Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1225730 | XP_003608862.1 | 99.588 | 243 | 1 | 0 | 1 | 243 | 1 | 243 | 2.37e-176 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1225730 | sp|Q08480|KAD4_ORYSJ | 91.286 | 241 | 21 | 0 | 2 | 242 | 3 | 243 | 1.92e-166 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa1225730 | 0.813570 | 2.393918e-51 | -8.615850e-47 |
| Msa0004760 | Msa1225730 | 0.818667 | 1.739079e-52 | -8.615850e-47 |
| Msa0004790 | Msa1225730 | 0.850298 | 1.858298e-60 | -8.615850e-47 |
| Msa0011160 | Msa1225730 | -0.800241 | 1.580417e-48 | -8.615850e-47 |
| Msa0029850 | Msa1225730 | -0.836181 | 1.087593e-56 | -8.615850e-47 |
| Msa0042980 | Msa1225730 | 0.850285 | 1.874998e-60 | -8.615850e-47 |
| Msa0051460 | Msa1225730 | -0.807139 | 5.847595e-50 | -8.615850e-47 |
| Msa0071550 | Msa1225730 | -0.836077 | 1.156147e-56 | -8.615850e-47 |
| Msa0077180 | Msa1225730 | -0.817410 | 3.345415e-52 | -8.615850e-47 |
| Msa0094940 | Msa1225730 | 0.834572 | 2.774352e-56 | -8.615850e-47 |
| Msa0096940 | Msa1225730 | 0.803272 | 3.773986e-49 | -8.615850e-47 |
| Msa0102120 | Msa1225730 | -0.815698 | 8.090088e-52 | -8.615850e-47 |
| Msa0103490 | Msa1225730 | 0.812376 | 4.373414e-51 | -8.615850e-47 |
| Msa0607540 | Msa1225730 | -0.823554 | 1.301537e-53 | -8.615850e-47 |
| Msa0613460 | Msa1225730 | -0.815003 | 1.154610e-51 | -8.615850e-47 |
| Msa0615270 | Msa1225730 | 0.812905 | 3.350457e-51 | -8.615850e-47 |
| Msa0621750 | Msa1225730 | 0.858239 | 9.440837e-63 | -8.615850e-47 |
| Msa0622600 | Msa1225730 | -0.809199 | 2.129660e-50 | -8.615850e-47 |
| Msa0640380 | Msa1225730 | -0.815462 | 9.131795e-52 | -8.615850e-47 |
| Msa0647830 | Msa1225730 | -0.827396 | 1.601103e-54 | -8.615850e-47 |
| Msa0658570 | Msa1225730 | -0.817554 | 3.105311e-52 | -8.615850e-47 |
| Msa0660870 | Msa1225730 | -0.805037 | 1.619372e-49 | -8.615850e-47 |
| Msa0678820 | Msa1225730 | -0.821044 | 4.978122e-53 | -8.615850e-47 |
| Msa0690440 | Msa1225730 | -0.827581 | 1.445397e-54 | -8.615850e-47 |
| Msa0698310 | Msa1225730 | 0.803076 | 4.141859e-49 | -8.615850e-47 |
| Msa0716750 | Msa1225730 | -0.814256 | 1.690521e-51 | -8.615850e-47 |
| Msa0724560 | Msa1225730 | -0.824181 | 9.275867e-54 | -8.615850e-47 |
| Msa0799280 | Msa1225730 | -0.806906 | 6.550574e-50 | -8.615850e-47 |
| Msa0125050 | Msa1225730 | -0.807459 | 5.002979e-50 | -8.615850e-47 |
| Msa0144970 | Msa1225730 | 0.810352 | 1.202848e-50 | -8.615850e-47 |
| Msa0146910 | Msa1225730 | 0.814535 | 1.466436e-51 | -8.615850e-47 |
| Msa0169820 | Msa1225730 | -0.841067 | 5.950152e-58 | -8.615850e-47 |
| Msa0178860 | Msa1225730 | 0.831570 | 1.548612e-55 | -8.615850e-47 |
| Msa0183010 | Msa1225730 | 0.840612 | 7.830008e-58 | -8.615850e-47 |
| Msa0223410 | Msa1225730 | 0.801361 | 9.337086e-49 | -8.615850e-47 |
| Msa0226620 | Msa1225730 | 0.836059 | 1.168124e-56 | -8.615850e-47 |
| Msa0230640 | Msa1225730 | 0.836967 | 6.859396e-57 | -8.615850e-47 |
| Msa1225730 | Msa1235400 | -0.803809 | 2.919331e-49 | -8.615850e-47 |
| Msa1225730 | Msa1258380 | 0.939125 | 2.146456e-99 | -8.615850e-47 |
| Msa1225730 | Msa1264860 | 0.870251 | 1.680774e-66 | -8.615850e-47 |
| Msa1225730 | Msa1287480 | -0.816512 | 5.323588e-52 | -8.615850e-47 |
| Msa1225730 | Msa1289530 | -0.802117 | 6.532248e-49 | -8.615850e-47 |
| Msa1225730 | Msa1295540 | 0.813961 | 1.963902e-51 | -8.615850e-47 |
| Msa1225730 | Msa1307740 | -0.851386 | 9.179134e-61 | -8.615850e-47 |
| Msa1225730 | Msa1309880 | -0.863267 | 2.812498e-64 | -8.615850e-47 |
| Msa1225730 | Msa1314770 | -0.807369 | 5.228885e-50 | -8.615850e-47 |
| Msa1225730 | Msa1364330 | 0.828759 | 7.518878e-55 | -8.615850e-47 |
| Msa1225730 | Msa1376890 | -0.817341 | 3.467726e-52 | -8.615850e-47 |
| Msa1225730 | Msa1390280 | 0.803044 | 4.206945e-49 | -8.615850e-47 |
| Msa1225730 | Msa1404240 | 0.842208 | 2.975958e-58 | -8.615850e-47 |
| Msa1225730 | Msa1407650 | -0.814411 | 1.561577e-51 | -8.615850e-47 |
| Msa1225730 | Msa1416140 | 0.807313 | 5.372257e-50 | -8.615850e-47 |
| Msa1225730 | Msa1444250 | 0.937298 | 4.348801e-98 | -8.615850e-47 |
| Msa1225730 | Msa1451620 | 0.867183 | 1.651508e-65 | -8.615850e-47 |
| Msa1225730 | Msa1462060 | -0.801672 | 8.061352e-49 | -8.615850e-47 |
| Msa1225730 | Msa1463650 | 0.865453 | 5.839310e-65 | -8.615850e-47 |
| Msa0377610 | Msa1225730 | 0.845346 | 4.300213e-59 | -8.615850e-47 |
| Msa0381600 | Msa1225730 | 0.823904 | 1.077406e-53 | -8.615850e-47 |
| Msa0383490 | Msa1225730 | 0.807241 | 5.563778e-50 | -8.615850e-47 |
| Msa0388540 | Msa1225730 | 0.831978 | 1.228222e-55 | -8.615850e-47 |
| Msa0389360 | Msa1225730 | -0.841084 | 5.888815e-58 | -8.615850e-47 |
| Msa0389810 | Msa1225730 | -0.853239 | 2.725959e-61 | -8.615850e-47 |
| Msa0392040 | Msa1225730 | 0.833497 | 5.154466e-56 | -8.615850e-47 |
| Msa0394340 | Msa1225730 | -0.810906 | 9.129169e-51 | -8.615850e-47 |
| Msa0426820 | Msa1225730 | 0.846485 | 2.109051e-59 | -8.615850e-47 |
| Msa0427380 | Msa1225730 | 0.808414 | 3.133912e-50 | -8.615850e-47 |
| Msa0433410 | Msa1225730 | 0.802358 | 5.825802e-49 | -8.615850e-47 |
| Msa0438050 | Msa1225730 | -0.826131 | 3.210441e-54 | -8.615850e-47 |
| Msa0449760 | Msa1225730 | -0.806332 | 8.659962e-50 | -8.615850e-47 |
| Msa0457010 | Msa1225730 | -0.826769 | 2.261497e-54 | -8.615850e-47 |
| Msa0467740 | Msa1225730 | 0.850688 | 1.444802e-60 | -8.615850e-47 |
| Msa0468130 | Msa1225730 | -0.843393 | 1.440567e-58 | -8.615850e-47 |
| Msa0469940 | Msa1225730 | 0.849230 | 3.694041e-60 | -8.615850e-47 |
| Msa0482190 | Msa1225730 | 0.937856 | 1.752508e-98 | -8.615850e-47 |
| Msa0982270 | Msa1225730 | -0.842581 | 2.369820e-58 | -8.615850e-47 |
| Msa1006850 | Msa1225730 | -0.804506 | 2.090406e-49 | -8.615850e-47 |
| Msa1021340 | Msa1225730 | -0.821732 | 3.452949e-53 | -8.615850e-47 |
| Msa1047720 | Msa1225730 | -0.801853 | 7.400723e-49 | -8.615850e-47 |
| Msa1054410 | Msa1225730 | -0.857210 | 1.905758e-62 | -8.615850e-47 |
| Msa1075080 | Msa1225730 | 0.840759 | 7.164064e-58 | -8.615850e-47 |
| Msa1075220 | Msa1225730 | 0.807833 | 4.166178e-50 | -8.615850e-47 |
| Msa1079730 | Msa1225730 | 0.815116 | 1.090209e-51 | -8.615850e-47 |
| Msa0260270 | Msa1225730 | 0.838427 | 2.894458e-57 | -8.615850e-47 |
| Msa0344690 | Msa1225730 | 0.831670 | 1.463600e-55 | -8.615850e-47 |
| Msa0347610 | Msa1225730 | -0.806695 | 7.260939e-50 | -8.615850e-47 |
| Msa1119310 | Msa1225730 | 0.812065 | 5.113306e-51 | -8.615850e-47 |
| Msa1124540 | Msa1225730 | 0.822593 | 2.180352e-53 | -8.615850e-47 |
| Msa1144720 | Msa1225730 | 0.851343 | 9.444024e-61 | -8.615850e-47 |
| Msa1148720 | Msa1225730 | -0.803921 | 2.767881e-49 | -8.615850e-47 |
| Msa1162550 | Msa1225730 | 0.803921 | 2.766917e-49 | -8.615850e-47 |
| Msa1163590 | Msa1225730 | 0.800472 | 1.418540e-48 | -8.615850e-47 |
| Msa1165700 | Msa1225730 | 0.813639 | 2.311361e-51 | -8.615850e-47 |
| Msa1168040 | Msa1225730 | 0.830116 | 3.520549e-55 | -8.615850e-47 |
| Msa1171730 | Msa1225730 | -0.808711 | 2.708638e-50 | -8.615850e-47 |
| Msa1174310 | Msa1225730 | -0.803085 | 4.124507e-49 | -8.615850e-47 |
| Msa1183100 | Msa1225730 | 0.816425 | 5.566206e-52 | -8.615850e-47 |
| Msa1202770 | Msa1225730 | 0.823383 | 1.427039e-53 | -8.615850e-47 |
| Msa1222280 | Msa1225730 | -0.815661 | 8.246567e-52 | -8.615850e-47 |
| Msa0485500 | Msa1225730 | 0.939042 | 2.466214e-99 | -8.615850e-47 |
| Msa0514130 | Msa1225730 | 0.849825 | 2.521767e-60 | -8.615850e-47 |
| Msa0526670 | Msa1225730 | 0.821685 | 3.540707e-53 | -8.615850e-47 |
| Msa0526740 | Msa1225730 | 0.804770 | 1.841413e-49 | -8.615850e-47 |
| Msa0532810 | Msa1225730 | 0.866976 | 1.922204e-65 | -8.615850e-47 |
| Msa0543900 | Msa1225730 | -0.816924 | 4.303623e-52 | -8.615850e-47 |
| Msa0553460 | Msa1225730 | -0.825797 | 3.853639e-54 | -8.615850e-47 |
| Msa0599770 | Msa1225730 | -0.810035 | 1.408088e-50 | -8.615850e-47 |
| Msa0843250 | Msa1225730 | -0.801440 | 8.997180e-49 | -8.615850e-47 |
| Msa0848900 | Msa1225730 | -0.814218 | 1.723545e-51 | -8.615850e-47 |
| Msa0864470 | Msa1225730 | 0.804151 | 2.478995e-49 | -8.615850e-47 |
| Msa0876850 | Msa1225730 | 0.832709 | 8.098321e-56 | -8.615850e-47 |
| Msa0881160 | Msa1225730 | -0.809146 | 2.185977e-50 | -8.615850e-47 |
| Msa0881210 | Msa1225730 | 0.862248 | 5.796281e-64 | -8.615850e-47 |
| Msa0896760 | Msa1225730 | -0.814896 | 1.219537e-51 | -8.615850e-47 |
| Msa0919520 | Msa1225730 | -0.804274 | 2.336904e-49 | -8.615850e-47 |
| Msa0923320 | Msa1225730 | -0.829463 | 5.075421e-55 | -8.615850e-47 |
| Msa0942080 | Msa1225730 | 0.836250 | 1.044395e-56 | -8.615850e-47 |
| Msa0944550 | Msa1225730 | -0.802035 | 6.791388e-49 | -8.615850e-47 |
| Msa0956570 | Msa1225730 | -0.803906 | 2.787502e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1225730 | MtrunA17_Chr4g0057771 | 99.588 | 243 | 1 | 0 | 1 | 243 | 1 | 243 | 2.18e-180 | 494 |
| Msa1225730 | MtrunA17_Chr4g0017231 | 37.559 | 213 | 122 | 4 | 31 | 242 | 89 | 291 | 1.20e-42 | 146 |
| Msa1225730 | MtrunA17_Chr2g0305051 | 37.778 | 225 | 123 | 5 | 23 | 243 | 66 | 277 | 1.35e-40 | 146 |
| Msa1225730 | MtrunA17_Chr1g0181801 | 31.683 | 202 | 120 | 4 | 31 | 219 | 113 | 309 | 2.03e-28 | 110 |
| Msa1225730 | MtrunA17_Chr7g0263541 | 29.703 | 202 | 124 | 4 | 31 | 219 | 38 | 234 | 1.69e-24 | 98.2 |
| Msa1225730 | MtrunA17_Chr8g0337051 | 25.714 | 210 | 123 | 4 | 32 | 241 | 24 | 200 | 6.11e-19 | 82.0 |
| Msa1225730 | MtrunA17_Chr5g0428971 | 27.143 | 210 | 120 | 4 | 33 | 242 | 35 | 211 | 4.03e-17 | 77.4 |
| Msa1225730 | MtrunA17_Chr4g0018221 | 26.667 | 210 | 121 | 4 | 33 | 242 | 58 | 234 | 3.70e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1225730 | AT5G63400.1 | 81.743 | 241 | 44 | 0 | 2 | 242 | 6 | 246 | 1.65e-152 | 424 |
| Msa1225730 | AT5G50370.1 | 79.654 | 231 | 47 | 0 | 2 | 232 | 7 | 237 | 6.79e-144 | 402 |
| Msa1225730 | AT5G50370.2 | 82.381 | 210 | 37 | 0 | 2 | 211 | 7 | 216 | 5.04e-135 | 379 |
| Msa1225730 | AT5G63400.2 | 85.000 | 180 | 27 | 0 | 2 | 181 | 6 | 185 | 1.63e-116 | 331 |
| Msa1225730 | AT5G35170.2 | 34.821 | 224 | 135 | 4 | 21 | 243 | 71 | 284 | 1.25e-38 | 141 |
| Msa1225730 | AT5G35170.1 | 34.821 | 224 | 135 | 4 | 21 | 243 | 71 | 284 | 1.42e-38 | 141 |
| Msa1225730 | AT5G47840.1 | 35.047 | 214 | 128 | 4 | 31 | 243 | 66 | 269 | 1.59e-36 | 130 |
| Msa1225730 | AT5G47840.2 | 38.333 | 180 | 102 | 3 | 31 | 209 | 66 | 237 | 2.20e-34 | 124 |
| Msa1225730 | AT2G37250.1 | 30.693 | 202 | 122 | 4 | 31 | 219 | 53 | 249 | 4.11e-26 | 103 |
| Msa1225730 | AT2G39270.1 | 30.603 | 232 | 132 | 6 | 10 | 219 | 38 | 262 | 5.61e-25 | 100 |
| Msa1225730 | AT5G26667.3 | 27.064 | 218 | 126 | 4 | 25 | 242 | 10 | 194 | 3.35e-21 | 88.2 |
| Msa1225730 | AT5G26667.2 | 27.064 | 218 | 126 | 4 | 25 | 242 | 10 | 194 | 3.35e-21 | 88.2 |
| Msa1225730 | AT5G26667.4 | 27.064 | 218 | 126 | 4 | 25 | 242 | 10 | 194 | 3.35e-21 | 88.2 |
| Msa1225730 | AT5G26667.1 | 27.064 | 218 | 126 | 4 | 25 | 242 | 10 | 194 | 4.80e-21 | 88.2 |
| Msa1225730 | AT3G60180.1 | 26.540 | 211 | 122 | 4 | 32 | 242 | 24 | 201 | 7.10e-19 | 82.0 |
| Msa1225730 | AT3G60180.2 | 26.540 | 211 | 122 | 4 | 32 | 242 | 24 | 201 | 7.10e-19 | 82.0 |
| Msa1225730 | AT4G25280.1 | 29.381 | 194 | 104 | 4 | 33 | 226 | 57 | 217 | 1.23e-18 | 82.8 |
| Msa1225730 | AT4G25280.2 | 29.381 | 194 | 104 | 4 | 33 | 226 | 57 | 217 | 1.23e-18 | 82.8 |
Find 83 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTCCTCCCAAGGTTTC+TGG | 0.086280 | 8_1:+91175166 | Msa1225730:CDS |
| TATTGATTACTATTCGAAAA+AGG | 0.219468 | 8_1:+91176552 | Msa1225730:CDS |
| ATCCTTGAGGAGCGAATTAC+TGG | 0.241993 | 8_1:+91175100 | Msa1225730:CDS |
| AAGAGAAGAGGAGGGTAATT+TGG | 0.263670 | 8_1:-91172644 | None:intergenic |
| TGTGCTTGGACCACAGTTCT+TGG | 0.275665 | 8_1:-91174866 | None:intergenic |
| ACCTCAGATGTCACCTCTTT+GGG | 0.277455 | 8_1:-91176607 | None:intergenic |
| CAGAAAGGTTTCATTCTTGA+TGG | 0.304326 | 8_1:+91174839 | Msa1225730:CDS |
| GACCTCAGATGTCACCTCTT+TGG | 0.306316 | 8_1:-91176608 | None:intergenic |
| TTGCTCCTCCCAAGGTTTCT+GGG | 0.328170 | 8_1:+91175167 | Msa1225730:CDS |
| AATAAGACGTTTGTCAGGTT+TGG | 0.344040 | 8_1:-91172854 | None:intergenic |
| TACCCAGTCGCCAATCATTA+AGG | 0.344864 | 8_1:+91174549 | Msa1225730:CDS |
| TGATGAGATGCTGCAGAAAC+AGG | 0.374899 | 8_1:+91175033 | Msa1225730:CDS |
| GTTTCTGATGACTTGGTTGT+TGG | 0.382058 | 8_1:+91174782 | Msa1225730:CDS |
| GATGCAGGCCCACCTGGATC+TGG | 0.415044 | 8_1:+91174520 | Msa1225730:intron |
| TTTATACTTTGCGTTAGGTT+GGG | 0.426389 | 8_1:-91172617 | None:intergenic |
| TGCTTATGCCACTTGGCTAC+TGG | 0.433342 | 8_1:+91174580 | Msa1225730:CDS |
| CGACGAAGACATATACTACT+TGG | 0.436535 | 8_1:+91172552 | None:intergenic |
| ATTTAAATAAAAGTAGAAAC+TGG | 0.437040 | 8_1:-91176711 | None:intergenic |
| TGGGAGGAGCAAACTTTGTA+TGG | 0.440423 | 8_1:-91175156 | None:intergenic |
| TTCAACTTCGCTGCAAATGC+CGG | 0.445844 | 8_1:+91176757 | Msa1225730:three_prime_UTR |
| TCATCCTTGCGCTGGATAAG+AGG | 0.449192 | 8_1:-91175728 | None:intergenic |
| TAGAGTTCCCCTTGGACCCT+CGG | 0.458256 | 8_1:+91176649 | Msa1225730:exon |
| ATCCTTAATGATTGGCGACT+GGG | 0.472147 | 8_1:-91174551 | None:intergenic |
| GGTAATGGCGAGTTCTAACT+TGG | 0.473036 | 8_1:+91172774 | Msa1225730:exon |
| GTTTCACAGGCAAACTGAAC+CGG | 0.476704 | 8_1:+91175784 | Msa1225730:CDS |
| ATCATCAACCCCAGAAACCT+TGG | 0.477570 | 8_1:-91175176 | None:intergenic |
| AGAGTTCCCCTTGGACCCTC+GGG | 0.478030 | 8_1:+91176650 | Msa1225730:exon |
| AAGACGTTTGTCAGGTTTGG+AGG | 0.481705 | 8_1:-91172851 | None:intergenic |
| AGTTCGATCCCGAGGGTCCA+AGG | 0.486880 | 8_1:-91176658 | None:intergenic |
| AAAAGAGAAAAGAGAAGAGG+AGG | 0.487908 | 8_1:-91172653 | None:intergenic |
| AAAGAGAAAAGAGAAGAGGA+GGG | 0.489132 | 8_1:-91172652 | None:intergenic |
| GCATTTGCAGCGAAGTTGAA+AGG | 0.491114 | 8_1:-91176754 | None:intergenic |
| AAGGCAATACCTTCTGTGCT+TGG | 0.492764 | 8_1:-91174880 | None:intergenic |
| TGGTAGGTTCTGCCACTGGA+TGG | 0.498072 | 8_1:-91175136 | None:intergenic |
| TGCTCCTCCCAAGGTTTCTG+GGG | 0.498541 | 8_1:+91175168 | Msa1225730:CDS |
| CATCCTTAATGATTGGCGAC+TGG | 0.500176 | 8_1:-91174552 | None:intergenic |
| ACGAGAATAAGACGTTTGTC+AGG | 0.504583 | 8_1:-91172859 | None:intergenic |
| CAGTACTCATCCTTAATGAT+TGG | 0.508765 | 8_1:-91174559 | None:intergenic |
| AGCGAAAGAAGCTATGGAAA+AGG | 0.511818 | 8_1:+91174651 | Msa1225730:CDS |
| CAAGACTCGAGGCGTTTCAC+AGG | 0.520486 | 8_1:+91175771 | Msa1225730:CDS |
| CTGCAGTGTCATCCTTGCGC+TGG | 0.520703 | 8_1:-91175736 | None:intergenic |
| AGGAGCAAACTTTGTATGGT+AGG | 0.522477 | 8_1:-91175152 | None:intergenic |
| AGAACTTGTTTCTGATGACT+TGG | 0.528968 | 8_1:+91174775 | Msa1225730:CDS |
| CATTTGCAGCGAAGTTGAAA+GGG | 0.530308 | 8_1:-91176753 | None:intergenic |
| GGCCCACCTGGATCTGGAAA+AGG | 0.531197 | 8_1:+91174526 | Msa1225730:intron |
| TGGTCAAGAGACAATCCATT+GGG | 0.531434 | 8_1:-91176851 | None:intergenic |
| GTTCGATCCCGAGGGTCCAA+GGG | 0.534041 | 8_1:-91176657 | None:intergenic |
| TCAGATGTCACCTCTTTGGG+AGG | 0.540707 | 8_1:-91176604 | None:intergenic |
| TACAAAGTTTGCTCCTCCCA+AGG | 0.544011 | 8_1:+91175159 | Msa1225730:CDS |
| TGTATGGTAGGTTCTGCCAC+TGG | 0.548293 | 8_1:-91175140 | None:intergenic |
| TATTAAAGCGAAAGAAGCTA+TGG | 0.555441 | 8_1:+91174645 | Msa1225730:CDS |
| GTAGCAGCTAAAACCCCTCT+TGG | 0.556590 | 8_1:+91174622 | Msa1225730:CDS |
| TCATCAACCCCAGAAACCTT+GGG | 0.557308 | 8_1:-91175175 | None:intergenic |
| CTTTCGCTTTAATACCAAGA+GGG | 0.558792 | 8_1:-91174636 | None:intergenic |
| TGAGTACTGCTTATGCCACT+TGG | 0.559219 | 8_1:+91174573 | Msa1225730:CDS |
| ATTTGAAAACACCTGTGTAA+TGG | 0.560439 | 8_1:-91176871 | None:intergenic |
| AAGAAACCGTCATGTCAGAA+AGG | 0.567615 | 8_1:+91174824 | Msa1225730:CDS |
| ATGAAACCTTTCTGACATGA+CGG | 0.573422 | 8_1:-91174830 | None:intergenic |
| GAATGCAGCATGTTTCCCAA+TGG | 0.577560 | 8_1:+91176836 | Msa1225730:three_prime_UTR |
| GACAAACGTCTTATTCTCGT+TGG | 0.578794 | 8_1:+91172862 | Msa1225730:CDS |
| ATGGTCAAGAGACAATCCAT+TGG | 0.582121 | 8_1:-91176852 | None:intergenic |
| AACTGTGGTCCAAGCACAGA+AGG | 0.583530 | 8_1:+91174871 | Msa1225730:CDS |
| CAGCAGCACAGCAACGGTAA+TGG | 0.585962 | 8_1:+91172759 | Msa1225730:exon |
| GTCCAGTAATTCGCTCCTCA+AGG | 0.587235 | 8_1:-91175102 | None:intergenic |
| GGTAGGTTCTGCCACTGGAT+GGG | 0.601889 | 8_1:-91175135 | None:intergenic |
| TTTCGCTTTAATACCAAGAG+GGG | 0.604617 | 8_1:-91174635 | None:intergenic |
| TAAGCAGCAGTTCGATCCCG+AGG | 0.618701 | 8_1:-91176666 | None:intergenic |
| AGGAGCGAATTACTGGACGC+TGG | 0.631202 | 8_1:+91175107 | Msa1225730:CDS |
| AATTGATGACGCAATCCTTG+AGG | 0.634543 | 8_1:+91175087 | Msa1225730:CDS |
| TGAGCCTCTTATCCAGCGCA+AGG | 0.634937 | 8_1:+91175724 | Msa1225730:CDS |
| CGCTGGATACACCCATCCAG+TGG | 0.638248 | 8_1:+91175124 | Msa1225730:CDS |
| TTGTCTCTTGACCATTACAC+AGG | 0.638949 | 8_1:+91176860 | Msa1225730:three_prime_UTR |
| TGTCTCAATAGAGTTCCCCT+TGG | 0.639790 | 8_1:+91176641 | Msa1225730:exon |
| TCCCAAAGAGGTGACATCTG+AGG | 0.649172 | 8_1:+91176606 | Msa1225730:CDS |
| GATGAGATGCTGCAGAAACA+GGG | 0.659071 | 8_1:+91175034 | Msa1225730:CDS |
| TTCGATCCCGAGGGTCCAAG+GGG | 0.659628 | 8_1:-91176656 | None:intergenic |
| CTGTCACAGCAGCACAGCAA+CGG | 0.660652 | 8_1:+91172753 | Msa1225730:five_prime_UTR |
| AAGCAGCAGTTCGATCCCGA+GGG | 0.667947 | 8_1:-91176665 | None:intergenic |
| TGTTCTTAAGTCAAGACTCG+AGG | 0.677007 | 8_1:+91175760 | Msa1225730:CDS |
| ACATATCACCAGTAGCCAAG+TGG | 0.677362 | 8_1:-91174588 | None:intergenic |
| TCAGACATGAGATCAACAGA+AGG | 0.680744 | 8_1:-91172805 | None:intergenic |
| TCTTTCGCTTTAATACCAAG+AGG | 0.695667 | 8_1:-91174637 | None:intergenic |
| TCAACCCCAGAAACCTTGGG+AGG | 0.711556 | 8_1:-91175172 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTGTATAATTG+GGG | + | chr8_1:91173074-91173093 | Msa1225730:intron | 10.0% |
| !!! | ATATTAGATTATCTATTTTA+TGG | - | chr8_1:91174735-91174754 | None:intergenic | 10.0% |
| !!! | TTTTTTTTGTTTGAAATATT+GGG | + | chr8_1:91174929-91174948 | Msa1225730:intron | 10.0% |
| !! | TTAAAAAAAAACATAGACAA+TGG | - | chr8_1:91173037-91173056 | None:intergenic | 15.0% |
| !!! | ATTGTCTATGTTTTTTTTTA+AGG | + | chr8_1:91173036-91173055 | Msa1225730:intron | 15.0% |
| !! | AAATCAATTATAAAGAAAGA+AGG | - | chr8_1:91174085-91174104 | None:intergenic | 15.0% |
| !! | ATATTATACTACAAATATTC+AGG | + | chr8_1:91174751-91174770 | Msa1225730:intron | 15.0% |
| !! | TATTATACTACAAATATTCA+GGG | + | chr8_1:91174752-91174771 | Msa1225730:intron | 15.0% |
| !!! | GTTTTTTTTGTTTGAAATAT+TGG | + | chr8_1:91174928-91174947 | Msa1225730:intron | 15.0% |
| !!! | ATATTTTAAAAACTGATTGT+TGG | + | chr8_1:91176058-91176077 | Msa1225730:intron | 15.0% |
| !! | AAACACATAAATAAAAAGAA+AGG | - | chr8_1:91176466-91176485 | None:intergenic | 15.0% |
| !! | ATTTAAATAAAAGTAGAAAC+TGG | - | chr8_1:91176714-91176733 | None:intergenic | 15.0% |
| !! | AATCTTTACTCTAGATTAAA+AGG | - | chr8_1:91173229-91173248 | None:intergenic | 20.0% |
| !!! | TTTTAGTTAGATTTCAAACT+CGG | + | chr8_1:91173250-91173269 | Msa1225730:intron | 20.0% |
| !! | AAATTGAAGTCCTAAAAAAA+AGG | - | chr8_1:91173307-91173326 | None:intergenic | 20.0% |
| !!! | TACAATTACTGATTTTAGTT+AGG | + | chr8_1:91173353-91173372 | Msa1225730:intron | 20.0% |
| !! | ATTTATTTCAACTGATATGA+GGG | + | chr8_1:91174101-91174120 | Msa1225730:intron | 20.0% |
| !! | TTCCTATAATTTATCGTAAA+TGG | + | chr8_1:91174350-91174369 | Msa1225730:intron | 20.0% |
| !! | TCCTATAATTTATCGTAAAT+GGG | + | chr8_1:91174351-91174370 | Msa1225730:intron | 20.0% |
| !!! | ATACTGTTAAGGTATTTTAT+TGG | + | chr8_1:91175554-91175573 | Msa1225730:intron | 20.0% |
| !!! | TACTGTTAAGGTATTTTATT+GGG | + | chr8_1:91175555-91175574 | Msa1225730:intron | 20.0% |
| !!! | ATTGGGAAATTTATTTTGTT+TGG | + | chr8_1:91175572-91175591 | Msa1225730:intron | 20.0% |
| !!! | ATATCAATTTTTTCGTTTTC+AGG | + | chr8_1:91175694-91175713 | Msa1225730:intron | 20.0% |
| !! | AACATTAATTTCACTGAAAA+TGG | - | chr8_1:91175823-91175842 | None:intergenic | 20.0% |
| !! | GATCAACTTCATTTAATTAA+AGG | - | chr8_1:91176146-91176165 | None:intergenic | 20.0% |
| !! | TATATAAACTTTCAATCCAA+CGG | + | chr8_1:91176234-91176253 | Msa1225730:intron | 20.0% |
| !! | TATATAAACTTTCAATCCAA+CGG | + | chr8_1:91176234-91176253 | Msa1225730:intron | 20.0% |
| !!! | TATTGATTACTATTCGAAAA+AGG | + | chr8_1:91176552-91176571 | Msa1225730:CDS | 20.0% |
| !! | ATTGATTACTATTCGAAAAA+GGG | + | chr8_1:91176553-91176572 | Msa1225730:CDS | 20.0% |
| !!! | GTATTTTTATACTTTGCGTT+AGG | - | chr8_1:91172625-91172644 | None:intergenic | 25.0% |
| ! | TAAAAAAGAGAAAAGAGAAG+AGG | - | chr8_1:91172659-91172678 | None:intergenic | 25.0% |
| ! | TTTAGTTAGATTTCAAACTC+GGG | + | chr8_1:91173251-91173270 | Msa1225730:intron | 25.0% |
| ! | ACTAAAGTGAATTGTTCAAA+CGG | + | chr8_1:91173387-91173406 | Msa1225730:intron | 25.0% |
| ! | ATAATGCATTATGAATGTGT+TGG | + | chr8_1:91173449-91173468 | Msa1225730:intron | 25.0% |
| ! | TAATGCATTATGAATGTGTT+GGG | + | chr8_1:91173450-91173469 | Msa1225730:intron | 25.0% |
| !! | TTGTATGATTTTGTGTCTTT+TGG | + | chr8_1:91173658-91173677 | Msa1225730:intron | 25.0% |
| ! | AACAGAGATTCATACTAATA+AGG | - | chr8_1:91173747-91173766 | None:intergenic | 25.0% |
| !! | AGTAGAAAAAGGAGAATTTT+TGG | + | chr8_1:91173906-91173925 | Msa1225730:intron | 25.0% |
| !! | TGAAGTATTACTGTGAATAT+AGG | - | chr8_1:91174002-91174021 | None:intergenic | 25.0% |
| ! | AATACTTCAACCTTTCAATA+TGG | + | chr8_1:91174013-91174032 | Msa1225730:intron | 25.0% |
| ! | TGAAGCATACAAACAAAAAA+GGG | - | chr8_1:91174060-91174079 | None:intergenic | 25.0% |
| ! | ATGAAGCATACAAACAAAAA+AGG | - | chr8_1:91174061-91174080 | None:intergenic | 25.0% |
| ! | GATTTATTTCAACTGATATG+AGG | + | chr8_1:91174100-91174119 | Msa1225730:intron | 25.0% |
| ! | TCCCATTTACGATAAATTAT+AGG | - | chr8_1:91174355-91174374 | None:intergenic | 25.0% |
| ! | CATCATTTAGATAACATTCA+TGG | - | chr8_1:91174443-91174462 | None:intergenic | 25.0% |
| ! | ATATTCTACTTGGAAGAATA+TGG | - | chr8_1:91174486-91174505 | None:intergenic | 25.0% |
| !! | TGTTCAAGTTATATTCTACT+TGG | - | chr8_1:91174496-91174515 | None:intergenic | 25.0% |
| ! | ATCAAGCTGAAAAGATAAAA+AGG | - | chr8_1:91175017-91175036 | None:intergenic | 25.0% |
| ! | AATGAACTGAAAGTTATAAC+TGG | - | chr8_1:91175244-91175263 | None:intergenic | 25.0% |
| !! | CTTATCAGTTGATCATTTTA+GGG | - | chr8_1:91175361-91175380 | None:intergenic | 25.0% |
| !! | ACTTATCAGTTGATCATTTT+AGG | - | chr8_1:91175362-91175381 | None:intergenic | 25.0% |
| ! | AAATGATCAACTGATAAGTA+TGG | + | chr8_1:91175363-91175382 | Msa1225730:intron | 25.0% |
| !!! | GATAAGTATGGACTTTTTTA+CGG | + | chr8_1:91175375-91175394 | Msa1225730:intron | 25.0% |
| ! | TGTGCAAAAATATACTGTTA+AGG | + | chr8_1:91175543-91175562 | Msa1225730:intron | 25.0% |
| !!! | GGAAATTTATTTTGTTTGGA+GGG | + | chr8_1:91175576-91175595 | Msa1225730:intron | 25.0% |
| !! | AATTTCACTGAAAATGGATT+TGG | - | chr8_1:91175817-91175836 | None:intergenic | 25.0% |
| !!! | TTCGGGAAAGTTTTTTTTTT+TGG | + | chr8_1:91175865-91175884 | Msa1225730:intron | 25.0% |
| !!! | TCGGGAAAGTTTTTTTTTTT+GGG | + | chr8_1:91175866-91175885 | Msa1225730:intron | 25.0% |
| ! | AAAAAAATACCCTGTGTTTA+GGG | + | chr8_1:91175924-91175943 | Msa1225730:intron | 25.0% |
| !! | TAATTACGTGCAATTTTGAA+TGG | + | chr8_1:91175985-91176004 | Msa1225730:intron | 25.0% |
| !! | AATTACGTGCAATTTTGAAT+GGG | + | chr8_1:91175986-91176005 | Msa1225730:intron | 25.0% |
| ! | TCAGATTACGTAAAAACTTA+CGG | - | chr8_1:91176112-91176131 | None:intergenic | 25.0% |
| !! | GAATATAGACAAGAGTTTTA+GGG | - | chr8_1:91176340-91176359 | None:intergenic | 25.0% |
| !! | AGAATATAGACAAGAGTTTT+AGG | - | chr8_1:91176341-91176360 | None:intergenic | 25.0% |
| ! | AATCAATTTCCAATCAAACA+GGG | - | chr8_1:91176384-91176403 | None:intergenic | 25.0% |
| ! | AAATCAATTTCCAATCAAAC+AGG | - | chr8_1:91176385-91176404 | None:intergenic | 25.0% |
| ! | TTAATTCTCTACTCATCATT+TGG | + | chr8_1:91176404-91176423 | Msa1225730:intron | 25.0% |
| !! | ATTTTCTTTGTAAGTTGTCA+TGG | + | chr8_1:91176494-91176513 | Msa1225730:intron | 25.0% |
| !! | AATCTTAGTTTGAGAAAAAC+CGG | - | chr8_1:91176779-91176798 | None:intergenic | 25.0% |
| !! | GTTTTTCTCAAACTAAGATT+TGG | + | chr8_1:91176779-91176798 | Msa1225730:three_prime_UTR | 25.0% |
| !!! | CTTCAATTTTAGTATTACAC+AGG | + | chr8_1:91177006-91177025 | Msa1225730:three_prime_UTR | 25.0% |
| TTTATACTTTGCGTTAGGTT+GGG | - | chr8_1:91172620-91172639 | None:intergenic | 30.0% | |
| ! | TTTTATACTTTGCGTTAGGT+TGG | - | chr8_1:91172621-91172640 | None:intergenic | 30.0% |
| TAAGCAACAAACAGTAAGTT+CGG | - | chr8_1:91172964-91172983 | None:intergenic | 30.0% | |
| !!! | TATTTTTTGTCTTATCCCTC+CGG | + | chr8_1:91173185-91173204 | Msa1225730:intron | 30.0% |
| AACAGCATAAAAAATCGTTC+AGG | - | chr8_1:91173281-91173300 | None:intergenic | 30.0% | |
| !!! | TGCTGTTTTGCCTTTTTTTT+AGG | + | chr8_1:91173294-91173313 | Msa1225730:intron | 30.0% |
| ! | GGACTTCAATTTTTGATAGA+TGG | + | chr8_1:91173315-91173334 | Msa1225730:intron | 30.0% |
| !!! | CTGATTTTAGTTAGGAGTAA+TGG | + | chr8_1:91173361-91173380 | Msa1225730:intron | 30.0% |
| ACGGTCAATGAATTAATCAA+TGG | + | chr8_1:91173406-91173425 | Msa1225730:intron | 30.0% | |
| AGTAAAATTCCTTTGTCTGT+TGG | + | chr8_1:91173515-91173534 | Msa1225730:intron | 30.0% | |
| ! | TTTTGTCTGTGTACTATTAG+TGG | + | chr8_1:91173596-91173615 | Msa1225730:intron | 30.0% |
| ! | GTATTGTGATTTTCATAGAG+AGG | - | chr8_1:91173817-91173836 | None:intergenic | 30.0% |
| !!! | ACAATCACAGTTTTGCTATT+AGG | + | chr8_1:91173835-91173854 | Msa1225730:intron | 30.0% |
| !!! | CAATCACAGTTTTGCTATTA+GGG | + | chr8_1:91173836-91173855 | Msa1225730:intron | 30.0% |
| ! | GTTTTTCTATGGTAAACATG+CGG | - | chr8_1:91173961-91173980 | None:intergenic | 30.0% |
| ! | CTCACTAACAAGTTTTTCTA+TGG | - | chr8_1:91173972-91173991 | None:intergenic | 30.0% |
| !!! | TATTTCACATAGCGGATTTT+TGG | + | chr8_1:91174153-91174172 | Msa1225730:intron | 30.0% |
| ! | CATTTTACCGTAAAAAGGAA+GGG | - | chr8_1:91174400-91174419 | None:intergenic | 30.0% |
| AATATGGAGAATAACCTAAG+AGG | - | chr8_1:91174470-91174489 | None:intergenic | 30.0% | |
| !! | TAACTTGAACATTTTGATGC+AGG | + | chr8_1:91174505-91174524 | Msa1225730:intron | 30.0% |
| TATTAAAGCGAAAGAAGCTA+TGG | + | chr8_1:91174645-91174664 | Msa1225730:CDS | 30.0% | |
| TGCTATTCTTCTACTAACTA+TGG | + | chr8_1:91174986-91175005 | Msa1225730:intron | 30.0% | |
| AGCTGAAAAGATAAAAAGGA+AGG | - | chr8_1:91175013-91175032 | None:intergenic | 30.0% | |
| AATCATTCTTAGATCCAGTT+TGG | - | chr8_1:91175445-91175464 | None:intergenic | 30.0% | |
| !!! | GGGAAATTTATTTTGTTTGG+AGG | + | chr8_1:91175575-91175594 | Msa1225730:intron | 30.0% |
| TGTCAGTACTTTAGTTAAAG+TGG | + | chr8_1:91175619-91175638 | Msa1225730:intron | 30.0% | |
| !!! | TTTTTTCGTTTTCAGGTTAC+TGG | + | chr8_1:91175701-91175720 | Msa1225730:intron | 30.0% |
| ! | AAATGGATTTGGAATCATAC+CGG | - | chr8_1:91175806-91175825 | None:intergenic | 30.0% |
| CTTCAAATATACAGTAGCTT+CGG | + | chr8_1:91175847-91175866 | Msa1225730:intron | 30.0% | |
| TTCAAATATACAGTAGCTTC+GGG | + | chr8_1:91175848-91175867 | Msa1225730:intron | 30.0% | |
| !!! | TTTTTTTTGGGCATGTCAAT+TGG | + | chr8_1:91175878-91175897 | Msa1225730:intron | 30.0% |
| !!! | AAACACAGGGTATTTTTTTC+TGG | - | chr8_1:91175923-91175942 | None:intergenic | 30.0% |
| GAAAAAAATACCCTGTGTTT+AGG | + | chr8_1:91175923-91175942 | Msa1225730:intron | 30.0% | |
| ATGTATTTACCCTAAACACA+GGG | - | chr8_1:91175936-91175955 | None:intergenic | 30.0% | |
| TAGGGTAAATACATGTACTA+TGG | + | chr8_1:91175942-91175961 | Msa1225730:intron | 30.0% | |
| AGGGTAAATACATGTACTAT+GGG | + | chr8_1:91175943-91175962 | Msa1225730:intron | 30.0% | |
| AATACATGTACTATGGGTAT+TGG | + | chr8_1:91175949-91175968 | Msa1225730:intron | 30.0% | |
| ATACATGTACTATGGGTATT+GGG | + | chr8_1:91175950-91175969 | Msa1225730:intron | 30.0% | |
| CAAAATTGCACGTAATTACT+TGG | - | chr8_1:91175983-91176002 | None:intergenic | 30.0% | |
| TAGTATAAGCAGATATGTGT+GGG | - | chr8_1:91176016-91176035 | None:intergenic | 30.0% | |
| TTAGTATAAGCAGATATGTG+TGG | - | chr8_1:91176017-91176036 | None:intergenic | 30.0% | |
| GTGTGTGTAAAATTGAAACA+AGG | - | chr8_1:91176442-91176461 | None:intergenic | 30.0% | |
| !!! | GAACTGCTGCTTATTTTTTT+AGG | + | chr8_1:91176676-91176695 | Msa1225730:three_prime_UTR | 30.0% |
| ATTTGAAAACACCTGTGTAA+TGG | - | chr8_1:91176874-91176893 | None:intergenic | 30.0% | |
| AAAGAGAAAAGAGAAGAGGA+GGG | - | chr8_1:91172655-91172674 | None:intergenic | 35.0% | |
| AAAAGAGAAAAGAGAAGAGG+AGG | - | chr8_1:91172656-91172675 | None:intergenic | 35.0% | |
| AATAAGACGTTTGTCAGGTT+TGG | - | chr8_1:91172857-91172876 | None:intergenic | 35.0% | |
| ! | GAACTTACTGTTTGTTGCTT+AGG | + | chr8_1:91172963-91172982 | Msa1225730:intron | 35.0% |
| !! | GAATGTTGATGCGCTTTTTA+GGG | + | chr8_1:91172985-91173004 | Msa1225730:intron | 35.0% |
| AACATAGACAATGGACAACA+TGG | - | chr8_1:91173028-91173047 | None:intergenic | 35.0% | |
| AGACAAAACTACAGTTAGCA+AGG | - | chr8_1:91173584-91173603 | None:intergenic | 35.0% | |
| GCTAGTAAAAACTGGAATAG+TGG | - | chr8_1:91173871-91173890 | None:intergenic | 35.0% | |
| CTGTATCAGCTAGTAAAAAC+TGG | - | chr8_1:91173879-91173898 | None:intergenic | 35.0% | |
| ! | GTTTTTACTAGCTGATACAG+CGG | + | chr8_1:91173879-91173898 | Msa1225730:intron | 35.0% |
| ACCTTTCAATATGGAAGCTA+TGG | + | chr8_1:91174022-91174041 | Msa1225730:intron | 35.0% | |
| ACCATAGCTTCCATATTGAA+AGG | - | chr8_1:91174026-91174045 | None:intergenic | 35.0% | |
| CTATGTGAAATAGCAAATGG+TGG | - | chr8_1:91174145-91174164 | None:intergenic | 35.0% | |
| !! | CCATTTGCTATTTCACATAG+CGG | + | chr8_1:91174145-91174164 | Msa1225730:intron | 35.0% |
| CATATCAGTGTAATCAACAG+CGG | - | chr8_1:91174200-91174219 | None:intergenic | 35.0% | |
| TCTTGTGTTGTGACATAAAC+AGG | - | chr8_1:91174296-91174315 | None:intergenic | 35.0% | |
| ! | GTATTCACCCTTCCTTTTTA+CGG | + | chr8_1:91174390-91174409 | Msa1225730:intron | 35.0% |
| ! | CCATTTTACCGTAAAAAGGA+AGG | - | chr8_1:91174401-91174420 | None:intergenic | 35.0% |
| ! | CCTTCCTTTTTACGGTAAAA+TGG | + | chr8_1:91174398-91174417 | Msa1225730:intron | 35.0% |
| ! | TCCTTTTTACGGTAAAATGG+TGG | + | chr8_1:91174401-91174420 | Msa1225730:intron | 35.0% |
| ! | ACCACCATTTTACCGTAAAA+AGG | - | chr8_1:91174405-91174424 | None:intergenic | 35.0% |
| ATTCATGGACAAAAGAGAAC+AGG | - | chr8_1:91174428-91174447 | None:intergenic | 35.0% | |
| CTAAATGATGAGTTCCTCTT+AGG | + | chr8_1:91174453-91174472 | Msa1225730:intron | 35.0% | |
| CAGTACTCATCCTTAATGAT+TGG | - | chr8_1:91174562-91174581 | None:intergenic | 35.0% | |
| TTTCGCTTTAATACCAAGAG+GGG | - | chr8_1:91174638-91174657 | None:intergenic | 35.0% | |
| CTTTCGCTTTAATACCAAGA+GGG | - | chr8_1:91174639-91174658 | None:intergenic | 35.0% | |
| TCTTTCGCTTTAATACCAAG+AGG | - | chr8_1:91174640-91174659 | None:intergenic | 35.0% | |
| ! | TGGAAAAGGTAAGCTCTTTT+TGG | + | chr8_1:91174665-91174684 | Msa1225730:intron | 35.0% |
| ! | GAGTGAAACAATAAAAGCAC+AGG | - | chr8_1:91174703-91174722 | None:intergenic | 35.0% |
| !! | AGAACTTGTTTCTGATGACT+TGG | + | chr8_1:91174775-91174794 | Msa1225730:CDS | 35.0% |
| ATGAAACCTTTCTGACATGA+CGG | - | chr8_1:91174833-91174852 | None:intergenic | 35.0% | |
| CAGAAAGGTTTCATTCTTGA+TGG | + | chr8_1:91174839-91174858 | Msa1225730:CDS | 35.0% | |
| AGTAGTTCAGATGTCAAACA+AGG | - | chr8_1:91174902-91174921 | None:intergenic | 35.0% | |
| ! | ACTGGCAATTAACATTTTGC+AGG | - | chr8_1:91175226-91175245 | None:intergenic | 35.0% |
| !! | TCAGTTGATCATTTTAGGGA+GGG | - | chr8_1:91175357-91175376 | None:intergenic | 35.0% |
| !! | ATCAGTTGATCATTTTAGGG+AGG | - | chr8_1:91175358-91175377 | None:intergenic | 35.0% |
| TTCTTAGATCCAGTTTGGAT+AGG | - | chr8_1:91175440-91175459 | None:intergenic | 35.0% | |
| !! | TTATTTTGTTTGGAGGGAAC+TGG | + | chr8_1:91175582-91175601 | Msa1225730:intron | 35.0% |
| CCAAAGATAGCATTCAAATG+AGG | - | chr8_1:91175648-91175667 | None:intergenic | 35.0% | |
| CCTCATTTGAATGCTATCTT+TGG | + | chr8_1:91175645-91175664 | Msa1225730:intron | 35.0% | |
| TCAATTGGACCCAAATTCAT+TGG | + | chr8_1:91175893-91175912 | Msa1225730:intron | 35.0% | |
| CAATTGGACCCAAATTCATT+GGG | + | chr8_1:91175894-91175913 | Msa1225730:intron | 35.0% | |
| TCTGGATACCCAATGAATTT+GGG | - | chr8_1:91175905-91175924 | None:intergenic | 35.0% | |
| TTCTGGATACCCAATGAATT+TGG | - | chr8_1:91175906-91175925 | None:intergenic | 35.0% | |
| CATGTATTTACCCTAAACAC+AGG | - | chr8_1:91175937-91175956 | None:intergenic | 35.0% | |
| AGTATAAGCAGATATGTGTG+GGG | - | chr8_1:91176015-91176034 | None:intergenic | 35.0% | |
| ATCTTGATGCATCTCAATGA+CGG | + | chr8_1:91176163-91176182 | Msa1225730:intron | 35.0% | |
| ! | TTTTACACAATTGAGACCGT+TGG | - | chr8_1:91176253-91176272 | None:intergenic | 35.0% |
| !!! | ATAGACAAGAGTTTTAGGGA+TGG | - | chr8_1:91176336-91176355 | None:intergenic | 35.0% |
| TTGAAACAAGGCCAGAAATT+GGG | - | chr8_1:91176430-91176449 | None:intergenic | 35.0% | |
| ATTGAAACAAGGCCAGAAAT+TGG | - | chr8_1:91176431-91176450 | None:intergenic | 35.0% | |
| AATATGTGCAATGAACATGC+AGG | + | chr8_1:91176528-91176547 | Msa1225730:intron | 35.0% | |
| ATCTTGCACAAAAATGTAGC+AGG | - | chr8_1:91176924-91176943 | None:intergenic | 35.0% | |
| !! | TAGGTTGGGTTTTTCGGATT+CGG | - | chr8_1:91172606-91172625 | None:intergenic | 40.0% |
| !!! | TTGCGTTAGGTTGGGTTTTT+CGG | - | chr8_1:91172612-91172631 | None:intergenic | 40.0% |
| AAGAGAAGAGGAGGGTAATT+TGG | - | chr8_1:91172647-91172666 | None:intergenic | 40.0% | |
| TCAGACATGAGATCAACAGA+AGG | - | chr8_1:91172808-91172827 | None:intergenic | 40.0% | |
| ACGAGAATAAGACGTTTGTC+AGG | - | chr8_1:91172862-91172881 | None:intergenic | 40.0% | |
| ! | GACAAACGTCTTATTCTCGT+TGG | + | chr8_1:91172862-91172881 | Msa1225730:CDS | 40.0% |
| AGTAAGTTCGGATCTGAACA+AGG | - | chr8_1:91172952-91172971 | None:intergenic | 40.0% | |
| !! | GGAATGTTGATGCGCTTTTT+AGG | + | chr8_1:91172984-91173003 | Msa1225730:intron | 40.0% |
| ! | TTAAAAGGTTACTTTCCCCC+CGG | - | chr8_1:91173214-91173233 | None:intergenic | 40.0% |
| AGCACAAAACCAACAGACAA+AGG | - | chr8_1:91173527-91173546 | None:intergenic | 40.0% | |
| ! | CTATCACTATGTGCTGCTAT+TGG | - | chr8_1:91173772-91173791 | None:intergenic | 40.0% |
| CACATAGTGATAGAGCATAG+CGG | + | chr8_1:91173779-91173798 | Msa1225730:intron | 40.0% | |
| ACAGCGGCAATAGTAGAAAA+AGG | + | chr8_1:91173895-91173914 | Msa1225730:intron | 40.0% | |
| CCGCTATGTGAAATAGCAAA+TGG | - | chr8_1:91174148-91174167 | None:intergenic | 40.0% | |
| ! | CGCTGTTGATTACACTGATA+TGG | + | chr8_1:91174198-91174217 | Msa1225730:intron | 40.0% |
| ATCCTTAATGATTGGCGACT+GGG | - | chr8_1:91174554-91174573 | None:intergenic | 40.0% | |
| AGCGAAAGAAGCTATGGAAA+AGG | + | chr8_1:91174651-91174670 | Msa1225730:CDS | 40.0% | |
| !! | GTTTCTGATGACTTGGTTGT+TGG | + | chr8_1:91174782-91174801 | Msa1225730:CDS | 40.0% |
| AAGAAACCGTCATGTCAGAA+AGG | + | chr8_1:91174824-91174843 | Msa1225730:CDS | 40.0% | |
| ! | TGATGGTTTTCCAAGAACTG+TGG | + | chr8_1:91174856-91174875 | Msa1225730:CDS | 40.0% |
| !! | AATTGATGACGCAATCCTTG+AGG | + | chr8_1:91175087-91175106 | Msa1225730:CDS | 40.0% |
| AGGAGCAAACTTTGTATGGT+AGG | - | chr8_1:91175155-91175174 | None:intergenic | 40.0% | |
| TGTTCTTAAGTCAAGACTCG+AGG | + | chr8_1:91175760-91175779 | Msa1225730:CDS | 40.0% | |
| ATGGCAAAACAATTGACCGT+TGG | - | chr8_1:91176317-91176336 | None:intergenic | 40.0% | |
| TTCCAATCAAACAGGGAAGA+TGG | - | chr8_1:91176377-91176396 | None:intergenic | 40.0% | |
| TCATCATTTGGCCCAATTTC+TGG | + | chr8_1:91176416-91176435 | Msa1225730:intron | 40.0% | |
| CATTTGCAGCGAAGTTGAAA+GGG | - | chr8_1:91176756-91176775 | None:intergenic | 40.0% | |
| TGGTCAAGAGACAATCCATT+GGG | - | chr8_1:91176854-91176873 | None:intergenic | 40.0% | |
| ATGGTCAAGAGACAATCCAT+TGG | - | chr8_1:91176855-91176874 | None:intergenic | 40.0% | |
| TTGTCTCTTGACCATTACAC+AGG | + | chr8_1:91176860-91176879 | Msa1225730:three_prime_UTR | 40.0% | |
| !! | TTGGGTTTTTCGGATTCGGA+TGG | - | chr8_1:91172602-91172621 | None:intergenic | 45.0% |
| ! | GGTAATGGCGAGTTCTAACT+TGG | + | chr8_1:91172774-91172793 | Msa1225730:exon | 45.0% |
| AAGACGTTTGTCAGGTTTGG+AGG | - | chr8_1:91172854-91172873 | None:intergenic | 45.0% | |
| ! | TAAAAGGTTACTTTCCCCCC+GGG | - | chr8_1:91173213-91173232 | None:intergenic | 45.0% |
| ATGGTGGCACGAGAAAATAG+CGG | - | chr8_1:91174129-91174148 | None:intergenic | 45.0% | |
| ! | TACCTTTTCCAGATCCAGGT+GGG | - | chr8_1:91174531-91174550 | None:intergenic | 45.0% |
| TACCCAGTCGCCAATCATTA+AGG | + | chr8_1:91174549-91174568 | Msa1225730:CDS | 45.0% | |
| CATCCTTAATGATTGGCGAC+TGG | - | chr8_1:91174555-91174574 | None:intergenic | 45.0% | |
| ! | TGAGTACTGCTTATGCCACT+TGG | + | chr8_1:91174573-91174592 | Msa1225730:CDS | 45.0% |
| ACATATCACCAGTAGCCAAG+TGG | - | chr8_1:91174591-91174610 | None:intergenic | 45.0% | |
| AAGGCAATACCTTCTGTGCT+TGG | - | chr8_1:91174883-91174902 | None:intergenic | 45.0% | |
| TGATGAGATGCTGCAGAAAC+AGG | + | chr8_1:91175033-91175052 | Msa1225730:CDS | 45.0% | |
| GATGAGATGCTGCAGAAACA+GGG | + | chr8_1:91175034-91175053 | Msa1225730:CDS | 45.0% | |
| ATCCTTGAGGAGCGAATTAC+TGG | + | chr8_1:91175100-91175119 | Msa1225730:CDS | 45.0% | |
| TGGGAGGAGCAAACTTTGTA+TGG | - | chr8_1:91175159-91175178 | None:intergenic | 45.0% | |
| ! | TACAAAGTTTGCTCCTCCCA+AGG | + | chr8_1:91175159-91175178 | Msa1225730:CDS | 45.0% |
| TCATCAACCCCAGAAACCTT+GGG | - | chr8_1:91175178-91175197 | None:intergenic | 45.0% | |
| ATCATCAACCCCAGAAACCT+TGG | - | chr8_1:91175179-91175198 | None:intergenic | 45.0% | |
| !! | GTTGATCATTTTAGGGAGGG+AGG | - | chr8_1:91175354-91175373 | None:intergenic | 45.0% |
| !! | TGGATAGGCTTCTAGCTCAT+GGG | - | chr8_1:91175425-91175444 | None:intergenic | 45.0% |
| !! | TTGGATAGGCTTCTAGCTCA+TGG | - | chr8_1:91175426-91175445 | None:intergenic | 45.0% |
| AGCTAGAAGCCTATCCAAAC+TGG | + | chr8_1:91175428-91175447 | Msa1225730:intron | 45.0% | |
| !! | TTTTGTTTGGAGGGAACTGG+TGG | + | chr8_1:91175585-91175604 | Msa1225730:intron | 45.0% |
| GTTTCACAGGCAAACTGAAC+CGG | + | chr8_1:91175784-91175803 | Msa1225730:CDS | 45.0% | |
| !! | CTTTGGGAGGTTTTTCAGCA+TGG | - | chr8_1:91176594-91176613 | None:intergenic | 45.0% |
| TGCTGAAAAACCTCCCAAAG+AGG | + | chr8_1:91176594-91176613 | Msa1225730:CDS | 45.0% | |
| ACCTCAGATGTCACCTCTTT+GGG | - | chr8_1:91176610-91176629 | None:intergenic | 45.0% | |
| TGTCTCAATAGAGTTCCCCT+TGG | + | chr8_1:91176641-91176660 | Msa1225730:exon | 45.0% | |
| GCATTTGCAGCGAAGTTGAA+AGG | - | chr8_1:91176757-91176776 | None:intergenic | 45.0% | |
| TTCAACTTCGCTGCAAATGC+CGG | + | chr8_1:91176757-91176776 | Msa1225730:three_prime_UTR | 45.0% | |
| GAATGCAGCATGTTTCCCAA+TGG | + | chr8_1:91176836-91176855 | Msa1225730:three_prime_UTR | 45.0% | |
| !!! | TTTTTTTTTTTTTGTATAAT+TGG | + | chr8_1:91173072-91173091 | Msa1225730:intron | 5.0% |
| !!! | TTTTTTTTTTTTGTATAATT+GGG | + | chr8_1:91173073-91173092 | Msa1225730:intron | 5.0% |
| ! | GTACCTTTTCCAGATCCAGG+TGG | - | chr8_1:91174532-91174551 | None:intergenic | 50.0% |
| ! | TGGGTACCTTTTCCAGATCC+AGG | - | chr8_1:91174535-91174554 | None:intergenic | 50.0% |
| ! | TGCTTATGCCACTTGGCTAC+TGG | + | chr8_1:91174580-91174599 | Msa1225730:CDS | 50.0% |
| GTAGCAGCTAAAACCCCTCT+TGG | + | chr8_1:91174622-91174641 | Msa1225730:CDS | 50.0% | |
| TGTGCTTGGACCACAGTTCT+TGG | - | chr8_1:91174869-91174888 | None:intergenic | 50.0% | |
| AACTGTGGTCCAAGCACAGA+AGG | + | chr8_1:91174871-91174890 | Msa1225730:CDS | 50.0% | |
| GTCCAGTAATTCGCTCCTCA+AGG | - | chr8_1:91175105-91175124 | None:intergenic | 50.0% | |
| TGTATGGTAGGTTCTGCCAC+TGG | - | chr8_1:91175143-91175162 | None:intergenic | 50.0% | |
| TTTGCTCCTCCCAAGGTTTC+TGG | + | chr8_1:91175166-91175185 | Msa1225730:CDS | 50.0% | |
| TTGCTCCTCCCAAGGTTTCT+GGG | + | chr8_1:91175167-91175186 | Msa1225730:CDS | 50.0% | |
| CTAGCTCATGGGAACTTCAC+AGG | - | chr8_1:91175414-91175433 | None:intergenic | 50.0% | |
| TCATCCTTGCGCTGGATAAG+AGG | - | chr8_1:91175731-91175750 | None:intergenic | 50.0% | |
| CGCCATCTTCCCTGTTTGAT+TGG | + | chr8_1:91176372-91176391 | Msa1225730:intron | 50.0% | |
| TCAGATGTCACCTCTTTGGG+AGG | - | chr8_1:91176607-91176626 | None:intergenic | 50.0% | |
| TCCCAAAGAGGTGACATCTG+AGG | + | chr8_1:91176606-91176625 | Msa1225730:CDS | 50.0% | |
| GACCTCAGATGTCACCTCTT+TGG | - | chr8_1:91176611-91176630 | None:intergenic | 50.0% | |
| CTGTCACAGCAGCACAGCAA+CGG | + | chr8_1:91172753-91172772 | Msa1225730:five_prime_UTR | 55.0% | |
| CAGCAGCACAGCAACGGTAA+TGG | + | chr8_1:91172759-91172778 | Msa1225730:exon | 55.0% | |
| TGTCTTATCCCTCCGGTTCC+CGG | + | chr8_1:91173192-91173211 | Msa1225730:intron | 55.0% | |
| !! | CATTTTGATGCAGGCCCACC+TGG | + | chr8_1:91174514-91174533 | Msa1225730:intron | 55.0% |
| AGGAGCGAATTACTGGACGC+TGG | + | chr8_1:91175107-91175126 | Msa1225730:CDS | 55.0% | |
| GGTAGGTTCTGCCACTGGAT+GGG | - | chr8_1:91175138-91175157 | None:intergenic | 55.0% | |
| TGGTAGGTTCTGCCACTGGA+TGG | - | chr8_1:91175139-91175158 | None:intergenic | 55.0% | |
| TGCTCCTCCCAAGGTTTCTG+GGG | + | chr8_1:91175168-91175187 | Msa1225730:CDS | 55.0% | |
| TCAACCCCAGAAACCTTGGG+AGG | - | chr8_1:91175175-91175194 | None:intergenic | 55.0% | |
| TGAGCCTCTTATCCAGCGCA+AGG | + | chr8_1:91175724-91175743 | Msa1225730:CDS | 55.0% | |
| ! | CAAGACTCGAGGCGTTTCAC+AGG | + | chr8_1:91175771-91175790 | Msa1225730:CDS | 55.0% |
| TAGAGTTCCCCTTGGACCCT+CGG | + | chr8_1:91176649-91176668 | Msa1225730:exon | 55.0% | |
| AAGCAGCAGTTCGATCCCGA+GGG | - | chr8_1:91176668-91176687 | None:intergenic | 55.0% | |
| TAAGCAGCAGTTCGATCCCG+AGG | - | chr8_1:91176669-91176688 | None:intergenic | 55.0% | |
| GTCTTATCCCTCCGGTTCCC+GGG | + | chr8_1:91173193-91173212 | Msa1225730:intron | 60.0% | |
| TCTTATCCCTCCGGTTCCCG+GGG | + | chr8_1:91173194-91173213 | Msa1225730:intron | 60.0% | |
| ! | GTTACTTTCCCCCCGGGAAC+CGG | - | chr8_1:91173207-91173226 | None:intergenic | 60.0% |
| GGCCCACCTGGATCTGGAAA+AGG | + | chr8_1:91174526-91174545 | Msa1225730:intron | 60.0% | |
| CGCTGGATACACCCATCCAG+TGG | + | chr8_1:91175124-91175143 | Msa1225730:CDS | 60.0% | |
| CTGCAGTGTCATCCTTGCGC+TGG | - | chr8_1:91175739-91175758 | None:intergenic | 60.0% | |
| AGAGTTCCCCTTGGACCCTC+GGG | + | chr8_1:91176650-91176669 | Msa1225730:exon | 60.0% | |
| TTCGATCCCGAGGGTCCAAG+GGG | - | chr8_1:91176659-91176678 | None:intergenic | 60.0% | |
| GTTCGATCCCGAGGGTCCAA+GGG | - | chr8_1:91176660-91176679 | None:intergenic | 60.0% | |
| AGTTCGATCCCGAGGGTCCA+AGG | - | chr8_1:91176661-91176680 | None:intergenic | 60.0% | |
| CTTATCCCTCCGGTTCCCGG+GGG | + | chr8_1:91173195-91173214 | Msa1225730:intron | 65.0% | |
| TTATCCCTCCGGTTCCCGGG+GGG | + | chr8_1:91173196-91173215 | Msa1225730:intron | 65.0% | |
| GATGCAGGCCCACCTGGATC+TGG | + | chr8_1:91174520-91174539 | Msa1225730:intron | 65.0% | |
| CTTTCCCCCCGGGAACCGGA+GGG | - | chr8_1:91173203-91173222 | None:intergenic | 70.0% | |
| ACTTTCCCCCCGGGAACCGG+AGG | - | chr8_1:91173204-91173223 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 91172554 | 91177037 | 91172554 | ID=Msa1225730;Name=Msa1225730 |
| chr8_1 | mRNA | 91172554 | 91177037 | 91172554 | ID=Msa1225730-mRNA-1;Parent=Msa1225730;Name=Msa1225730-mRNA-1;_AED=0.06;_eAED=0.06;_QI=224|1|1|1|1|1|6|386|243 |
| chr8_1 | exon | 91172554 | 91172883 | 91172554 | ID=Msa1225730-mRNA-1:exon:33240;Parent=Msa1225730-mRNA-1 |
| chr8_1 | exon | 91174527 | 91174672 | 91174527 | ID=Msa1225730-mRNA-1:exon:33241;Parent=Msa1225730-mRNA-1 |
| chr8_1 | exon | 91174773 | 91174892 | 91174773 | ID=Msa1225730-mRNA-1:exon:33242;Parent=Msa1225730-mRNA-1 |
| chr8_1 | exon | 91175031 | 91175198 | 91175031 | ID=Msa1225730-mRNA-1:exon:33243;Parent=Msa1225730-mRNA-1 |
| chr8_1 | exon | 91175716 | 91175805 | 91175716 | ID=Msa1225730-mRNA-1:exon:33244;Parent=Msa1225730-mRNA-1 |
| chr8_1 | exon | 91176550 | 91177037 | 91176550 | ID=Msa1225730-mRNA-1:exon:33245;Parent=Msa1225730-mRNA-1 |
| chr8_1 | five_prime_UTR | 91172554 | 91172777 | 91172554 | ID=Msa1225730-mRNA-1:five_prime_utr;Parent=Msa1225730-mRNA-1 |
| chr8_1 | CDS | 91172778 | 91172883 | 91172778 | ID=Msa1225730-mRNA-1:cds;Parent=Msa1225730-mRNA-1 |
| chr8_1 | CDS | 91174527 | 91174672 | 91174527 | ID=Msa1225730-mRNA-1:cds;Parent=Msa1225730-mRNA-1 |
| chr8_1 | CDS | 91174773 | 91174892 | 91174773 | ID=Msa1225730-mRNA-1:cds;Parent=Msa1225730-mRNA-1 |
| chr8_1 | CDS | 91175031 | 91175198 | 91175031 | ID=Msa1225730-mRNA-1:cds;Parent=Msa1225730-mRNA-1 |
| chr8_1 | CDS | 91175716 | 91175805 | 91175716 | ID=Msa1225730-mRNA-1:cds;Parent=Msa1225730-mRNA-1 |
| chr8_1 | CDS | 91176550 | 91176651 | 91176550 | ID=Msa1225730-mRNA-1:cds;Parent=Msa1225730-mRNA-1 |
| chr8_1 | three_prime_UTR | 91176652 | 91177037 | 91176652 | ID=Msa1225730-mRNA-1:three_prime_utr;Parent=Msa1225730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
