Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388540 | XP_013450314.1 | 98.653 | 297 | 4 | 0 | 1 | 297 | 1 | 297 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388540 | sp|O65751|RSSA_CICAR | 89.189 | 296 | 31 | 1 | 2 | 297 | 6 | 300 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388540 | G8A187 | 98.653 | 297 | 4 | 0 | 1 | 297 | 1 | 297 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004790 | Msa0388540 | 0.806457 | 8.151348e-50 | -8.615850e-47 |
| Msa0029850 | Msa0388540 | -0.800780 | 1.227200e-48 | -8.615850e-47 |
| Msa0042510 | Msa0388540 | 0.809474 | 1.858438e-50 | -8.615850e-47 |
| Msa0042980 | Msa0388540 | 0.833616 | 4.815395e-56 | -8.615850e-47 |
| Msa0079560 | Msa0388540 | 0.815764 | 7.820919e-52 | -8.615850e-47 |
| Msa0094940 | Msa0388540 | 0.819429 | 1.166812e-52 | -8.615850e-47 |
| Msa0102120 | Msa0388540 | -0.806856 | 6.714104e-50 | -8.615850e-47 |
| Msa0103490 | Msa0388540 | 0.823932 | 1.061407e-53 | -8.615850e-47 |
| Msa0127230 | Msa0388540 | 0.825670 | 4.130746e-54 | -8.615850e-47 |
| Msa0169820 | Msa0388540 | -0.807360 | 5.251439e-50 | -8.615850e-47 |
| Msa0199800 | Msa0388540 | 0.800741 | 1.249924e-48 | -8.615850e-47 |
| Msa0226620 | Msa0388540 | 0.819405 | 1.181562e-52 | -8.615850e-47 |
| Msa0230640 | Msa0388540 | 0.815739 | 7.922689e-52 | -8.615850e-47 |
| Msa0373350 | Msa0388540 | 0.820553 | 6.456047e-53 | -8.615850e-47 |
| Msa0377610 | Msa0388540 | 0.873911 | 1.018717e-67 | -8.615850e-47 |
| Msa0381600 | Msa0388540 | 0.841836 | 3.731336e-58 | -8.615850e-47 |
| Msa0383490 | Msa0388540 | 0.836282 | 1.025325e-56 | -8.615850e-47 |
| Msa0388540 | Msa0421920 | 0.833077 | 6.561439e-56 | -8.615850e-47 |
| Msa0388540 | Msa0426820 | 0.866610 | 2.514740e-65 | -8.615850e-47 |
| Msa0388540 | Msa0427380 | 0.881722 | 1.895316e-70 | -8.615850e-47 |
| Msa0388540 | Msa0467740 | 0.900626 | 6.066544e-78 | -8.615850e-47 |
| Msa0388540 | Msa0477670 | 0.861748 | 8.248464e-64 | -8.615850e-47 |
| Msa0388540 | Msa0482190 | 0.828312 | 9.641447e-55 | -8.615850e-47 |
| Msa0388540 | Msa0485500 | 0.827907 | 1.207322e-54 | -8.615850e-47 |
| Msa0388540 | Msa0514130 | 0.896232 | 4.493912e-76 | -8.615850e-47 |
| Msa0388540 | Msa0526670 | 0.806949 | 6.415396e-50 | -8.615850e-47 |
| Msa0388540 | Msa0532810 | 0.835672 | 1.463881e-56 | -8.615850e-47 |
| Msa0388540 | Msa0578970 | -0.809123 | 2.210561e-50 | -8.615850e-47 |
| Msa0388540 | Msa0610890 | -0.806059 | 9.887062e-50 | -8.615850e-47 |
| Msa0388540 | Msa0621190 | 0.819676 | 1.024887e-52 | -8.615850e-47 |
| Msa0388540 | Msa0621750 | 0.821250 | 4.460896e-53 | -8.615850e-47 |
| Msa0388540 | Msa0651190 | -0.802468 | 5.530714e-49 | -8.615850e-47 |
| Msa0388540 | Msa0656450 | 0.800916 | 1.151175e-48 | -8.615850e-47 |
| Msa0388540 | Msa0700370 | 0.867862 | 1.001039e-65 | -8.615850e-47 |
| Msa0388540 | Msa0858190 | 0.808221 | 3.444861e-50 | -8.615850e-47 |
| Msa0388540 | Msa0876850 | 0.862243 | 5.816962e-64 | -8.615850e-47 |
| Msa0388540 | Msa0881210 | 0.807435 | 5.061198e-50 | -8.615850e-47 |
| Msa0388540 | Msa0930360 | 0.805432 | 1.339053e-49 | -8.615850e-47 |
| Msa0388540 | Msa0942080 | 0.874209 | 8.074047e-68 | -8.615850e-47 |
| Msa0388540 | Msa0987570 | 0.844164 | 8.958553e-59 | -8.615850e-47 |
| Msa0388540 | Msa0998890 | 0.854845 | 9.382429e-62 | -8.615850e-47 |
| Msa0388540 | Msa1041600 | 0.841568 | 4.391750e-58 | -8.615850e-47 |
| Msa0388540 | Msa1068200 | 0.800929 | 1.144376e-48 | -8.615850e-47 |
| Msa0388540 | Msa1075080 | 0.884168 | 2.414692e-71 | -8.615850e-47 |
| Msa0388540 | Msa1075220 | 0.807343 | 5.293579e-50 | -8.615850e-47 |
| Msa0388540 | Msa1144630 | 0.886512 | 3.207931e-72 | -8.615850e-47 |
| Msa0388540 | Msa1156340 | 0.801971 | 7.001011e-49 | -8.615850e-47 |
| Msa0388540 | Msa1165700 | 0.897102 | 1.945681e-76 | -8.615850e-47 |
| Msa0388540 | Msa1166500 | 0.836795 | 7.591487e-57 | -8.615850e-47 |
| Msa0388540 | Msa1225730 | 0.831978 | 1.228222e-55 | -8.615850e-47 |
| Msa0388540 | Msa1258380 | 0.829536 | 4.872121e-55 | -8.615850e-47 |
| Msa0388540 | Msa1265340 | 0.807367 | 5.232101e-50 | -8.615850e-47 |
| Msa0388540 | Msa1284800 | 0.828699 | 7.776295e-55 | -8.615850e-47 |
| Msa0388540 | Msa1309880 | -0.800823 | 1.202889e-48 | -8.615850e-47 |
| Msa0388540 | Msa1363930 | 0.883644 | 3.769048e-71 | -8.615850e-47 |
| Msa0388540 | Msa1364330 | 0.839753 | 1.312202e-57 | -8.615850e-47 |
| Msa0388540 | Msa1366540 | 0.843926 | 1.037705e-58 | -8.615850e-47 |
| Msa0388540 | Msa1387750 | 0.836544 | 8.794424e-57 | -8.615850e-47 |
| Msa0388540 | Msa1404240 | 0.842790 | 2.085761e-58 | -8.615850e-47 |
| Msa0388540 | Msa1416140 | 0.834011 | 3.834842e-56 | -8.615850e-47 |
| Msa0388540 | Msa1444250 | 0.825811 | 3.824420e-54 | -8.615850e-47 |
| Msa0388540 | Msa1451620 | 0.836590 | 8.557330e-57 | -8.615850e-47 |
| Msa0388540 | Msa1454860 | -0.813385 | 2.629143e-51 | -8.615850e-47 |
| Msa0388540 | Msa1457670 | 0.806648 | 7.427335e-50 | -8.615850e-47 |
| Msa0388540 | Msa1461810 | 0.842154 | 3.075827e-58 | -8.615850e-47 |
| Msa0388540 | Msa1463510 | 0.821980 | 3.026100e-53 | -8.615850e-47 |
| Msa0388540 | Msa1465890 | 0.833973 | 3.919280e-56 | -8.615850e-47 |
| Msa0260270 | Msa0388540 | 0.834695 | 2.583584e-56 | -8.615850e-47 |
| Msa0356880 | Msa0388540 | -0.800685 | 1.283652e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388540 | MtrunA17_Chr7g0268451 | 98.653 | 297 | 4 | 0 | 1 | 297 | 1 | 297 | 0.0 | 605 |
| Msa0388540 | MtrunA17_Chr3g0129861 | 92.203 | 295 | 21 | 2 | 3 | 297 | 7 | 299 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388540 | AT3G04770.2 | 75.627 | 279 | 49 | 6 | 3 | 271 | 9 | 278 | 3.75e-148 | 417 |
| Msa0388540 | AT1G72370.2 | 79.283 | 251 | 39 | 3 | 2 | 240 | 7 | 256 | 1.35e-145 | 411 |
| Msa0388540 | AT1G72370.1 | 79.283 | 251 | 39 | 3 | 2 | 240 | 7 | 256 | 1.93e-145 | 410 |
| Msa0388540 | AT3G04770.1 | 88.384 | 198 | 23 | 0 | 2 | 199 | 8 | 205 | 2.52e-131 | 376 |
Find 125 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAGTGAGGTTGAGATTA+GGG | 0.200518 | 3_1:+93003063 | None:intergenic |
| GTTTACGACTTGGAATATTT+TGG | 0.206489 | 3_1:-93000638 | Msa0388540:three_prime_UTR |
| ACTAATCCAGATGTTACTTT+TGG | 0.236780 | 3_1:+93000714 | None:intergenic |
| AGGGATTTATATTATAAATC+TGG | 0.244718 | 3_1:-93002803 | Msa0388540:CDS |
| CTCAAATTTGCTCAGTATAC+TGG | 0.267475 | 3_1:-93002673 | Msa0388540:CDS |
| ATCGATCAAGTACCAGCTTC+TGG | 0.282672 | 3_1:+93001175 | None:intergenic |
| CCAAGAGCAGCTTCCTTGAT+TGG | 0.286416 | 3_1:+93001713 | None:intergenic |
| GTTCAATCTGCTAGACCTTA+TGG | 0.290724 | 3_1:-93002709 | Msa0388540:CDS |
| TGCTTGCCCTTGTTGTTGGC+AGG | 0.316997 | 3_1:+93001626 | None:intergenic |
| CAGCAGTTCCTGCTGTCAAC+TGG | 0.338422 | 3_1:-93001204 | Msa0388540:CDS |
| TGAGTATGAAGAAATGAAAC+TGG | 0.352792 | 3_1:+93003134 | None:intergenic |
| TCTTGCTCCTTTGCCTCCTC+AGG | 0.364214 | 3_1:+93001352 | None:intergenic |
| ACTGTGCTTGCCCTTGTTGT+TGG | 0.371019 | 3_1:+93001622 | None:intergenic |
| ACAGTATAGGATGTCTGTTT+TGG | 0.375538 | 3_1:-93001604 | Msa0388540:CDS |
| GAACTGCATCATTCCATGTT+TGG | 0.376849 | 3_1:+93001239 | None:intergenic |
| AGCAGAGTGAGGTTGAGATT+AGG | 0.378530 | 3_1:+93003062 | None:intergenic |
| CAGGAGCAGGTATTTGTTGT+GGG | 0.383724 | 3_1:+93000827 | None:intergenic |
| GAAACCTGATGATCAGTTCT+TGG | 0.383788 | 3_1:+93002556 | None:intergenic |
| GTTGAGATTAGGGTTATGTA+TGG | 0.392297 | 3_1:+93003073 | None:intergenic |
| ATGGAGCAACTTCAACAGTT+AGG | 0.396196 | 3_1:+93003092 | None:intergenic |
| CCTTTCCCAAAAGTAACATC+TGG | 0.398118 | 3_1:-93000720 | Msa0388540:three_prime_UTR |
| GGGATTTATATTATAAATCT+GGG | 0.401340 | 3_1:-93002802 | Msa0388540:CDS |
| TTCCCAGCCAGTTGCTTGGA+TGG | 0.405766 | 3_1:+93000795 | None:intergenic |
| CATCGGCGGCAAGCATCATC+TGG | 0.408335 | 3_1:+93002986 | None:intergenic |
| AGCAGGCCATTGTCCATCAT+TGG | 0.409891 | 3_1:+93001270 | None:intergenic |
| ATCAGTGAGGATAAGAAGCC+TGG | 0.410991 | 3_1:+93002579 | None:intergenic |
| GCAGGCCATTGTCCATCATT+GGG | 0.413746 | 3_1:+93001271 | None:intergenic |
| ACTGGTGCCAATGCTATTGC+TGG | 0.415426 | 3_1:-93002655 | Msa0388540:CDS |
| CCAATCAAGGAAGCTGCTCT+TGG | 0.415479 | 3_1:-93001713 | Msa0388540:CDS |
| TTACCATGACATCCCACTTA+AGG | 0.419417 | 3_1:+93001534 | None:intergenic |
| GCAGGTATTTGTTGTGGGGC+TGG | 0.425106 | 3_1:+93000832 | None:intergenic |
| TCGATCAAGTACCAGCTTCT+GGG | 0.429103 | 3_1:+93001176 | None:intergenic |
| ACAGCAGGAACTGCTGGAAT+AGG | 0.430588 | 3_1:+93001211 | None:intergenic |
| CTTATTCCCAGCCAGTTGCT+TGG | 0.433981 | 3_1:+93000791 | None:intergenic |
| CAGGTTCTCTATAAAAGAAC+AGG | 0.436315 | 3_1:+93001371 | None:intergenic |
| CAGAAGTATTGTTTACGACT+TGG | 0.447835 | 3_1:-93000648 | Msa0388540:three_prime_UTR |
| GAATGAAACTTGCATCTGAT+TGG | 0.451068 | 3_1:+93002609 | None:intergenic |
| AGTCCATCCAAGCAACTGGC+TGG | 0.454371 | 3_1:-93000798 | Msa0388540:CDS |
| GAAATGAAACTGGGTGGGTA+GGG | 0.457290 | 3_1:+93003144 | None:intergenic |
| GGCAAGCATCATCTGGATAT+CGG | 0.457963 | 3_1:+93002993 | None:intergenic |
| CAGTTGACAGCAGGAACTGC+TGG | 0.458194 | 3_1:+93001205 | None:intergenic |
| CTATACATTATTTGAGATGT+GGG | 0.467804 | 3_1:-93000492 | Msa0388540:three_prime_UTR |
| TGATCCAAGAACTGATCATC+AGG | 0.468742 | 3_1:-93002560 | Msa0388540:intron |
| AAGTCAGTAATAGCATAATC+TGG | 0.469421 | 3_1:+93001310 | None:intergenic |
| CCATTCGCCCTGGCCTTAAG+TGG | 0.476474 | 3_1:-93001547 | Msa0388540:CDS |
| GCTATTACTGACTTTAATGC+AGG | 0.477186 | 3_1:-93001301 | Msa0388540:CDS |
| GTTGAGTCCATCCAAGCAAC+TGG | 0.477635 | 3_1:-93000802 | Msa0388540:CDS |
| GTATCACAGAAAGCAATTGT+TGG | 0.479071 | 3_1:+93001683 | None:intergenic |
| GGAAGGTAAATATAAATTGA+AGG | 0.482706 | 3_1:+93000742 | None:intergenic |
| AACTGGGCAGCCCCAGAAGC+TGG | 0.486191 | 3_1:-93001187 | Msa0388540:intron |
| ATTGAACAATCATATCTTGT+GGG | 0.493138 | 3_1:+93002725 | None:intergenic |
| GCTTGGATGGACTCAACTCC+AGG | 0.495466 | 3_1:+93000808 | None:intergenic |
| GGAACTGCTGGAATAGGCTC+TGG | 0.497641 | 3_1:+93001217 | None:intergenic |
| TGGAGCAACTTCAACAGTTA+GGG | 0.498418 | 3_1:+93003093 | None:intergenic |
| GGGGCTGCCCAGTTGACAGC+AGG | 0.498864 | 3_1:+93001196 | None:intergenic |
| CCAGGAGCAGGTATTTGTTG+TGG | 0.503860 | 3_1:+93000826 | None:intergenic |
| TCTATACATTATTTGAGATG+TGG | 0.504242 | 3_1:-93000493 | Msa0388540:three_prime_UTR |
| AGCAGTTCCTGCTGTCAACT+GGG | 0.509125 | 3_1:-93001203 | Msa0388540:CDS |
| CATGTTTGGTCGATAGCAGC+AGG | 0.511174 | 3_1:+93001253 | None:intergenic |
| CCACAACAAATACCTGCTCC+TGG | 0.512625 | 3_1:-93000826 | Msa0388540:CDS |
| TGTTTGTGTGCAGCCAATCA+AGG | 0.514122 | 3_1:-93001726 | Msa0388540:intron |
| ATGACATCCCACTTAAGGCC+AGG | 0.514173 | 3_1:+93001539 | None:intergenic |
| AGAACAGCTCTCTGTCCATA+AGG | 0.514765 | 3_1:+93002694 | None:intergenic |
| GCTTGCCCTTGTTGTTGGCA+GGG | 0.514834 | 3_1:+93001627 | None:intergenic |
| TAAACTAAGCAAATCATAGA+TGG | 0.515447 | 3_1:+93000456 | None:intergenic |
| AGAAATGAAACTGGGTGGGT+AGG | 0.516622 | 3_1:+93003143 | None:intergenic |
| AGATTTGTCTTGCAGCTGCA+GGG | 0.519344 | 3_1:-93000876 | Msa0388540:intron |
| TGTTTATTCATCAGTACATG+TGG | 0.521712 | 3_1:-93000400 | Msa0388540:three_prime_UTR |
| GCAGGTTCTATCCCCAATGA+TGG | 0.524423 | 3_1:-93001283 | Msa0388540:CDS |
| CCACTTAAGGCCAGGGCGAA+TGG | 0.524759 | 3_1:+93001547 | None:intergenic |
| ATCTTCAAGCGCCGTAACGA+TGG | 0.529765 | 3_1:-93002919 | Msa0388540:intron |
| ACGAGGGGCAGCCATGGTGG+CGG | 0.540773 | 3_1:+93003035 | None:intergenic |
| TAGAGAACCTGAGGAGGCAA+AGG | 0.541067 | 3_1:-93001359 | Msa0388540:CDS |
| ATGGAATGTTACCATCGTTA+CGG | 0.545997 | 3_1:+93002908 | None:intergenic |
| GTAATAGCATAATCTGGTGC+AGG | 0.546158 | 3_1:+93001316 | None:intergenic |
| AACAAGGGCAAGCACAGTAT+AGG | 0.547955 | 3_1:-93001617 | Msa0388540:CDS |
| TGGCCTTAAGTGGGATGTCA+TGG | 0.555571 | 3_1:-93001537 | Msa0388540:intron |
| GATTTGTCTTGCAGCTGCAG+GGG | 0.556515 | 3_1:-93000875 | Msa0388540:intron |
| CTGCTGCTATCGACCAAACA+TGG | 0.557904 | 3_1:-93001252 | Msa0388540:CDS |
| GATTGAACAATCATATCTTG+TGG | 0.558514 | 3_1:+93002724 | None:intergenic |
| ACGTAGACCAAGAACCAGGA+GGG | 0.559386 | 3_1:+93000546 | None:intergenic |
| TTTAGTACCGAGATGGACAT+CGG | 0.561895 | 3_1:+93002969 | None:intergenic |
| GAAGGTAAATATAAATTGAA+GGG | 0.564937 | 3_1:+93000743 | None:intergenic |
| CGATCAAGTACCAGCTTCTG+GGG | 0.566204 | 3_1:+93001177 | None:intergenic |
| TATAATTTCAGAATGTGTTG+AGG | 0.567493 | 3_1:-93000577 | Msa0388540:three_prime_UTR |
| ATGGACTCAACTCCAGGAGC+AGG | 0.568466 | 3_1:+93000814 | None:intergenic |
| ATCTGATTGGTAAAAGTACC+AGG | 0.569249 | 3_1:+93002622 | None:intergenic |
| ATTGCTGGAAGGCACACGCC+TGG | 0.569818 | 3_1:-93002640 | Msa0388540:CDS |
| CCTATGCGATATGTCGACAT+TGG | 0.570541 | 3_1:-93001653 | Msa0388540:CDS |
| AAGTTGACGAGGGGCAGCCA+TGG | 0.573667 | 3_1:+93003029 | None:intergenic |
| CTCTGCTACTTCCGCCACCA+TGG | 0.575966 | 3_1:-93003046 | Msa0388540:exon |
| ATGCGTGGAACCATTCGCCC+TGG | 0.577456 | 3_1:-93001557 | Msa0388540:CDS |
| AAGTTTCATTCAGTGAGCCC+AGG | 0.582162 | 3_1:-93002597 | Msa0388540:CDS |
| AGGAGCAGGTATTTGTTGTG+GGG | 0.582996 | 3_1:+93000828 | None:intergenic |
| GTTTATTCATCAGTACATGT+GGG | 0.583446 | 3_1:-93000399 | Msa0388540:three_prime_UTR |
| GTGCCTTCCAGCAATAGCAT+TGG | 0.585941 | 3_1:+93002648 | None:intergenic |
| TGAGGAGGCAAAGGAGCAAG+AGG | 0.586597 | 3_1:-93001350 | Msa0388540:CDS |
| GTCCATCCAAGCAACTGGCT+GGG | 0.586705 | 3_1:-93000797 | Msa0388540:CDS |
| TGGAATCCCTGCCAACAACA+AGG | 0.586772 | 3_1:-93001633 | Msa0388540:CDS |
| CTTTCTGAGAAAGTTGACGA+GGG | 0.588586 | 3_1:+93003019 | None:intergenic |
| CTTGCCGCCGATGTCCATCT+CGG | 0.588724 | 3_1:-93002976 | Msa0388540:CDS |
| ACAAACGTAGACCAAGAACC+AGG | 0.593302 | 3_1:+93000542 | None:intergenic |
| TTGACGAGGGGCAGCCATGG+TGG | 0.594823 | 3_1:+93003032 | None:intergenic |
| ATGAAGAAATGAAACTGGGT+GGG | 0.611379 | 3_1:+93003139 | None:intergenic |
| TCAGTGAGGATAAGAAGCCT+GGG | 0.611983 | 3_1:+93002580 | None:intergenic |
| CGTAGACCAAGAACCAGGAG+GGG | 0.612009 | 3_1:+93000547 | None:intergenic |
| TGACATCCCACTTAAGGCCA+GGG | 0.615254 | 3_1:+93001540 | None:intergenic |
| CATTCGCCCTGGCCTTAAGT+GGG | 0.617158 | 3_1:-93001546 | Msa0388540:CDS |
| GGAATCCCTGCCAACAACAA+GGG | 0.619315 | 3_1:-93001632 | Msa0388540:CDS |
| AGGATGGTGTTGCAGATGCG+TGG | 0.623853 | 3_1:-93001572 | Msa0388540:CDS |
| TCTTTCTGAGAAAGTTGACG+AGG | 0.624055 | 3_1:+93003018 | None:intergenic |
| ATTTGTCTTGCAGCTGCAGG+GGG | 0.624967 | 3_1:-93000874 | Msa0388540:intron |
| GTGCCAATGCTATTGCTGGA+AGG | 0.638251 | 3_1:-93002651 | Msa0388540:CDS |
| GTAGACCAAGAACCAGGAGG+GGG | 0.648699 | 3_1:+93000548 | None:intergenic |
| CTATCCCCAATGATGGACAA+TGG | 0.660054 | 3_1:-93001276 | Msa0388540:CDS |
| CAGGCCATTGTCCATCATTG+GGG | 0.668561 | 3_1:+93001272 | None:intergenic |
| CCAATGTCGACATATCGCAT+AGG | 0.669426 | 3_1:+93001653 | None:intergenic |
| ACTGGCTGGGAATAAGCTAG+TGG | 0.675865 | 3_1:-93000784 | Msa0388540:exon |
| GAGTATGAAGAAATGAAACT+GGG | 0.682333 | 3_1:+93003135 | None:intergenic |
| TTTCTGAGAAAGTTGACGAG+GGG | 0.682900 | 3_1:+93003020 | None:intergenic |
| GTGGCGGAAGTAGCAGAGTG+AGG | 0.695124 | 3_1:+93003051 | None:intergenic |
| AACGTAGACCAAGAACCAGG+AGG | 0.701621 | 3_1:+93000545 | None:intergenic |
| TATGAAGAAATGAAACTGGG+TGG | 0.709043 | 3_1:+93003138 | None:intergenic |
| GATCAGTTCTTGGATCAGTG+AGG | 0.719669 | 3_1:+93002566 | None:intergenic |
| AGTACCGAGATGGACATCGG+CGG | 0.738432 | 3_1:+93002972 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTATTTTATATTCTATTA+TGG | + | chr3_1:93001284-93001303 | None:intergenic | 10.0% |
| !! | ATATTGTATTATAAGAAATT+TGG | - | chr3_1:93001788-93001807 | Msa0388540:intron | 10.0% |
| !!! | ATTAATTTTTGACTACATTT+TGG | + | chr3_1:93000702-93000721 | None:intergenic | 15.0% |
| !! | TGCATTTGTTTATTTATTTA+GGG | - | chr3_1:93000734-93000753 | Msa0388540:three_prime_UTR | 15.0% |
| !!! | AAGTTTTTTTATTTTAGCTT+TGG | - | chr3_1:93001161-93001180 | Msa0388540:intron | 15.0% |
| !! | TAATATGTTTATCCAAAATT+GGG | + | chr3_1:93001187-93001206 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTTATGTTATTGT+GGG | - | chr3_1:93001332-93001351 | Msa0388540:CDS | 15.0% |
| !! | ATATTATTAAAACAGCTTAT+AGG | + | chr3_1:93001618-93001637 | None:intergenic | 15.0% |
| !!! | TGTTTTAATAATATATTGTG+TGG | - | chr3_1:93001624-93001643 | Msa0388540:CDS | 15.0% |
| !!! | ACTATTTTTTCTTTTTGTAA+CGG | - | chr3_1:93002045-93002064 | Msa0388540:intron | 15.0% |
| !! | GTGCATTTGTTTATTTATTT+AGG | - | chr3_1:93000733-93000752 | Msa0388540:three_prime_UTR | 20.0% |
| !! | AGGGATTTATATTATAAATC+TGG | - | chr3_1:93000753-93000772 | Msa0388540:three_prime_UTR | 20.0% |
| !! | GGGATTTATATTATAAATCT+GGG | - | chr3_1:93000754-93000773 | Msa0388540:three_prime_UTR | 20.0% |
| !! | CTAATATGTTTATCCAAAAT+TGG | + | chr3_1:93001188-93001207 | None:intergenic | 20.0% |
| !! | CATGTATATATATGAATATG+CGG | + | chr3_1:93001235-93001254 | None:intergenic | 20.0% |
| !!! | GTTGTTTTTTTATGTTATTG+TGG | - | chr3_1:93001331-93001350 | Msa0388540:CDS | 20.0% |
| !!! | TGTTTTTTTATGTTATTGTG+GGG | - | chr3_1:93001333-93001352 | Msa0388540:CDS | 20.0% |
| !! | TTAAGATGTTTATCCAAAAA+GGG | + | chr3_1:93001511-93001530 | None:intergenic | 20.0% |
| !! | ATTAAGATGTTTATCCAAAA+AGG | + | chr3_1:93001512-93001531 | None:intergenic | 20.0% |
| !! | GTAATAATAAGTGCTTATAT+AGG | + | chr3_1:93001566-93001585 | None:intergenic | 20.0% |
| !! | AAGTTAACGAAATAAATGTT+GGG | + | chr3_1:93002563-93002582 | None:intergenic | 20.0% |
| !! | GAAGGTAAATATAAATTGAA+GGG | + | chr3_1:93002816-93002835 | None:intergenic | 20.0% |
| !! | ATAATTTAGGGTTTGGAAAA+TGG | + | chr3_1:93000670-93000689 | None:intergenic | 25.0% |
| !! | AAATTGGATAATTTAGGGTT+TGG | + | chr3_1:93000677-93000696 | None:intergenic | 25.0% |
| ! | TGGTGAAATTGGATAATTTA+GGG | + | chr3_1:93000682-93000701 | None:intergenic | 25.0% |
| ! | TTGGTGAAATTGGATAATTT+AGG | + | chr3_1:93000683-93000702 | None:intergenic | 25.0% |
| ! | TTATAAATCTGGGAAAAACA+TGG | - | chr3_1:93000764-93000783 | Msa0388540:three_prime_UTR | 25.0% |
| ! | TATAAATCTGGGAAAAACAT+GGG | - | chr3_1:93000765-93000784 | Msa0388540:three_prime_UTR | 25.0% |
| ! | ATTGAACAATCATATCTTGT+GGG | + | chr3_1:93000834-93000853 | None:intergenic | 25.0% |
| !!! | TGATTCATTGTTTTATGTGT+AGG | - | chr3_1:93001054-93001073 | Msa0388540:intron | 25.0% |
| !!! | GATTCATTGTTTTATGTGTA+GGG | - | chr3_1:93001055-93001074 | Msa0388540:intron | 25.0% |
| ! | AGTTAACGAAATAAATGTTG+GGG | + | chr3_1:93002562-93002581 | None:intergenic | 25.0% |
| ! | CAAGTTAACGAAATAAATGT+TGG | + | chr3_1:93002564-93002583 | None:intergenic | 25.0% |
| !! | TTCTCTATTTAAGATTTGTC+AGG | - | chr3_1:93002588-93002607 | Msa0388540:CDS | 25.0% |
| !! | TCTCTATTTAAGATTTGTCA+GGG | - | chr3_1:93002589-93002608 | Msa0388540:CDS | 25.0% |
| ! | GGAAGGTAAATATAAATTGA+AGG | + | chr3_1:93002817-93002836 | None:intergenic | 25.0% |
| ! | TATAATTTCAGAATGTGTTG+AGG | - | chr3_1:93002979-93002998 | Msa0388540:CDS | 25.0% |
| !! | TCTATACATTATTTGAGATG+TGG | - | chr3_1:93003063-93003082 | Msa0388540:five_prime_UTR | 25.0% |
| !! | CTATACATTATTTGAGATGT+GGG | - | chr3_1:93003064-93003083 | Msa0388540:five_prime_UTR | 25.0% |
| ! | TAAACTAAGCAAATCATAGA+TGG | + | chr3_1:93003103-93003122 | None:intergenic | 25.0% |
| GAGTATGAAGAAATGAAACT+GGG | + | chr3_1:93000424-93000443 | None:intergenic | 30.0% | |
| TGAGTATGAAGAAATGAAAC+TGG | + | chr3_1:93000425-93000444 | None:intergenic | 30.0% | |
| !! | TGACTACATTTTGGTGAAAT+TGG | + | chr3_1:93000693-93000712 | None:intergenic | 30.0% |
| GATTGAACAATCATATCTTG+TGG | + | chr3_1:93000835-93000854 | None:intergenic | 30.0% | |
| AACTTTGCACAAAAACCAAT+GGG | + | chr3_1:93001471-93001490 | None:intergenic | 30.0% | |
| AAACTTTGCACAAAAACCAA+TGG | + | chr3_1:93001472-93001491 | None:intergenic | 30.0% | |
| !!! | ATTTTAGCTTGAACCCTTTT+TGG | - | chr3_1:93001495-93001514 | Msa0388540:intron | 30.0% |
| AAGTGCTTATATAGGATATG+AGG | + | chr3_1:93001558-93001577 | None:intergenic | 30.0% | |
| AATATATTGTGTGGAGCTTA+TGG | - | chr3_1:93001633-93001652 | Msa0388540:CDS | 30.0% | |
| TTTGATCAAGTCTATTGTCT+TGG | - | chr3_1:93002141-93002160 | Msa0388540:intron | 30.0% | |
| TTGATCAAGTCTATTGTCTT+GGG | - | chr3_1:93002142-93002161 | Msa0388540:intron | 30.0% | |
| AAGTCAGTAATAGCATAATC+TGG | + | chr3_1:93002249-93002268 | None:intergenic | 30.0% | |
| CAAGGTAAATCAATGTTGAA+GGG | + | chr3_1:93002453-93002472 | None:intergenic | 30.0% | |
| TCAAGGTAAATCAATGTTGA+AGG | + | chr3_1:93002454-93002473 | None:intergenic | 30.0% | |
| ! | CTCTATTTAAGATTTGTCAG+GGG | - | chr3_1:93002590-93002609 | Msa0388540:CDS | 30.0% |
| !!! | CTAATCCAGATGTTACTTTT+GGG | + | chr3_1:93002844-93002863 | None:intergenic | 30.0% |
| !!! | ACTAATCCAGATGTTACTTT+TGG | + | chr3_1:93002845-93002864 | None:intergenic | 30.0% |
| !!! | AACATCTGGATTAGTCTTTT+TGG | - | chr3_1:93002850-93002869 | Msa0388540:intron | 30.0% |
| !! | GTTTACGACTTGGAATATTT+TGG | - | chr3_1:93002918-93002937 | Msa0388540:intron | 30.0% |
| TGTTTATTCATCAGTACATG+TGG | - | chr3_1:93003156-93003175 | Msa0388540:five_prime_UTR | 30.0% | |
| GTTTATTCATCAGTACATGT+GGG | - | chr3_1:93003157-93003176 | Msa0388540:five_prime_UTR | 30.0% | |
| ATGAAGAAATGAAACTGGGT+GGG | + | chr3_1:93000420-93000439 | None:intergenic | 35.0% | |
| TATGAAGAAATGAAACTGGG+TGG | + | chr3_1:93000421-93000440 | None:intergenic | 35.0% | |
| GTTGAGATTAGGGTTATGTA+TGG | + | chr3_1:93000486-93000505 | None:intergenic | 35.0% | |
| TAAAAACTGCGACTTTCAGA+TGG | - | chr3_1:93000606-93000625 | Msa0388540:three_prime_UTR | 35.0% | |
| ATGGAATGTTACCATCGTTA+CGG | + | chr3_1:93000651-93000670 | None:intergenic | 35.0% | |
| ! | CTCAAATTTGCTCAGTATAC+TGG | - | chr3_1:93000883-93000902 | Msa0388540:intron | 35.0% |
| !! | ATCTGATTGGTAAAAGTACC+AGG | + | chr3_1:93000937-93000956 | None:intergenic | 35.0% |
| GAATGAAACTTGCATCTGAT+TGG | + | chr3_1:93000950-93000969 | None:intergenic | 35.0% | |
| !!! | TTTTAGCTTTGGCCCAATTT+TGG | - | chr3_1:93001172-93001191 | Msa0388540:intron | 35.0% |
| AAGCACTTGTAAGTCTGTTT+GGG | + | chr3_1:93001409-93001428 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAGTCTGTT+TGG | + | chr3_1:93001410-93001429 | None:intergenic | 35.0% | |
| ACTTTGCACAAAAACCAATG+GGG | + | chr3_1:93001470-93001489 | None:intergenic | 35.0% | |
| AAGCACTTGTAAACCAACTT+GGG | + | chr3_1:93001700-93001719 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAACCAACT+TGG | + | chr3_1:93001701-93001720 | None:intergenic | 35.0% | |
| GACAATCTGGTTATTAGGTT+TGG | + | chr3_1:93001748-93001767 | None:intergenic | 35.0% | |
| AAGCAGACAATCTGGTTATT+AGG | + | chr3_1:93001753-93001772 | None:intergenic | 35.0% | |
| GTATCACAGAAAGCAATTGT+TGG | + | chr3_1:93001876-93001895 | None:intergenic | 35.0% | |
| ! | ACAGTATAGGATGTCTGTTT+TGG | - | chr3_1:93001952-93001971 | Msa0388540:intron | 35.0% |
| ! | CAATGTGAAGTATCCATATG+TGG | - | chr3_1:93002087-93002106 | Msa0388540:intron | 35.0% |
| CAGGTTCTCTATAAAAGAAC+AGG | + | chr3_1:93002188-93002207 | None:intergenic | 35.0% | |
| ! | GTTCTTTTATAGAGAACCTG+AGG | - | chr3_1:93002188-93002207 | Msa0388540:intron | 35.0% |
| !! | GCTATTACTGACTTTAATGC+AGG | - | chr3_1:93002255-93002274 | Msa0388540:intron | 35.0% |
| ATCAAAGCTGAGAGATATCA+AGG | + | chr3_1:93002471-93002490 | None:intergenic | 35.0% | |
| ATTTCCTCTAATCCTGTCAT+TGG | - | chr3_1:93002508-93002527 | Msa0388540:intron | 35.0% | |
| AATTAGCAAATGCCAATGAC+AGG | + | chr3_1:93002523-93002542 | None:intergenic | 35.0% | |
| !!! | CAGATGTTACTTTTGGGAAA+GGG | + | chr3_1:93002838-93002857 | None:intergenic | 35.0% |
| !! | CAGAAGTATTGTTTACGACT+TGG | - | chr3_1:93002908-93002927 | Msa0388540:intron | 35.0% |
| !!! | GGGTAGGGTTTTTAAGTTCT+TGG | + | chr3_1:93000400-93000419 | None:intergenic | 40.0% |
| TGGAGCAACTTCAACAGTTA+GGG | + | chr3_1:93000466-93000485 | None:intergenic | 40.0% | |
| ATGGAGCAACTTCAACAGTT+AGG | + | chr3_1:93000467-93000486 | None:intergenic | 40.0% | |
| ! | TTTCTGAGAAAGTTGACGAG+GGG | + | chr3_1:93000539-93000558 | None:intergenic | 40.0% |
| ! | CTTTCTGAGAAAGTTGACGA+GGG | + | chr3_1:93000540-93000559 | None:intergenic | 40.0% |
| ! | TCTTTCTGAGAAAGTTGACG+AGG | + | chr3_1:93000541-93000560 | None:intergenic | 40.0% |
| ! | TTTAGTACCGAGATGGACAT+CGG | + | chr3_1:93000590-93000609 | None:intergenic | 40.0% |
| GTTCAATCTGCTAGACCTTA+TGG | - | chr3_1:93000847-93000866 | Msa0388540:CDS | 40.0% | |
| TGATCCAAGAACTGATCATC+AGG | - | chr3_1:93000996-93001015 | Msa0388540:intron | 40.0% | |
| GAAACCTGATGATCAGTTCT+TGG | + | chr3_1:93001003-93001022 | None:intergenic | 40.0% | |
| ATGTTATTGTGGGGAGCTTA+TGG | - | chr3_1:93001342-93001361 | Msa0388540:CDS | 40.0% | |
| ACAGACAAAAGCAGACAATC+TGG | + | chr3_1:93001761-93001780 | None:intergenic | 40.0% | |
| !!! | AGGATGTCTGTTTTGGCTTT+TGG | - | chr3_1:93001959-93001978 | Msa0388540:intron | 40.0% |
| TTACCATGACATCCCACTTA+AGG | + | chr3_1:93002025-93002044 | None:intergenic | 40.0% | |
| ! | TCTTGGGTTTTCTTTGATGC+AGG | - | chr3_1:93002158-93002177 | Msa0388540:intron | 40.0% |
| ! | CTTTTATAGAGAACCTGAGG+AGG | - | chr3_1:93002191-93002210 | Msa0388540:intron | 40.0% |
| GTAATAGCATAATCTGGTGC+AGG | + | chr3_1:93002243-93002262 | None:intergenic | 40.0% | |
| GAACTGCATCATTCCATGTT+TGG | + | chr3_1:93002320-93002339 | None:intergenic | 40.0% | |
| AGAGGAAATTTGAGAGATCG+AGG | + | chr3_1:93002497-93002516 | None:intergenic | 40.0% | |
| AATGCCAATGACAGGATTAG+AGG | + | chr3_1:93002515-93002534 | None:intergenic | 40.0% | |
| !!! | TGTTACTTTTGGGAAAGGGA+AGG | + | chr3_1:93002834-93002853 | None:intergenic | 40.0% |
| !!! | CCAGATGTTACTTTTGGGAA+AGG | + | chr3_1:93002839-93002858 | None:intergenic | 40.0% |
| CCTTTCCCAAAAGTAACATC+TGG | - | chr3_1:93002836-93002855 | Msa0388540:intron | 40.0% | |
| GAAATGAAACTGGGTGGGTA+GGG | + | chr3_1:93000415-93000434 | None:intergenic | 45.0% | |
| AGAAATGAAACTGGGTGGGT+AGG | + | chr3_1:93000416-93000435 | None:intergenic | 45.0% | |
| GCAGAGTGAGGTTGAGATTA+GGG | + | chr3_1:93000496-93000515 | None:intergenic | 45.0% | |
| AGCAGAGTGAGGTTGAGATT+AGG | + | chr3_1:93000497-93000516 | None:intergenic | 45.0% | |
| GGCAAGCATCATCTGGATAT+CGG | + | chr3_1:93000566-93000585 | None:intergenic | 45.0% | |
| !!! | CGCAGTTTTTAGTACCGAGA+TGG | + | chr3_1:93000597-93000616 | None:intergenic | 45.0% |
| AGAACAGCTCTCTGTCCATA+AGG | + | chr3_1:93000865-93000884 | None:intergenic | 45.0% | |
| AAGTTTCATTCAGTGAGCCC+AGG | - | chr3_1:93000959-93000978 | Msa0388540:intron | 45.0% | |
| TCAGTGAGGATAAGAAGCCT+GGG | + | chr3_1:93000979-93000998 | None:intergenic | 45.0% | |
| ATCAGTGAGGATAAGAAGCC+TGG | + | chr3_1:93000980-93000999 | None:intergenic | 45.0% | |
| GATCAGTTCTTGGATCAGTG+AGG | + | chr3_1:93000993-93001012 | None:intergenic | 45.0% | |
| CAAAAACCAATGGGGCTGTT+TGG | + | chr3_1:93001462-93001481 | None:intergenic | 45.0% | |
| CTTGTAAACCAACTTGGGAG+AGG | + | chr3_1:93001695-93001714 | None:intergenic | 45.0% | |
| TGTTTGTGTGCAGCCAATCA+AGG | - | chr3_1:93001830-93001849 | Msa0388540:intron | 45.0% | |
| CCAATGTCGACATATCGCAT+AGG | + | chr3_1:93001906-93001925 | None:intergenic | 45.0% | |
| CCTATGCGATATGTCGACAT+TGG | - | chr3_1:93001903-93001922 | Msa0388540:intron | 45.0% | |
| AACAAGGGCAAGCACAGTAT+AGG | - | chr3_1:93001939-93001958 | Msa0388540:intron | 45.0% | |
| !!! | GTCTGTTTTGGCTTTTGGCT+AGG | - | chr3_1:93001964-93001983 | Msa0388540:intron | 45.0% |
| !!! | GTTTTGGCTTTTGGCTAGGA+TGG | - | chr3_1:93001968-93001987 | Msa0388540:intron | 45.0% |
| TGGGGAACAATTGCCACATA+TGG | + | chr3_1:93002103-93002122 | None:intergenic | 45.0% | |
| ATGTGGCAATTGTTCCCCAT+CGG | - | chr3_1:93002104-93002123 | Msa0388540:intron | 45.0% | |
| ! | TTGTTCCCCATCGGTTGAAT+TGG | - | chr3_1:93002113-93002132 | Msa0388540:intron | 45.0% |
| AACCTGCCAATTCAACCGAT+GGG | + | chr3_1:93002122-93002141 | None:intergenic | 45.0% | |
| AAACCTGCCAATTCAACCGA+TGG | + | chr3_1:93002123-93002142 | None:intergenic | 45.0% | |
| !! | CTATCCCCAATGATGGACAA+TGG | - | chr3_1:93002280-93002299 | Msa0388540:intron | 45.0% |
| TCGATCAAGTACCAGCTTCT+GGG | + | chr3_1:93002383-93002402 | None:intergenic | 45.0% | |
| ATCGATCAAGTACCAGCTTC+TGG | + | chr3_1:93002384-93002403 | None:intergenic | 45.0% | |
| TAGATTTGTCTTGCAGCTGC+AGG | - | chr3_1:93002679-93002698 | Msa0388540:CDS | 45.0% | |
| AGATTTGTCTTGCAGCTGCA+GGG | - | chr3_1:93002680-93002699 | Msa0388540:CDS | 45.0% | |
| !! | AGGAGCAGGTATTTGTTGTG+GGG | + | chr3_1:93002731-93002750 | None:intergenic | 45.0% |
| !! | CAGGAGCAGGTATTTGTTGT+GGG | + | chr3_1:93002732-93002751 | None:intergenic | 45.0% |
| ACAAACGTAGACCAAGAACC+AGG | + | chr3_1:93003017-93003036 | None:intergenic | 45.0% | |
| ! | ATCTTCAAGCGCCGTAACGA+TGG | - | chr3_1:93000637-93000656 | Msa0388540:three_prime_UTR | 50.0% |
| ! | ACTGGTGCCAATGCTATTGC+TGG | - | chr3_1:93000901-93000920 | Msa0388540:intron | 50.0% |
| GTGCCAATGCTATTGCTGGA+AGG | - | chr3_1:93000905-93000924 | Msa0388540:intron | 50.0% | |
| GTGCCTTCCAGCAATAGCAT+TGG | + | chr3_1:93000911-93000930 | None:intergenic | 50.0% | |
| GTCAATCCAAACAGCCCCAT+TGG | - | chr3_1:93001453-93001472 | Msa0388540:intron | 50.0% | |
| GTCTTAAGCCTCTCCCAAGT+TGG | - | chr3_1:93001684-93001703 | Msa0388540:CDS | 50.0% | |
| CCAAGAGCAGCTTCCTTGAT+TGG | + | chr3_1:93001846-93001865 | None:intergenic | 50.0% | |
| CCAATCAAGGAAGCTGCTCT+TGG | - | chr3_1:93001843-93001862 | Msa0388540:intron | 50.0% | |
| TGGAATCCCTGCCAACAACA+AGG | - | chr3_1:93001923-93001942 | Msa0388540:intron | 50.0% | |
| GGAATCCCTGCCAACAACAA+GGG | - | chr3_1:93001924-93001943 | Msa0388540:intron | 50.0% | |
| ! | ACTGTGCTTGCCCTTGTTGT+TGG | + | chr3_1:93001937-93001956 | None:intergenic | 50.0% |
| TGACATCCCACTTAAGGCCA+GGG | + | chr3_1:93002019-93002038 | None:intergenic | 50.0% | |
| ATGACATCCCACTTAAGGCC+AGG | + | chr3_1:93002020-93002039 | None:intergenic | 50.0% | |
| ! | TGGCCTTAAGTGGGATGTCA+TGG | - | chr3_1:93002019-93002038 | Msa0388540:intron | 50.0% |
| ACCTGCCAATTCAACCGATG+GGG | + | chr3_1:93002121-93002140 | None:intergenic | 50.0% | |
| TAGAGAACCTGAGGAGGCAA+AGG | - | chr3_1:93002197-93002216 | Msa0388540:intron | 50.0% | |
| GCAGGTTCTATCCCCAATGA+TGG | - | chr3_1:93002273-93002292 | Msa0388540:intron | 50.0% | |
| CAGGCCATTGTCCATCATTG+GGG | + | chr3_1:93002287-93002306 | None:intergenic | 50.0% | |
| GCAGGCCATTGTCCATCATT+GGG | + | chr3_1:93002288-93002307 | None:intergenic | 50.0% | |
| AGCAGGCCATTGTCCATCAT+TGG | + | chr3_1:93002289-93002308 | None:intergenic | 50.0% | |
| CATGTTTGGTCGATAGCAGC+AGG | + | chr3_1:93002306-93002325 | None:intergenic | 50.0% | |
| CTGCTGCTATCGACCAAACA+TGG | - | chr3_1:93002304-93002323 | Msa0388540:intron | 50.0% | |
| ACAGCAGGAACTGCTGGAAT+AGG | + | chr3_1:93002348-93002367 | None:intergenic | 50.0% | |
| AGCAGTTCCTGCTGTCAACT+GGG | - | chr3_1:93002353-93002372 | Msa0388540:intron | 50.0% | |
| CGATCAAGTACCAGCTTCTG+GGG | + | chr3_1:93002382-93002401 | None:intergenic | 50.0% | |
| GATTTGTCTTGCAGCTGCAG+GGG | - | chr3_1:93002681-93002700 | Msa0388540:CDS | 50.0% | |
| ATTTGTCTTGCAGCTGCAGG+GGG | - | chr3_1:93002682-93002701 | Msa0388540:CDS | 50.0% | |
| ! | CCAGGAGCAGGTATTTGTTG+TGG | + | chr3_1:93002733-93002752 | None:intergenic | 50.0% |
| CCACAACAAATACCTGCTCC+TGG | - | chr3_1:93002730-93002749 | Msa0388540:CDS | 50.0% | |
| GTTGAGTCCATCCAAGCAAC+TGG | - | chr3_1:93002754-93002773 | Msa0388540:CDS | 50.0% | |
| CTTATTCCCAGCCAGTTGCT+TGG | + | chr3_1:93002768-93002787 | None:intergenic | 50.0% | |
| ACTGGCTGGGAATAAGCTAG+TGG | - | chr3_1:93002772-93002791 | Msa0388540:CDS | 50.0% | |
| ACGTAGACCAAGAACCAGGA+GGG | + | chr3_1:93003013-93003032 | None:intergenic | 50.0% | |
| AACGTAGACCAAGAACCAGG+AGG | + | chr3_1:93003014-93003033 | None:intergenic | 50.0% | |
| ! | AGTACCGAGATGGACATCGG+CGG | + | chr3_1:93000587-93000606 | None:intergenic | 55.0% |
| !! | GCTTGCCCTTGTTGTTGGCA+GGG | + | chr3_1:93001932-93001951 | None:intergenic | 55.0% |
| !! | TGCTTGCCCTTGTTGTTGGC+AGG | + | chr3_1:93001933-93001952 | None:intergenic | 55.0% |
| !! | AGGATGGTGTTGCAGATGCG+TGG | - | chr3_1:93001984-93002003 | Msa0388540:intron | 55.0% |
| !! | CATTCGCCCTGGCCTTAAGT+GGG | - | chr3_1:93002010-93002029 | Msa0388540:intron | 55.0% |
| ! | TCCCCATCGGTTGAATTGGC+AGG | - | chr3_1:93002117-93002136 | Msa0388540:intron | 55.0% |
| TCTTGCTCCTTTGCCTCCTC+AGG | + | chr3_1:93002207-93002226 | None:intergenic | 55.0% | |
| TGAGGAGGCAAAGGAGCAAG+AGG | - | chr3_1:93002206-93002225 | Msa0388540:intron | 55.0% | |
| GGAACTGCTGGAATAGGCTC+TGG | + | chr3_1:93002342-93002361 | None:intergenic | 55.0% | |
| CAGTTGACAGCAGGAACTGC+TGG | + | chr3_1:93002354-93002373 | None:intergenic | 55.0% | |
| CAGCAGTTCCTGCTGTCAAC+TGG | - | chr3_1:93002352-93002371 | Msa0388540:intron | 55.0% | |
| !! | GCAGGTATTTGTTGTGGGGC+TGG | + | chr3_1:93002727-93002746 | None:intergenic | 55.0% |
| ATGGACTCAACTCCAGGAGC+AGG | + | chr3_1:93002745-93002764 | None:intergenic | 55.0% | |
| ! | GCTTGGATGGACTCAACTCC+AGG | + | chr3_1:93002751-93002770 | None:intergenic | 55.0% |
| AGTCCATCCAAGCAACTGGC+TGG | - | chr3_1:93002758-93002777 | Msa0388540:CDS | 55.0% | |
| GTCCATCCAAGCAACTGGCT+GGG | - | chr3_1:93002759-93002778 | Msa0388540:CDS | 55.0% | |
| TTCCCAGCCAGTTGCTTGGA+TGG | + | chr3_1:93002764-93002783 | None:intergenic | 55.0% | |
| TTGAGGTGATTTCCCCCTCC+TGG | - | chr3_1:93002996-93003015 | Msa0388540:CDS | 55.0% | |
| ! | GATTTCCCCCTCCTGGTTCT+TGG | - | chr3_1:93003003-93003022 | Msa0388540:CDS | 55.0% |
| GTAGACCAAGAACCAGGAGG+GGG | + | chr3_1:93003011-93003030 | None:intergenic | 55.0% | |
| CGTAGACCAAGAACCAGGAG+GGG | + | chr3_1:93003012-93003031 | None:intergenic | 55.0% | |
| ! | GTGGCGGAAGTAGCAGAGTG+AGG | + | chr3_1:93000508-93000527 | None:intergenic | 60.0% |
| ! | CTCTGCTACTTCCGCCACCA+TGG | - | chr3_1:93000510-93000529 | Msa0388540:three_prime_UTR | 60.0% |
| AAGTTGACGAGGGGCAGCCA+TGG | + | chr3_1:93000530-93000549 | None:intergenic | 60.0% | |
| CATCGGCGGCAAGCATCATC+TGG | + | chr3_1:93000573-93000592 | None:intergenic | 60.0% | |
| CTTGCCGCCGATGTCCATCT+CGG | - | chr3_1:93000580-93000599 | Msa0388540:three_prime_UTR | 60.0% | |
| ! | ATTGCTGGAAGGCACACGCC+TGG | - | chr3_1:93000916-93000935 | Msa0388540:intron | 60.0% |
| ATGCGTGGAACCATTCGCCC+TGG | - | chr3_1:93001999-93002018 | Msa0388540:intron | 60.0% | |
| CCACTTAAGGCCAGGGCGAA+TGG | + | chr3_1:93002012-93002031 | None:intergenic | 60.0% | |
| !! | CCATTCGCCCTGGCCTTAAG+TGG | - | chr3_1:93002009-93002028 | Msa0388540:intron | 60.0% |
| TTGCAGCTGCAGGGGGTGAT+TGG | - | chr3_1:93002689-93002708 | Msa0388540:CDS | 60.0% | |
| TGCAGCTGCAGGGGGTGATT+GGG | - | chr3_1:93002690-93002709 | Msa0388540:CDS | 60.0% | |
| TTGACGAGGGGCAGCCATGG+TGG | + | chr3_1:93000527-93000546 | None:intergenic | 65.0% | |
| AACTGGGCAGCCCCAGAAGC+TGG | - | chr3_1:93002369-93002388 | Msa0388540:intron | 65.0% | |
| GCAGCTGCAGGGGGTGATTG+GGG | - | chr3_1:93002691-93002710 | Msa0388540:CDS | 65.0% | |
| ACGAGGGGCAGCCATGGTGG+CGG | + | chr3_1:93000524-93000543 | None:intergenic | 70.0% | |
| GGGGCTGCCCAGTTGACAGC+AGG | + | chr3_1:93002363-93002382 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 93000391 | 93003187 | 93000391 | ID=Msa0388540;Name=Msa0388540 |
| chr3_1 | mRNA | 93000391 | 93003187 | 93000391 | ID=Msa0388540-mRNA-1;Parent=Msa0388540;Name=Msa0388540-mRNA-1;_AED=0.04;_eAED=0.04;_QI=138|1|1|1|1|1|5|401|297 |
| chr3_1 | exon | 93000391 | 93000883 | 93000391 | ID=Msa0388540-mRNA-1:exon:26237;Parent=Msa0388540-mRNA-1 |
| chr3_1 | exon | 93001188 | 93001398 | 93001188 | ID=Msa0388540-mRNA-1:exon:26236;Parent=Msa0388540-mRNA-1 |
| chr3_1 | exon | 93001538 | 93001735 | 93001538 | ID=Msa0388540-mRNA-1:exon:26235;Parent=Msa0388540-mRNA-1 |
| chr3_1 | exon | 93002561 | 93002823 | 93002561 | ID=Msa0388540-mRNA-1:exon:26234;Parent=Msa0388540-mRNA-1 |
| chr3_1 | exon | 93002920 | 93003187 | 93002920 | ID=Msa0388540-mRNA-1:exon:26233;Parent=Msa0388540-mRNA-1 |
| chr3_1 | five_prime_UTR | 93003050 | 93003187 | 93003050 | ID=Msa0388540-mRNA-1:five_prime_utr;Parent=Msa0388540-mRNA-1 |
| chr3_1 | CDS | 93002920 | 93003049 | 93002920 | ID=Msa0388540-mRNA-1:cds;Parent=Msa0388540-mRNA-1 |
| chr3_1 | CDS | 93002561 | 93002823 | 93002561 | ID=Msa0388540-mRNA-1:cds;Parent=Msa0388540-mRNA-1 |
| chr3_1 | CDS | 93001538 | 93001735 | 93001538 | ID=Msa0388540-mRNA-1:cds;Parent=Msa0388540-mRNA-1 |
| chr3_1 | CDS | 93001188 | 93001398 | 93001188 | ID=Msa0388540-mRNA-1:cds;Parent=Msa0388540-mRNA-1 |
| chr3_1 | CDS | 93000792 | 93000883 | 93000792 | ID=Msa0388540-mRNA-1:cds;Parent=Msa0388540-mRNA-1 |
| chr3_1 | three_prime_UTR | 93000391 | 93000791 | 93000391 | ID=Msa0388540-mRNA-1:three_prime_utr;Parent=Msa0388540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
