Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467740 | XP_003601798.1 | 97.802 | 182 | 4 | 0 | 1 | 182 | 1 | 182 | 7.37e-131 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467740 | sp|P51413|RL172_ARATH | 88.000 | 175 | 21 | 0 | 1 | 175 | 1 | 175 | 1.03e-114 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467740 | G7JC06 | 97.802 | 182 | 4 | 0 | 1 | 182 | 1 | 182 | 3.52e-131 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa0467740 | 0.889714 | 1.890606e-73 | -8.615850e-47 |
| Msa0004760 | Msa0467740 | 0.851127 | 1.086368e-60 | -8.615850e-47 |
| Msa0004790 | Msa0467740 | 0.808726 | 2.687771e-50 | -8.615850e-47 |
| Msa0011160 | Msa0467740 | -0.835054 | 2.097687e-56 | -8.615850e-47 |
| Msa0015100 | Msa0467740 | -0.806306 | 8.770735e-50 | -8.615850e-47 |
| Msa0029000 | Msa0467740 | 0.854856 | 9.311661e-62 | -8.615850e-47 |
| Msa0042510 | Msa0467740 | 0.874134 | 8.563981e-68 | -8.615850e-47 |
| Msa0049770 | Msa0467740 | -0.808077 | 3.696625e-50 | -8.615850e-47 |
| Msa0051200 | Msa0467740 | -0.827490 | 1.520436e-54 | -8.615850e-47 |
| Msa0051460 | Msa0467740 | -0.836569 | 8.665470e-57 | -8.615850e-47 |
| Msa0063000 | Msa0467740 | -0.801690 | 7.994062e-49 | -8.615850e-47 |
| Msa0079560 | Msa0467740 | 0.874985 | 4.400122e-68 | -8.615850e-47 |
| Msa0093440 | Msa0467740 | -0.831714 | 1.426999e-55 | -8.615850e-47 |
| Msa0094600 | Msa0467740 | 0.811760 | 5.957807e-51 | -8.615850e-47 |
| Msa0094940 | Msa0467740 | 0.839575 | 1.459472e-57 | -8.615850e-47 |
| Msa0101840 | Msa0467740 | -0.804144 | 2.486788e-49 | -8.615850e-47 |
| Msa0103490 | Msa0467740 | 0.804743 | 1.866111e-49 | -8.615850e-47 |
| Msa0127230 | Msa0467740 | 0.879523 | 1.162662e-69 | -8.615850e-47 |
| Msa0128320 | Msa0467740 | 0.807105 | 5.945343e-50 | -8.615850e-47 |
| Msa0143920 | Msa0467740 | -0.822729 | 2.027134e-53 | -8.615850e-47 |
| Msa0146910 | Msa0467740 | 0.889830 | 1.703750e-73 | -8.615850e-47 |
| Msa0164830 | Msa0467740 | -0.802537 | 5.352273e-49 | -8.615850e-47 |
| Msa0226620 | Msa0467740 | 0.839453 | 1.570155e-57 | -8.615850e-47 |
| Msa0370480 | Msa0467740 | -0.803584 | 3.251425e-49 | -8.615850e-47 |
| Msa0373350 | Msa0467740 | 0.922113 | 1.499572e-88 | -8.615850e-47 |
| Msa0376850 | Msa0467740 | 0.812874 | 3.404100e-51 | -8.615850e-47 |
| Msa0377610 | Msa0467740 | 0.930528 | 1.435697e-93 | -8.615850e-47 |
| Msa0379820 | Msa0467740 | -0.822883 | 1.866825e-53 | -8.615850e-47 |
| Msa0379850 | Msa0467740 | -0.828677 | 7.869536e-55 | -8.615850e-47 |
| Msa0381600 | Msa0467740 | 0.818582 | 1.818649e-52 | -8.615850e-47 |
| Msa0383490 | Msa0467740 | 0.878675 | 2.317388e-69 | -8.615850e-47 |
| Msa0387290 | Msa0467740 | 0.805617 | 1.224513e-49 | -8.615850e-47 |
| Msa0388520 | Msa0467740 | 0.807921 | 3.990151e-50 | -8.615850e-47 |
| Msa0388540 | Msa0467740 | 0.900626 | 6.066544e-78 | -8.615850e-47 |
| Msa0421920 | Msa0467740 | 0.926991 | 2.188108e-91 | -8.615850e-47 |
| Msa0426820 | Msa0467740 | 0.925975 | 8.834417e-91 | -8.615850e-47 |
| Msa0427380 | Msa0467740 | 0.886896 | 2.294628e-72 | -8.615850e-47 |
| Msa0429170 | Msa0467740 | -0.824407 | 8.210386e-54 | -8.615850e-47 |
| Msa0438050 | Msa0467740 | -0.839523 | 1.506417e-57 | -8.615850e-47 |
| Msa0440040 | Msa0467740 | -0.818771 | 1.646804e-52 | -8.615850e-47 |
| Msa0457010 | Msa0467740 | -0.801848 | 7.417499e-49 | -8.615850e-47 |
| Msa0467740 | Msa0470230 | 0.808191 | 3.496329e-50 | -8.615850e-47 |
| Msa0467740 | Msa0477670 | 0.837985 | 3.762617e-57 | -8.615850e-47 |
| Msa0467740 | Msa0482190 | 0.811113 | 8.235407e-51 | -8.615850e-47 |
| Msa0467740 | Msa0485500 | 0.811070 | 8.413297e-51 | -8.615850e-47 |
| Msa0467740 | Msa0492740 | -0.813201 | 2.885442e-51 | -8.615850e-47 |
| Msa0467740 | Msa0492880 | -0.809118 | 2.216261e-50 | -8.615850e-47 |
| Msa0467740 | Msa0514130 | 0.998781 | 2.276899e-276 | -8.615850e-47 |
| Msa0467740 | Msa0516830 | 0.812843 | 3.456394e-51 | -8.615850e-47 |
| Msa0467740 | Msa0524340 | 0.809432 | 1.898188e-50 | -8.615850e-47 |
| Msa0467740 | Msa0527900 | -0.820587 | 6.340144e-53 | -8.615850e-47 |
| Msa0467740 | Msa0532810 | 0.869074 | 4.064089e-66 | -8.615850e-47 |
| Msa0467740 | Msa0543900 | -0.806885 | 6.617766e-50 | -8.615850e-47 |
| Msa0467740 | Msa0544930 | -0.805111 | 1.562539e-49 | -8.615850e-47 |
| Msa0467740 | Msa0578010 | 0.825305 | 5.041196e-54 | -8.615850e-47 |
| Msa0467740 | Msa0586150 | -0.807287 | 5.442048e-50 | -8.615850e-47 |
| Msa0467740 | Msa0599770 | -0.801941 | 7.098700e-49 | -8.615850e-47 |
| Msa0467740 | Msa0610380 | 0.821748 | 3.423942e-53 | -8.615850e-47 |
| Msa0467740 | Msa0610890 | -0.810982 | 8.791583e-51 | -8.615850e-47 |
| Msa0467740 | Msa0621170 | 0.810979 | 8.802634e-51 | -8.615850e-47 |
| Msa0467740 | Msa0621190 | 0.895538 | 8.713889e-76 | -8.615850e-47 |
| Msa0467740 | Msa0621750 | 0.824505 | 7.784825e-54 | -8.615850e-47 |
| Msa0467740 | Msa0635470 | -0.822593 | 2.180352e-53 | -8.615850e-47 |
| Msa0467740 | Msa0640380 | -0.821035 | 4.999502e-53 | -8.615850e-47 |
| Msa0467740 | Msa0641020 | -0.827934 | 1.189397e-54 | -8.615850e-47 |
| Msa0467740 | Msa0641030 | -0.803473 | 3.427769e-49 | -8.615850e-47 |
| Msa0467740 | Msa0650910 | 0.813856 | 2.070917e-51 | -8.615850e-47 |
| Msa0467740 | Msa0656450 | 0.861489 | 9.900177e-64 | -8.615850e-47 |
| Msa0467740 | Msa0658570 | -0.820782 | 5.718756e-53 | -8.615850e-47 |
| Msa0467740 | Msa0660870 | -0.843174 | 1.648217e-58 | -8.615850e-47 |
| Msa0467740 | Msa0663330 | -0.842234 | 2.928356e-58 | -8.615850e-47 |
| Msa0467740 | Msa0664020 | -0.844345 | 8.006775e-59 | -8.615850e-47 |
| Msa0467740 | Msa0678820 | -0.806184 | 9.304695e-50 | -8.615850e-47 |
| Msa0467740 | Msa0679560 | -0.804555 | 2.041877e-49 | -8.615850e-47 |
| Msa0467740 | Msa0691760 | 0.843732 | 1.169525e-58 | -8.615850e-47 |
| Msa0467740 | Msa0692850 | 0.829050 | 6.393163e-55 | -8.615850e-47 |
| Msa0467740 | Msa0700370 | 0.911338 | 6.809093e-83 | -8.615850e-47 |
| Msa0467740 | Msa0715720 | -0.814925 | 1.201570e-51 | -8.615850e-47 |
| Msa0467740 | Msa0716750 | -0.836126 | 1.123246e-56 | -8.615850e-47 |
| Msa0467740 | Msa0757980 | -0.804182 | 2.442168e-49 | -8.615850e-47 |
| Msa0467740 | Msa0776030 | -0.826178 | 3.128017e-54 | -8.615850e-47 |
| Msa0467740 | Msa0788960 | 0.802327 | 5.913437e-49 | -8.615850e-47 |
| Msa0467740 | Msa0799280 | -0.839738 | 1.324141e-57 | -8.615850e-47 |
| Msa0467740 | Msa0837500 | -0.802298 | 5.995212e-49 | -8.615850e-47 |
| Msa0467740 | Msa0839230 | -0.808267 | 3.368544e-50 | -8.615850e-47 |
| Msa0467740 | Msa0876850 | 0.830667 | 2.580800e-55 | -8.615850e-47 |
| Msa0467740 | Msa0881160 | -0.800838 | 1.194231e-48 | -8.615850e-47 |
| Msa0467740 | Msa0881210 | 0.813788 | 2.143614e-51 | -8.615850e-47 |
| Msa0467740 | Msa0912470 | -0.830163 | 3.427799e-55 | -8.615850e-47 |
| Msa0467740 | Msa0930360 | 0.845520 | 3.858513e-59 | -8.615850e-47 |
| Msa0467740 | Msa0942080 | 0.841626 | 4.239986e-58 | -8.615850e-47 |
| Msa0467740 | Msa0956570 | -0.801487 | 8.800098e-49 | -8.615850e-47 |
| Msa0467740 | Msa0987570 | 0.834587 | 2.750193e-56 | -8.615850e-47 |
| Msa0467740 | Msa0998890 | 0.904799 | 8.411434e-80 | -8.615850e-47 |
| Msa0467740 | Msa1001200 | -0.824980 | 6.014681e-54 | -8.615850e-47 |
| Msa0467740 | Msa1027870 | 0.837769 | 4.273991e-57 | -8.615850e-47 |
| Msa0467740 | Msa1041600 | 0.867892 | 9.789070e-66 | -8.615850e-47 |
| Msa0467740 | Msa1068200 | 0.818991 | 1.468232e-52 | -8.615850e-47 |
| Msa0467740 | Msa1075080 | 0.869241 | 3.589190e-66 | -8.615850e-47 |
| Msa0467740 | Msa1075220 | 0.817550 | 3.111406e-52 | -8.615850e-47 |
| Msa0467740 | Msa1080790 | -0.826457 | 2.684772e-54 | -8.615850e-47 |
| Msa0467740 | Msa1084850 | 0.827966 | 1.168373e-54 | -8.615850e-47 |
| Msa0467740 | Msa1118930 | -0.821671 | 3.566919e-53 | -8.615850e-47 |
| Msa0467740 | Msa1132950 | -0.803581 | 3.255339e-49 | -8.615850e-47 |
| Msa0467740 | Msa1139000 | 0.827237 | 1.748438e-54 | -8.615850e-47 |
| Msa0467740 | Msa1144630 | 0.867333 | 1.479041e-65 | -8.615850e-47 |
| Msa0467740 | Msa1156340 | 0.825056 | 5.770091e-54 | -8.615850e-47 |
| Msa0467740 | Msa1162550 | 0.808717 | 2.699458e-50 | -8.615850e-47 |
| Msa0467740 | Msa1165700 | 0.924579 | 5.836483e-90 | -8.615850e-47 |
| Msa0467740 | Msa1166500 | 0.865322 | 6.420904e-65 | -8.615850e-47 |
| Msa0467740 | Msa1184530 | -0.803641 | 3.164652e-49 | -8.615850e-47 |
| Msa0467740 | Msa1208340 | -0.806908 | 6.545749e-50 | -8.615850e-47 |
| Msa0467740 | Msa1209560 | -0.866207 | 3.376381e-65 | -8.615850e-47 |
| Msa0467740 | Msa1225730 | 0.850688 | 1.444802e-60 | -8.615850e-47 |
| Msa0467740 | Msa1227350 | 0.837926 | 3.896812e-57 | -8.615850e-47 |
| Msa0467740 | Msa1246040 | -0.863940 | 1.738541e-64 | -8.615850e-47 |
| Msa0467740 | Msa1258380 | 0.811942 | 5.440006e-51 | -8.615850e-47 |
| Msa0467740 | Msa1284800 | 0.856256 | 3.638855e-62 | -8.615850e-47 |
| Msa0467740 | Msa1298910 | -0.831733 | 1.411739e-55 | -8.615850e-47 |
| Msa0467740 | Msa1309880 | -0.812001 | 5.281455e-51 | -8.615850e-47 |
| Msa0467740 | Msa1330530 | -0.835516 | 1.603372e-56 | -8.615850e-47 |
| Msa0467740 | Msa1363930 | 0.866877 | 2.067823e-65 | -8.615850e-47 |
| Msa0467740 | Msa1365040 | 0.815517 | 8.876592e-52 | -8.615850e-47 |
| Msa0467740 | Msa1366540 | 0.880995 | 3.465280e-70 | -8.615850e-47 |
| Msa0467740 | Msa1376890 | -0.819070 | 1.408473e-52 | -8.615850e-47 |
| Msa0467740 | Msa1377070 | -0.827224 | 1.760624e-54 | -8.615850e-47 |
| Msa0467740 | Msa1387750 | 0.908125 | 2.404961e-81 | -8.615850e-47 |
| Msa0467740 | Msa1390160 | 0.804707 | 1.898018e-49 | -8.615850e-47 |
| Msa0467740 | Msa1407550 | 0.805358 | 1.387102e-49 | -8.615850e-47 |
| Msa0467740 | Msa1413570 | 0.852523 | 4.366929e-61 | -8.615850e-47 |
| Msa0467740 | Msa1416140 | 0.877767 | 4.824250e-69 | -8.615850e-47 |
| Msa0467740 | Msa1444250 | 0.801358 | 9.348183e-49 | -8.615850e-47 |
| Msa0467740 | Msa1445250 | -0.823218 | 1.558837e-53 | -8.615850e-47 |
| Msa0467740 | Msa1446510 | 0.811563 | 6.577935e-51 | -8.615850e-47 |
| Msa0467740 | Msa1451620 | 0.841034 | 6.069153e-58 | -8.615850e-47 |
| Msa0467740 | Msa1454860 | -0.807589 | 4.695127e-50 | -8.615850e-47 |
| Msa0467740 | Msa1457670 | 0.827685 | 1.364916e-54 | -8.615850e-47 |
| Msa0467740 | Msa1458550 | -0.806105 | 9.669173e-50 | -8.615850e-47 |
| Msa0467740 | Msa1461810 | 0.869058 | 4.114093e-66 | -8.615850e-47 |
| Msa0467740 | Msa1463510 | 0.817666 | 2.929771e-52 | -8.615850e-47 |
| Msa0467740 | Msa1465890 | 0.874800 | 5.087858e-68 | -8.615850e-47 |
| Msa0467740 | Msa1466810 | -0.822222 | 2.658656e-53 | -8.615850e-47 |
| Msa0256350 | Msa0467740 | 0.827245 | 1.739957e-54 | -8.615850e-47 |
| Msa0260270 | Msa0467740 | 0.846354 | 2.289482e-59 | -8.615850e-47 |
| Msa0266000 | Msa0467740 | 0.829267 | 5.664773e-55 | -8.615850e-47 |
| Msa0304270 | Msa0467740 | 0.830714 | 2.513855e-55 | -8.615850e-47 |
| Msa0304310 | Msa0467740 | 0.808976 | 2.377148e-50 | -8.615850e-47 |
| Msa0307510 | Msa0467740 | -0.802829 | 4.658119e-49 | -8.615850e-47 |
| Msa0334170 | Msa0467740 | -0.819533 | 1.104920e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467740 | MtrunA17_Chr3g0122641 | 97.802 | 182 | 4 | 0 | 1 | 182 | 1 | 182 | 6.78e-135 | 374 |
| Msa0467740 | MtrunA17_Chr8g0377301 | 97.688 | 173 | 4 | 0 | 1 | 173 | 1 | 173 | 8.84e-128 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467740 | AT1G67430.1 | 88.000 | 175 | 21 | 0 | 1 | 175 | 1 | 175 | 1.05e-115 | 326 |
| Msa0467740 | AT1G27400.1 | 88.953 | 172 | 19 | 0 | 1 | 172 | 1 | 172 | 3.18e-115 | 325 |
| Msa0467740 | AT1G67430.2 | 65.143 | 175 | 17 | 1 | 1 | 175 | 1 | 131 | 1.09e-72 | 215 |
Find 71 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGAAGATTCAGCAAATT+AGG | 0.141947 | 3_3:+69177015 | None:intergenic |
| TCTTCATCATAAATTATTAT+TGG | 0.207122 | 3_3:-69175068 | Msa0467740:exon |
| TCTTCTTGTTTGTTGCCAAC+TGG | 0.236433 | 3_3:+69175114 | None:intergenic |
| AACATCTTCTAAGTATCTTT+TGG | 0.263817 | 3_3:+69175783 | None:intergenic |
| CTGACATAATCTATAAATAA+AGG | 0.277715 | 3_3:+69175029 | None:intergenic |
| AACAACGCAATACCTCTTTC+TGG | 0.294555 | 3_3:+69175218 | None:intergenic |
| AAGATACTTAGAAGATGTTT+TGG | 0.295183 | 3_3:-69175779 | Msa0467740:CDS |
| GGTGGGATTGTCGGGCTCTT+TGG | 0.298164 | 3_3:+69176930 | None:intergenic |
| CTTCTTGTTTGTTGCCAACT+GGG | 0.310845 | 3_3:+69175115 | None:intergenic |
| GTTTGTTGCCAACTGGGTCT+CGG | 0.315567 | 3_3:+69175121 | None:intergenic |
| AACCCTAAGGTCAGCACCTC+TGG | 0.343663 | 3_3:+69176788 | None:intergenic |
| GACGTTTCTGTCGTGGTGTT+GGG | 0.366723 | 3_3:-69175732 | Msa0467740:CDS |
| AGGCCAGAGGTGCTGACCTT+AGG | 0.368932 | 3_3:-69176791 | Msa0467740:CDS |
| TGAGAAGATTCAGCAAATTA+GGG | 0.370437 | 3_3:+69177016 | None:intergenic |
| AAATAAAGGGTCTCAACTAT+TGG | 0.372508 | 3_3:+69175043 | None:intergenic |
| TAGAGTGTCTGTTCTTAGCT+TGG | 0.376754 | 3_3:+69175701 | None:intergenic |
| TGACCTTAGGGTTCATTTCA+AGG | 0.383447 | 3_3:-69176778 | Msa0467740:intron |
| AAGGTCAGCACCTCTGGCCT+TGG | 0.384955 | 3_3:+69176794 | None:intergenic |
| TTACATTTGGTGGGATTGTC+GGG | 0.385846 | 3_3:+69176922 | None:intergenic |
| GGCTGCTCTACTAATTCGTC+AGG | 0.391386 | 3_3:+69176966 | None:intergenic |
| GGCCAGAGGTGCTGACCTTA+GGG | 0.395315 | 3_3:-69176790 | Msa0467740:CDS |
| AGACGTTTCTGTCGTGGTGT+TGG | 0.397264 | 3_3:-69175733 | Msa0467740:CDS |
| AGAGTGTCTGTTCTTAGCTT+GGG | 0.404467 | 3_3:+69175702 | None:intergenic |
| GCTAAGAACAGACACTCTAA+TGG | 0.408761 | 3_3:-69175697 | Msa0467740:CDS |
| TTTGTTGCCAACTGGGTCTC+GGG | 0.429555 | 3_3:+69175122 | None:intergenic |
| GGGAAACAGCGTTTGCCATC+AGG | 0.433818 | 3_3:-69175825 | Msa0467740:CDS |
| TGACATAATCTATAAATAAA+GGG | 0.439008 | 3_3:+69175030 | None:intergenic |
| ATTACATTTGGTGGGATTGT+CGG | 0.454131 | 3_3:+69176921 | None:intergenic |
| TCACTTCTAGGTGAAAGGTT+TGG | 0.454273 | 3_3:-69175486 | Msa0467740:intron |
| CTAAGAACAGACACTCTAAT+GGG | 0.469410 | 3_3:-69175696 | Msa0467740:CDS |
| GATGGCAAACGCTGTTTCCC+TGG | 0.472125 | 3_3:+69175828 | None:intergenic |
| ATGAATTTAGCTGACTTGAC+AGG | 0.481469 | 3_3:+69175661 | None:intergenic |
| CTCTTAACACAAACAAGAAA+AGG | 0.485766 | 3_3:+69174818 | None:intergenic |
| TTTATGTTAATTGACTTGCT+TGG | 0.485985 | 3_3:-69174923 | Msa0467740:three_prime_UTR |
| TGAAAGGAATGGCCTGTTTG+TGG | 0.487121 | 3_3:+69175755 | None:intergenic |
| AACAAAGAAGACGTACCTAC+AGG | 0.490498 | 3_3:-69175415 | Msa0467740:CDS |
| GAAAGGAATGGCCTGTTTGT+GGG | 0.496437 | 3_3:+69175756 | None:intergenic |
| CCTTTCAGACGTTTCTGTCG+TGG | 0.497413 | 3_3:-69175739 | Msa0467740:CDS |
| ATTGTTCACTTCTAGGTGAA+AGG | 0.499870 | 3_3:-69175491 | Msa0467740:intron |
| AGACGTACCTACAGGGCTCA+TGG | 0.520971 | 3_3:-69175407 | Msa0467740:CDS |
| ACTCTAATGGGCAAGGACGC+TGG | 0.524787 | 3_3:-69175684 | Msa0467740:CDS |
| AGAGAGGAATTACATTTGGT+GGG | 0.528638 | 3_3:+69176913 | None:intergenic |
| TCTCTACGTGTCTCATATCC+AGG | 0.529280 | 3_3:-69175453 | Msa0467740:CDS |
| GAGAGAGGAATTACATTTGG+TGG | 0.535354 | 3_3:+69176912 | None:intergenic |
| ATCTGTAATTGCAGCAACCA+AGG | 0.554826 | 3_3:-69176811 | Msa0467740:intron |
| GGTCAGGGGCAACTTCCTGA+TGG | 0.558655 | 3_3:+69175810 | None:intergenic |
| GGAAGAGGCTGTCCAGAAAG+AGG | 0.559016 | 3_3:-69175230 | Msa0467740:intron |
| GATTCTTCCATGAGCCCTGT+AGG | 0.559080 | 3_3:+69175400 | None:intergenic |
| TTACCTTGAAATGAACCCTA+AGG | 0.566981 | 3_3:+69176775 | None:intergenic |
| ACGAATTAGTAGAGCAGCCA+TGG | 0.572014 | 3_3:-69176962 | Msa0467740:exon |
| GATACTATCTGAGAAGGAAG+AGG | 0.578357 | 3_3:-69175245 | Msa0467740:CDS |
| CCACGACAGAAACGTCTGAA+AGG | 0.578584 | 3_3:+69175739 | None:intergenic |
| GCTGCTCTACTAATTCGTCA+GGG | 0.587405 | 3_3:+69176967 | None:intergenic |
| AAAGGACGTGCAAAACTCAA+AGG | 0.597080 | 3_3:+69174836 | None:intergenic |
| TGAACTCGATTGTGGGAAGG+AGG | 0.598251 | 3_3:+69176992 | None:intergenic |
| CTAGGTGAAAGGTTTGGATG+TGG | 0.599987 | 3_3:-69175480 | Msa0467740:intron |
| TCTGTAGCCCGAGACCCAGT+TGG | 0.601405 | 3_3:-69175129 | Msa0467740:intron |
| GGGTGAACTCGATTGTGGGA+AGG | 0.604988 | 3_3:+69176989 | None:intergenic |
| GTTTCTGTCGTGGTGTTGGG+AGG | 0.606753 | 3_3:-69175729 | Msa0467740:CDS |
| CTCTTTGGAGTACTTCACCA+TGG | 0.611437 | 3_3:+69176945 | None:intergenic |
| CTGCTCTACTAATTCGTCAG+GGG | 0.613216 | 3_3:+69176968 | None:intergenic |
| ACAAAGAAGACGTACCTACA+GGG | 0.613276 | 3_3:-69175414 | Msa0467740:CDS |
| CGAACTGATACTATCTGAGA+AGG | 0.615825 | 3_3:-69175251 | Msa0467740:CDS |
| AACAGACACTCTAATGGGCA+AGG | 0.616551 | 3_3:-69175691 | Msa0467740:CDS |
| ACAGAAACGTCTGAAAGGAA+TGG | 0.620803 | 3_3:+69175744 | None:intergenic |
| TGCTCTACTAATTCGTCAGG+GGG | 0.629328 | 3_3:+69176969 | None:intergenic |
| AAGTCTCAAGCTGTTCGAAG+TGG | 0.631486 | 3_3:-69175092 | Msa0467740:CDS |
| AGTATCAGTTCGATGTGGCA+AGG | 0.635093 | 3_3:+69175262 | None:intergenic |
| ATTGCAGCAACCAAGGCCAG+AGG | 0.682613 | 3_3:-69176804 | Msa0467740:intron |
| GTGGCAAGGAGATGACATGT+AGG | 0.691037 | 3_3:+69175276 | None:intergenic |
| CAGATAGTATCAGTTCGATG+TGG | 0.705561 | 3_3:+69175257 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAATACATATGAA+GGG | + | chr3_3:69175754-69175773 | None:intergenic | 10.0% |
| !! | TTAAAAATAAATACATATGA+AGG | + | chr3_3:69175755-69175774 | None:intergenic | 10.0% |
| !! | TAAAAATAAATACATATGAA+GGG | + | chr3_3:69175754-69175773 | None:intergenic | 10.0% |
| !! | TTAAAAATAAATACATATGA+AGG | + | chr3_3:69175755-69175774 | None:intergenic | 10.0% |
| !!! | AATTAACTTTTTTATCCAAA+AGG | + | chr3_3:69175484-69175503 | None:intergenic | 15.0% |
| !! | TCTTCATCATAAATTATTAT+TGG | - | chr3_3:69176773-69176792 | Msa0467740:intron | 15.0% |
| !! | TGACATAATCTATAAATAAA+GGG | + | chr3_3:69176814-69176833 | None:intergenic | 15.0% |
| !!! | AATTAACTTTTTTATCCAAA+AGG | + | chr3_3:69175484-69175503 | None:intergenic | 15.0% |
| !! | TCTTCATCATAAATTATTAT+TGG | - | chr3_3:69176773-69176792 | Msa0467740:intron | 15.0% |
| !! | TGACATAATCTATAAATAAA+GGG | + | chr3_3:69176814-69176833 | None:intergenic | 15.0% |
| !! | GATTAATTTAACCTAATTTG+TGG | - | chr3_3:69175002-69175021 | Msa0467740:three_prime_UTR | 20.0% |
| !! | TATTATTCATAATCTTGTCA+AGG | - | chr3_3:69175268-69175287 | Msa0467740:CDS | 20.0% |
| !! | ACAAAATGCAATTTATCTAT+AGG | + | chr3_3:69175429-69175448 | None:intergenic | 20.0% |
| !!! | CGGTGTTTTTTTTTTTTTTT+TGG | - | chr3_3:69176539-69176558 | Msa0467740:intron | 20.0% |
| !! | CTGACATAATCTATAAATAA+AGG | + | chr3_3:69176815-69176834 | None:intergenic | 20.0% |
| !! | GATTAATTTAACCTAATTTG+TGG | - | chr3_3:69175002-69175021 | Msa0467740:three_prime_UTR | 20.0% |
| !! | TATTATTCATAATCTTGTCA+AGG | - | chr3_3:69175268-69175287 | Msa0467740:CDS | 20.0% |
| !! | ACAAAATGCAATTTATCTAT+AGG | + | chr3_3:69175429-69175448 | None:intergenic | 20.0% |
| !!! | CGGTGTTTTTTTTTTTTTTT+TGG | - | chr3_3:69176539-69176558 | Msa0467740:intron | 20.0% |
| !! | CTGACATAATCTATAAATAA+AGG | + | chr3_3:69176815-69176834 | None:intergenic | 20.0% |
| ! | CAATTTATCTATAGGACATA+GGG | + | chr3_3:69175421-69175440 | None:intergenic | 25.0% |
| !!! | ACTTTTTTATCCAAAAGGTA+AGG | + | chr3_3:69175479-69175498 | None:intergenic | 25.0% |
| !! | ATCAGTAGATTAGTTGAAAA+TGG | - | chr3_3:69175706-69175725 | Msa0467740:CDS | 25.0% |
| ! | ATTAGTTGAAAATGGTCATT+TGG | - | chr3_3:69175714-69175733 | Msa0467740:CDS | 25.0% |
| !! | AACATCTTCTAAGTATCTTT+TGG | + | chr3_3:69176061-69176080 | None:intergenic | 25.0% |
| !! | AAGATACTTAGAAGATGTTT+TGG | - | chr3_3:69176062-69176081 | Msa0467740:intron | 25.0% |
| !! | TATTCTTATTTGTGTTTGGA+TGG | - | chr3_3:69176479-69176498 | Msa0467740:intron | 25.0% |
| ! | GCATTCTTATACTTATATAC+TGG | - | chr3_3:69176516-69176535 | Msa0467740:intron | 25.0% |
| ! | TTCTTATACTTATATACTGG+CGG | - | chr3_3:69176519-69176538 | Msa0467740:intron | 25.0% |
| !!! | TTTATGTTAATTGACTTGCT+TGG | - | chr3_3:69176918-69176937 | Msa0467740:intron | 25.0% |
| ! | CAATTTATCTATAGGACATA+GGG | + | chr3_3:69175421-69175440 | None:intergenic | 25.0% |
| !!! | ACTTTTTTATCCAAAAGGTA+AGG | + | chr3_3:69175479-69175498 | None:intergenic | 25.0% |
| !! | ATCAGTAGATTAGTTGAAAA+TGG | - | chr3_3:69175706-69175725 | Msa0467740:CDS | 25.0% |
| ! | ATTAGTTGAAAATGGTCATT+TGG | - | chr3_3:69175714-69175733 | Msa0467740:CDS | 25.0% |
| !! | AACATCTTCTAAGTATCTTT+TGG | + | chr3_3:69176061-69176080 | None:intergenic | 25.0% |
| !! | AAGATACTTAGAAGATGTTT+TGG | - | chr3_3:69176062-69176081 | Msa0467740:intron | 25.0% |
| !! | TATTCTTATTTGTGTTTGGA+TGG | - | chr3_3:69176479-69176498 | Msa0467740:intron | 25.0% |
| ! | GCATTCTTATACTTATATAC+TGG | - | chr3_3:69176516-69176535 | Msa0467740:intron | 25.0% |
| ! | TTCTTATACTTATATACTGG+CGG | - | chr3_3:69176519-69176538 | Msa0467740:intron | 25.0% |
| !!! | TTTATGTTAATTGACTTGCT+TGG | - | chr3_3:69176918-69176937 | Msa0467740:intron | 25.0% |
| TGAGAAGATTCAGCAAATTA+GGG | + | chr3_3:69174828-69174847 | None:intergenic | 30.0% | |
| ACAGATCAAAACCACAAATT+AGG | + | chr3_3:69175016-69175035 | None:intergenic | 30.0% | |
| GTAGAGATAGATCATGATAT+AGG | - | chr3_3:69175118-69175137 | Msa0467740:CDS | 30.0% | |
| TAGCTGATCTAGTGAATTTA+CGG | - | chr3_3:69175192-69175211 | Msa0467740:intron | 30.0% | |
| AAACATAAGCCAATCCAAAA+GGG | + | chr3_3:69175219-69175238 | None:intergenic | 30.0% | |
| AAGTCATAAGTTCTCACTAA+CGG | + | chr3_3:69175330-69175349 | None:intergenic | 30.0% | |
| GCAATTTATCTATAGGACAT+AGG | + | chr3_3:69175422-69175441 | None:intergenic | 30.0% | |
| CTAAGAACAAAAACAACAAC+AGG | + | chr3_3:69175946-69175965 | None:intergenic | 30.0% | |
| !!! | TTCTAAGTATCTTTTGGCTT+TGG | + | chr3_3:69176055-69176074 | None:intergenic | 30.0% |
| TTGTTTGATTGTTCACTTCT+AGG | - | chr3_3:69176343-69176362 | Msa0467740:intron | 30.0% | |
| ! | GCACTATTCTTATTTGTGTT+TGG | - | chr3_3:69176475-69176494 | Msa0467740:intron | 30.0% |
| AGTGGAGATGAAAATTCAAA+AGG | + | chr3_3:69176655-69176674 | None:intergenic | 30.0% | |
| ! | ATTTTCATCTCCACTCTAAA+AGG | - | chr3_3:69176660-69176679 | Msa0467740:intron | 30.0% |
| !! | TTTTCATCTCCACTCTAAAA+GGG | - | chr3_3:69176661-69176680 | Msa0467740:intron | 30.0% |
| AAATAAAGGGTCTCAACTAT+TGG | + | chr3_3:69176801-69176820 | None:intergenic | 30.0% | |
| !! | GACTTGCTTGGAAAATTTTA+TGG | - | chr3_3:69176930-69176949 | Msa0467740:CDS | 30.0% |
| ! | TTGCTTGGAAAATTTTATGG+TGG | - | chr3_3:69176933-69176952 | Msa0467740:CDS | 30.0% |
| !!! | GATTCAAGTTTTGTTTACCA+TGG | - | chr3_3:69176969-69176988 | Msa0467740:five_prime_UTR | 30.0% |
| !!! | AACTCAAAGGTATTTTAACG+AGG | + | chr3_3:69176995-69177014 | None:intergenic | 30.0% |
| TGAGAAGATTCAGCAAATTA+GGG | + | chr3_3:69174828-69174847 | None:intergenic | 30.0% | |
| ACAGATCAAAACCACAAATT+AGG | + | chr3_3:69175016-69175035 | None:intergenic | 30.0% | |
| GTAGAGATAGATCATGATAT+AGG | - | chr3_3:69175118-69175137 | Msa0467740:CDS | 30.0% | |
| TAGCTGATCTAGTGAATTTA+CGG | - | chr3_3:69175192-69175211 | Msa0467740:intron | 30.0% | |
| AAACATAAGCCAATCCAAAA+GGG | + | chr3_3:69175219-69175238 | None:intergenic | 30.0% | |
| AAGTCATAAGTTCTCACTAA+CGG | + | chr3_3:69175330-69175349 | None:intergenic | 30.0% | |
| GCAATTTATCTATAGGACAT+AGG | + | chr3_3:69175422-69175441 | None:intergenic | 30.0% | |
| CTAAGAACAAAAACAACAAC+AGG | + | chr3_3:69175946-69175965 | None:intergenic | 30.0% | |
| !!! | TTCTAAGTATCTTTTGGCTT+TGG | + | chr3_3:69176055-69176074 | None:intergenic | 30.0% |
| TTGTTTGATTGTTCACTTCT+AGG | - | chr3_3:69176343-69176362 | Msa0467740:intron | 30.0% | |
| ! | GCACTATTCTTATTTGTGTT+TGG | - | chr3_3:69176475-69176494 | Msa0467740:intron | 30.0% |
| AGTGGAGATGAAAATTCAAA+AGG | + | chr3_3:69176655-69176674 | None:intergenic | 30.0% | |
| ! | ATTTTCATCTCCACTCTAAA+AGG | - | chr3_3:69176660-69176679 | Msa0467740:intron | 30.0% |
| !! | TTTTCATCTCCACTCTAAAA+GGG | - | chr3_3:69176661-69176680 | Msa0467740:intron | 30.0% |
| AAATAAAGGGTCTCAACTAT+TGG | + | chr3_3:69176801-69176820 | None:intergenic | 30.0% | |
| !! | GACTTGCTTGGAAAATTTTA+TGG | - | chr3_3:69176930-69176949 | Msa0467740:CDS | 30.0% |
| ! | TTGCTTGGAAAATTTTATGG+TGG | - | chr3_3:69176933-69176952 | Msa0467740:CDS | 30.0% |
| !!! | GATTCAAGTTTTGTTTACCA+TGG | - | chr3_3:69176969-69176988 | Msa0467740:five_prime_UTR | 30.0% |
| !!! | AACTCAAAGGTATTTTAACG+AGG | + | chr3_3:69176995-69177014 | None:intergenic | 30.0% |
| CTGAGAAGATTCAGCAAATT+AGG | + | chr3_3:69174829-69174848 | None:intergenic | 35.0% | |
| ! | ATTACATTTGGTGGGATTGT+CGG | + | chr3_3:69174923-69174942 | None:intergenic | 35.0% |
| AGAGAGGAATTACATTTGGT+GGG | + | chr3_3:69174931-69174950 | None:intergenic | 35.0% | |
| ATCGAGAGAGGAATTACATT+TGG | + | chr3_3:69174935-69174954 | None:intergenic | 35.0% | |
| ATGAAAGAAGAAATCGAGAG+AGG | + | chr3_3:69174947-69174966 | None:intergenic | 35.0% | |
| TTACCTTGAAATGAACCCTA+AGG | + | chr3_3:69175069-69175088 | None:intergenic | 35.0% | |
| AGCTGATCTAGTGAATTTAC+GGG | - | chr3_3:69175193-69175212 | Msa0467740:intron | 35.0% | |
| CAAACATAAGCCAATCCAAA+AGG | + | chr3_3:69175220-69175239 | None:intergenic | 35.0% | |
| TATAGGACATAGGGTTCATT+TGG | + | chr3_3:69175412-69175431 | None:intergenic | 35.0% | |
| ! | TTATAACCTGCCTTACCTTT+TGG | - | chr3_3:69175466-69175485 | Msa0467740:CDS | 35.0% |
| ! | TTTTATCCAAAAGGTAAGGC+AGG | + | chr3_3:69175475-69175494 | None:intergenic | 35.0% |
| ! | AACTATCCTTTGAGAGCATA+GGG | - | chr3_3:69175608-69175627 | Msa0467740:intron | 35.0% |
| TTATTTCCCTATGCTCTCAA+AGG | + | chr3_3:69175617-69175636 | None:intergenic | 35.0% | |
| TAAGCACTAATGAGAATCGT+TGG | + | chr3_3:69175685-69175704 | None:intergenic | 35.0% | |
| ATACATATGAAGGGCAAGTT+TGG | + | chr3_3:69175745-69175764 | None:intergenic | 35.0% | |
| !!! | TCAATTTTGGTGGACTAGTT+TGG | - | chr3_3:69175900-69175919 | Msa0467740:intron | 35.0% |
| CTAAGAACAGACACTCTAAT+GGG | - | chr3_3:69176145-69176164 | Msa0467740:intron | 35.0% | |
| !! | ATGAATTTAGCTGACTTGAC+AGG | + | chr3_3:69176183-69176202 | None:intergenic | 35.0% |
| ATTGTTCACTTCTAGGTGAA+AGG | - | chr3_3:69176350-69176369 | Msa0467740:intron | 35.0% | |
| !! | GATACAATACCCTTTTAGAG+TGG | + | chr3_3:69176673-69176692 | None:intergenic | 35.0% |
| CTGAGAAGATTCAGCAAATT+AGG | + | chr3_3:69174829-69174848 | None:intergenic | 35.0% | |
| ! | ATTACATTTGGTGGGATTGT+CGG | + | chr3_3:69174923-69174942 | None:intergenic | 35.0% |
| AGAGAGGAATTACATTTGGT+GGG | + | chr3_3:69174931-69174950 | None:intergenic | 35.0% | |
| ATCGAGAGAGGAATTACATT+TGG | + | chr3_3:69174935-69174954 | None:intergenic | 35.0% | |
| ATGAAAGAAGAAATCGAGAG+AGG | + | chr3_3:69174947-69174966 | None:intergenic | 35.0% | |
| TTACCTTGAAATGAACCCTA+AGG | + | chr3_3:69175069-69175088 | None:intergenic | 35.0% | |
| AGCTGATCTAGTGAATTTAC+GGG | - | chr3_3:69175193-69175212 | Msa0467740:intron | 35.0% | |
| CAAACATAAGCCAATCCAAA+AGG | + | chr3_3:69175220-69175239 | None:intergenic | 35.0% | |
| TATAGGACATAGGGTTCATT+TGG | + | chr3_3:69175412-69175431 | None:intergenic | 35.0% | |
| ! | TTATAACCTGCCTTACCTTT+TGG | - | chr3_3:69175466-69175485 | Msa0467740:CDS | 35.0% |
| ! | TTTTATCCAAAAGGTAAGGC+AGG | + | chr3_3:69175475-69175494 | None:intergenic | 35.0% |
| ! | AACTATCCTTTGAGAGCATA+GGG | - | chr3_3:69175608-69175627 | Msa0467740:intron | 35.0% |
| TTATTTCCCTATGCTCTCAA+AGG | + | chr3_3:69175617-69175636 | None:intergenic | 35.0% | |
| TAAGCACTAATGAGAATCGT+TGG | + | chr3_3:69175685-69175704 | None:intergenic | 35.0% | |
| ATACATATGAAGGGCAAGTT+TGG | + | chr3_3:69175745-69175764 | None:intergenic | 35.0% | |
| !!! | TCAATTTTGGTGGACTAGTT+TGG | - | chr3_3:69175900-69175919 | Msa0467740:intron | 35.0% |
| CTAAGAACAGACACTCTAAT+GGG | - | chr3_3:69176145-69176164 | Msa0467740:intron | 35.0% | |
| !! | ATGAATTTAGCTGACTTGAC+AGG | + | chr3_3:69176183-69176202 | None:intergenic | 35.0% |
| ATTGTTCACTTCTAGGTGAA+AGG | - | chr3_3:69176350-69176369 | Msa0467740:intron | 35.0% | |
| !! | GATACAATACCCTTTTAGAG+TGG | + | chr3_3:69176673-69176692 | None:intergenic | 35.0% |
| ! | TTACATTTGGTGGGATTGTC+GGG | + | chr3_3:69174922-69174941 | None:intergenic | 40.0% |
| GAGAGAGGAATTACATTTGG+TGG | + | chr3_3:69174932-69174951 | None:intergenic | 40.0% | |
| ATCTGTAATTGCAGCAACCA+AGG | - | chr3_3:69175030-69175049 | Msa0467740:three_prime_UTR | 40.0% | |
| TGACCTTAGGGTTCATTTCA+AGG | - | chr3_3:69175063-69175082 | Msa0467740:exon | 40.0% | |
| GACATAGGGTTCATTTGGAT+TGG | + | chr3_3:69175407-69175426 | None:intergenic | 40.0% | |
| ! | GAACTATCCTTTGAGAGCAT+AGG | - | chr3_3:69175607-69175626 | Msa0467740:intron | 40.0% |
| GAGAATCGTTGGAAGACATA+TGG | + | chr3_3:69175674-69175693 | None:intergenic | 40.0% | |
| ! | GGCAAATCAAGTGGGTTTAA+AGG | + | chr3_3:69175812-69175831 | None:intergenic | 40.0% |
| ACCATCATGGCAAATCAAGT+GGG | + | chr3_3:69175820-69175839 | None:intergenic | 40.0% | |
| !!! | TTTCCCCTTGGTGTCAATTT+TGG | - | chr3_3:69175887-69175906 | Msa0467740:intron | 40.0% |
| TCCACCAAAATTGACACCAA+GGG | + | chr3_3:69175894-69175913 | None:intergenic | 40.0% | |
| ! | ATTTTACTGTGCAGAACACC+AGG | - | chr3_3:69175995-69176014 | Msa0467740:intron | 40.0% |
| ! | TTTTACTGTGCAGAACACCA+GGG | - | chr3_3:69175996-69176015 | Msa0467740:intron | 40.0% |
| !!! | TATCTTTTGGCTTTGGTCAG+GGG | + | chr3_3:69176048-69176067 | None:intergenic | 40.0% |
| !!! | GTATCTTTTGGCTTTGGTCA+GGG | + | chr3_3:69176049-69176068 | None:intergenic | 40.0% |
| !!! | AGTATCTTTTGGCTTTGGTC+AGG | + | chr3_3:69176050-69176069 | None:intergenic | 40.0% |
| ACAGAAACGTCTGAAAGGAA+TGG | + | chr3_3:69176100-69176119 | None:intergenic | 40.0% | |
| ! | AGAGTGTCTGTTCTTAGCTT+GGG | + | chr3_3:69176142-69176161 | None:intergenic | 40.0% |
| ! | TAGAGTGTCTGTTCTTAGCT+TGG | + | chr3_3:69176143-69176162 | None:intergenic | 40.0% |
| GCTAAGAACAGACACTCTAA+TGG | - | chr3_3:69176144-69176163 | Msa0467740:intron | 40.0% | |
| TGCAGTTTGATGCGTTTAAC+TGG | - | chr3_3:69176300-69176319 | Msa0467740:intron | 40.0% | |
| TCACTTCTAGGTGAAAGGTT+TGG | - | chr3_3:69176355-69176374 | Msa0467740:intron | 40.0% | |
| !! | GTTTTTGAGCTTGATTGACC+TGG | + | chr3_3:69176409-69176428 | None:intergenic | 40.0% |
| AACAAAGAAGACGTACCTAC+AGG | - | chr3_3:69176426-69176445 | Msa0467740:intron | 40.0% | |
| ACAAAGAAGACGTACCTACA+GGG | - | chr3_3:69176427-69176446 | Msa0467740:intron | 40.0% | |
| CAGATAGTATCAGTTCGATG+TGG | + | chr3_3:69176587-69176606 | None:intergenic | 40.0% | |
| CGAACTGATACTATCTGAGA+AGG | - | chr3_3:69176590-69176609 | Msa0467740:intron | 40.0% | |
| GATACTATCTGAGAAGGAAG+AGG | - | chr3_3:69176596-69176615 | Msa0467740:intron | 40.0% | |
| AACAACGCAATACCTCTTTC+TGG | + | chr3_3:69176626-69176645 | None:intergenic | 40.0% | |
| ! | CTTCTTGTTTGTTGCCAACT+GGG | + | chr3_3:69176729-69176748 | None:intergenic | 40.0% |
| ! | TCTTCTTGTTTGTTGCCAAC+TGG | + | chr3_3:69176730-69176749 | None:intergenic | 40.0% |
| !!! | AAGGTATTTTAACGAGGCCA+TGG | + | chr3_3:69176989-69177008 | None:intergenic | 40.0% |
| AAAGGACGTGCAAAACTCAA+AGG | + | chr3_3:69177008-69177027 | None:intergenic | 40.0% | |
| ! | TTACATTTGGTGGGATTGTC+GGG | + | chr3_3:69174922-69174941 | None:intergenic | 40.0% |
| GAGAGAGGAATTACATTTGG+TGG | + | chr3_3:69174932-69174951 | None:intergenic | 40.0% | |
| ATCTGTAATTGCAGCAACCA+AGG | - | chr3_3:69175030-69175049 | Msa0467740:three_prime_UTR | 40.0% | |
| TGACCTTAGGGTTCATTTCA+AGG | - | chr3_3:69175063-69175082 | Msa0467740:exon | 40.0% | |
| GACATAGGGTTCATTTGGAT+TGG | + | chr3_3:69175407-69175426 | None:intergenic | 40.0% | |
| ! | GAACTATCCTTTGAGAGCAT+AGG | - | chr3_3:69175607-69175626 | Msa0467740:intron | 40.0% |
| GAGAATCGTTGGAAGACATA+TGG | + | chr3_3:69175674-69175693 | None:intergenic | 40.0% | |
| ! | GGCAAATCAAGTGGGTTTAA+AGG | + | chr3_3:69175812-69175831 | None:intergenic | 40.0% |
| ACCATCATGGCAAATCAAGT+GGG | + | chr3_3:69175820-69175839 | None:intergenic | 40.0% | |
| !!! | TTTCCCCTTGGTGTCAATTT+TGG | - | chr3_3:69175887-69175906 | Msa0467740:intron | 40.0% |
| TCCACCAAAATTGACACCAA+GGG | + | chr3_3:69175894-69175913 | None:intergenic | 40.0% | |
| ! | ATTTTACTGTGCAGAACACC+AGG | - | chr3_3:69175995-69176014 | Msa0467740:intron | 40.0% |
| ! | TTTTACTGTGCAGAACACCA+GGG | - | chr3_3:69175996-69176015 | Msa0467740:intron | 40.0% |
| !!! | TATCTTTTGGCTTTGGTCAG+GGG | + | chr3_3:69176048-69176067 | None:intergenic | 40.0% |
| !!! | GTATCTTTTGGCTTTGGTCA+GGG | + | chr3_3:69176049-69176068 | None:intergenic | 40.0% |
| !!! | AGTATCTTTTGGCTTTGGTC+AGG | + | chr3_3:69176050-69176069 | None:intergenic | 40.0% |
| ACAGAAACGTCTGAAAGGAA+TGG | + | chr3_3:69176100-69176119 | None:intergenic | 40.0% | |
| ! | AGAGTGTCTGTTCTTAGCTT+GGG | + | chr3_3:69176142-69176161 | None:intergenic | 40.0% |
| ! | TAGAGTGTCTGTTCTTAGCT+TGG | + | chr3_3:69176143-69176162 | None:intergenic | 40.0% |
| GCTAAGAACAGACACTCTAA+TGG | - | chr3_3:69176144-69176163 | Msa0467740:intron | 40.0% | |
| TGCAGTTTGATGCGTTTAAC+TGG | - | chr3_3:69176300-69176319 | Msa0467740:intron | 40.0% | |
| TCACTTCTAGGTGAAAGGTT+TGG | - | chr3_3:69176355-69176374 | Msa0467740:intron | 40.0% | |
| !! | GTTTTTGAGCTTGATTGACC+TGG | + | chr3_3:69176409-69176428 | None:intergenic | 40.0% |
| AACAAAGAAGACGTACCTAC+AGG | - | chr3_3:69176426-69176445 | Msa0467740:intron | 40.0% | |
| ACAAAGAAGACGTACCTACA+GGG | - | chr3_3:69176427-69176446 | Msa0467740:intron | 40.0% | |
| CAGATAGTATCAGTTCGATG+TGG | + | chr3_3:69176587-69176606 | None:intergenic | 40.0% | |
| CGAACTGATACTATCTGAGA+AGG | - | chr3_3:69176590-69176609 | Msa0467740:intron | 40.0% | |
| GATACTATCTGAGAAGGAAG+AGG | - | chr3_3:69176596-69176615 | Msa0467740:intron | 40.0% | |
| AACAACGCAATACCTCTTTC+TGG | + | chr3_3:69176626-69176645 | None:intergenic | 40.0% | |
| ! | CTTCTTGTTTGTTGCCAACT+GGG | + | chr3_3:69176729-69176748 | None:intergenic | 40.0% |
| ! | TCTTCTTGTTTGTTGCCAAC+TGG | + | chr3_3:69176730-69176749 | None:intergenic | 40.0% |
| !!! | AAGGTATTTTAACGAGGCCA+TGG | + | chr3_3:69176989-69177008 | None:intergenic | 40.0% |
| AAAGGACGTGCAAAACTCAA+AGG | + | chr3_3:69177008-69177027 | None:intergenic | 40.0% | |
| TGCTCTACTAATTCGTCAGG+GGG | + | chr3_3:69174875-69174894 | None:intergenic | 45.0% | |
| CTGCTCTACTAATTCGTCAG+GGG | + | chr3_3:69174876-69174895 | None:intergenic | 45.0% | |
| GCTGCTCTACTAATTCGTCA+GGG | + | chr3_3:69174877-69174896 | None:intergenic | 45.0% | |
| ACGAATTAGTAGAGCAGCCA+TGG | - | chr3_3:69174879-69174898 | Msa0467740:three_prime_UTR | 45.0% | |
| !! | CTCTTTGGAGTACTTCACCA+TGG | + | chr3_3:69174899-69174918 | None:intergenic | 45.0% |
| ! | AGTGAATTTACGGGCCCTTT+TGG | - | chr3_3:69175202-69175221 | Msa0467740:intron | 45.0% |
| ! | ATTTACGGGCCCTTTTGGAT+TGG | - | chr3_3:69175207-69175226 | Msa0467740:intron | 45.0% |
| !! | ACCCACTTGATTTGCCATGA+TGG | - | chr3_3:69175816-69175835 | Msa0467740:CDS | 45.0% |
| CACCATCATGGCAAATCAAG+TGG | + | chr3_3:69175821-69175840 | None:intergenic | 45.0% | |
| !! | TTGCCATGATGGTGTTGACT+TGG | - | chr3_3:69175827-69175846 | Msa0467740:CDS | 45.0% |
| !! | TGCCATGATGGTGTTGACTT+GGG | - | chr3_3:69175828-69175847 | Msa0467740:CDS | 45.0% |
| AACAAACCTGAGACCTTTGG+AGG | + | chr3_3:69175869-69175888 | None:intergenic | 45.0% | |
| GGAAACAAACCTGAGACCTT+TGG | + | chr3_3:69175872-69175891 | None:intergenic | 45.0% | |
| CCACCAAAATTGACACCAAG+GGG | + | chr3_3:69175893-69175912 | None:intergenic | 45.0% | |
| GTCCACCAAAATTGACACCA+AGG | + | chr3_3:69175895-69175914 | None:intergenic | 45.0% | |
| !!! | AGATGTTTTGGCCCACAAAC+AGG | - | chr3_3:69176074-69176093 | Msa0467740:intron | 45.0% |
| GAAAGGAATGGCCTGTTTGT+GGG | + | chr3_3:69176088-69176107 | None:intergenic | 45.0% | |
| TGAAAGGAATGGCCTGTTTG+TGG | + | chr3_3:69176089-69176108 | None:intergenic | 45.0% | |
| ! | AACAGACACTCTAATGGGCA+AGG | - | chr3_3:69176150-69176169 | Msa0467740:intron | 45.0% |
| CTAGGTGAAAGGTTTGGATG+TGG | - | chr3_3:69176361-69176380 | Msa0467740:intron | 45.0% | |
| TCTCTACGTGTCTCATATCC+AGG | - | chr3_3:69176388-69176407 | Msa0467740:intron | 45.0% | |
| AGTATCAGTTCGATGTGGCA+AGG | + | chr3_3:69176582-69176601 | None:intergenic | 45.0% | |
| AAGTCTCAAGCTGTTCGAAG+TGG | - | chr3_3:69176749-69176768 | Msa0467740:intron | 45.0% | |
| TGCTCTACTAATTCGTCAGG+GGG | + | chr3_3:69174875-69174894 | None:intergenic | 45.0% | |
| CTGCTCTACTAATTCGTCAG+GGG | + | chr3_3:69174876-69174895 | None:intergenic | 45.0% | |
| GCTGCTCTACTAATTCGTCA+GGG | + | chr3_3:69174877-69174896 | None:intergenic | 45.0% | |
| ACGAATTAGTAGAGCAGCCA+TGG | - | chr3_3:69174879-69174898 | Msa0467740:three_prime_UTR | 45.0% | |
| !! | CTCTTTGGAGTACTTCACCA+TGG | + | chr3_3:69174899-69174918 | None:intergenic | 45.0% |
| ! | AGTGAATTTACGGGCCCTTT+TGG | - | chr3_3:69175202-69175221 | Msa0467740:intron | 45.0% |
| ! | ATTTACGGGCCCTTTTGGAT+TGG | - | chr3_3:69175207-69175226 | Msa0467740:intron | 45.0% |
| !! | ACCCACTTGATTTGCCATGA+TGG | - | chr3_3:69175816-69175835 | Msa0467740:CDS | 45.0% |
| CACCATCATGGCAAATCAAG+TGG | + | chr3_3:69175821-69175840 | None:intergenic | 45.0% | |
| !! | TTGCCATGATGGTGTTGACT+TGG | - | chr3_3:69175827-69175846 | Msa0467740:CDS | 45.0% |
| !! | TGCCATGATGGTGTTGACTT+GGG | - | chr3_3:69175828-69175847 | Msa0467740:CDS | 45.0% |
| AACAAACCTGAGACCTTTGG+AGG | + | chr3_3:69175869-69175888 | None:intergenic | 45.0% | |
| GGAAACAAACCTGAGACCTT+TGG | + | chr3_3:69175872-69175891 | None:intergenic | 45.0% | |
| CCACCAAAATTGACACCAAG+GGG | + | chr3_3:69175893-69175912 | None:intergenic | 45.0% | |
| GTCCACCAAAATTGACACCA+AGG | + | chr3_3:69175895-69175914 | None:intergenic | 45.0% | |
| !!! | AGATGTTTTGGCCCACAAAC+AGG | - | chr3_3:69176074-69176093 | Msa0467740:intron | 45.0% |
| GAAAGGAATGGCCTGTTTGT+GGG | + | chr3_3:69176088-69176107 | None:intergenic | 45.0% | |
| TGAAAGGAATGGCCTGTTTG+TGG | + | chr3_3:69176089-69176108 | None:intergenic | 45.0% | |
| ! | AACAGACACTCTAATGGGCA+AGG | - | chr3_3:69176150-69176169 | Msa0467740:intron | 45.0% |
| CTAGGTGAAAGGTTTGGATG+TGG | - | chr3_3:69176361-69176380 | Msa0467740:intron | 45.0% | |
| TCTCTACGTGTCTCATATCC+AGG | - | chr3_3:69176388-69176407 | Msa0467740:intron | 45.0% | |
| AGTATCAGTTCGATGTGGCA+AGG | + | chr3_3:69176582-69176601 | None:intergenic | 45.0% | |
| AAGTCTCAAGCTGTTCGAAG+TGG | - | chr3_3:69176749-69176768 | Msa0467740:intron | 45.0% | |
| TGAACTCGATTGTGGGAAGG+AGG | + | chr3_3:69174852-69174871 | None:intergenic | 50.0% | |
| GGCTGCTCTACTAATTCGTC+AGG | + | chr3_3:69174878-69174897 | None:intergenic | 50.0% | |
| !! | GCCATGATGGTGTTGACTTG+GGG | - | chr3_3:69175829-69175848 | Msa0467740:CDS | 50.0% |
| ! | GTCTCAGGTTTGTTTCCCCT+TGG | - | chr3_3:69175875-69175894 | Msa0467740:intron | 50.0% |
| !!! | CCCCTTGGTGTCAATTTTGG+TGG | - | chr3_3:69175890-69175909 | Msa0467740:intron | 50.0% |
| CCACGACAGAAACGTCTGAA+AGG | + | chr3_3:69176105-69176124 | None:intergenic | 50.0% | |
| CCTTTCAGACGTTTCTGTCG+TGG | - | chr3_3:69176102-69176121 | Msa0467740:intron | 50.0% | |
| AGACGTTTCTGTCGTGGTGT+TGG | - | chr3_3:69176108-69176127 | Msa0467740:intron | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | - | chr3_3:69176109-69176128 | Msa0467740:intron | 50.0% | |
| GATTCTTCCATGAGCCCTGT+AGG | + | chr3_3:69176444-69176463 | None:intergenic | 50.0% | |
| GTGGCAAGGAGATGACATGT+AGG | + | chr3_3:69176568-69176587 | None:intergenic | 50.0% | |
| TTTGTTGCCAACTGGGTCTC+GGG | + | chr3_3:69176722-69176741 | None:intergenic | 50.0% | |
| ! | GTTTGTTGCCAACTGGGTCT+CGG | + | chr3_3:69176723-69176742 | None:intergenic | 50.0% |
| TGAACTCGATTGTGGGAAGG+AGG | + | chr3_3:69174852-69174871 | None:intergenic | 50.0% | |
| GGCTGCTCTACTAATTCGTC+AGG | + | chr3_3:69174878-69174897 | None:intergenic | 50.0% | |
| !! | GCCATGATGGTGTTGACTTG+GGG | - | chr3_3:69175829-69175848 | Msa0467740:CDS | 50.0% |
| ! | GTCTCAGGTTTGTTTCCCCT+TGG | - | chr3_3:69175875-69175894 | Msa0467740:intron | 50.0% |
| !!! | CCCCTTGGTGTCAATTTTGG+TGG | - | chr3_3:69175890-69175909 | Msa0467740:intron | 50.0% |
| CCACGACAGAAACGTCTGAA+AGG | + | chr3_3:69176105-69176124 | None:intergenic | 50.0% | |
| CCTTTCAGACGTTTCTGTCG+TGG | - | chr3_3:69176102-69176121 | Msa0467740:intron | 50.0% | |
| AGACGTTTCTGTCGTGGTGT+TGG | - | chr3_3:69176108-69176127 | Msa0467740:intron | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | - | chr3_3:69176109-69176128 | Msa0467740:intron | 50.0% | |
| GATTCTTCCATGAGCCCTGT+AGG | + | chr3_3:69176444-69176463 | None:intergenic | 50.0% | |
| GTGGCAAGGAGATGACATGT+AGG | + | chr3_3:69176568-69176587 | None:intergenic | 50.0% | |
| TTTGTTGCCAACTGGGTCTC+GGG | + | chr3_3:69176722-69176741 | None:intergenic | 50.0% | |
| ! | GTTTGTTGCCAACTGGGTCT+CGG | + | chr3_3:69176723-69176742 | None:intergenic | 50.0% |
| GGGTGAACTCGATTGTGGGA+AGG | + | chr3_3:69174855-69174874 | None:intergenic | 55.0% | |
| CAGGGGGTGAACTCGATTGT+GGG | + | chr3_3:69174859-69174878 | None:intergenic | 55.0% | |
| TCAGGGGGTGAACTCGATTG+TGG | + | chr3_3:69174860-69174879 | None:intergenic | 55.0% | |
| ATTGCAGCAACCAAGGCCAG+AGG | - | chr3_3:69175037-69175056 | Msa0467740:three_prime_UTR | 55.0% | |
| AACCCTAAGGTCAGCACCTC+TGG | + | chr3_3:69175056-69175075 | None:intergenic | 55.0% | |
| GCCCCAAGTCAACACCATCA+TGG | + | chr3_3:69175833-69175852 | None:intergenic | 55.0% | |
| !! | ATGGTGTTGACTTGGGGCCT+TGG | - | chr3_3:69175835-69175854 | Msa0467740:CDS | 55.0% |
| !! | CTTTGGAGGAGCACTCTCCA+AGG | + | chr3_3:69175855-69175874 | None:intergenic | 55.0% |
| !! | CTTGGAGAGTGCTCCTCCAA+AGG | - | chr3_3:69175853-69175872 | Msa0467740:intron | 55.0% |
| AGTGCTCCTCCAAAGGTCTC+AGG | - | chr3_3:69175860-69175879 | Msa0467740:intron | 55.0% | |
| ! | GATGGCAAACGCTGTTTCCC+TGG | + | chr3_3:69176016-69176035 | None:intergenic | 55.0% |
| GGGAAACAGCGTTTGCCATC+AGG | - | chr3_3:69176016-69176035 | Msa0467740:intron | 55.0% | |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | - | chr3_3:69176112-69176131 | Msa0467740:intron | 55.0% |
| ! | ACTCTAATGGGCAAGGACGC+TGG | - | chr3_3:69176157-69176176 | Msa0467740:intron | 55.0% |
| AGACGTACCTACAGGGCTCA+TGG | - | chr3_3:69176434-69176453 | Msa0467740:intron | 55.0% | |
| GGAAGAGGCTGTCCAGAAAG+AGG | - | chr3_3:69176611-69176630 | Msa0467740:intron | 55.0% | |
| GGGTGAACTCGATTGTGGGA+AGG | + | chr3_3:69174855-69174874 | None:intergenic | 55.0% | |
| CAGGGGGTGAACTCGATTGT+GGG | + | chr3_3:69174859-69174878 | None:intergenic | 55.0% | |
| TCAGGGGGTGAACTCGATTG+TGG | + | chr3_3:69174860-69174879 | None:intergenic | 55.0% | |
| ATTGCAGCAACCAAGGCCAG+AGG | - | chr3_3:69175037-69175056 | Msa0467740:three_prime_UTR | 55.0% | |
| AACCCTAAGGTCAGCACCTC+TGG | + | chr3_3:69175056-69175075 | None:intergenic | 55.0% | |
| GCCCCAAGTCAACACCATCA+TGG | + | chr3_3:69175833-69175852 | None:intergenic | 55.0% | |
| !! | ATGGTGTTGACTTGGGGCCT+TGG | - | chr3_3:69175835-69175854 | Msa0467740:CDS | 55.0% |
| !! | CTTTGGAGGAGCACTCTCCA+AGG | + | chr3_3:69175855-69175874 | None:intergenic | 55.0% |
| !! | CTTGGAGAGTGCTCCTCCAA+AGG | - | chr3_3:69175853-69175872 | Msa0467740:intron | 55.0% |
| AGTGCTCCTCCAAAGGTCTC+AGG | - | chr3_3:69175860-69175879 | Msa0467740:intron | 55.0% | |
| ! | GATGGCAAACGCTGTTTCCC+TGG | + | chr3_3:69176016-69176035 | None:intergenic | 55.0% |
| GGGAAACAGCGTTTGCCATC+AGG | - | chr3_3:69176016-69176035 | Msa0467740:intron | 55.0% | |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | - | chr3_3:69176112-69176131 | Msa0467740:intron | 55.0% |
| ! | ACTCTAATGGGCAAGGACGC+TGG | - | chr3_3:69176157-69176176 | Msa0467740:intron | 55.0% |
| AGACGTACCTACAGGGCTCA+TGG | - | chr3_3:69176434-69176453 | Msa0467740:intron | 55.0% | |
| GGAAGAGGCTGTCCAGAAAG+AGG | - | chr3_3:69176611-69176630 | Msa0467740:intron | 55.0% | |
| GGTGGGATTGTCGGGCTCTT+TGG | + | chr3_3:69174914-69174933 | None:intergenic | 60.0% | |
| AAGGTCAGCACCTCTGGCCT+TGG | + | chr3_3:69175050-69175069 | None:intergenic | 60.0% | |
| !! | AGGCCAGAGGTGCTGACCTT+AGG | - | chr3_3:69175050-69175069 | Msa0467740:three_prime_UTR | 60.0% |
| !! | GGCCAGAGGTGCTGACCTTA+GGG | - | chr3_3:69175051-69175070 | Msa0467740:three_prime_UTR | 60.0% |
| GGTCAGGGGCAACTTCCTGA+TGG | + | chr3_3:69176034-69176053 | None:intergenic | 60.0% | |
| TCTGTAGCCCGAGACCCAGT+TGG | - | chr3_3:69176712-69176731 | Msa0467740:intron | 60.0% | |
| GGTGGGATTGTCGGGCTCTT+TGG | + | chr3_3:69174914-69174933 | None:intergenic | 60.0% | |
| AAGGTCAGCACCTCTGGCCT+TGG | + | chr3_3:69175050-69175069 | None:intergenic | 60.0% | |
| !! | AGGCCAGAGGTGCTGACCTT+AGG | - | chr3_3:69175050-69175069 | Msa0467740:three_prime_UTR | 60.0% |
| !! | GGCCAGAGGTGCTGACCTTA+GGG | - | chr3_3:69175051-69175070 | Msa0467740:three_prime_UTR | 60.0% |
| GGTCAGGGGCAACTTCCTGA+TGG | + | chr3_3:69176034-69176053 | None:intergenic | 60.0% | |
| TCTGTAGCCCGAGACCCAGT+TGG | - | chr3_3:69176712-69176731 | Msa0467740:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 69174820 | 69177043 | 69174820 | ID=Msa0467740;Name=Msa0467740 |
| chr3_3 | mRNA | 69174820 | 69177043 | 69174820 | ID=Msa0467740-mRNA-1;Parent=Msa0467740;Name=Msa0467740-mRNA-1;_AED=0.09;_eAED=0.09;_QI=78|1|1|1|1|1|6|259|182 |
| chr3_3 | exon | 69174820 | 69175144 | 69174820 | ID=Msa0467740-mRNA-1:exon:16277;Parent=Msa0467740-mRNA-1 |
| chr3_3 | exon | 69175231 | 69175298 | 69175231 | ID=Msa0467740-mRNA-1:exon:16276;Parent=Msa0467740-mRNA-1 |
| chr3_3 | exon | 69175396 | 69175498 | 69175396 | ID=Msa0467740-mRNA-1:exon:16275;Parent=Msa0467740-mRNA-1 |
| chr3_3 | exon | 69175624 | 69175854 | 69175624 | ID=Msa0467740-mRNA-1:exon:16274;Parent=Msa0467740-mRNA-1 |
| chr3_3 | exon | 69176779 | 69176819 | 69176779 | ID=Msa0467740-mRNA-1:exon:16273;Parent=Msa0467740-mRNA-1 |
| chr3_3 | exon | 69176926 | 69177043 | 69176926 | ID=Msa0467740-mRNA-1:exon:16272;Parent=Msa0467740-mRNA-1 |
| chr3_3 | five_prime_UTR | 69176966 | 69177043 | 69176966 | ID=Msa0467740-mRNA-1:five_prime_utr;Parent=Msa0467740-mRNA-1 |
| chr3_3 | CDS | 69176926 | 69176965 | 69176926 | ID=Msa0467740-mRNA-1:cds;Parent=Msa0467740-mRNA-1 |
| chr3_3 | CDS | 69176779 | 69176819 | 69176779 | ID=Msa0467740-mRNA-1:cds;Parent=Msa0467740-mRNA-1 |
| chr3_3 | CDS | 69175624 | 69175854 | 69175624 | ID=Msa0467740-mRNA-1:cds;Parent=Msa0467740-mRNA-1 |
| chr3_3 | CDS | 69175396 | 69175498 | 69175396 | ID=Msa0467740-mRNA-1:cds;Parent=Msa0467740-mRNA-1 |
| chr3_3 | CDS | 69175231 | 69175298 | 69175231 | ID=Msa0467740-mRNA-1:cds;Parent=Msa0467740-mRNA-1 |
| chr3_3 | CDS | 69175079 | 69175144 | 69175079 | ID=Msa0467740-mRNA-1:cds;Parent=Msa0467740-mRNA-1 |
| chr3_3 | three_prime_UTR | 69174820 | 69175078 | 69174820 | ID=Msa0467740-mRNA-1:three_prime_utr;Parent=Msa0467740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
