Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104330 | EOY21722.1 | 67.568 | 185 | 21 | 1 | 1 | 146 | 1 | 185 | 3.65e-83 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104330 | sp|Q5GI04|HIR1_CAPAN | 90.805 | 87 | 8 | 0 | 60 | 146 | 162 | 248 | 1.35e-48 | 160 |
| Msa0104330 | sp|Q5GI04|HIR1_CAPAN | 52.525 | 99 | 41 | 1 | 1 | 93 | 1 | 99 | 4.88e-32 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104330 | A0A061FXZ6 | 67.568 | 185 | 21 | 1 | 1 | 146 | 1 | 185 | 1.74e-83 | 253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0104330 | Msa0178960 | 0.821807 | 3.316947e-53 | -8.615850e-47 |
| Msa0104330 | Msa0204320 | 0.832576 | 8.734993e-56 | -8.615850e-47 |
| Msa0104330 | Msa0258760 | 0.800656 | 1.301329e-48 | -8.615850e-47 |
| Msa0104330 | Msa0424320 | 0.802536 | 5.355694e-49 | -8.615850e-47 |
| Msa0104330 | Msa0562440 | 0.801127 | 1.042419e-48 | -8.615850e-47 |
| Msa0104330 | Msa0877250 | 0.804587 | 2.011245e-49 | -8.615850e-47 |
| Msa0104330 | Msa0892340 | 0.863452 | 2.464302e-64 | -8.615850e-47 |
| Msa0104330 | Msa0987120 | 0.862619 | 4.456470e-64 | -8.615850e-47 |
| Msa0104330 | Msa1014540 | 0.811773 | 5.918928e-51 | -8.615850e-47 |
| Msa0104330 | Msa1244250 | 0.812093 | 5.042036e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104330 | MtrunA17_Chr6g0452801 | 73.394 | 109 | 27 | 2 | 40 | 146 | 140 | 248 | 5.91e-47 | 153 |
| Msa0104330 | MtrunA17_Chr6g0452801 | 63.014 | 73 | 27 | 0 | 1 | 73 | 1 | 73 | 4.34e-28 | 104 |
| Msa0104330 | MtrunA17_Chr4g0060171 | 85.057 | 87 | 13 | 0 | 60 | 146 | 171 | 257 | 1.15e-46 | 153 |
| Msa0104330 | MtrunA17_Chr4g0060171 | 87.302 | 63 | 8 | 0 | 1 | 63 | 1 | 63 | 7.58e-39 | 133 |
| Msa0104330 | MtrunA17_Chr8g0362631 | 75.556 | 90 | 22 | 0 | 57 | 146 | 159 | 248 | 1.40e-42 | 142 |
| Msa0104330 | MtrunA17_Chr8g0362631 | 66.667 | 63 | 21 | 0 | 1 | 63 | 1 | 63 | 6.59e-29 | 107 |
| Msa0104330 | MtrunA17_Chr4g0060111 | 88.506 | 87 | 10 | 0 | 60 | 146 | 162 | 248 | 7.78e-41 | 137 |
| Msa0104330 | MtrunA17_Chr4g0060111 | 80.822 | 73 | 14 | 0 | 1 | 73 | 1 | 73 | 4.03e-40 | 136 |
| Msa0104330 | MtrunA17_Chr4g0060151 | 88.506 | 87 | 10 | 0 | 60 | 146 | 162 | 248 | 7.78e-41 | 137 |
| Msa0104330 | MtrunA17_Chr4g0060151 | 80.822 | 73 | 14 | 0 | 1 | 73 | 1 | 73 | 4.03e-40 | 136 |
| Msa0104330 | MtrunA17_Chr4g0060091 | 80.822 | 73 | 14 | 0 | 1 | 73 | 6 | 78 | 6.94e-40 | 135 |
| Msa0104330 | MtrunA17_Chr4g0060091 | 85.057 | 87 | 13 | 0 | 60 | 146 | 167 | 253 | 1.89e-39 | 134 |
| Msa0104330 | MtrunA17_Chr4g0060101 | 79.452 | 73 | 15 | 0 | 1 | 73 | 1 | 73 | 2.22e-39 | 134 |
| Msa0104330 | MtrunA17_Chr4g0060101 | 83.908 | 87 | 14 | 0 | 60 | 146 | 162 | 248 | 8.58e-39 | 132 |
| Msa0104330 | MtrunA17_Chr6g0476481 | 54.023 | 87 | 40 | 0 | 60 | 146 | 164 | 250 | 2.39e-28 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0104330 | AT5G62740.1 | 87.356 | 87 | 11 | 0 | 60 | 146 | 162 | 248 | 2.95e-48 | 157 |
| Msa0104330 | AT5G62740.1 | 49.573 | 117 | 50 | 2 | 1 | 116 | 1 | 109 | 5.06e-31 | 112 |
| Msa0104330 | AT3G01290.1 | 68.807 | 109 | 27 | 1 | 45 | 146 | 140 | 248 | 3.71e-45 | 149 |
| Msa0104330 | AT3G01290.1 | 65.079 | 63 | 22 | 0 | 1 | 63 | 1 | 63 | 1.13e-24 | 96.3 |
| Msa0104330 | AT1G69840.1 | 77.011 | 87 | 20 | 0 | 60 | 146 | 162 | 248 | 1.39e-34 | 122 |
| Msa0104330 | AT1G69840.1 | 66.667 | 63 | 21 | 0 | 1 | 63 | 1 | 63 | 1.65e-29 | 108 |
| Msa0104330 | AT1G69840.2 | 77.011 | 87 | 20 | 0 | 60 | 146 | 162 | 248 | 1.39e-34 | 122 |
| Msa0104330 | AT1G69840.2 | 66.667 | 63 | 21 | 0 | 1 | 63 | 1 | 63 | 1.65e-29 | 108 |
| Msa0104330 | AT1G69840.5 | 77.011 | 87 | 20 | 0 | 60 | 146 | 162 | 248 | 1.39e-34 | 122 |
| Msa0104330 | AT1G69840.5 | 66.667 | 63 | 21 | 0 | 1 | 63 | 1 | 63 | 1.65e-29 | 108 |
| Msa0104330 | AT1G69840.7 | 77.011 | 87 | 20 | 0 | 60 | 146 | 162 | 248 | 1.39e-34 | 122 |
| Msa0104330 | AT1G69840.7 | 66.667 | 63 | 21 | 0 | 1 | 63 | 1 | 63 | 1.65e-29 | 108 |
| Msa0104330 | AT1G69840.4 | 77.011 | 87 | 20 | 0 | 60 | 146 | 162 | 248 | 1.39e-34 | 122 |
| Msa0104330 | AT1G69840.4 | 66.667 | 63 | 21 | 0 | 1 | 63 | 1 | 63 | 1.65e-29 | 108 |
| Msa0104330 | AT1G69840.6 | 77.011 | 87 | 20 | 0 | 60 | 146 | 162 | 248 | 1.39e-34 | 122 |
| Msa0104330 | AT1G69840.6 | 66.667 | 63 | 21 | 0 | 1 | 63 | 1 | 63 | 1.65e-29 | 108 |
| Msa0104330 | AT1G69840.3 | 77.011 | 87 | 20 | 0 | 60 | 146 | 162 | 248 | 1.39e-34 | 122 |
| Msa0104330 | AT1G69840.3 | 66.667 | 63 | 21 | 0 | 1 | 63 | 1 | 63 | 1.65e-29 | 108 |
| Msa0104330 | AT5G51570.1 | 46.774 | 124 | 60 | 1 | 23 | 146 | 133 | 250 | 4.84e-32 | 115 |
Find 36 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGCATGCCTTGGTTTCT+TGG | 0.201444 | 1_3:+11967868 | Msa0104330:CDS |
| CACTCTTCGGCTACAACAAT+TGG | 0.343058 | 1_3:+11967912 | Msa0104330:CDS |
| CGGGATGCCATTGCATGCCT+TGG | 0.374346 | 1_3:+11967860 | Msa0104330:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.384185 | 1_3:+11970792 | Msa0104330:CDS |
| GTGGCTATGAGAGAAGGTTT+TGG | 0.398028 | 1_3:+11967814 | Msa0104330:CDS |
| GTCTAAATATCTCTCTGGGC+TGG | 0.425139 | 1_3:+11970687 | Msa0104330:CDS |
| TTTCTTGGAAAACAAATTGT+TGG | 0.434020 | 1_3:+11967883 | Msa0104330:CDS |
| GCTGAGTCTAAATATCTCTC+TGG | 0.451469 | 1_3:+11970682 | Msa0104330:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 1_3:+11967840 | Msa0104330:CDS |
| GGTTTGAGAGACAGTGTGAT+TGG | 0.463698 | 1_3:+11970742 | Msa0104330:CDS |
| TCTAAATATCTCTCTGGGCT+GGG | 0.486024 | 1_3:+11970688 | Msa0104330:CDS |
| TTGTTGGTCATCTCACTCTT+CGG | 0.489229 | 1_3:+11967899 | Msa0104330:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 1_3:+11967841 | Msa0104330:CDS |
| TGTGATCAGCTGCAAGATTG+AGG | 0.516144 | 1_3:+11970596 | Msa0104330:intron |
| CAGCGTCAAGCCATTGTGGA+TGG | 0.520226 | 1_3:+11970721 | Msa0104330:CDS |
| TGTGAGACCAAGACAAAGGT+TGG | 0.530281 | 1_3:+11967943 | Msa0104330:CDS |
| CAAGGCATGCAATGGCATCC+CGG | 0.531695 | 1_3:-11967859 | None:intergenic |
| TAACAAACCAACCTTTGTCT+TGG | 0.535367 | 1_3:-11967950 | None:intergenic |
| TTTAGACTCAGCCTCACCCT+TGG | 0.538415 | 1_3:-11970671 | None:intergenic |
| TCAATACTTTGACACTATGA+AGG | 0.541468 | 1_3:+11970825 | Msa0104330:CDS |
| GTGATCAGCTGCAAGATTGA+GGG | 0.554251 | 1_3:+11970597 | Msa0104330:intron |
| GACGACTGCAAAAGATGTCA+TGG | 0.572197 | 1_3:+11970786 | Msa0104330:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.573023 | 1_3:+11970683 | Msa0104330:CDS |
| CAAGAAACCAAGGCATGCAA+TGG | 0.584637 | 1_3:-11967867 | None:intergenic |
| CTTGCAAATTAAGCGAGCCA+AGG | 0.590552 | 1_3:+11970654 | Msa0104330:CDS |
| CATCCACAATGGCTTGACGC+TGG | 0.591027 | 1_3:-11970720 | None:intergenic |
| TCTCAAGTGGCTATGAGAGA+AGG | 0.594736 | 1_3:+11967808 | Msa0104330:CDS |
| AATTAAGCGAGCCAAGGGTG+AGG | 0.606515 | 1_3:+11970660 | Msa0104330:CDS |
| TTGCAAATTAAGCGAGCCAA+GGG | 0.606707 | 1_3:+11970655 | Msa0104330:CDS |
| GAGGGTGGCAGCGAATGAGA+AGG | 0.631840 | 1_3:+11970615 | Msa0104330:CDS |
| TCGCCAGCGTCAAGCCATTG+TGG | 0.633446 | 1_3:+11970717 | Msa0104330:CDS |
| GCAAGTTGATCAATCTCAAG+TGG | 0.635084 | 1_3:+11967795 | Msa0104330:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.650717 | 1_3:+11967939 | Msa0104330:CDS |
| GTCTCTCAAACCATCCACAA+TGG | 0.664898 | 1_3:-11970731 | None:intergenic |
| ATCAGCTGCAAGATTGAGGG+TGG | 0.703805 | 1_3:+11970600 | Msa0104330:intron |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 1_3:-11970816 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCCATTAATTTTATAATT+TGG | + | chr1_3:11968686-11968705 | Msa0104330:intron | 10.0% |
| !! | AAACCAAATTATAAAATTAA+TGG | - | chr1_3:11968692-11968711 | None:intergenic | 10.0% |
| !! | AAAATAAGTATAAGAAAATA+TGG | - | chr1_3:11970571-11970590 | None:intergenic | 10.0% |
| !!! | AAAGAAAGTATTTATGTTAT+TGG | - | chr1_3:11968024-11968043 | None:intergenic | 15.0% |
| !!! | AAAAATGTGTAAAGAATTTT+CGG | + | chr1_3:11968523-11968542 | Msa0104330:intron | 15.0% |
| !! | ATAACCTTTATAAATGATAA+CGG | - | chr1_3:11968572-11968591 | None:intergenic | 15.0% |
| !! | TTAAGTACTATAAAGAATAT+AGG | + | chr1_3:11969824-11969843 | Msa0104330:intron | 15.0% |
| !!! | TAAATACTTTCTTTTTAGCT+AGG | + | chr1_3:11968030-11968049 | Msa0104330:intron | 20.0% |
| !!! | TTTAGCTAGGATATTTTTTT+AGG | + | chr1_3:11968043-11968062 | Msa0104330:intron | 20.0% |
| !! | CTTATATGTTTGCTTAAATA+TGG | + | chr1_3:11968095-11968114 | Msa0104330:intron | 20.0% |
| !! | TACATATGAAATATTGAAAG+TGG | - | chr1_3:11968146-11968165 | None:intergenic | 20.0% |
| !! | TTCAATGATATAAGAATAAC+AGG | - | chr1_3:11968809-11968828 | None:intergenic | 20.0% |
| !! | TTGTTCACATGATATTTAAT+GGG | + | chr1_3:11969002-11969021 | Msa0104330:intron | 20.0% |
| !!! | ATATTTTATTCTATCTTGCA+TGG | + | chr1_3:11969080-11969099 | Msa0104330:intron | 20.0% |
| !!! | TATTTTATTCTATCTTGCAT+GGG | + | chr1_3:11969081-11969100 | Msa0104330:intron | 20.0% |
| !! | TTATTAACACATGAATTCAT+TGG | - | chr1_3:11969674-11969693 | None:intergenic | 20.0% |
| !! | TAATCAAAATCTTAGTATGA+AGG | + | chr1_3:11969902-11969921 | Msa0104330:intron | 20.0% |
| !! | TTTCATTGCACAAATTATTT+AGG | + | chr1_3:11970339-11970358 | Msa0104330:intron | 20.0% |
| !! | TTATACTTCATACAATATCT+AGG | - | chr1_3:11970463-11970482 | None:intergenic | 20.0% |
| !!! | ATGTTTCTACATAGATATAA+TGG | - | chr1_3:11970936-11970955 | None:intergenic | 20.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | + | chr1_3:11967828-11967847 | Msa0104330:CDS | 25.0% |
| ! | TTTCTTGGAAAACAAATTGT+TGG | + | chr1_3:11967883-11967902 | Msa0104330:CDS | 25.0% |
| ! | ATTTATGTTATTGGTAAGCA+TGG | - | chr1_3:11968015-11968034 | None:intergenic | 25.0% |
| ! | TGACATACATTAGATACTAA+AGG | - | chr1_3:11968453-11968472 | None:intergenic | 25.0% |
| ! | TGTTCCGTTATCATTTATAA+AGG | + | chr1_3:11968565-11968584 | Msa0104330:intron | 25.0% |
| ! | CTTGTTCACATGATATTTAA+TGG | + | chr1_3:11969001-11969020 | Msa0104330:intron | 25.0% |
| ! | ATAACAACCAAATAACTTAC+AGG | - | chr1_3:11969502-11969521 | None:intergenic | 25.0% |
| !!! | GCAAAATTTCTAGTTTTAGT+AGG | - | chr1_3:11969793-11969812 | None:intergenic | 25.0% |
| !!! | AAATTTTGACAACCTGATTA+TGG | + | chr1_3:11969851-11969870 | Msa0104330:intron | 25.0% |
| !!! | GATTTTGATTAGTTGATTGT+TGG | - | chr1_3:11969893-11969912 | None:intergenic | 25.0% |
| ! | TCATATAGAAACAATGTTGT+GGG | - | chr1_3:11970109-11970128 | None:intergenic | 25.0% |
| ! | TTCATATAGAAACAATGTTG+TGG | - | chr1_3:11970110-11970129 | None:intergenic | 25.0% |
| ! | TGTGCAATGAAAATAGATTT+AGG | - | chr1_3:11970331-11970350 | None:intergenic | 25.0% |
| ! | TATACTTATGCAAATTGCTA+AGG | - | chr1_3:11970866-11970885 | None:intergenic | 25.0% |
| ! | ATTTGCATAAGTATATGACT+TGG | + | chr1_3:11970871-11970890 | Msa0104330:intron | 25.0% |
| !! | GTGGATATAATATGAAGTTT+TGG | + | chr1_3:11970901-11970920 | Msa0104330:intron | 25.0% |
| !!! | TTTTTTTGCTGTTGTATTGA+AGG | + | chr1_3:11971044-11971063 | Msa0104330:intron | 25.0% |
| !! | ATTTGTTTTCCAAGAAACCA+AGG | - | chr1_3:11967880-11967899 | None:intergenic | 30.0% |
| !!! | TATTTTTTTAGGTGTCATCC+TGG | + | chr1_3:11968054-11968073 | Msa0104330:intron | 30.0% |
| AATCAAAATAACATAGCACC+AGG | - | chr1_3:11968075-11968094 | None:intergenic | 30.0% | |
| !! | GAACACTGATTACATTTTGA+AGG | + | chr1_3:11968302-11968321 | Msa0104330:intron | 30.0% |
| !!! | GATTACATTTTGAAGGTACT+TGG | + | chr1_3:11968309-11968328 | Msa0104330:intron | 30.0% |
| GTATGTTCAGATACAATAGT+TGG | + | chr1_3:11968339-11968358 | Msa0104330:intron | 30.0% | |
| GAAACATAACTTTACCCAAA+GGG | - | chr1_3:11968497-11968516 | None:intergenic | 30.0% | |
| AGAAACATAACTTTACCCAA+AGG | - | chr1_3:11968498-11968517 | None:intergenic | 30.0% | |
| ! | ATCCTACATATGAGTCTTAT+GGG | + | chr1_3:11968948-11968967 | Msa0104330:intron | 30.0% |
| CTCTTTGCTTGTAAAATACT+GGG | - | chr1_3:11969060-11969079 | None:intergenic | 30.0% | |
| TCTCTTTGCTTGTAAAATAC+TGG | - | chr1_3:11969061-11969080 | None:intergenic | 30.0% | |
| TGTTATAGAGGCTCTTATAT+GGG | + | chr1_3:11969144-11969163 | Msa0104330:intron | 30.0% | |
| ACAAAAAGCAATGACATAGA+AGG | - | chr1_3:11969262-11969281 | None:intergenic | 30.0% | |
| ! | AAATGGCATTAGGTCTTTTT+GGG | + | chr1_3:11969332-11969351 | Msa0104330:intron | 30.0% |
| AACATTTCTCTAACAAGATG+TGG | - | chr1_3:11969470-11969489 | None:intergenic | 30.0% | |
| !! | ATGGATGAAGGTGTTATATT+TGG | + | chr1_3:11969624-11969643 | Msa0104330:intron | 30.0% |
| CATGTGTTAATAAACTGTCA+AGG | + | chr1_3:11969681-11969700 | Msa0104330:intron | 30.0% | |
| ATAAAGCACAAAAGACAATC+AGG | - | chr1_3:11969752-11969771 | None:intergenic | 30.0% | |
| CATATAGAAACAATGTTGTG+GGG | - | chr1_3:11970108-11970127 | None:intergenic | 30.0% | |
| TACATGTATGACGAACTATA+AGG | - | chr1_3:11970252-11970271 | None:intergenic | 30.0% | |
| ACATGTACGTAAAACTATTG+AGG | + | chr1_3:11970265-11970284 | Msa0104330:intron | 30.0% | |
| ACAAATTATTTAGGTCCCTT+TGG | + | chr1_3:11970348-11970367 | Msa0104330:intron | 30.0% | |
| AAGAAGCAAAACAAACCAAA+GGG | - | chr1_3:11970366-11970385 | None:intergenic | 30.0% | |
| AAAGAAGCAAAACAAACCAA+AGG | - | chr1_3:11970367-11970386 | None:intergenic | 30.0% | |
| !!! | TTGGTTTGTTTTGCTTCTTT+AGG | + | chr1_3:11970367-11970386 | Msa0104330:intron | 30.0% |
| !!! | TGGTTTGTTTTGCTTCTTTA+GGG | + | chr1_3:11970368-11970387 | Msa0104330:intron | 30.0% |
| ATCATAGCATGATTGTCTAT+TGG | - | chr1_3:11970395-11970414 | None:intergenic | 30.0% | |
| TAGACAATCATGCTATGATA+TGG | + | chr1_3:11970396-11970415 | Msa0104330:intron | 30.0% | |
| TATGGCAATTCATGAACAAA+GGG | - | chr1_3:11970553-11970572 | None:intergenic | 30.0% | |
| ATATGGCAATTCATGAACAA+AGG | - | chr1_3:11970554-11970573 | None:intergenic | 30.0% | |
| !! | GTTTTTCAGTTAATGTACCA+GGG | + | chr1_3:11970764-11970783 | Msa0104330:CDS | 30.0% |
| TCAATACTTTGACACTATGA+AGG | + | chr1_3:11970825-11970844 | Msa0104330:CDS | 30.0% | |
| !! | TATATGACTTGGTCATATTG+TGG | + | chr1_3:11970882-11970901 | Msa0104330:intron | 30.0% |
| !!! | TTGTTTTGCTGTTGTATTGA+AGG | + | chr1_3:11970997-11971016 | Msa0104330:intron | 30.0% |
| TAACAAACCAACCTTTGTCT+TGG | - | chr1_3:11967953-11967972 | None:intergenic | 35.0% | |
| CATGGAATGACATGAAGATT+TGG | - | chr1_3:11967997-11968016 | None:intergenic | 35.0% | |
| ATCTCTTTCACTATTGTGTC+AGG | + | chr1_3:11968120-11968139 | Msa0104330:intron | 35.0% | |
| GTCTCCTAATGATGTCTAAT+GGG | + | chr1_3:11968229-11968248 | Msa0104330:intron | 35.0% | |
| GTTTCCCATTAGACATCATT+AGG | - | chr1_3:11968236-11968255 | None:intergenic | 35.0% | |
| TGGGAAACTATTAACTCTAC+AGG | + | chr1_3:11968248-11968267 | Msa0104330:intron | 35.0% | |
| CTGTTGTAACTCTCTTTCTT+TGG | - | chr1_3:11968395-11968414 | None:intergenic | 35.0% | |
| CAAAGAAAGAGAGTTACAAC+AGG | + | chr1_3:11968393-11968412 | Msa0104330:intron | 35.0% | |
| ! | TGTGTAAAGAATTTTCGGTG+AGG | + | chr1_3:11968528-11968547 | Msa0104330:intron | 35.0% |
| GAATATTGACACACAGTTTG+TGG | + | chr1_3:11968603-11968622 | Msa0104330:intron | 35.0% | |
| AATCCAACAAAAGCAACCTA+GGG | - | chr1_3:11968893-11968912 | None:intergenic | 35.0% | |
| GTACAATATTCCTGCGAATA+AGG | + | chr1_3:11968921-11968940 | Msa0104330:intron | 35.0% | |
| CATCCTACATATGAGTCTTA+TGG | + | chr1_3:11968947-11968966 | Msa0104330:intron | 35.0% | |
| AGAATAGAGCAGAGAGATAA+AGG | - | chr1_3:11968976-11968995 | None:intergenic | 35.0% | |
| TATCTCTCTGCTCTATTCTT+TGG | + | chr1_3:11968977-11968996 | Msa0104330:intron | 35.0% | |
| ATCTCTCTGCTCTATTCTTT+GGG | + | chr1_3:11968978-11968997 | Msa0104330:intron | 35.0% | |
| CTATAACAGAGTAAGGTACA+CGG | - | chr1_3:11969132-11969151 | None:intergenic | 35.0% | |
| TGTACCTTACTCTGTTATAG+AGG | + | chr1_3:11969132-11969151 | Msa0104330:intron | 35.0% | |
| CTGTTATAGAGGCTCTTATA+TGG | + | chr1_3:11969143-11969162 | Msa0104330:intron | 35.0% | |
| GCTGTTGTATATTACAGTGT+TGG | + | chr1_3:11969169-11969188 | Msa0104330:intron | 35.0% | |
| ! | ACTTTTTGTAGTGCACCAAA+TGG | + | chr1_3:11969315-11969334 | Msa0104330:intron | 35.0% |
| CAAAAAGACCTAATGCCATT+TGG | - | chr1_3:11969333-11969352 | None:intergenic | 35.0% | |
| ! | CAAATGGCATTAGGTCTTTT+TGG | + | chr1_3:11969331-11969350 | Msa0104330:intron | 35.0% |
| !!! | ATTAGGTCTTTTTGGGATGA+TGG | + | chr1_3:11969339-11969358 | Msa0104330:intron | 35.0% |
| ATGGTTCTTGCCAATACATT+TGG | + | chr1_3:11969379-11969398 | Msa0104330:intron | 35.0% | |
| !! | ACTGCTGATTATTTTCTTGC+TGG | + | chr1_3:11969411-11969430 | Msa0104330:intron | 35.0% |
| !! | CTGCTGATTATTTTCTTGCT+GGG | + | chr1_3:11969412-11969431 | Msa0104330:intron | 35.0% |
| GGAGGATTTATTGTACCTAA+AGG | + | chr1_3:11969433-11969452 | Msa0104330:intron | 35.0% | |
| CAGCATTCCTGTAAGTTATT+TGG | + | chr1_3:11969492-11969511 | Msa0104330:intron | 35.0% | |
| ATGAATTTACTGCTTCCAGA+TGG | + | chr1_3:11969605-11969624 | Msa0104330:intron | 35.0% | |
| ATATAACACCTTCATCCATC+TGG | - | chr1_3:11969623-11969642 | None:intergenic | 35.0% | |
| TGGCAGAAAATTAAGCAGTT+AGG | - | chr1_3:11969654-11969673 | None:intergenic | 35.0% | |
| ACAAAAGACAATCAGGAGTA+AGG | - | chr1_3:11969745-11969764 | None:intergenic | 35.0% | |
| TTTATGCGTGGTCAAAACTT+AGG | + | chr1_3:11969767-11969786 | Msa0104330:intron | 35.0% | |
| TCAATGAAGTCTCCATAATC+AGG | - | chr1_3:11969866-11969885 | None:intergenic | 35.0% | |
| TGTCTGCATAAATCAGCAAT+TGG | + | chr1_3:11969995-11970014 | Msa0104330:intron | 35.0% | |
| GTCTGCATAAATCAGCAATT+GGG | + | chr1_3:11969996-11970015 | Msa0104330:intron | 35.0% | |
| !! | ATCTACCAGTTGATGATTAC+TGG | + | chr1_3:11970056-11970075 | Msa0104330:intron | 35.0% |
| ACTTACCAGTAATCATCAAC+TGG | - | chr1_3:11970064-11970083 | None:intergenic | 35.0% | |
| ATTTATCTTACTCCCAAGAG+AGG | + | chr1_3:11970165-11970184 | Msa0104330:intron | 35.0% | |
| CGAACTATAAGGAAGGAAAA+GGG | - | chr1_3:11970241-11970260 | None:intergenic | 35.0% | |
| ACGAACTATAAGGAAGGAAA+AGG | - | chr1_3:11970242-11970261 | None:intergenic | 35.0% | |
| TGTATGACGAACTATAAGGA+AGG | - | chr1_3:11970248-11970267 | None:intergenic | 35.0% | |
| GATATTTGGCATATAGCACT+CGG | - | chr1_3:11970530-11970549 | None:intergenic | 35.0% | |
| TCATGAACAAAGGGGATATT+TGG | - | chr1_3:11970544-11970563 | None:intergenic | 35.0% | |
| ATGGCAATTCATGAACAAAG+GGG | - | chr1_3:11970552-11970571 | None:intergenic | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | + | chr1_3:11970683-11970702 | Msa0104330:CDS | 35.0% | |
| !! | GGTTTTTCAGTTAATGTACC+AGG | + | chr1_3:11970763-11970782 | Msa0104330:CDS | 35.0% |
| TGCAAAAGATGTCATGGATA+TGG | + | chr1_3:11970792-11970811 | Msa0104330:CDS | 35.0% | |
| !! | TGTCAAAGTATTGAGTGACA+AGG | - | chr1_3:11970819-11970838 | None:intergenic | 35.0% |
| CTTATGCAAATTGCTAAGGT+AGG | - | chr1_3:11970862-11970881 | None:intergenic | 35.0% | |
| !! | GCAAGTTGATCAATCTCAAG+TGG | + | chr1_3:11967795-11967814 | Msa0104330:CDS | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | + | chr1_3:11967840-11967859 | Msa0104330:CDS | 40.0% |
| TTGTTGGTCATCTCACTCTT+CGG | + | chr1_3:11967899-11967918 | Msa0104330:CDS | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | + | chr1_3:11967939-11967958 | Msa0104330:CDS | 40.0% | |
| GGTCTCCTAATGATGTCTAA+TGG | + | chr1_3:11968228-11968247 | Msa0104330:intron | 40.0% | |
| !! | TAGTTGGTAACGAAATGACC+AGG | + | chr1_3:11968355-11968374 | Msa0104330:intron | 40.0% |
| !! | AGTTGGTAACGAAATGACCA+GGG | + | chr1_3:11968356-11968375 | Msa0104330:intron | 40.0% |
| TCTAATGTATGTCACTGTCC+CGG | + | chr1_3:11968459-11968478 | Msa0104330:intron | 40.0% | |
| ! | AAAGGGAAAGAAAGTGTACC+GGG | - | chr1_3:11968480-11968499 | None:intergenic | 40.0% |
| ! | CAAAGGGAAAGAAAGTGTAC+CGG | - | chr1_3:11968481-11968500 | None:intergenic | 40.0% |
| GGTACACTTTCTTTCCCTTT+GGG | + | chr1_3:11968480-11968499 | Msa0104330:intron | 40.0% | |
| TATTTGATCATGTTGCCCCT+AGG | + | chr1_3:11968874-11968893 | Msa0104330:intron | 40.0% | |
| ATCCAACAAAAGCAACCTAG+GGG | - | chr1_3:11968892-11968911 | None:intergenic | 40.0% | |
| GAATCCAACAAAAGCAACCT+AGG | - | chr1_3:11968894-11968913 | None:intergenic | 40.0% | |
| CTCCCATAAGACTCATATGT+AGG | - | chr1_3:11968953-11968972 | None:intergenic | 40.0% | |
| TATTCTATCTTGCATGGGCA+TGG | + | chr1_3:11969086-11969105 | Msa0104330:intron | 40.0% | |
| AGAGCCTCTATAACAGAGTA+AGG | - | chr1_3:11969139-11969158 | None:intergenic | 40.0% | |
| AAAGATACCTTCCTGCTACA+GGG | - | chr1_3:11969201-11969220 | None:intergenic | 40.0% | |
| TAAAGATACCTTCCTGCTAC+AGG | - | chr1_3:11969202-11969221 | None:intergenic | 40.0% | |
| TGTAGCTGAGCCAAATGTAT+TGG | - | chr1_3:11969392-11969411 | None:intergenic | 40.0% | |
| ! | CTGATTATTTTCTTGCTGGG+AGG | + | chr1_3:11969415-11969434 | Msa0104330:intron | 40.0% |
| TGTAATTGCACGTTGTCCAT+AGG | - | chr1_3:11969581-11969600 | None:intergenic | 40.0% | |
| ! | TGTCTTTTGTGCTTTATGCG+TGG | + | chr1_3:11969755-11969774 | Msa0104330:intron | 40.0% |
| ! | CTGGTAGATTGTTTGAAACG+AGG | - | chr1_3:11970045-11970064 | None:intergenic | 40.0% |
| AACACTTCTTGACCTCTCTT+GGG | - | chr1_3:11970180-11970199 | None:intergenic | 40.0% | |
| AAACACTTCTTGACCTCTCT+TGG | - | chr1_3:11970181-11970200 | None:intergenic | 40.0% | |
| CTATAAGGAAGGAAAAGGGT+AGG | - | chr1_3:11970237-11970256 | None:intergenic | 40.0% | |
| TTGCAAATTAAGCGAGCCAA+GGG | + | chr1_3:11970655-11970674 | Msa0104330:CDS | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | + | chr1_3:11970682-11970701 | Msa0104330:CDS | 40.0% | |
| TCTAAATATCTCTCTGGGCT+GGG | + | chr1_3:11970688-11970707 | Msa0104330:CDS | 40.0% | |
| TCTCAAGTGGCTATGAGAGA+AGG | + | chr1_3:11967808-11967827 | Msa0104330:CDS | 45.0% | |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | + | chr1_3:11967814-11967833 | Msa0104330:CDS | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | + | chr1_3:11967841-11967860 | Msa0104330:CDS | 45.0% |
| CAAGAAACCAAGGCATGCAA+TGG | - | chr1_3:11967870-11967889 | None:intergenic | 45.0% | |
| CATTGCATGCCTTGGTTTCT+TGG | + | chr1_3:11967868-11967887 | Msa0104330:CDS | 45.0% | |
| CACTCTTCGGCTACAACAAT+TGG | + | chr1_3:11967912-11967931 | Msa0104330:CDS | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | + | chr1_3:11967943-11967962 | Msa0104330:CDS | 45.0% | |
| ATTGATCCCCCTGTATATGC+AGG | + | chr1_3:11968205-11968224 | Msa0104330:intron | 45.0% | |
| TTGATCCCCCTGTATATGCA+GGG | + | chr1_3:11968206-11968225 | Msa0104330:intron | 45.0% | |
| !! | GTTGGTAACGAAATGACCAG+GGG | + | chr1_3:11968357-11968376 | Msa0104330:intron | 45.0% |
| CGGTACACTTTCTTTCCCTT+TGG | + | chr1_3:11968479-11968498 | Msa0104330:intron | 45.0% | |
| TAGGATGCAACCTTATTCGC+AGG | - | chr1_3:11968934-11968953 | None:intergenic | 45.0% | |
| AGCTTCCTCTGATGATATCG+CGG | + | chr1_3:11969032-11969051 | Msa0104330:intron | 45.0% | |
| AAGATACCTTCCTGCTACAG+GGG | - | chr1_3:11969200-11969219 | None:intergenic | 45.0% | |
| GTAGTGCACCAAATGGCATT+AGG | + | chr1_3:11969322-11969341 | Msa0104330:intron | 45.0% | |
| ! | GGATGATGGCTTCTATTGCA+CGG | + | chr1_3:11969353-11969372 | Msa0104330:intron | 45.0% |
| ! | GATGATGGCTTCTATTGCAC+GGG | + | chr1_3:11969354-11969373 | Msa0104330:intron | 45.0% |
| GTGGATCTGTGCTTACCTTT+AGG | - | chr1_3:11969451-11969470 | None:intergenic | 45.0% | |
| CACGGCTTGATCATTTCTGA+AGG | - | chr1_3:11969526-11969545 | None:intergenic | 45.0% | |
| CTTCAGAAATGATCAAGCCG+TGG | + | chr1_3:11969524-11969543 | Msa0104330:intron | 45.0% | |
| TGCACGTTGTCCATAGGTAA+GGG | - | chr1_3:11969575-11969594 | None:intergenic | 45.0% | |
| TTGCACGTTGTCCATAGGTA+AGG | - | chr1_3:11969576-11969595 | None:intergenic | 45.0% | |
| TACTGCTTCCAGATGGATGA+AGG | + | chr1_3:11969612-11969631 | Msa0104330:intron | 45.0% | |
| GCAATTGGGAACAACACAGT+AGG | + | chr1_3:11970010-11970029 | Msa0104330:intron | 45.0% | |
| AATGTTGTGGGGACATCTCA+CGG | - | chr1_3:11970097-11970116 | None:intergenic | 45.0% | |
| TAGCACTCGGTAGAGAAACA+TGG | - | chr1_3:11970517-11970536 | None:intergenic | 45.0% | |
| TGTGATCAGCTGCAAGATTG+AGG | + | chr1_3:11970596-11970615 | Msa0104330:intron | 45.0% | |
| GTGATCAGCTGCAAGATTGA+GGG | + | chr1_3:11970597-11970616 | Msa0104330:intron | 45.0% | |
| CTTGCAAATTAAGCGAGCCA+AGG | + | chr1_3:11970654-11970673 | Msa0104330:CDS | 45.0% | |
| GTCTAAATATCTCTCTGGGC+TGG | + | chr1_3:11970687-11970706 | Msa0104330:CDS | 45.0% | |
| GTCTCTCAAACCATCCACAA+TGG | - | chr1_3:11970734-11970753 | None:intergenic | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+TGG | + | chr1_3:11970742-11970761 | Msa0104330:CDS | 45.0% | |
| GACGACTGCAAAAGATGTCA+TGG | + | chr1_3:11970786-11970805 | Msa0104330:CDS | 45.0% | |
| TGATCCCCCTGTATATGCAG+GGG | + | chr1_3:11968207-11968226 | Msa0104330:intron | 50.0% | |
| AGGAGACCCCTGCATATACA+GGG | - | chr1_3:11968216-11968235 | None:intergenic | 50.0% | |
| TAGGAGACCCCTGCATATAC+AGG | - | chr1_3:11968217-11968236 | None:intergenic | 50.0% | |
| ACTCTACAGGCATCCTCTGT+TGG | + | chr1_3:11968261-11968280 | Msa0104330:intron | 50.0% | |
| CTCTACAGGCATCCTCTGTT+GGG | + | chr1_3:11968262-11968281 | Msa0104330:intron | 50.0% | |
| TCTACAGGCATCCTCTGTTG+GGG | + | chr1_3:11968263-11968282 | Msa0104330:intron | 50.0% | |
| !! | GTGCTTTTTACCCCCAACAG+AGG | - | chr1_3:11968277-11968296 | None:intergenic | 50.0% |
| AACTCTCTTTCTTTGGCCCC+CGG | - | chr1_3:11968388-11968407 | None:intergenic | 50.0% | |
| !!! | TGCCCCTAGGTTGCTTTTGT+TGG | + | chr1_3:11968887-11968906 | Msa0104330:intron | 50.0% |
| ! | GGGCATGGTCTTTTACCAGT+TGG | + | chr1_3:11969101-11969120 | Msa0104330:intron | 50.0% |
| AGGTACACGGAGAATCCAAC+TGG | - | chr1_3:11969119-11969138 | None:intergenic | 50.0% | |
| GGCTTCTATTGCACGGGATA+TGG | + | chr1_3:11969360-11969379 | Msa0104330:intron | 50.0% | |
| CAGAAATGATCAAGCCGTGG+TGG | + | chr1_3:11969527-11969546 | Msa0104330:intron | 50.0% | |
| !! | TGATCAAGCCGTGGTGGATA+TGG | + | chr1_3:11969533-11969552 | Msa0104330:intron | 50.0% |
| !! | GATCAAGCCGTGGTGGATAT+GGG | + | chr1_3:11969534-11969553 | Msa0104330:intron | 50.0% |
| !! | ATCAAGCCGTGGTGGATATG+GGG | + | chr1_3:11969535-11969554 | Msa0104330:intron | 50.0% |
| TGGTTGTCACCCCTTACCTA+TGG | + | chr1_3:11969562-11969581 | Msa0104330:intron | 50.0% | |
| GCACGTTGTCCATAGGTAAG+GGG | - | chr1_3:11969574-11969593 | None:intergenic | 50.0% | |
| ATCAGCTGCAAGATTGAGGG+TGG | + | chr1_3:11970600-11970619 | Msa0104330:intron | 50.0% | |
| AATTAAGCGAGCCAAGGGTG+AGG | + | chr1_3:11970660-11970679 | Msa0104330:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+TGG | - | chr1_3:11970674-11970693 | None:intergenic | 50.0% | |
| ! | ACATCTTTTGCAGTCGTCCC+TGG | - | chr1_3:11970784-11970803 | None:intergenic | 50.0% |
| CAAGGCATGCAATGGCATCC+CGG | - | chr1_3:11967862-11967881 | None:intergenic | 55.0% | |
| GAGACCCCTGCATATACAGG+GGG | - | chr1_3:11968214-11968233 | None:intergenic | 55.0% | |
| GGAGACCCCTGCATATACAG+GGG | - | chr1_3:11968215-11968234 | None:intergenic | 55.0% | |
| CTACAGGCATCCTCTGTTGG+GGG | + | chr1_3:11968264-11968283 | Msa0104330:intron | 55.0% | |
| GAAATGACCAGGGGAGTCTC+CGG | + | chr1_3:11968366-11968385 | Msa0104330:intron | 55.0% | |
| AAATGACCAGGGGAGTCTCC+GGG | + | chr1_3:11968367-11968386 | Msa0104330:intron | 55.0% | |
| GTTGGATTTGCCCCTGTAGC+AGG | + | chr1_3:11969187-11969206 | Msa0104330:intron | 55.0% | |
| GATTTGCCCCTGTAGCAGGA+AGG | + | chr1_3:11969191-11969210 | Msa0104330:intron | 55.0% | |
| CAGTAGCCCCATATCCACCA+CGG | - | chr1_3:11969544-11969563 | None:intergenic | 55.0% | |
| CATCCACAATGGCTTGACGC+TGG | - | chr1_3:11970723-11970742 | None:intergenic | 55.0% | |
| CAGCGTCAAGCCATTGTGGA+TGG | + | chr1_3:11970721-11970740 | Msa0104330:CDS | 55.0% | |
| CGGGATGCCATTGCATGCCT+TGG | + | chr1_3:11967860-11967879 | Msa0104330:CDS | 60.0% | |
| AATGACCAGGGGAGTCTCCG+GGG | + | chr1_3:11968368-11968387 | Msa0104330:intron | 60.0% | |
| GGGAGCCGCGATATCATCAG+AGG | - | chr1_3:11969040-11969059 | None:intergenic | 60.0% | |
| !! | CGTGGTGGATATGGGGCTAC+TGG | + | chr1_3:11969542-11969561 | Msa0104330:intron | 60.0% |
| GAGGGTGGCAGCGAATGAGA+AGG | + | chr1_3:11970615-11970634 | Msa0104330:CDS | 60.0% | |
| TCGCCAGCGTCAAGCCATTG+TGG | + | chr1_3:11970717-11970736 | Msa0104330:CDS | 60.0% | |
| ATGACCAGGGGAGTCTCCGG+GGG | + | chr1_3:11968369-11968388 | Msa0104330:intron | 65.0% | |
| TTGGCCCCCGGAGACTCCCC+TGG | - | chr1_3:11968376-11968395 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 11967772 | 11971077 | 11967772 | ID=Msa0104330;Name=Msa0104330 |
| chr1_3 | mRNA | 11967772 | 11971077 | 11967772 | ID=Msa0104330-mRNA-1;Parent=Msa0104330;Name=Msa0104330-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.66|1|1|3|0|148 |
| chr1_3 | exon | 11967772 | 11967964 | 11967772 | ID=Msa0104330-mRNA-1:exon:4872;Parent=Msa0104330-mRNA-1 |
| chr1_3 | exon | 11970605 | 11970846 | 11970605 | ID=Msa0104330-mRNA-1:exon:4873;Parent=Msa0104330-mRNA-1 |
| chr1_3 | exon | 11971066 | 11971077 | 11971066 | ID=Msa0104330-mRNA-1:exon:4874;Parent=Msa0104330-mRNA-1 |
| chr1_3 | CDS | 11967772 | 11967964 | 11967772 | ID=Msa0104330-mRNA-1:cds;Parent=Msa0104330-mRNA-1 |
| chr1_3 | CDS | 11970605 | 11970846 | 11970605 | ID=Msa0104330-mRNA-1:cds;Parent=Msa0104330-mRNA-1 |
| chr1_3 | CDS | 11971066 | 11971077 | 11971066 | ID=Msa0104330-mRNA-1:cds;Parent=Msa0104330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
