTT+GGG - chr3_1:83829482-83829501 Msa0381600:CDS 20.0%
!! ATTGAAAGTGAATTTAACAT+AGG + chr3_1:83829584-83829603 None:intergenic 20.0%
!!! TTTTATTTCATAGTTTGTTG+AGG - chr3_1:83829636-83829655 Msa0381600:intron 20.0%
!!! CTTCGTATATTTTTATGTTT+TGG - chr3_1:83829889-83829908 Msa0381600:CDS 20.0%
!!! AGATGAAAACAAACTTATTT+TGG - chr3_1:83831127-83831146 Msa0381600:CDS 20.0%
!! ATTGTGGAATATATGTTAAA+AGG - chr3_1:83831341-83831360 Msa0381600:five_prime_UTR 20.0%
! AAGAAGATTGAAATACCTAA+TGG - chr3_1:83827312-83827331 Msa0381600:three_prime_UTR 25.0%
! TAAAAAAAAAAACCTCAGCA+AGG + chr3_1:83827518-83827537 None:intergenic 25.0%
! GTGATTTCAAAACATGAATT+GGG + chr3_1:83827690-83827709 None:intergenic 25.0%
! TACTCAAATGATGTTCAAAT+TGG - chr3_1:83827835-83827854 Msa0381600:CDS 25.0%
! TAAATATGCTCAAATGATGT+TGG - chr3_1:83828359-83828378 Msa0381600:CDS 25.0%
!!! ATACGTGTTGTTTATTAACT+AGG - chr3_1:83828420-83828439 Msa0381600:intron 25.0%
!!! TGTTTTGTTTATTCTCGTTT+GGG - chr3_1:83828577-83828596 Msa0381600:intron 25.0%
! GAAAGAACATTAAAAATCGA+TGG - chr3_1:83828905-83828924 Msa0381600:intron 25.0%
!!! TTTATCTGGCTTATCATTTT+TGG - chr3_1:83829011-83829030 Msa0381600:intron 25.0%
! TCAACAAGTCAAAATTCAAA+AGG + chr3_1:83829314-83829333 None:intergenic 25.0%
!!! CAAAGTGTTGTCTAATTTTA+TGG + chr3_1:83829350-83829369 None:intergenic 25.0%
! TAAAATTAGACAACACTTTG+AGG - chr3_1:83829350-83829369 Msa0381600:intron 25.0%
!! CTTAAAGTATTTCTTATCGT+TGG - chr3_1:83829481-83829500 Msa0381600:CDS 25.0%
! AGAATTGTTTCAATGTACTT+GGG - chr3_1:83829693-83829712 Msa0381600:CDS 25.0%
!! CTAATTTTTATTGGCATCAA+CGG - chr3_1:83829817-83829836 Msa0381600:intron 25.0%
!! TAATTTTTATTGGCATCAAC+GGG - chr3_1:83829818-83829837 Msa0381600:intron 25.0%
!!! ATTTTTATGTTTTGGTACGT+TGG - chr3_1:83829897-83829916 Msa0381600:CDS 25.0%
!!! TTTTTATGTTTTGGTACGTT+GGG - chr3_1:83829898-83829917 Msa0381600:CDS 25.0%
! TAAGAACTATTTCCATATGA+CGG + chr3_1:83830910-83830929 None:intergenic 25.0%
! TCATATGGAAATAGTTCTTA+TGG - chr3_1:83830910-83830929 Msa0381600:CDS 25.0%
!! TTTGGTACTTGAATATTTTC+CGG - chr3_1:83831145-83831164 Msa0381600:CDS 25.0%
! TTACATTTATCTAAGCTGTA+TGG - chr3_1:83831232-83831251 Msa0381600:CDS 25.0%
!!! ATATTTTTACCTGAAATGAG+CGG - chr3_1:83831285-83831304 Msa0381600:CDS 25.0%
AGATTGAAATACCTAATGGT+AGG - chr3_1:83827316-83827335 Msa0381600:three_prime_UTR 30.0%
GATTGAAATACCTAATGGTA+GGG - chr3_1:83827317-83827336 Msa0381600:three_prime_UTR 30.0%
TACTGTAATTCTTACTAGTC+AGG - chr3_1:83827585-83827604 Msa0381600:CDS 30.0%
ACTGTAATTCTTACTAGTCA+GGG - chr3_1:83827586-83827605 Msa0381600:CDS 30.0%
GGTGATTTCAAAACATGAAT+TGG + chr3_1:83827691-83827710 None:intergenic 30.0%
TTTCACTAAGGTAACAGTTA+CGG + chr3_1:83827712-83827731 None:intergenic 30.0%
! CTGATTTGATAACTGTTGTA+TGG - chr3_1:83827757-83827776 Msa0381600:CDS 30.0%
CTCAAATGATGTTTCAATGA+CGG - chr3_1:83827933-83827952 Msa0381600:CDS 30.0%
TCTAATCTTGCACAATTTCA+TGG - chr3_1:83828051-83828070 Msa0381600:CDS 30.0%
TTGGTGAAACATTCACTAAT+AGG - chr3_1:83828106-83828125 Msa0381600:CDS 30.0%
GATGCAAATACCAAACAATA+AGG - chr3_1:83828510-83828529 Msa0381600:intron 30.0%
AAATACCAAACAATAAGGTG+TGG - chr3_1:83828515-83828534 Msa0381600:intron 30.0%
AATACCAAACAATAAGGTGT+GGG - chr3_1:83828516-83828535 Msa0381600:intron 30.0%
!!! GTGTTTTGTTTATTCTCGTT+TGG - chr3_1:83828576-83828595 Msa0381600:intron 30.0%
!! TTGCTGATTCAATTTGATCA+GGG + chr3_1:83828934-83828953 None:intergenic 30.0%
!! TTTGCTGATTCAATTTGATC+AGG + chr3_1:83828935-83828954 None:intergenic 30.0%
AATTGAATCAGCAAAGCAAT+TGG - chr3_1:83828940-83828959 Msa0381600:intron 30.0%
TTGTAGGAACTAAACTCAAA+AGG + chr3_1:83829149-83829168 None:intergenic 30.0%
!!! GAGCACCTTATTTTTACAAA+AGG + chr3_1:83829198-83829217 None:intergenic 30.0%
TGAGTTATCATGGTTTCATT+TGG + chr3_1:83829251-83829270 None:intergenic 30.0%
TTGATAAATCATAGCTACTG+CGG + chr3_1:83829283-83829302 None:intergenic 30.0%
ATTGTCTCTATTTATGTTCC+TGG - chr3_1:83829383-83829402 Msa0381600:intron 30.0%
AATCGACAGAAATACACAAA+TGG + chr3_1:83829444-83829463 None:intergenic 30.0%
TCATATGCTCAACTTTCATT+TGG - chr3_1:83829505-83829524 Msa0381600:intron 30.0%
!!! ATTTGGCATAGTTTTATCCT+TGG - chr3_1:83829522-83829541 Msa0381600:intron 30.0%
!!! TTTGGCATAGTTTTATCCTT+GGG - chr3_1:83829523-83829542 Msa0381600:intron 30.0%
GAGAATTGTTTCAATGTACT+TGG - chr3_1:83829692-83829711 Msa0381600:CDS 30.0%
GAATTGTTTCAATGTACTTG+GGG - chr3_1:83829694-83829713 Msa0381600:CDS 30.0%
TTACTCACTAGAGCAAATAT+GGG + chr3_1:83829757-83829776 None:intergenic 30.0%
TTTACTCACTAGAGCAAATA+TGG + chr3_1:83829758-83829777 None:intergenic 30.0%
AATAGATGTACACACAAAAC+GGG + chr3_1:83829868-83829887 None:intergenic 30.0%
CAATAGATGTACACACAAAA+CGG + chr3_1:83829869-83829888 None:intergenic 30.0%
!!! CTAGTTCGCTTTTTAATTTG+TGG - chr3_1:83829921-83829940 Msa0381600:CDS 30.0%
CAAGAGAAAAATCAACTCTT+GGG + chr3_1:83831021-83831040 None:intergenic 30.0%
ACAAGAGAAAAATCAACTCT+TGG + chr3_1:83831022-83831041 None:intergenic 30.0%
!! AGTTGATTTTTCTCTTGTGA+TGG - chr3_1:83831024-83831043 Msa0381600:CDS 30.0%
TTCTCTTGTGATGGTTATTA+TGG - chr3_1:83831033-83831052 Msa0381600:CDS 30.0%
ATCGATGTTGCTATCAAAAT+GGG + chr3_1:83831090-83831109 None:intergenic 30.0%
TATCGATGTTGCTATCAAAA+TGG + chr3_1:83831091-83831110 None:intergenic 30.0%
!! TTTTGATAGCAACATCGATA+TGG - chr3_1:83831091-83831110 Msa0381600:CDS 30.0%
AGAGGAAGAAAGTGAAAACA+CGG + chr3_1:83827014-83827033 None:intergenic 35.0%
TTCACTTTCTTCCTCTCTAT+AGG - chr3_1:83827018-83827037 Msa0381600:three_prime_UTR 35.0%
TCACTTTCTTCCTCTCTATA+GGG - chr3_1:83827019-83827038 Msa0381600:three_prime_UTR 35.0%
TTGAAACAAACCCTATAGAG+AGG + chr3_1:83827032-83827051 None:intergenic 35.0%
! CTCTATAGGGTTTGTTTCAA+TGG - chr3_1:83827032-83827051 Msa0381600:three_prime_UTR 35.0%
! TATAGGGTTTGTTTCAATGG+CGG - chr3_1:83827035-83827054 Msa0381600:three_prime_UTR 35.0%
! TTCATCGTACTTGCGTTTTA+GGG + chr3_1:83827079-83827098 None:intergenic 35.0%
! GTTGGTGTTCTTATTGGTAA+AGG - chr3_1:83827339-83827358 Msa0381600:exon 35.0%
AAGTATCTTCAGATGCAATC+TGG - chr3_1:83827375-83827394 Msa0381600:CDS 35.0%
! GATTCAAGTTACTCGTGATA+TGG - chr3_1:83827404-83827423 Msa0381600:CDS 35.0%
ACTAGGATGGTTGAACTTAT+GGG - chr3_1:83827447-83827466 Msa0381600:CDS 35.0%
CTGTTGTATGGAGTTTCAAT+AGG - chr3_1:83827769-83827788 Msa0381600:CDS 35.0%
CAGTCAGATACAACAAAATC+AGG + chr3_1:83827872-83827891 None:intergenic 35.0%
TGATGTTTCAATGACGGTAA+AGG - chr3_1:83827939-83827958 Msa0381600:CDS 35.0%
ATGACTGTAACTTTACCTCT+TGG - chr3_1:83828087-83828106 Msa0381600:CDS 35.0%
TTAGTGAATGTTTCACCAAG+AGG + chr3_1:83828105-83828124 None:intergenic 35.0%
AAAACACCTCTTATCAGTGA+TGG + chr3_1:83828300-83828319 None:intergenic 35.0%
TGCTCAAATGATGTTGGAAT+TGG - chr3_1:83828365-83828384 Msa0381600:CDS 35.0%
TTTATTAACTAGGCTGAAGC+TGG - chr3_1:83828430-83828449 Msa0381600:intron 35.0%
TTATTAACTAGGCTGAAGCT+GGG - chr3_1:83828431-83828450 Msa0381600:intron 35.0%
ATACCAAACAATAAGGTGTG+GGG - chr3_1:83828517-83828536 Msa0381600:intron 35.0%
GATGAAATATATCCAGTTGC+AGG - chr3_1:83828539-83828558 Msa0381600:intron 35.0%
GGTTTCTTGTGTACATCTTT+AGG - chr3_1:83828607-83828626 Msa0381600:intron 35.0%
TCTTGTGTACATCTTTAGGT+TGG - chr3_1:83828611-83828630 Msa0381600:intron 35.0%
!! CTTTAGGTTGGCCTTATAAT+TGG - chr3_1:83828623-83828642 Msa0381600:intron 35.0%
!! GTTGGCCTTATAATTGGTAA+AGG - chr3_1:83828629-83828648 Msa0381600:intron 35.0%
CTCCTCCTTTACCAATTATA+AGG + chr3_1:83828637-83828656 None:intergenic 35.0%
AATATGAAATCCATGTCGTC+GGG + chr3_1:83828809-83828828 None:intergenic 35.0%
GAATATGAAATCCATGTCGT+CGG + chr3_1:83828810-83828829 None:intergenic 35.0%
TTTCTGTTGATGTATCACCT+GGG + chr3_1:83828889-83828908 None:intergenic 35.0%
!! TGCTGATTCAATTTGATCAG+GGG + chr3_1:83828933-83828952 None:intergenic 35.0%
TTGGTTAATCAAATCCTCAC+TGG - chr3_1:83828959-83828978 Msa0381600:intron 35.0%
!! ATCTGGCTTATCATTTTTGG+AGG - chr3_1:83829014-83829033 Msa0381600:intron 35.0%
!! TCTGGCTTATCATTTTTGGA+GGG - chr3_1:83829015-83829034 Msa0381600:intron 35.0%
! CTGCGCCTTTTGTAAAAATA+AGG - chr3_1:83829190-83829209 Msa0381600:intron 35.0%
!! GTGCTCATATTTTTACAGTG+TGG - chr3_1:83829212-83829231 Msa0381600:intron 35.0%
GAAACCATGATAACTCAAAC+TGG - chr3_1:83829254-83829273 Msa0381600:intron 35.0%
TCAAACAAAATCTAACAGCC+AGG + chr3_1:83829404-83829423 None:intergenic 35.0%
TGATGTACGGTCTGTATAAT+TGG - chr3_1:83829722-83829741 Msa0381600:CDS 35.0%
AGAATCGTCTCAGAAATTCA+GGG - chr3_1:83829963-83829982 Msa0381600:intron 35.0%
TGTTGCTGATCATATGTTTG+TGG + chr3_1:83830424-83830443 None:intergenic 35.0%
CAAACATATGATCAGCAACA+AGG - chr3_1:83830424-83830443 Msa0381600:intron 35.0%
TATGATCAGCAACAAGGTTA+TGG - chr3_1:83830430-83830449 Msa0381600:intron 35.0%
TGATGGTTATTATGGTCCTT+CGG - chr3_1:83831041-83831060 Msa0381600:CDS 35.0%
! GTACTTGAATATTTTCCGGA+AGG - chr3_1:83831149-83831168 Msa0381600:CDS 35.0%
! TATTTTCCGGAAGGTTGAAT+AGG - chr3_1:83831158-83831177 Msa0381600:CDS 35.0%
! GAAAAATGCTAGTCTAACAC+TGG + chr3_1:83831205-83831224 None:intergenic 35.0%
! TCCATGTCATTTGCAGAATT+TGG - chr3_1:83831314-83831333 Msa0381600:CDS 35.0%
ACCAAATTCTGCAAATGACA+TGG + chr3_1:83831318-83831337 None:intergenic 35.0%
!! GGTGTTACTAAAATGAACAC+AGG - chr3_1:83831362-83831381 Msa0381600:five_prime_UTR 35.0%
AGAAAGTGAAAACACGGTGT+GGG + chr3_1:83827008-83827027 None:intergenic 40.0%
AAGAAAGTGAAAACACGGTG+TGG + chr3_1:83827009-83827028 None:intergenic 40.0%
! GTTCATCGTACTTGCGTTTT+AGG + chr3_1:83827080-83827099 None:intergenic 40.0%
AACTTCTTGAGCTCGTTGTT+TGG + chr3_1:83827142-83827161 None:intergenic 40.0%
! TTATCGGACTTGGTTCGTTT+GGG + chr3_1:83827213-83827232 None:intergenic 40.0%
AAACGAACCAAGTCCGATAA+CGG - chr3_1:83827213-83827232 Msa0381600:three_prime_UTR 40.0%
TAAGAATCAAACCCCGATTG+TGG + chr3_1:83827243-83827262 None:intergenic 40.0%
GAAATACCTAATGGTAGGGT+TGG - chr3_1:83827321-83827340 Msa0381600:three_prime_UTR 40.0%
GGTGTTCTTATTGGTAAAGG+AGG - chr3_1:83827342-83827361 Msa0381600:exon 40.0%
CTGATCCTAATTCTCAGACT+AGG - chr3_1:83827430-83827449 Msa0381600:CDS 40.0%
TCCTAATTCTCAGACTAGGA+TGG - chr3_1:83827434-83827453 Msa0381600:CDS 40.0%
ACCATCCTAGTCTGAGAATT+AGG + chr3_1:83827438-83827457 None:intergenic 40.0%
GACTAGGATGGTTGAACTTA+TGG - chr3_1:83827446-83827465 Msa0381600:CDS 40.0%
TATTAACTAGGCTGAAGCTG+GGG - chr3_1:83828432-83828451 Msa0381600:intron 40.0%
!! TATTCTCGTTTGGGTTGATG+TGG - chr3_1:83828586-83828605 Msa0381600:intron 40.0%
! GGCCTTATAATTGGTAAAGG+AGG - chr3_1:83828632-83828651 Msa0381600:intron 40.0%
! AAGAGTATGCAAGCTTCTAC+CGG - chr3_1:83828665-83828684 Msa0381600:intron 40.0%
TTCTGTTGATGTATCACCTG+GGG + chr3_1:83828888-83828907 None:intergenic 40.0%
CTTTCTGTTGATGTATCACC+TGG + chr3_1:83828890-83828909 None:intergenic 40.0%
TAATCAAATCCTCACTGGTG+AGG - chr3_1:83828964-83828983 Msa0381600:intron 40.0%
! GTCTCCAGTTTGAGTTATCA+TGG + chr3_1:83829261-83829280 None:intergenic 40.0%
CAGAATCGTCTCAGAAATTC+AGG - chr3_1:83829962-83829981 Msa0381600:intron 40.0%
AACAAGCTGGTTATGGCTAT+GGG - chr3_1:83830062-83830081 Msa0381600:intron 40.0%
GGTTATGGTCAAGAAAGCTA+TGG - chr3_1:83830358-83830377 Msa0381600:intron 40.0%
AATGCGCAACAACAACAATC+TGG - chr3_1:83830388-83830407 Msa0381600:intron 40.0%
ATGCGCAACAACAACAATCT+GGG - chr3_1:83830389-83830408 Msa0381600:intron 40.0%
CAACAACAACAATCTGGGTA+TGG - chr3_1:83830394-83830413 Msa0381600:intron 40.0%
ATCTGCTTGTGATCCATAGT+TGG + chr3_1:83830509-83830528 None:intergenic 40.0%
!! TTTGCACTTGGCTTTTGAGA+GGG + chr3_1:83830688-83830707 None:intergenic 40.0%
!! ATTTGCACTTGGCTTTTGAG+AGG + chr3_1:83830689-83830708 None:intergenic 40.0%
! TAAACAGGTGGATTTGCACT+TGG + chr3_1:83830700-83830719 None:intergenic 40.0%
AGTGCAAATCCACCTGTTTA+TGG - chr3_1:83830700-83830719 Msa0381600:intron 40.0%
TGTGATTGACCATAAACAGG+TGG + chr3_1:83830712-83830731 None:intergenic 40.0%
GACTGTGATTGACCATAAAC+AGG + chr3_1:83830715-83830734 None:intergenic 40.0%
GAACTATTTCCATATGACGG+CGG + chr3_1:83830907-83830926 None:intergenic 40.0%
GGAAATAGTTCTTATGGTGC+TGG - chr3_1:83830916-83830935 Msa0381600:CDS 40.0%
!! TTATGGTGCTGGTTATGTTC+AGG - chr3_1:83830927-83830946 Msa0381600:CDS 40.0%
GATGGTTATTATGGTCCTTC+GGG - chr3_1:83831042-83831061 Msa0381600:CDS 40.0%
AAATTAAAGCCACATCCCGA+AGG + chr3_1:83831060-83831079 None:intergenic 40.0%
GATGTTGCTATCAAAATGGG+AGG + chr3_1:83831087-83831106 None:intergenic 40.0%
TTAGCTCCTATTCAACCTTC+CGG + chr3_1:83831167-83831186 None:intergenic 40.0%
!! TGCAGAATTTGGTGCAATTG+TGG - chr3_1:83831325-83831344 Msa0381600:exon 40.0%
GTGTGGGAAGGAATTGGATT+AGG + chr3_1:83826992-83827011 None:intergenic 45.0%
! GTTATCGGACTTGGTTCGTT+TGG + chr3_1:83827214-83827233 None:intergenic 45.0%
AGAACACCAACCCTACCATT+AGG + chr3_1:83827330-83827349 None:intergenic 45.0%
!! GGTAGGGTTGGTGTTCTTAT+TGG - chr3_1:83827333-83827352 Msa0381600:three_prime_UTR 45.0%
CATCAATGAAGTCCTTGCTG+AGG - chr3_1:83827503-83827522 Msa0381600:CDS 45.0%
GTGCAACCATCACTGATAAG+AGG - chr3_1:83828291-83828310 Msa0381600:CDS 45.0%
CATCCCCACACCTTATTGTT+TGG + chr3_1:83828523-83828542 None:intergenic 45.0%
CCAAAAAACATGCCTGCAAC+TGG + chr3_1:83828554-83828573 None:intergenic 45.0%
!!! CCAGTTGCAGGCATGTTTTT+TGG - chr3_1:83828551-83828570 Msa0381600:intron 45.0%
TCTGTTGATGTATCACCTGG+GGG + chr3_1:83828887-83828906 None:intergenic 45.0%
GATAACATACCTCACCAGTG+AGG + chr3_1:83828976-83828995 None:intergenic 45.0%
TTGAGGCTGACCTGTTAGAT+TGG - chr3_1:83829653-83829672 Msa0381600:intron 45.0%
TGAGGCTGACCTGTTAGATT+GGG - chr3_1:83829654-83829673 Msa0381600:intron 45.0%
! TGACCTGTTAGATTGGGTTG+AGG - chr3_1:83829660-83829679 Msa0381600:intron 45.0%
!! GACCTGTTAGATTGGGTTGA+GGG - chr3_1:83829661-83829680 Msa0381600:intron 45.0%
TTCCCTCAACCCAATCTAAC+AGG + chr3_1:83829666-83829685 None:intergenic 45.0%
!! TGTTAGATTGGGTTGAGGGA+AGG - chr3_1:83829665-83829684 Msa0381600:intron 45.0%
ACTTGGGGCTTAGTGATGTA+CGG - chr3_1:83829709-83829728 Msa0381600:CDS 45.0%
TATTGGCATCAACGGGAATG+AGG - chr3_1:83829825-83829844 Msa0381600:intron 45.0%
CTCAGAAATTCAGGGAACTC+AGG - chr3_1:83829971-83829990 Msa0381600:intron 45.0%
AGAAATTCAGGGAACTCAGG+TGG - chr3_1:83829974-83829993 Msa0381600:intron 45.0%
CAACAAGCTGGTTATGGCTA+TGG - chr3_1:83830061-83830080 Msa0381600:intron 45.0%
TTACTCCCACTGCCATAACT+GGG + chr3_1:83830463-83830482 None:intergenic 45.0%
ATTACTCCCACTGCCATAAC+TGG + chr3_1:83830464-83830483 None:intergenic 45.0%
GGAGTAATCCAACCCAAGAA+GGG - chr3_1:83830476-83830495 Msa0381600:intron 45.0%
!! AGTAGTGGGTTGGGAAGTTT+GGG + chr3_1:83830536-83830555 None:intergenic 45.0%
TTGAGGAGTTCCTTGTTGGT+TGG + chr3_1:83830581-83830600 None:intergenic 45.0%
! AGACTGTGGTTGACTTCCAT+AGG + chr3_1:83830638-83830657 None:intergenic 45.0%
TATGGAAGTCAACCACAGTC+TGG - chr3_1:83830637-83830656 Msa0381600:intron 45.0%
AGTCAACCACAGTCTGGTTA+TGG - chr3_1:83830643-83830662 Msa0381600:intron 45.0%
TCTGGTTATGGACCTAGCTA+TGG - chr3_1:83830655-83830674 Msa0381600:intron 45.0%
TATTATGGTCCTTCGGGATG+TGG - chr3_1:83831048-83831067 Msa0381600:CDS 45.0%
!!! TTTTTTAAGTTTAAAATTAT+GGG - chr3_1:83829051-83829070 Msa0381600:intron 5.0%
AACACGGTGTGGGAAGGAAT+TGG + chr3_1:83826998-83827017 None:intergenic 50.0%
AGTGAAAACACGGTGTGGGA+AGG + chr3_1:83827004-83827023 None:intergenic 50.0%
! CTTGGTTCGTTTGGGATCGT+AGG + chr3_1:83827205-83827224 None:intergenic 50.0%
!! CGATTGTGGAGCACCGTTAT+CGG + chr3_1:83827229-83827248 None:intergenic 50.0%
! CGATAACGGTGCTCCACAAT+CGG - chr3_1:83827227-83827246 Msa0381600:three_prime_UTR 50.0%
! GATAACGGTGCTCCACAATC+GGG - chr3_1:83827228-83827247 Msa0381600:three_prime_UTR 50.0%
ATAACGGTGCTCCACAATCG+GGG - chr3_1:83827229-83827248 Msa0381600:three_prime_UTR 50.0%
TCGCAGCAAGGTGGTAGTTA+TGG - chr3_1:83827282-83827301 Msa0381600:three_prime_UTR 50.0%
TCAGCAGAAGAAACAGCGTC+AGG + chr3_1:83827477-83827496 None:intergenic 50.0%
AGACGGATGGTTGCACAATC+TGG - chr3_1:83828472-83828491 Msa0381600:intron 50.0%
GACGGATGGTTGCACAATCT+GGG - chr3_1:83828473-83828492 Msa0381600:intron 50.0%
ACGGATGGTTGCACAATCTG+GGG - chr3_1:83828474-83828493 Msa0381600:intron 50.0%
TTCTACCGGAGCACGAATTC+AGG - chr3_1:83828679-83828698 Msa0381600:intron 50.0%
GAGAACCTGAATTCGTGCTC+CGG + chr3_1:83828687-83828706 None:intergenic 50.0%
TCAGGTGGCTATACTCAGCA+AGG - chr3_1:83829989-83830008 Msa0381600:intron 50.0%
!! CCATAACCAGCTTGTTGCAC+AGG + chr3_1:83830058-83830077 None:intergenic 50.0%
CCTGTGCAACAAGCTGGTTA+TGG - chr3_1:83830055-83830074 Msa0381600:intron 50.0%
GATGGACCAGAGTATGATCC+AGG + chr3_1:83830091-83830110 None:intergenic 50.0%
GGCATGTTATACTGCGGTGA+TGG + chr3_1:83830109-83830128 None:intergenic 50.0%
GGCTGAGGCATGTTATACTG+CGG + chr3_1:83830115-83830134 None:intergenic 50.0%
TGAGGAGGATAGCCTGCATA+TGG + chr3_1:83830139-83830158 None:intergenic 50.0%
!! CAGTTGGTGGAATATCCACC+GGG + chr3_1:83830166-83830185 None:intergenic 50.0%
!! CCAGTTGGTGGAATATCCAC+CGG + chr3_1:83830167-83830186 None:intergenic 50.0%
CGGTGGATATTCCACCAACT+GGG - chr3_1:83830165-83830184 Msa0381600:intron 50.0%
TGAGTAGACTGCTGGTGAGA+TGG + chr3_1:83830205-83830224 None:intergenic 50.0%
!! TTTGCTGTTGCTGGGGTTGT+TGG + chr3_1:83830252-83830271 None:intergenic 50.0%
!!! CCAGGATTTTGCTGTTGCTG+GGG + chr3_1:83830259-83830278 None:intergenic 50.0%
!!! CCCAGGATTTTGCTGTTGCT+GGG + chr3_1:83830260-83830279 None:intergenic 50.0%
CCCAGCAACAGCAAAATCCT+GGG - chr3_1:83830257-83830276 Msa0381600:intron 50.0%
CCAGCAACAGCAAAATCCTG+GGG - chr3_1:83830258-83830277 Msa0381600:intron 50.0%
CAGCAACAGCAAAATCCTGG+GGG - chr3_1:83830259-83830278 Msa0381600:intron 50.0%
TACAGTCAACCTCCTTCCTC+TGG - chr3_1:83830316-83830335 Msa0381600:intron 50.0%
TGGCTATAACCAGAGGAAGG+AGG + chr3_1:83830328-83830347 None:intergenic 50.0%
! GGTTGGCTATAACCAGAGGA+AGG + chr3_1:83830331-83830350 None:intergenic 50.0%
TCCTCTGGTTATAGCCAACC+AGG - chr3_1:83830331-83830350 Msa0381600:intron 50.0%
! TCCTGGTTGGCTATAACCAG+AGG + chr3_1:83830335-83830354 None:intergenic 50.0%
TGGTTATAGCCAACCAGGAC+AGG - chr3_1:83830336-83830355 Msa0381600:intron 50.0%
GGTTATAGCCAACCAGGACA+GGG - chr3_1:83830337-83830356 Msa0381600:intron 50.0%
TCTTGACCATAACCCTGTCC+TGG + chr3_1:83830352-83830371 None:intergenic 50.0%
! TATGGCTCTGCTCCCAGTTA+TGG - chr3_1:83830448-83830467 Msa0381600:intron 50.0%
GGGAGTAATCCAACCCAAGA+AGG - chr3_1:83830475-83830494 Msa0381600:intron 50.0%
!! TAGTGGGTTGGGAAGTTTGG+GGG + chr3_1:83830534-83830553 None:intergenic 50.0%
!! GTAGTGGGTTGGGAAGTTTG+GGG + chr3_1:83830535-83830554 None:intergenic 50.0%
!! CAGTAGTGGGTTGGGAAGTT+TGG + chr3_1:83830537-83830556 None:intergenic 50.0%
!! GTTGGTAGCATAGCCTTGCT+GGG + chr3_1:83830563-83830582 None:intergenic 50.0%
GGCTATGCTACCAACCAACA+AGG - chr3_1:83830568-83830587 Msa0381600:intron 50.0%
CTGGTTGAGGAGTTCCTTGT+TGG + chr3_1:83830585-83830604 None:intergenic 50.0%
CAACAAGGAACTCCTCAACC+AGG - chr3_1:83830583-83830602 Msa0381600:intron 50.0%
GCTACTGCATAACCTGGTTG+AGG + chr3_1:83830598-83830617 None:intergenic 50.0%
TTGACTTCCATAGGCCGCTT+GGG + chr3_1:83830629-83830648 None:intergenic 50.0%
CTAGGTCCATAACCAGACTG+TGG + chr3_1:83830652-83830671 None:intergenic 50.0%
TAACTCTGGCTGAGCATACC+CGG + chr3_1:83830797-83830816 None:intergenic 50.0%
TATGATTGCGGACCATACCC+TGG + chr3_1:83830844-83830863 None:intergenic 50.0%
GGGTATGGTCCGCAATCATA+CGG - chr3_1:83830844-83830863 Msa0381600:intron 50.0%
!! TGAGGAGCACCGTATGATTG+CGG + chr3_1:83830856-83830875 None:intergenic 50.0%
CAATCATACGGTGCTCCTCA+AGG - chr3_1:83830856-83830875 Msa0381600:intron 50.0%
! TTCGAGTTCGATGTCCGTGG+CGG + chr3_1:83827109-83827128 None:intergenic 55.0%
! GACTTCGAGTTCGATGTCCG+TGG + chr3_1:83827112-83827131 None:intergenic 55.0%
TTGGGATCGTAGGAGAGTGG+TGG + chr3_1:83827195-83827214 None:intergenic 55.0%
! CGTTTGGGATCGTAGGAGAG+TGG + chr3_1:83827198-83827217 None:intergenic 55.0%
!! TGGAGCACCGTTATCGGACT+TGG + chr3_1:83827223-83827242 None:intergenic 55.0%
AAGCCGCAATACTCGCAGCA+AGG - chr3_1:83827270-83827289 Msa0381600:three_prime_UTR 55.0%
! CCACCTTGCTGCGAGTATTG+CGG + chr3_1:83827276-83827295 None:intergenic 55.0%
CGGATGGTTGCACAATCTGG+GGG - chr3_1:83828475-83828494 Msa0381600:intron 55.0%
ATACCTTTGCATCCTCCCCC+AGG - chr3_1:83828869-83828888 Msa0381600:intron 55.0%
GTTGATGTATCACCTGGGGG+AGG + chr3_1:83828884-83828903 None:intergenic 55.0%
GTAGATGAGCGCAAGTCCCA+AGG + chr3_1:83829542-83829561 None:intergenic 55.0%
GGTTATGGCTATGGGCAACC+TGG - chr3_1:83830070-83830089 Msa0381600:intron 55.0%
GGGCAACCTGGATCATACTC+TGG - chr3_1:83830082-83830101 Msa0381600:intron 55.0%
ATGCCTCAGCCACCATATGC+AGG - chr3_1:83830124-83830143 Msa0381600:intron 55.0%
TAGCCTGCATATGGTGGCTG+AGG + chr3_1:83830130-83830149 None:intergenic 55.0%
GGAGGATAGCCTGCATATGG+TGG + chr3_1:83830136-83830155 None:intergenic 55.0%
GAATATCCACCGGGTTGCTG+AGG + chr3_1:83830157-83830176 None:intergenic 55.0%
CCGGTGGATATTCCACCAAC+TGG - chr3_1:83830164-83830183 Msa0381600:intron 55.0%
!! AGTGGATTGGTCCCAGTTGG+TGG + chr3_1:83830179-83830198 None:intergenic 55.0%
!! TGCAGTGGATTGGTCCCAGT+TGG + chr3_1:83830182-83830201 None:intergenic 55.0%
GGTGAGATGGTGCAGTGGAT+TGG + chr3_1:83830192-83830211 None:intergenic 55.0%
CACCAGCAGTCTACTCATGC+AGG - chr3_1:83830208-83830227 Msa0381600:intron 55.0%
CACCTGCATGAGTAGACTGC+TGG + chr3_1:83830213-83830232 None:intergenic 55.0%
CAGCAGTCTACTCATGCAGG+TGG - chr3_1:83830211-83830230 Msa0381600:intron 55.0%
CCCCAGCAACAGCAAAATCC+TGG - chr3_1:83830256-83830275 Msa0381600:intron 55.0%
!!! CCCCAGGATTTTGCTGTTGC+TGG + chr3_1:83830261-83830280 None:intergenic 55.0%
GTCCTTCACAGCCAGCTGAT+GGG - chr3_1:83830281-83830300 Msa0381600:intron 55.0%
CTGTATGCAGACCCATCAGC+TGG + chr3_1:83830295-83830314 None:intergenic 55.0%
AGCCAACCAGGACAGGGTTA+TGG - chr3_1:83830343-83830362 Msa0381600:intron 55.0%
GACCATAACCCTGTCCTGGT+TGG + chr3_1:83830348-83830367 None:intergenic 55.0%
TCTGCTCCCAGTTATGGCAG+TGG - chr3_1:83830454-83830473 Msa0381600:intron 55.0%
CTGCTCCCAGTTATGGCAGT+GGG - chr3_1:83830455-83830474 Msa0381600:intron 55.0%
! GTTGGAAGCGTGCCCTTCTT+GGG + chr3_1:83830491-83830510 None:intergenic 55.0%
! AGTTGGAAGCGTGCCCTTCT+TGG + chr3_1:83830492-83830511 None:intergenic 55.0%
! GAAGGGCACGCTTCCAACTA+TGG - chr3_1:83830493-83830512 Msa0381600:intron 55.0%
!! AGTGGGTTGGGAAGTTTGGG+GGG + chr3_1:83830533-83830552 None:intergenic 55.0%
!! CTGGGCAACAGTAGTGGGTT+GGG + chr3_1:83830545-83830564 None:intergenic 55.0%
CCTTGCTGGGCAACAGTAGT+GGG + chr3_1:83830550-83830569 None:intergenic 55.0%
!! GGTTGGTAGCATAGCCTTGC+TGG + chr3_1:83830564-83830583 None:intergenic 55.0%
GTAGGGGCTACTGCATAACC+TGG + chr3_1:83830604-83830623 None:intergenic 55.0%
! GTTGACTTCCATAGGCCGCT+TGG + chr3_1:83830630-83830649 None:intergenic 55.0%
!! GCACTTGGCTTTTGAGAGGG+AGG + chr3_1:83830685-83830704 None:intergenic 55.0%
TCACAGTCACCTAGCACAGC+AGG - chr3_1:83830727-83830746 Msa0381600:intron 55.0%
GGGTATGCTCAGCCAGAGTT+AGG - chr3_1:83830796-83830815 Msa0381600:intron 55.0%
GCTCTCTGAGTGCCTAACTC+TGG + chr3_1:83830811-83830830 None:intergenic 55.0%
!! AGAGAGCACCAGTGCAACCA+GGG - chr3_1:83830824-83830843 Msa0381600:intron 55.0%
TCATACGGTGCTCCTCAAGG+TGG - chr3_1:83830859-83830878 Msa0381600:intron 55.0%
TTCCATATGACGGCGGAGTC+TGG + chr3_1:83830900-83830919 None:intergenic 55.0%
TAGCGATGGAGCAACTGCAC+AGG - chr3_1:83830963-83830982 Msa0381600:CDS 55.0%
AACTGCACAGGCTGTTCCAC+AGG - chr3_1:83830975-83830994 Msa0381600:CDS 55.0%
ACTGCACAGGCTGTTCCACA+GGG - chr3_1:83830976-83830995 Msa0381600:CDS 55.0%
ACTTTAGCAACACCGCCCTG+TGG + chr3_1:83830994-83831013 None:intergenic 55.0%
GGAACTTCGCCGCTCATTTC+AGG + chr3_1:83831297-83831316 None:intergenic 55.0%
CGATGAACAACCCACCGCCA+CGG - chr3_1:83827092-83827111 Msa0381600:three_prime_UTR 60.0%
AGTTCGATGTCCGTGGCGGT+GGG + chr3_1:83827105-83827124 None:intergenic 60.0%
GGTGACGCTGAGAAGACGAG+CGG + chr3_1:83827166-83827185 None:intergenic 60.0%
GCTCGTCTTCTCAGCGTCAC+CGG - chr3_1:83827165-83827184 Msa0381600:three_prime_UTR 60.0%
CCGCAATACTCGCAGCAAGG+TGG - chr3_1:83827273-83827292 Msa0381600:three_prime_UTR 60.0%
TAGGCTGAAGCTGGGGCTTC+TGG - chr3_1:83828439-83828458 Msa0381600:intron 60.0%
CTTCTGGCGGTGGCACTAGA+CGG - chr3_1:83828455-83828474 Msa0381600:intron 60.0%
TCACCTGGGGGAGGATGCAA+AGG + chr3_1:83828875-83828894 None:intergenic 60.0%
AGCTAGACGGTGGTCGGGAT+TGG + chr3_1:83830018-83830037 None:intergenic 60.0%
AATCCCGACCACCGTCTAGC+TGG - chr3_1:83830017-83830036 Msa0381600:intron 60.0%
ATCCCGACCACCGTCTAGCT+GGG - chr3_1:83830018-83830037 Msa0381600:intron 60.0%
TGTTGCACAGGAGCAGCAGG+AGG + chr3_1:83830046-83830065 None:intergenic 60.0%
! GCTTGTTGCACAGGAGCAGC+AGG + chr3_1:83830049-83830068 None:intergenic 60.0%
GCTGCTCCTGTGCAACAAGC+TGG - chr3_1:83830049-83830068 Msa0381600:intron 60.0%
GGCTATCCTCCTCAGCAACC+CGG - chr3_1:83830145-83830164 Msa0381600:intron 60.0%
TATCCTCCTCAGCAACCCGG+TGG - chr3_1:83830148-83830167 Msa0381600:intron 60.0%
TATCCACCGGGTTGCTGAGG+AGG + chr3_1:83830154-83830173 None:intergenic 60.0%
CTGCTGGTGAGATGGTGCAG+TGG + chr3_1:83830197-83830216 None:intergenic 60.0%
GGTCCTTCACAGCCAGCTGA+TGG - chr3_1:83830280-83830299 Msa0381600:intron 60.0%
GACCCATCAGCTGGCTGTGA+AGG + chr3_1:83830286-83830305 None:intergenic 60.0%
GAAGCGTGCCCTTCTTGGGT+TGG + chr3_1:83830487-83830506 None:intergenic 60.0%
!! GCTGGGCAACAGTAGTGGGT+TGG + chr3_1:83830546-83830565 None:intergenic 60.0%
CCCACTACTGTTGCCCAGCA+AGG - chr3_1:83830547-83830566 Msa0381600:intron 60.0%
GCCTTGCTGGGCAACAGTAG+TGG + chr3_1:83830551-83830570 None:intergenic 60.0%
AGTAGCCCCTACCTCCCAAG+CGG - chr3_1:83830612-83830631 Msa0381600:intron 60.0%
ATAGGCCGCTTGGGAGGTAG+GGG + chr3_1:83830620-83830639 None:intergenic 60.0%
CATAGGCCGCTTGGGAGGTA+GGG + chr3_1:83830621-83830640 None:intergenic 60.0%
ACTTCCATAGGCCGCTTGGG+AGG + chr3_1:83830626-83830645 None:intergenic 60.0%
!! GAGGGAGGAGCACCATAGCT+AGG + chr3_1:83830670-83830689 None:intergenic 60.0%
CAGTCACCTAGCACAGCAGG+AGG - chr3_1:83830730-83830749 Msa0381600:intron 60.0%
CCATAGCCTCCTGCTGTGCT+AGG + chr3_1:83830739-83830758 None:intergenic 60.0%
CCTAGCACAGCAGGAGGCTA+TGG - chr3_1:83830736-83830755 Msa0381600:intron 60.0%
TCTGGCTGAGCATACCCGGA+AGG + chr3_1:83830793-83830812 None:intergenic 60.0%
!! CAGAGAGCACCAGTGCAACC+AGG - chr3_1:83830823-83830842 Msa0381600:intron 60.0%
GCACCAGTGCAACCAGGGTA+TGG - chr3_1:83830829-83830848 Msa0381600:intron 60.0%
GGACCATACCCTGGTTGCAC+TGG + chr3_1:83830835-83830854 None:intergenic 60.0%
GCTCCAGCGTATGCTAGCGA+TGG - chr3_1:83830949-83830968 Msa0381600:CDS 60.0%
GCTCCATCGCTAGCATACGC+TGG + chr3_1:83830955-83830974 None:intergenic 60.0%
GAGTTCGATGTCCGTGGCGG+TGG + chr3_1:83827106-83827125 None:intergenic 65.0%
! GTAGGAGAGTGGTGGAGCGC+CGG + chr3_1:83827187-83827206 None:intergenic 65.0%
GCTGAAGCTGGGGCTTCTGG+CGG - chr3_1:83828442-83828461 Msa0381600:intron 65.0%
TGGCGGTGGCACTAGACGGA+TGG - chr3_1:83828459-83828478 Msa0381600:intron 65.0%
CAGCTGACTGCCCGACGACA+TGG - chr3_1:83828796-83828815 Msa0381600:intron 65.0%
AGCCCAGCTAGACGGTGGTC+GGG + chr3_1:83830023-83830042 None:intergenic 65.0%
GAGCCCAGCTAGACGGTGGT+CGG + chr3_1:83830024-83830043 None:intergenic 65.0%
GCAGGAGGAGCCCAGCTAGA+CGG + chr3_1:83830031-83830050 None:intergenic 65.0%
CCATAGGCCGCTTGGGAGGT+AGG + chr3_1:83830622-83830641 None:intergenic 65.0%
CCTACCTCCCAAGCGGCCTA+TGG - chr3_1:83830619-83830638 Msa0381600:intron 65.0%
TGAGCATACCCGGAAGGCGG+GGG + chr3_1:83830787-83830806 None:intergenic 65.0%
CTGAGCATACCCGGAAGGCG+GGG + chr3_1:83830788-83830807 None:intergenic 65.0%
GCTGAGCATACCCGGAAGGC+GGG + chr3_1:83830789-83830808 None:intergenic 65.0%
GGCTGAGCATACCCGGAAGG+CGG + chr3_1:83830790-83830809 None:intergenic 65.0%
! TAGCCAGGCTGGCCACCTTG+AGG + chr3_1:83830874-83830893 None:intergenic 65.0%
CAAGGTGGCCAGCCTGGCTA+TGG - chr3_1:83830874-83830893 Msa0381600:CDS 65.0%
GAGTCTGGCCATAGCCAGGC+TGG + chr3_1:83830885-83830904 None:intergenic 65.0%
GGCCAGACTCCGCCGTCATA+TGG - chr3_1:83830895-83830914 Msa0381600:CDS 65.0%
GCACAGGCTGTTCCACAGGG+CGG - chr3_1:83830979-83830998 Msa0381600:CDS 65.0%
GAAGCTGGGGCTTCTGGCGG+TGG - chr3_1:83828445-83828464 Msa0381600:intron 70.0%
GGAGGAGCCCAGCTAGACGG+TGG + chr3_1:83830028-83830047 None:intergenic 70.0%
GCTGGCTGTGAAGGACCCCC+AGG + chr3_1:83830277-83830296 None:intergenic 70.0%
!! GAAGGCGGGGGCTGGCTAGA+GGG + chr3_1:83830775-83830794 None:intergenic 70.0%
TCTAGCCAGCCCCCGCCTTC+CGG - chr3_1:83830775-83830794 Msa0381600:intron 70.0%
GCTCCTCAAGGTGGCCAGCC+TGG - chr3_1:83830868-83830887 Msa0381600:CDS 70.0%
GGCGGAGTCTGGCCATAGCC+AGG + chr3_1:83830889-83830908 None:intergenic 70.0%
!! GGAAGGCGGGGGCTGGCTAG+AGG + chr3_1:83830776-83830795 None:intergenic 75.0%
CTAGCCAGCCCCCGCCTTCC+GGG - chr3_1:83830776-83830795 Msa0381600:intron 75.0%
CATACCCGGAAGGCGGGGGC+TGG + chr3_1:83830783-83830802 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 83826962 83831423 83826962 ID=Msa0381600;Name=Msa0381600
chr3_1 mRNA 83826962 83831423 83826962 ID=Msa0381600-mRNA-1;Parent=Msa0381600;Name=Msa0381600-mRNA-1;_AED=0.07;_eAED=0.07;_QI=89|1|1|1|1|1|5|394|606
chr3_1 exon 83826962 83828420 83826962 ID=Msa0381600-mRNA-1:exon:21694;Parent=Msa0381600-mRNA-1
chr3_1 exon 83829400 83829519 83829400 ID=Msa0381600-mRNA-1:exon:21693;Parent=Msa0381600-mRNA-1
chr3_1 exon 83829685 83829756 83829685 ID=Msa0381600-mRNA-1:exon:21692;Parent=Msa0381600-mRNA-1
chr3_1 exon 83829854 83829943 83829854 ID=Msa0381600-mRNA-1:exon:21691;Parent=Msa0381600-mRNA-1
chr3_1 exon 83830861 83831423 83830861 ID=Msa0381600-mRNA-1:exon:21690;Parent=Msa0381600-mRNA-1
chr3_1 five_prime_UTR 83831335 83831423 83831335 ID=Msa0381600-mRNA-1:five_prime_utr;Parent=Msa0381600-mRNA-1
chr3_1 CDS 83830861 83831334 83830861 ID=Msa0381600-mRNA-1:cds;Parent=Msa0381600-mRNA-1
chr3_1 CDS 83829854 83829943 83829854 ID=Msa0381600-mRNA-1:cds;Parent=Msa0381600-mRNA-1
chr3_1 CDS 83829685 83829756 83829685 ID=Msa0381600-mRNA-1:cds;Parent=Msa0381600-mRNA-1
chr3_1 CDS 83829400 83829519 83829400 ID=Msa0381600-mRNA-1:cds;Parent=Msa0381600-mRNA-1
chr3_1 CDS 83827356 83828420 83827356 ID=Msa0381600-mRNA-1:cds;Parent=Msa0381600-mRNA-1
chr3_1 three_prime_UTR 83826962 83827355 83826962 ID=Msa0381600-mRNA-1:three_prime_utr;Parent=Msa0381600-mRNA-1
Gene Sequence

>Msa0381600

ATGGCGGAAGAAGCACAGTACGCAACCCTAAAACGCAAGTACGATGAACAACCCACCGCCACGGACATCGAACTCGAAGTCGCAAACGCCAAACAACGAGCTCAAGAAGTTGCCGCTCGTCTTCTCAGCGTCACCGGCGCTCCACCACTCTCCTACGATCCCAAACGAACCAAGTCCGATAACGGTGCTCCACAATCGGGGTTTGATTCTTACGATTTGAAGCCGCAATACTCGCAGCAAGGTGGTAGTTATGGTTCTAGTAAGAAGATTGAAATACCTAATGGTAGGGTTGGTGTTCTTATTGGTAAAGGAGGTGAAACTATTAAGTATCTTCAGATGCAATCTGGTGCTAAGATTCAAGTTACTCGTGATATGGATGCTGATCCTAATTCTCAGACTAGGATGGTTGAACTTATGGGTACTCCTGACGCTGTTTCTTCTGCTGAGAAACTCATCAATGAAGTCCTTGCTGAGGCTGAAGCTGGGGCTTCTGGCGGTGGCACTAGACGGATGGTTGCACAATCTGGGGGTGATGAATTTGTGATGCAAATACCAAACAATAAGGTTGGCCTTATAATTGGTAAAGGAGGAGAAACAATAAAGAGTATGCAAGCTTCTACCGGAGCACGAATTCAGGTGATACCTTTGCATCCTCCCCCAGGTGATACATCAACAGAAAGAACATTAAAAATCGATGGGACCCCTGATCAAATTGAATCAGCAAAGCAATTGGTTAATCAAATCCTCACTGGTGAGAATCGTCTCAGAAATTCAGGGAACTCAGGTGGCTATACTCAGCAAGGTTACCAATCCCGACCACCGTCTAGCTGGGCTCCTCCTGCTGCTCCTGTGCAACAAGCTGGTTATGGCTATGGGCAACCTGGATCATACTCTGGTCCATCACCGCAGTATAACATGCCTCAGCCACCATATGCAGGCTATCCTCCTCAGCAACCCGGTGGATATTCCACCAACTGGGACCAATCCACTGCACCATCTCACCAGCAGTCTACTCATGCAGGTGGTTATGATTATTACAACCAACAACCCCAGCAACAGCAAAATCCTGGGGGTCCTTCACAGCCAGCTGATGGGTCTGCATACAGTTACAGTCAACCTCCTTCCTCTGGTTATAGCCAACCAGGACAGGGTTATGGTCAAGAAAGCTATGGTGCGTATAATGCGCAACAACAACAATCTGGGTATGGTCAGCCACAAACATATGATCAGCAACAAGGTTATGGCTCTGCTCCCAGTTATGGCAGTGGGAGTAATCCAACCCAAGAAGGGCACGCTTCCAACTATGGATCACAAGCAGATACCCCCCAAACTTCCCAACCCACTACTGTTGCCCAGCAAGGCTATGCTACCAACCAACAAGGAACTCCTCAACCAGGTTATGCAGTAGCCCCTACCTCCCAAGCGGCCTATGGAAGTCAACCACAGTCTGGTTATGGACCTAGCTATGGTGCTCCTCCCTCTCAAAAGCCAAGTGCAAATCCACCTGTTTATGGTCAATCACAGTCACCTAGCACAGCAGGAGGCTATGGTCAGTCAGCTTATCCCTCTAGCCAGCCCCCGCCTTCCGGGTATGCTCAGCCAGAGTTAGGCACTCAGAGAGCACCAGTGCAACCAGGGTATGGTCCGCAATCATACGGTGCTCCTCAAGGTGGCCAGCCTGGCTATGGCCAGACTCCGCCGTCATATGGAAATAGTTCTTATGGTGCTGGTTATGTTCAGGCTCCAGCGTATGCTAGCGATGGAGCAACTGCACAGGCTGTTCCACAGGGCGGTGTTGCTAAAGTGTCACCCAAGAGTTGA
Protein sequence

>Msa0381600

MAEEAQYATLKRKYDEQPTATDIELEVANAKQRAQEVAARLLSVTGAPPLSYDPKRTKSDNGAPQSGFDSYDLKPQYSQQGGSYGSSKKIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSAEKLINEVLAEAEAGASGGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKSMQASTGARIQVIPLHPPPGDTSTERTLKIDGTPDQIESAKQLVNQILTGENRLRNSGNSGGYTQQGYQSRPPSSWAPPAAPVQQAGYGYGQPGSYSGPSPQYNMPQPPYAGYPPQQPGGYSTNWDQSTAPSHQQSTHAGGYDYYNQQPQQQQNPGGPSQPADGSAYSYSQPPSSGYSQPGQGYGQESYGAYNAQQQQSGYGQPQTYDQQQGYGSAPSYGSGSNPTQEGHASNYGSQADTPQTSQPTTVAQQGYATNQQGTPQPGYAVAPTSQAAYGSQPQSGYGPSYGAPPSQKPSANPPVYGQSQSPSTAGGYGQSAYPSSQPPPSGYAQPELGTQRAPVQPGYGPQSYGAPQGGQPGYGQTPPSYGNSSYGAGYVQAPAYASDGATAQAVPQGGVAKVSPKS*