AlfalfaGEDB | Msa0467740

M. sativa cultivar zhongmu-4 / Msa0467740

KEGG: K02880
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0009506 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:1990904
PFAM: PF00237.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467740	XP_003601798.1	97.802	182	4	0	1	182	1	182	7.37e-131	374

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467740	sp\|P51413\|RL172_ARATH	88.000	175	21	0	1	175	1	175	1.03e-114	326

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467740	G7JC06	97.802	182	4	0	1	182	1	182	3.52e-131	374

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003030	Msa0467740	0.889714	1.890606e-73	-8.615850e-47
Msa0004760	Msa0467740	0.851127	1.086368e-60	-8.615850e-47
Msa0004790	Msa0467740	0.808726	2.687771e-50	-8.615850e-47
Msa0011160	Msa0467740	-0.835054	2.097687e-56	-8.615850e-47
Msa0015100	Msa0467740	-0.806306	8.770735e-50	-8.615850e-47
Msa0029000	Msa0467740	0.854856	9.311661e-62	-8.615850e-47
Msa0042510	Msa0467740	0.874134	8.563981e-68	-8.615850e-47
Msa0049770	Msa0467740	-0.808077	3.696625e-50	-8.615850e-47
Msa0051200	Msa0467740	-0.827490	1.520436e-54	-8.615850e-47
Msa0051460	Msa0467740	-0.836569	8.665470e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467740	MtrunA17_Chr3g0122641	97.802	182	4	0	1	182	1	182	6.78e-135	374
Msa0467740	MtrunA17_Chr8g0377301	97.688	173	4	0	1	173	1	173	8.84e-128	356

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467740	AT1G67430.1	88.000	175	21	0	1	175	1	175	1.05e-115	326
Msa0467740	AT1G27400.1	88.953	172	19	0	1	172	1	172	3.18e-115	325
Msa0467740	AT1G67430.2	65.143	175	17	1	1	175	1	131	1.09e-72	215

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Find 71 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGACGTGCAAAACTCAA+AGG	0.597080	3_3:+69174836	None:intergenic
AAATAAAGGGTCTCAACTAT+TGG	0.372508	3_3:+69175043	None:intergenic
AACAAAGAAGACGTACCTAC+AGG	0.490498	3_3:-69175415	Msa0467740:CDS
AACAACGCAATACCTCTTTC+TGG	0.294555	3_3:+69175218	None:intergenic
AACAGACACTCTAATGGGCA+AGG	0.616551	3_3:-69175691	Msa0467740:CDS
AACATCTTCTAAGTATCTTT+TGG	0.263817	3_3:+69175783	None:intergenic
AACCCTAAGGTCAGCACCTC+TGG	0.343663	3_3:+69176788	None:intergenic
AAGATACTTAGAAGATGTTT+TGG	0.295183	3_3:-69175779	Msa0467740:CDS
AAGGTCAGCACCTCTGGCCT+TGG	0.384955	3_3:+69176794	None:intergenic
AAGTCTCAAGCTGTTCGAAG+TGG	0.631486	3_3:-69175092	Msa0467740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGAAGATTCAGCAAATTA+GGG	+	chr3_3:69174828-69174847	None:intergenic	30.0%
ACAGATCAAAACCACAAATT+AGG	+	chr3_3:69175016-69175035	None:intergenic	30.0%
GTAGAGATAGATCATGATAT+AGG	-	chr3_3:69175118-69175137	Msa0467740:CDS	30.0%
TAGCTGATCTAGTGAATTTA+CGG	-	chr3_3:69175192-69175211	Msa0467740:intron	30.0%
AAACATAAGCCAATCCAAAA+GGG	+	chr3_3:69175219-69175238	None:intergenic	30.0%
AAGTCATAAGTTCTCACTAA+CGG	+	chr3_3:69175330-69175349	None:intergenic	30.0%
GCAATTTATCTATAGGACAT+AGG	+	chr3_3:69175422-69175441	None:intergenic	30.0%
CTAAGAACAAAAACAACAAC+AGG	+	chr3_3:69175946-69175965	None:intergenic	30.0%
TTGTTTGATTGTTCACTTCT+AGG	-	chr3_3:69176343-69176362	Msa0467740:intron	30.0%
AGTGGAGATGAAAATTCAAA+AGG	+	chr3_3:69176655-69176674	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	69174820	69177043	69174820	ID=Msa0467740;Name=Msa0467740
chr3_3	mRNA	69174820	69177043	69174820	ID=Msa0467740-mRNA-1;Parent=Msa0467740;Name=Msa0467740-mRNA-1;_AED=0.09;_eAED=0.09;_QI=78\|1\|1\|1\|1\|1\|6\|259\|182
chr3_3	exon	69174820	69175144	69174820	ID=Msa0467740-mRNA-1:exon:16277;Parent=Msa0467740-mRNA-1
chr3_3	exon	69175231	69175298	69175231	ID=Msa0467740-mRNA-1:exon:16276;Parent=Msa0467740-mRNA-1
chr3_3	exon	69175396	69175498	69175396	ID=Msa0467740-mRNA-1:exon:16275;Parent=Msa0467740-mRNA-1
chr3_3	exon	69175624	69175854	69175624	ID=Msa0467740-mRNA-1:exon:16274;Parent=Msa0467740-mRNA-1
chr3_3	exon	69176779	69176819	69176779	ID=Msa0467740-mRNA-1:exon:16273;Parent=Msa0467740-mRNA-1
chr3_3	exon	69176926	69177043	69176926	ID=Msa0467740-mRNA-1:exon:16272;Parent=Msa0467740-mRNA-1
chr3_3	five_prime_UTR	69176966	69177043	69176966	ID=Msa0467740-mRNA-1:five_prime_utr;Parent=Msa0467740-mRNA-1
chr3_3	CDS	69176926	69176965	69176926	ID=Msa0467740-mRNA-1:cds;Parent=Msa0467740-mRNA-1
chr3_3	CDS	69176779	69176819	69176779	ID=Msa0467740-mRNA-1:cds;Parent=Msa0467740-mRNA-1
chr3_3	CDS	69175624	69175854	69175624	ID=Msa0467740-mRNA-1:cds;Parent=Msa0467740-mRNA-1
chr3_3	CDS	69175396	69175498	69175396	ID=Msa0467740-mRNA-1:cds;Parent=Msa0467740-mRNA-1
chr3_3	CDS	69175231	69175298	69175231	ID=Msa0467740-mRNA-1:cds;Parent=Msa0467740-mRNA-1
chr3_3	CDS	69175079	69175144	69175079	ID=Msa0467740-mRNA-1:cds;Parent=Msa0467740-mRNA-1
chr3_3	three_prime_UTR	69174820	69175078	69174820	ID=Msa0467740-mRNA-1:three_prime_utr;Parent=Msa0467740-mRNA-1

Gene Sequence

>Msa0467740

ATGGTGAAGTACTCCAAAGAGCCCGACAATCCCACCAAATCAACCAAGGCCAGAGGTGCTGACCTTAGGGTTCATTTCAAGAACACCAGGGAAACAGCGTTTGCCATCAGGAAGTTGCCCCTGACCAAAGCCAAAAGATACTTAGAAGATGTTTTGGCCCACAAACAGGCCATTCCTTTCAGACGTTTCTGTCGTGGTGTTGGGAGGACTGCCCAAGCTAAGAACAGACACTCTAATGGGCAAGGACGCTGGCCTGTCAAGTCAGCTAAATTCATTCTTGACTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTCTACGTGTCTCATATCCAGGTCAATCAAGCTCAAAAACAAAGAAGACGTACCTACAGGGCTCATGGAAGAATCAATCCCTACATGTCATCTCCTTGCCACATCGAACTGATACTATCTGAGAAGGAAGAGGCTGTCCAGAAAGAGCCCGAGACCCAGTTGGCAACAAACAAGAAGAAGTCTCAAGCTGTTCGAAGTGGTTCTTCATCATAA

Protein sequence

>Msa0467740

MVKYSKEPDNPTKSTKARGADLRVHFKNTRETAFAIRKLPLTKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVQKEPETQLATNKKKSQAVRSGSSS*