AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0110400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0110400 MtrunA17_Chr1g0168391 94.689 546 4 1 1 546 1 521 0.0 1060
Msa0110400 MtrunA17_Chr3g0093681 25.902 305 180 10 239 536 287 552 1.12e-20 95.5
Msa0110400 MtrunA17_Chr1g0172501 25.987 304 181 10 239 536 287 552 2.55e-20 94.7
Msa0110400 MtrunA17_Chr5g0405851 31.500 200 123 8 342 536 259 449 9.03e-18 86.3
Msa0110400 MtrunA17_Chr5g0405851 24.723 271 174 10 264 528 152 398 1.66e-11 66.6
Msa0110400 MtrunA17_Chr1g0185501 23.193 332 220 7 211 538 14 314 2.24e-17 83.2
Msa0110400 MtrunA17_Chr2g0281451 26.667 195 114 4 259 452 51 217 4.04e-15 79.0
Msa0110400 MtrunA17_Chr2g0281451 26.733 202 134 7 339 536 61 252 1.57e-12 70.5
Msa0110400 MtrunA17_Chr2g0281451 23.350 197 123 2 250 446 84 252 2.10e-11 67.0
Msa0110400 MtrunA17_Chr6g0448921 24.898 245 153 5 235 478 28 242 1.59e-14 76.6
Msa0110400 MtrunA17_Chr6g0448921 21.586 227 150 2 226 452 61 259 1.64e-11 67.0
Msa0110400 MtrunA17_Chr6g0448921 24.227 194 134 5 347 536 28 212 1.88e-11 67.0
Msa0110400 MtrunA17_Chr4g0067151 25.214 234 142 5 224 452 78 283 6.63e-14 73.2
Msa0110400 MtrunA17_Chr4g0067151 22.744 277 147 6 261 536 22 232 3.54e-12 67.8
Msa0110400 MtrunA17_Chr4g0053651 25.379 264 166 8 220 457 286 544 1.19e-12 70.5
Msa0110400 MtrunA17_Chr8g0392701 24.028 283 180 10 169 448 12 262 1.82e-12 68.6
Msa0110400 MtrunA17_Chr5g0401661 23.077 260 176 5 221 457 393 651 8.00e-12 68.2
Msa0110400 MtrunA17_Chr3g0138311 25.472 212 127 4 238 448 635 816 5.26e-11 65.5
Msa0110400 MtrunA17_Chr5g0401671 22.835 254 172 5 227 457 309 561 5.61e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0110400 AT2G33340.2 70.772 544 126 5 1 542 1 513 0.0 797
Msa0110400 AT2G33340.1 70.772 544 126 5 1 542 1 513 0.0 797
Msa0110400 AT1G04510.2 70.000 550 131 5 1 547 1 519 0.0 787
Msa0110400 AT1G04510.1 69.818 550 132 5 1 547 1 519 0.0 786
Msa0110400 AT2G33340.3 70.760 513 117 5 1 511 1 482 0.0 746
Msa0110400 AT2G41500.1 25.478 314 192 10 238 546 269 545 1.42e-23 105
Msa0110400 AT2G41500.2 25.478 314 192 10 238 546 269 545 1.42e-23 105
Msa0110400 AT5G23430.3 22.776 281 178 9 259 536 9 253 1.44e-14 77.4
Msa0110400 AT5G23430.2 22.776 281 178 9 259 536 9 253 1.44e-14 77.4
Msa0110400 AT5G23430.1 22.776 281 178 9 259 536 9 253 1.50e-14 77.4
Msa0110400 AT5G08390.1 23.158 285 172 11 259 536 9 253 1.65e-14 77.4
Msa0110400 AT5G08390.1 23.744 219 138 4 235 452 28 218 3.34e-13 73.2
Msa0110400 AT5G56130.1 24.540 326 162 11 264 537 18 311 6.72e-14 73.2
Msa0110400 AT5G67320.1 24.242 264 169 8 220 457 321 579 1.83e-13 73.6
Msa0110400 AT3G49660.1 26.201 229 134 7 231 452 76 276 2.59e-13 71.6
Msa0110400 AT5G25150.1 23.333 330 186 10 167 448 305 615 4.31e-13 72.4
Msa0110400 AT5G25150.2 27.727 220 125 6 254 448 405 615 5.29e-13 72.4
Msa0110400 AT1G11160.3 21.596 213 156 6 328 536 5 210 6.08e-13 72.4
Msa0110400 AT1G11160.3 22.843 197 124 2 250 446 42 210 7.11e-11 65.9
Msa0110400 AT1G61210.3 22.170 212 155 6 326 536 50 252 6.19e-13 72.4
Msa0110400 AT1G61210.3 25.258 194 132 5 347 536 27 211 9.59e-11 65.5
Msa0110400 AT1G61210.1 22.170 212 155 6 326 536 50 252 7.40e-13 72.0
Msa0110400 AT1G61210.2 22.170 212 155 6 326 536 50 252 7.72e-13 72.0
Msa0110400 AT1G18080.1 24.545 220 140 4 231 448 68 263 2.32e-12 68.9
Msa0110400 AT1G11160.1 21.608 199 148 5 339 536 61 252 4.76e-12 69.3
Msa0110400 AT1G11160.1 22.843 197 124 2 250 446 84 252 8.72e-11 65.5
Msa0110400 AT1G11160.4 21.608 199 148 5 339 536 61 252 4.85e-12 69.3
Msa0110400 AT1G11160.4 22.843 197 124 2 250 446 84 252 8.59e-11 65.5
Msa0110400 AT1G11160.2 21.608 199 148 5 339 536 61 252 5.01e-12 69.3
Msa0110400 AT1G11160.2 22.843 197 124 2 250 446 84 252 8.64e-11 65.5
Msa0110400 AT5G13480.4 25.455 220 139 7 258 457 103 317 2.42e-11 67.0
Msa0110400 AT5G13480.1 25.455 220 139 7 258 457 115 329 2.56e-11 67.0
Msa0110400 AT5G13480.3 25.455 220 139 7 258 457 103 317 2.69e-11 66.6
Msa0110400 AT5G13480.2 25.455 220 139 7 258 457 126 340 2.82e-11 66.6

Find 132 sgRNAs with CRISPR-Local

Find 704 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAATCGAATAGGATTT+TGG 0.110325 1_3:+23238802 Msa0110400:intron
GACTGCAATGCTGCTCTTTC+CGG 0.154596 1_3:+23242037 Msa0110400:CDS
GCATTAGCTGTCACAGAATT+TGG 0.171506 1_3:-23241734 None:intergenic
GACCGGAATCTTCGAATATT+TGG 0.195869 1_3:+23246550 Msa0110400:CDS
ACAGAATTTGGAGTAGAAAT+AGG 0.203246 1_3:-23241722 None:intergenic
TGGTTGACGAAGAAGAAATT+AGG 0.243745 1_3:-23236406 None:intergenic
CGAAGAAGAAATTAGGGTTT+TGG 0.243929 1_3:-23236399 None:intergenic
CATCCCGATGGTCTTATTCT+TGG 0.266936 1_3:+23245279 Msa0110400:CDS
AAAACTCTTCCTGATTTATC+TGG 0.271266 1_3:+23246349 Msa0110400:CDS
GTGCAGGCAGCAAGCATTCC+TGG 0.291861 1_3:+23239053 Msa0110400:CDS
TCTTGATATCCTTCATTCTA+AGG 0.302903 1_3:+23242350 Msa0110400:CDS
TTTGGGAAGTGTCCAGTTAC+AGG 0.305772 1_3:+23238820 Msa0110400:CDS
CGTGATTGCAAGGCTTAAAA+AGG 0.320139 1_3:+23241652 Msa0110400:CDS
TTTGACACCACAGGCTCATC+TGG 0.321677 1_3:-23236566 None:intergenic
GGATCCTACCTTGCAGTTGC+AGG 0.322521 1_3:+23245858 Msa0110400:CDS
ATTTCAGATTCCTGCGACTT+TGG 0.324712 1_3:+23242248 Msa0110400:intron
CAGATTCTCTTGTTAAGATC+TGG 0.328133 1_3:+23245313 Msa0110400:CDS
GTTGGAGTTGCTGAGTCATA+TGG 0.342835 1_3:-23245712 None:intergenic
CAGTTGCAGGCTCTGATGTT+AGG 0.348094 1_3:+23245871 Msa0110400:CDS
CTTGGTCTAATTTCATTTGT+TGG 0.349584 1_3:+23246661 Msa0110400:three_prime_UTR
GCAAATGTTGCTAAGTTTGA+TGG 0.357923 1_3:+23245451 Msa0110400:CDS
CTCCATAGTCTTGCCGATCC+AGG 0.359004 1_3:+23246614 Msa0110400:three_prime_UTR
GGAATGCTTGCTGCCTGCAC+TGG 0.360377 1_3:-23239050 None:intergenic
CTCATGATGGTGTAAAGCTT+TGG 0.362749 1_3:+23245653 Msa0110400:CDS
TCCCTGGATCGGCAAGACTA+TGG 0.362761 1_3:-23246616 None:intergenic
TTTGTGACTGCATCACTTGA+TGG 0.370664 1_3:+23244941 Msa0110400:CDS
TGCAGTCACAAAGTAATTAT+TGG 0.371362 1_3:-23244930 None:intergenic
CTTGCTGCCTGCACTGGTCT+AGG 0.374275 1_3:-23239044 None:intergenic
ACTGCAATGCTGCTCTTTCC+GGG 0.374696 1_3:+23242038 Msa0110400:CDS
TGTTTATCCTACTTGTAATT+CGG 0.383478 1_3:+23243331 Msa0110400:CDS
GGATGTAATTTCTTCGCATT+AGG 0.388848 1_3:-23241980 None:intergenic
ACTCAGCGGTCACTCTAAAA+AGG 0.394859 1_3:+23242623 Msa0110400:CDS
AAGCGTGAAGTTTGTAGGTC+AGG 0.396085 1_3:+23242729 Msa0110400:CDS
CTTAAACAAAACTAGCAAAC+AGG 0.402528 1_3:+23242317 Msa0110400:CDS
CTTCCTGATTTATCTGGAAC+AGG 0.403899 1_3:+23246355 Msa0110400:CDS
CAGGGTGAATCTATCATAAC+TGG 0.405085 1_3:+23242748 Msa0110400:CDS
GGCCAAATATTCGAAGATTC+CGG 0.405806 1_3:-23246552 None:intergenic
GTAGTGTACTGGTGATAATA+TGG 0.407193 1_3:+23246957 Msa0110400:three_prime_UTR
AAATCCACATGTGTAAAATT+CGG 0.407717 1_3:+23246493 Msa0110400:CDS
GATATTGTGCCGATCAAAAC+AGG 0.410359 1_3:+23238862 Msa0110400:CDS
GTAAGCGGCTCTCCTGTAAC+TGG 0.411774 1_3:-23238832 None:intergenic
TCATGATGGTGTAAAGCTTT+GGG 0.421276 1_3:+23245654 Msa0110400:CDS
CTGCTTGCCGCGTGATTGCA+AGG 0.421314 1_3:+23241642 Msa0110400:CDS
TATTGCAGACAGTTCGTTTG+TGG 0.428520 1_3:+23243195 Msa0110400:intron
CTTCGAATATTTGGCCAACC+TGG 0.429124 1_3:+23246559 Msa0110400:CDS
ATTAATCGAGAGGCATATAA+TGG 0.430404 1_3:+23236616 Msa0110400:CDS
CATAACTGGTTCAGCAGATA+AGG 0.431703 1_3:+23242762 Msa0110400:CDS
GGTTGACGAAGAAGAAATTA+GGG 0.432978 1_3:-23236405 None:intergenic
TGTTAGCTCAGAAATTATAC+TGG 0.433157 1_3:-23242014 None:intergenic
ATACTTAGCAGTTGCATCAA+TGG 0.445405 1_3:+23246528 Msa0110400:CDS
TTACAGGACATAATCGCAAC+TGG 0.446375 1_3:+23242543 Msa0110400:intron
TGCTGCCTGCTATTAAAGCT+TGG 0.451598 1_3:+23246643 Msa0110400:three_prime_UTR
ATTATACTGGAAGATATTCC+AGG 0.453120 1_3:-23242001 None:intergenic
CAGAATTTGGAGTAGAAATA+GGG 0.462176 1_3:-23241721 None:intergenic
CTGCATCACTTGATGGCAGC+TGG 0.462700 1_3:+23244948 Msa0110400:CDS
TACAGGAGAGCCGCTTACTC+TGG 0.463440 1_3:+23238837 Msa0110400:CDS
TAGTGAGATAATGTAATTGT+TGG 0.464853 1_3:+23246870 Msa0110400:three_prime_UTR
GTAATATCCATTCTCAGAAA+AGG 0.469986 1_3:-23245500 None:intergenic
AGATTCTCTTGTTAAGATCT+GGG 0.470622 1_3:+23245314 Msa0110400:CDS
GAGTCAATACCAGAGTTTGT+TGG 0.471796 1_3:-23245730 None:intergenic
GCAAGCATTCCTGGCATGCT+TGG 0.474027 1_3:+23239062 Msa0110400:CDS
GTAACAAGCGTGAAGTTTGT+AGG 0.474487 1_3:+23242724 Msa0110400:CDS
CTTGTTAACTTGTAGTGTAC+TGG 0.474740 1_3:+23246946 Msa0110400:three_prime_UTR
TAGCAGGCAGCAACTGTCCC+TGG 0.478831 1_3:-23246632 None:intergenic
ATGCTCCTGTTCATAGCAAT+GGG 0.482893 1_3:+23241753 Msa0110400:CDS
AGACAGTTCGTTTGTGGCAA+GGG 0.486431 1_3:+23243201 Msa0110400:intron
TTAGACCAAGCTTTAATAGC+AGG 0.486431 1_3:-23246648 None:intergenic
AGCTGCAGATGTATAGCCTT+CGG 0.487652 1_3:-23245253 None:intergenic
ATGCTGCTCTTTCCGGGAAG+AGG 0.487878 1_3:+23242044 Msa0110400:CDS
CTCATTTATAGGAATGGGAT+GGG 0.490049 1_3:+23239307 Msa0110400:intron
GATGGTCTTATTCTTGGAAC+TGG 0.491366 1_3:+23245285 Msa0110400:CDS
TTCACATACCATGGTGTATG+TGG 0.496836 1_3:+23246730 Msa0110400:three_prime_UTR
CAGACAGTTCGTTTGTGGCA+AGG 0.499376 1_3:+23243200 Msa0110400:intron
AAAGTAATACCTTAGAATGA+AGG 0.500411 1_3:-23242359 None:intergenic
AATGCTCCTGTTCATAGCAA+TGG 0.505400 1_3:+23241752 Msa0110400:CDS
TGGAACATTCCAAGCATGCC+AGG 0.505625 1_3:-23239071 None:intergenic
AGCTGCTGATGACGAGGAGT+TGG 0.507322 1_3:+23241955 Msa0110400:intron
CCTCATTTATAGGAATGGGA+TGG 0.507870 1_3:+23239306 Msa0110400:intron
TTGGAGTTGCTGAGTCATAT+GGG 0.509156 1_3:-23245711 None:intergenic
GTACCTGTTCCAGATAAATC+AGG 0.512887 1_3:-23246358 None:intergenic
AGTCATATGGGCCATAGTCC+CGG 0.517272 1_3:-23245699 None:intergenic
CAAAGTAATTATTGGTGGCA+TGG 0.525985 1_3:-23244922 None:intergenic
GGCAGCAACTGTCCCTGGAT+CGG 0.530911 1_3:-23246627 None:intergenic
GCTAAGTTTGATGGACATGT+TGG 0.531185 1_3:+23245460 Msa0110400:CDS
AGTGAAGCCTAGACCAGTGC+AGG 0.532479 1_3:+23239037 Msa0110400:CDS
AGCGTGAAGTTTGTAGGTCA+GGG 0.533196 1_3:+23242730 Msa0110400:CDS
AAAAGGAACGAGACGAAGCT+AGG 0.533326 1_3:+23241669 Msa0110400:CDS
TTGTCAGAAATATCTTCGCC+AGG 0.533777 1_3:-23246577 None:intergenic
GTTCCAAGAATAAGACCATC+GGG 0.534047 1_3:-23245282 None:intergenic
TAACTGCAAACAGATCTTGA+AGG 0.534904 1_3:+23243241 Msa0110400:CDS
AATTGTTGGCCATTGCTACC+AGG 0.534982 1_3:+23246884 Msa0110400:three_prime_UTR
GTTCATAGCAATGGGAAAAG+AGG 0.541436 1_3:+23241761 Msa0110400:CDS
CTAAGTTTGATGGACATGTT+GGG 0.541761 1_3:+23245461 Msa0110400:CDS
TTGCAAATGTGAAATCTGAA+TGG 0.541920 1_3:+23246317 Msa0110400:CDS
CAGAAATATCTTCGCCAGGT+TGG 0.544143 1_3:-23246573 None:intergenic
GTAGCTAATACTTGTCCTGA+TGG 0.546408 1_3:-23242600 None:intergenic
TTGTGGCAAGGGTCAGATGA+TGG 0.550255 1_3:+23243212 Msa0110400:CDS
TCAACAGAAGCCAAAGTCGC+AGG 0.550956 1_3:-23242258 None:intergenic
TTCAGGAACTTGTCTGACTC+AGG 0.555913 1_3:+23244988 Msa0110400:CDS
TTTCATACCGAATTACAAGT+AGG 0.560373 1_3:-23243338 None:intergenic
AGCTAGGTCTATACTTGCAC+AGG 0.561984 1_3:+23241685 Msa0110400:CDS
TCCATAGTCTTGCCGATCCA+GGG 0.564581 1_3:+23246615 Msa0110400:three_prime_UTR
TAGGTTTCTGACTCTTCCGA+AGG 0.569370 1_3:+23245237 Msa0110400:intron
TCTGAAGTCTGTATTGCCCT+CGG 0.569823 1_3:+23246823 Msa0110400:three_prime_UTR
CTATACTTGCACAGGCAGAA+AGG 0.575588 1_3:+23241693 Msa0110400:CDS
TAGCAGTTGCATCAATGGAC+CGG 0.577692 1_3:+23246533 Msa0110400:CDS
TCAGCAACTCCAACAAACTC+TGG 0.577891 1_3:+23245721 Msa0110400:CDS
AGGCTCATCTGGAACCTCAC+CGG 0.580055 1_3:-23236555 None:intergenic
AGAGCCTGCAACTGCAAGGT+AGG 0.584256 1_3:-23245862 None:intergenic
GTTAAGTCATGCTCTATACC+AGG 0.586754 1_3:+23239383 Msa0110400:CDS
AATGCGAAGAAATTACATCC+TGG 0.591581 1_3:+23241983 Msa0110400:CDS
AGTCACAAAGTAATTATTGG+TGG 0.592605 1_3:-23244927 None:intergenic
AGTTCCAAGAATAAGACCAT+CGG 0.599921 1_3:-23245283 None:intergenic
CTAATACTTGTCCTGATGGA+CGG 0.602167 1_3:-23242596 None:intergenic
TGTACTGGTGATAATATGGA+AGG 0.616284 1_3:+23246961 Msa0110400:three_prime_UTR
CATCAGAGCCTGCAACTGCA+AGG 0.620846 1_3:-23245866 None:intergenic
TCGAGAAGAGATTAATCGAG+AGG 0.622459 1_3:+23236606 Msa0110400:CDS
ACATACACCATGGTATGTGA+AGG 0.629136 1_3:-23246728 None:intergenic
ACAATATCATCCAGAGTAAG+CGG 0.631161 1_3:-23238847 None:intergenic
AGCAGCAGTTGCATACAGCA+AGG 0.634251 1_3:+23239355 Msa0110400:CDS
TGATAGACCGCAGCTCATGA+TGG 0.652388 1_3:+23245640 Msa0110400:intron
TGTGCCGATCAAAACAGGCA+AGG 0.675176 1_3:+23238867 Msa0110400:CDS
TTAAACAAAACTAGCAAACA+GGG 0.680512 1_3:+23242318 Msa0110400:CDS
TGAGAATGGATATTACCTTG+CGG 0.683014 1_3:+23245507 Msa0110400:CDS
CTTTACACCATCATGAGCTG+CGG 0.684333 1_3:-23245647 None:intergenic
ATACCATGGTGTATGTGGAG+TGG 0.684790 1_3:+23246735 Msa0110400:three_prime_UTR
GCTCCACTCCACATACACCA+TGG 0.696162 1_3:-23246738 None:intergenic
GCAGTGGAGTTTGACCACAG+TGG 0.700459 1_3:+23245837 Msa0110400:intron
TGAGGTTCCAGATGAGCCTG+TGG 0.703744 1_3:+23236559 Msa0110400:CDS
CAAGTATTAGCTACACTCAG+CGG 0.734442 1_3:+23242609 Msa0110400:CDS
TTAACTGGAGCAGTTCATCG+TGG 0.745700 1_3:-23236426 None:intergenic
CTGCAAGGTAGGATCCACTG+TGG 0.800585 1_3:-23245851 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAGTTTTATAACATTTT+GGG + chr1_3:23237261-23237280 Msa0110400:intron 10.0%
!! TATTTCCTATAATTTATAAT+TGG + chr1_3:23239502-23239521 Msa0110400:intron 10.0%
!! AAACCTTAATATATAAAAAT+AGG - chr1_3:23240835-23240854 None:intergenic 10.0%
!!! AGCAAAATATTTTTTAATTA+AGG + chr1_3:23242394-23242413 Msa0110400:intron 10.0%
!!! TTGTAAAATAATAAATGTTT+TGG + chr1_3:23243514-23243533 Msa0110400:intron 10.0%
!! ACTAATTTAATTGAAATATA+TGG - chr1_3:23244154-23244173 None:intergenic 10.0%
!! AATATAAAAGAAAAAATGTT+CGG - chr1_3:23245015-23245034 None:intergenic 10.0%
!!! TTTTATTTTGAAATGATATT+TGG + chr1_3:23245422-23245441 Msa0110400:intron 10.0%
!!! ATGGGATTTTTTTTTTTTTT+TGG + chr1_3:23236855-23236874 Msa0110400:intron 15.0%
!!! GTATTAGTTTTATAACATTT+TGG + chr1_3:23237260-23237279 Msa0110400:intron 15.0%
!!! TGTTTAAAATATAAAACGAT+AGG + chr1_3:23237961-23237980 Msa0110400:intron 15.0%
!! AGAAACCAATTATAAATTAT+AGG - chr1_3:23239510-23239529 None:intergenic 15.0%
!! ATTTAATAATGAAATTCAAG+AGG - chr1_3:23239582-23239601 None:intergenic 15.0%
!!! AAAATGATTTTTTTCTTTTC+TGG + chr1_3:23239603-23239622 Msa0110400:intron 15.0%
!!! TAATTTTAATCCTTAGTTTT+TGG + chr1_3:23239855-23239874 Msa0110400:intron 15.0%
!!! TATTTTCTTCATATGAAAAT+TGG + chr1_3:23240124-23240143 Msa0110400:intron 15.0%
!! AAGAAAGTTATAAAGAATTA+TGG - chr1_3:23240262-23240281 None:intergenic 15.0%
!! TATATAAAATGAATCTCAAA+TGG - chr1_3:23240635-23240654 None:intergenic 15.0%
!!! ATTTTATATATTCTCAGATA+AGG + chr1_3:23240645-23240664 Msa0110400:intron 15.0%
!!! AACTCCTATTTTATATATTA+AGG + chr1_3:23240695-23240714 Msa0110400:intron 15.0%
!! TACACCTTAATATATAAAAT+AGG - chr1_3:23240702-23240721 None:intergenic 15.0%
!!! ACTCCTATTTTTATATATTA+AGG + chr1_3:23240829-23240848 Msa0110400:intron 15.0%
!! TTAAGATAATAACTAATCAA+AGG + chr1_3:23241146-23241165 Msa0110400:intron 15.0%
!! TAAGATAATAACTAATCAAA+GGG + chr1_3:23241147-23241166 Msa0110400:intron 15.0%
!!! TTTTGATTAAAAAAAAAGAC+AGG + chr1_3:23241191-23241210 Msa0110400:intron 15.0%
!! AAAACTAAAATTAACAACTA+GGG - chr1_3:23241606-23241625 None:intergenic 15.0%
!! TAAAACTAAAATTAACAACT+AGG - chr1_3:23241607-23241626 None:intergenic 15.0%
!!! TGTAATTTCAAATTTTTCAA+AGG - chr1_3:23242158-23242177 None:intergenic 15.0%
!! TGATAAGAATTTATAAATAG+AGG + chr1_3:23244477-23244496 Msa0110400:intron 15.0%
!!! CACCAAATTTAATTTAAATT+GGG - chr1_3:23244545-23244564 None:intergenic 15.0%
!!! TCTTTTTTTAAAAAAACTTG+AGG + chr1_3:23244678-23244697 Msa0110400:intron 15.0%
!! CAAAAATCAATATAATTCTT+CGG - chr1_3:23246222-23246241 None:intergenic 15.0%
!!! AATTTTGTGAATAGTAGTTT+AGG + chr1_3:23236681-23236700 Msa0110400:intron 20.0%
!!! ATTTTGTGAATAGTAGTTTA+GGG + chr1_3:23236682-23236701 Msa0110400:intron 20.0%
!! TGAATTTGTGAACAATAATT+AGG + chr1_3:23236765-23236784 Msa0110400:intron 20.0%
!! GAATTTGTGAACAATAATTA+GGG + chr1_3:23236766-23236785 Msa0110400:intron 20.0%
!! ATAGTAGAAATAAATAGTGT+TGG + chr1_3:23237322-23237341 Msa0110400:intron 20.0%
!! TTTGAGAAAATTACATAACT+CGG - chr1_3:23237408-23237427 None:intergenic 20.0%
!!! TCCATTACAAATTTTTAGTT+GGG - chr1_3:23237826-23237845 None:intergenic 20.0%
!!! TTCCATTACAAATTTTTAGT+TGG - chr1_3:23237827-23237846 None:intergenic 20.0%
!!! TAATATACCGAATTTTGTAT+TGG + chr1_3:23237926-23237945 Msa0110400:intron 20.0%
!!! TCAAAATTCAAATCACATTT+TGG - chr1_3:23237999-23238018 None:intergenic 20.0%
!!! ATTTGAATTTTGATAGAAAC+CGG + chr1_3:23238006-23238025 Msa0110400:intron 20.0%
!! ATAGAATATGATTACACAAT+AGG + chr1_3:23238073-23238092 Msa0110400:intron 20.0%
!! ATAAGTTACTGGATAAATAA+GGG - chr1_3:23238212-23238231 None:intergenic 20.0%
!! AATAAGTTACTGGATAAATA+AGG - chr1_3:23238213-23238232 None:intergenic 20.0%
!!! TATGCAGTTGTTATTTTATT+AGG - chr1_3:23238305-23238324 None:intergenic 20.0%
!!! AAATGTTTTTGTTATGCAAT+AGG + chr1_3:23238677-23238696 Msa0110400:intron 20.0%
!!! TAGTTTTCATGATATTTTTC+AGG + chr1_3:23238725-23238744 Msa0110400:intron 20.0%
!!! TTCTATACATACATACATTT+TGG - chr1_3:23239094-23239113 None:intergenic 20.0%
!! ATTTATAAGTTAATTGTTCC+AGG + chr1_3:23239183-23239202 Msa0110400:intron 20.0%
!!! AAATTTTTTCCCTCATTTAT+AGG + chr1_3:23239296-23239315 Msa0110400:intron 20.0%
!!! TGTAGAAGATAATAATTTGT+TGG - chr1_3:23239431-23239450 None:intergenic 20.0%
!! TATAGGAAATATTAATAACC+CGG - chr1_3:23239493-23239512 None:intergenic 20.0%
!! TAAAATTACAAAGAAGCAAT+AGG - chr1_3:23239843-23239862 None:intergenic 20.0%
!! AAAACATGAAGAAAATTGAT+TGG - chr1_3:23240027-23240046 None:intergenic 20.0%
!! AAATAGTGAAAAATCGTAAA+TGG - chr1_3:23240109-23240128 None:intergenic 20.0%
!! AAAAAAATTGTCCAGAAAAT+CGG - chr1_3:23240238-23240257 None:intergenic 20.0%
!!! ATTTTATTCTATCATGTGTT+TGG - chr1_3:23240444-23240463 None:intergenic 20.0%
!! ATTAGAAAATGGATAAAGAT+AGG - chr1_3:23240541-23240560 None:intergenic 20.0%
!!! TCTTTTACTATTGGAAAATA+AGG + chr1_3:23240778-23240797 Msa0110400:intron 20.0%
!! AAGATAATAACTAATCAAAG+GGG + chr1_3:23241148-23241167 Msa0110400:intron 20.0%
!! TAAGTCAAACAAATGAAAAA+AGG - chr1_3:23241458-23241477 None:intergenic 20.0%
!!! GAAAATTTGAAATCATTATC+AGG - chr1_3:23241552-23241571 None:intergenic 20.0%
!! ACTTTAAACTCTAATGTTTA+GGG - chr1_3:23241843-23241862 None:intergenic 20.0%
!! AAAGTAATACCTTAGAATAA+AGG - chr1_3:23242438-23242457 None:intergenic 20.0%
!!! TATCCCTTTCTAATTTTATA+AGG + chr1_3:23242793-23242812 Msa0110400:intron 20.0%
!! CTACCTTATAAAATTAGAAA+GGG - chr1_3:23242799-23242818 None:intergenic 20.0%
!! ACTACCTTATAAAATTAGAA+AGG - chr1_3:23242800-23242819 None:intergenic 20.0%
!!! TCTAATTTTATAAGGTAGTT+TGG + chr1_3:23242801-23242820 Msa0110400:intron 20.0%
!! AAAATATCAAGTGTGAAATT+TGG - chr1_3:23243016-23243035 None:intergenic 20.0%
!!! TCAAATTCACAATTTTAAGA+CGG - chr1_3:23243113-23243132 None:intergenic 20.0%
!! AAAAGATTTATAGACCATTA+GGG - chr1_3:23243165-23243184 None:intergenic 20.0%
!! TAAAAGATTTATAGACCATT+AGG - chr1_3:23243166-23243185 None:intergenic 20.0%
!! ACAAGAAACAATGAAAAATT+AGG - chr1_3:23243308-23243327 None:intergenic 20.0%
!!! ATAAAACTTGATTGTCTTTT+TGG + chr1_3:23243467-23243486 Msa0110400:intron 20.0%
!!! TAAAACTTGATTGTCTTTTT+GGG + chr1_3:23243468-23243487 Msa0110400:intron 20.0%
!!! AACAGACTTTAAAACATTTT+TGG + chr1_3:23244010-23244029 Msa0110400:intron 20.0%
!!! TTTTAGCAAAAGTTTGTTTT+GGG + chr1_3:23244060-23244079 Msa0110400:intron 20.0%
!!! TGCATTTAAAATAAAACTGT+CGG - chr1_3:23244353-23244372 None:intergenic 20.0%
!!! GTTTTGGTATACAAATTATT+GGG + chr1_3:23244422-23244441 Msa0110400:intron 20.0%
!!! CCACCAAATTTAATTTAAAT+TGG - chr1_3:23244546-23244565 None:intergenic 20.0%
!! CCAATTTAAATTAAATTTGG+TGG + chr1_3:23244543-23244562 Msa0110400:intron 20.0%
!! ATTCTAGTATGTAAATAGTA+GGG - chr1_3:23245773-23245792 None:intergenic 20.0%
!! TATTCTAGTATGTAAATAGT+AGG - chr1_3:23245774-23245793 None:intergenic 20.0%
!! AATATTGTACCTATTTCATA+AGG + chr1_3:23245790-23245809 Msa0110400:intron 20.0%
!! TAAATCATTACCAATCTAAA+GGG - chr1_3:23246190-23246209 None:intergenic 20.0%
!! TTAAATCATTACCAATCTAA+AGG - chr1_3:23246191-23246210 None:intergenic 20.0%
!!! CGAAGAATTATATTGATTTT+TGG + chr1_3:23246220-23246239 Msa0110400:intron 20.0%
!! ATAATAATAATAGATAGGAG+CGG - chr1_3:23246398-23246417 None:intergenic 20.0%
!! CAGGAATAATAATAATAGAT+AGG - chr1_3:23246403-23246422 None:intergenic 20.0%
!!! GCGATTTGTTTTTCTTTTTT+TGG + chr1_3:23236519-23236538 Msa0110400:intron 25.0%
! GTTTAATTGAGAAATTGAAG+TGG + chr1_3:23236827-23236846 Msa0110400:intron 25.0%
! AGAAATTGAAGTGGATAAAA+TGG + chr1_3:23236836-23236855 Msa0110400:intron 25.0%
! GAAATTGAAGTGGATAAAAT+GGG + chr1_3:23236837-23236856 Msa0110400:intron 25.0%
!! TAATGAAGATACAATTTTCG+TGG - chr1_3:23236990-23237009 None:intergenic 25.0%
! CCTAAAATGAACTAAACTAT+GGG - chr1_3:23237106-23237125 None:intergenic 25.0%
! ACCTAAAATGAACTAAACTA+TGG - chr1_3:23237107-23237126 None:intergenic 25.0%
!!! TTGGTCTTTTATGTTTTTCA+AGG + chr1_3:23237136-23237155 Msa0110400:intron 25.0%
!!! TGGTCTTTTATGTTTTTCAA+GGG + chr1_3:23237137-23237156 Msa0110400:intron 25.0%
!!! AAATTTTAGATGGAGTGTTA+GGG + chr1_3:23237193-23237212 Msa0110400:intron 25.0%
!!! TAGTTTTATAACATTTTGGG+TGG + chr1_3:23237264-23237283 Msa0110400:intron 25.0%
! TTAAAGCGAGACAATATTTA+AGG + chr1_3:23237542-23237561 Msa0110400:intron 25.0%
!! CTATTTAAAGTGTTTAGTAG+TGG + chr1_3:23237786-23237805 Msa0110400:intron 25.0%
!!! CCATTACAAATTTTTAGTTG+GGG - chr1_3:23237825-23237844 None:intergenic 25.0%
! CCTAAAACCAATACAAAATT+CGG - chr1_3:23237936-23237955 None:intergenic 25.0%
!!! TTCTATTCTGTTTCTATGTT+CGG - chr1_3:23238034-23238053 None:intergenic 25.0%
!! ATTAGGAACAGTTATGTTTT+AGG - chr1_3:23238248-23238267 None:intergenic 25.0%
! TATGTTTATGTCCTATCTAT+CGG + chr1_3:23238439-23238458 Msa0110400:intron 25.0%
! TATGTTTATGTCCTATCTAT+AGG + chr1_3:23238439-23238458 Msa0110400:intron 25.0%
!! AGCGTATATGAATTATGTTT+TGG + chr1_3:23238505-23238524 Msa0110400:intron 25.0%
!! GCGTATATGAATTATGTTTT+GGG + chr1_3:23238506-23238525 Msa0110400:intron 25.0%
! AGATAGGAAATAAACAACAA+CGG - chr1_3:23238570-23238589 None:intergenic 25.0%
! TATCGTTGAATGAAAGAAAA+TGG + chr1_3:23238589-23238608 Msa0110400:intron 25.0%
! ATCGTTGAATGAAAGAAAAT+GGG + chr1_3:23238590-23238609 Msa0110400:intron 25.0%
! TTTGTTGAAATCAATCGAAT+AGG + chr1_3:23238795-23238814 Msa0110400:intron 25.0%
!! AAATCAATCGAATAGGATTT+TGG + chr1_3:23238802-23238821 Msa0110400:intron 25.0%
!! AATCAATCGAATAGGATTTT+GGG + chr1_3:23238803-23238822 Msa0110400:intron 25.0%
! ATAGGAAAATAAAAGAACCA+CGG - chr1_3:23238971-23238990 None:intergenic 25.0%
!! TTTGCAGTTTGATAATTATC+AGG + chr1_3:23238996-23239015 Msa0110400:intron 25.0%
! TGTATGTATGTATAGAATTG+AGG + chr1_3:23239097-23239116 Msa0110400:intron 25.0%
! TAATTGTTCCAGGAATTTAA+TGG + chr1_3:23239193-23239212 Msa0110400:intron 25.0%
!! AATATTAATAACCCGGTTTT+AGG - chr1_3:23239486-23239505 None:intergenic 25.0%
! GAAAACTTACACTAACAAAT+CGG - chr1_3:23239556-23239575 None:intergenic 25.0%
! AATAATGAAATTCAAGAGGA+TGG - chr1_3:23239578-23239597 None:intergenic 25.0%
!!! TCTATATCTCTTAGCTTTTA+CGG + chr1_3:23239700-23239719 Msa0110400:intron 25.0%
! AATAGGATAGGATAAGTAAT+AGG - chr1_3:23239826-23239845 None:intergenic 25.0%
!!! TTTTAATCCTTAGTTTTTGG+TGG + chr1_3:23239858-23239877 Msa0110400:intron 25.0%
!!! TTTAATCCTTAGTTTTTGGT+GGG + chr1_3:23239859-23239878 Msa0110400:intron 25.0%
! TGATTGGGAAGAAAATATAT+TGG - chr1_3:23240056-23240075 None:intergenic 25.0%
!! TATTTTCTTCCCAATCAATT+TGG + chr1_3:23240059-23240078 Msa0110400:intron 25.0%
! AAAATGATTGGAGTAACATT+GGG - chr1_3:23240188-23240207 None:intergenic 25.0%
! AAAAATGATTGGAGTAACAT+TGG - chr1_3:23240189-23240208 None:intergenic 25.0%
! AATCGTAATTCAGAAAGATT+GGG - chr1_3:23240297-23240316 None:intergenic 25.0%
! AAATCGTAATTCAGAAAGAT+TGG - chr1_3:23240298-23240317 None:intergenic 25.0%
! CACACATAATTAAATCGATT+GGG - chr1_3:23240387-23240406 None:intergenic 25.0%
! ACACACATAATTAAATCGAT+TGG - chr1_3:23240388-23240407 None:intergenic 25.0%
! TATATCTTATCATCTTGTTG+AGG + chr1_3:23241787-23241806 Msa0110400:intron 25.0%
! TTTAAACTCTAATGTTTAGG+GGG - chr1_3:23241841-23241860 None:intergenic 25.0%
! CTTTAAACTCTAATGTTTAG+GGG - chr1_3:23241842-23241861 None:intergenic 25.0%
! CACTTTAAACTCTAATGTTT+AGG - chr1_3:23241844-23241863 None:intergenic 25.0%
!!! TGTTTGCTAGTTTTGTTTAA+GGG - chr1_3:23242318-23242337 None:intergenic 25.0%
! TTAAACAAAACTAGCAAACA+GGG + chr1_3:23242318-23242337 Msa0110400:CDS 25.0%
! AAAGTAATACCTTAGAATGA+AGG - chr1_3:23242362-23242381 None:intergenic 25.0%
! TCTTGATATCCTTTATTCTA+AGG + chr1_3:23242426-23242445 Msa0110400:intron 25.0%
!!! CTTATTTTAGTTGGAATTGA+AGG + chr1_3:23242651-23242670 Msa0110400:intron 25.0%
! TAGTTCACATATAAATTCAC+AGG - chr1_3:23242987-23243006 None:intergenic 25.0%
! GTGAATTTATATGTGAACTA+TGG + chr1_3:23242987-23243006 Msa0110400:intron 25.0%
! TGTTTATCCTACTTGTAATT+CGG + chr1_3:23243331-23243350 Msa0110400:CDS 25.0%
!! AAAACTTGATTGTCTTTTTG+GGG + chr1_3:23243469-23243488 Msa0110400:intron 25.0%
!! ATTGAAAAGTTTCCTTTTTG+AGG - chr1_3:23243598-23243617 None:intergenic 25.0%
! ATCATAATGTTAAGGAGTTA+AGG - chr1_3:23243671-23243690 None:intergenic 25.0%
!!! CTTTAAAACATTTTTGGTTG+TGG + chr1_3:23244016-23244035 Msa0110400:intron 25.0%
!! AACAAACTTTTGCTAAAACA+TGG - chr1_3:23244058-23244077 None:intergenic 25.0%
!!! GTTTTAGCAAAAGTTTGTTT+TGG + chr1_3:23244059-23244078 Msa0110400:intron 25.0%
!! GCATTTAAAATAAAACTGTC+GGG - chr1_3:23244352-23244371 None:intergenic 25.0%
!!! GGTTTTGGTATACAAATTAT+TGG + chr1_3:23244421-23244440 Msa0110400:intron 25.0%
! GGCCCAATTTAAATTAAATT+TGG + chr1_3:23244540-23244559 Msa0110400:intron 25.0%
! AAAACATCAAATTGTAGTGA+AGG - chr1_3:23244629-23244648 None:intergenic 25.0%
! TAGCAGGTTTATCATTAATA+TGG + chr1_3:23245555-23245574 Msa0110400:intron 25.0%
! AGGTACAATAAATTAGTTCA+AGG - chr1_3:23246272-23246291 None:intergenic 25.0%
! TAATAATAATAGATAGGAGC+GGG - chr1_3:23246397-23246416 None:intergenic 25.0%
! CAATAAATACTAGATGTGTA+TGG - chr1_3:23246428-23246447 None:intergenic 25.0%
!!! AACTTGAACCATTTATTTTC+AGG + chr1_3:23246469-23246488 Msa0110400:intron 25.0%
! TGGATTTACCTGAAAATAAA+TGG - chr1_3:23246480-23246499 None:intergenic 25.0%
! AAATCCACATGTGTAAAATT+CGG + chr1_3:23246493-23246512 Msa0110400:CDS 25.0%
! TGGAGCAAAAAATATATTCA+AGG + chr1_3:23246755-23246774 Msa0110400:three_prime_UTR 25.0%
! TAGTGAGATAATGTAATTGT+TGG + chr1_3:23246870-23246889 Msa0110400:three_prime_UTR 25.0%
! GAAGAAGAAATTAGGGTTTT+GGG - chr1_3:23236401-23236420 None:intergenic 30.0%
TAGAGGAAGAAGAAATTAAC+TGG - chr1_3:23236444-23236463 None:intergenic 30.0%
!!! TTTTGGTTTTTTGCAGTTTC+CGG + chr1_3:23236536-23236555 Msa0110400:intron 30.0%
! ATTAATCGAGAGGCATATAA+TGG + chr1_3:23236616-23236635 Msa0110400:CDS 30.0%
TCACAAAATTGAACTGCAAA+AGG - chr1_3:23236671-23236690 None:intergenic 30.0%
!!! TTTTTTTGGTGAGTGTCTTT+TGG + chr1_3:23236869-23236888 Msa0110400:intron 30.0%
AAAAATAAGCCAGTCCAAAT+GGG - chr1_3:23236903-23236922 None:intergenic 30.0%
GTATTGTTCATAAGCTTGTA+TGG - chr1_3:23237032-23237051 None:intergenic 30.0%
AAAAATAAGCCAATCCAAAC+AGG + chr1_3:23237080-23237099 Msa0110400:intron 30.0%
!! CCCATAGTTTAGTTCATTTT+AGG + chr1_3:23237103-23237122 Msa0110400:intron 30.0%
!!! CATTTTAGGTTGAAAGTGTT+TGG + chr1_3:23237117-23237136 Msa0110400:intron 30.0%
!!! GTTTTTCAAGGGTATTATAG+TGG + chr1_3:23237148-23237167 Msa0110400:intron 30.0%
! TGGTCAACTCAAATTTTAGA+TGG + chr1_3:23237183-23237202 Msa0110400:intron 30.0%
!! CAAATTTTAGATGGAGTGTT+AGG + chr1_3:23237192-23237211 Msa0110400:intron 30.0%
!! TGGTCTTGTAACTAATTTGA+AGG + chr1_3:23237295-23237314 Msa0110400:intron 30.0%
TTTCCATGTTTCATAGTTGT+CGG + chr1_3:23237453-23237472 Msa0110400:intron 30.0%
CCTAATACCAATACAAAAGT+CGG - chr1_3:23237597-23237616 None:intergenic 30.0%
!! TTCTTTTCTCCTTGTTGTAT+CGG + chr1_3:23237669-23237688 Msa0110400:intron 30.0%
! TTTTGGTGAATGAAAGAAAG+TGG + chr1_3:23237699-23237718 Msa0110400:intron 30.0%
TTTGGTGAATGAAAGAAAGT+GGG + chr1_3:23237700-23237719 Msa0110400:intron 30.0%
CCCCAACTAAAAATTTGTAA+TGG + chr1_3:23237822-23237841 Msa0110400:intron 30.0%
TATTAGTTATGCTGATGTCT+CGG - chr1_3:23237899-23237918 None:intergenic 30.0%
!!! CCGAATTTTGTATTGGTTTT+AGG + chr1_3:23237933-23237952 Msa0110400:intron 30.0%
! ATGTCGATAGGCATTTTATT+GGG - chr1_3:23238177-23238196 None:intergenic 30.0%
! AATGTCGATAGGCATTTTAT+TGG - chr1_3:23238178-23238197 None:intergenic 30.0%
GTTACTAGAGAATAAGTTAC+TGG - chr1_3:23238223-23238242 None:intergenic 30.0%
ATGTGTAGCAGTTATGTATT+AGG - chr1_3:23238265-23238284 None:intergenic 30.0%
AACATAATTCACCGATAGAT+AGG - chr1_3:23238453-23238472 None:intergenic 30.0%
CTTTCAAATCTCCTATAGAT+AGG - chr1_3:23238481-23238500 None:intergenic 30.0%
!!! GAATTATGTTTTGGGAGATT+TGG + chr1_3:23238514-23238533 Msa0110400:intron 30.0%
TCTTTCATTCAACGATAGAT+AGG - chr1_3:23238586-23238605 None:intergenic 30.0%
TCGTTGAATGAAAGAAAATG+GGG + chr1_3:23238591-23238610 Msa0110400:intron 30.0%
ATCAAACTGCAAATACACAT+AGG - chr1_3:23238989-23239008 None:intergenic 30.0%
! AAGTTTTCCTGACAAATACT+TGG + chr1_3:23239230-23239249 Msa0110400:intron 30.0%
! TTTTCCCTCATTTATAGGAA+TGG + chr1_3:23239301-23239320 Msa0110400:intron 30.0%
TTTCCCTCATTTATAGGAAT+GGG + chr1_3:23239302-23239321 Msa0110400:intron 30.0%
! GATGCTATCTAATTTTGCAT+TGG + chr1_3:23239332-23239351 Msa0110400:CDS 30.0%
! ATAATTTTGTTACCCTTACC+TGG - chr1_3:23239404-23239423 None:intergenic 30.0%
GTACATTATCATGTTGTGAT+GGG - chr1_3:23239633-23239652 None:intergenic 30.0%
! CATCACAACATGATAATGTA+CGG + chr1_3:23239632-23239651 Msa0110400:intron 30.0%
! ATCACAACATGATAATGTAC+GGG + chr1_3:23239633-23239652 Msa0110400:intron 30.0%
TTACAAAGAAGCAATAGGAT+AGG - chr1_3:23239838-23239857 None:intergenic 30.0%
!! TTTGATAGCTTTATGCTATC+AGG - chr1_3:23239892-23239911 None:intergenic 30.0%
! GATTGGAATTGATATCGATT+GGG - chr1_3:23240010-23240029 None:intergenic 30.0%
TGATTGGAATTGATATCGAT+TGG - chr1_3:23240011-23240030 None:intergenic 30.0%
TTGGGAAGAAAATATATTGG+AGG - chr1_3:23240053-23240072 None:intergenic 30.0%
GTTGCACAAAACATAACATT+GGG - chr1_3:23240216-23240235 None:intergenic 30.0%
CATTTATCCTATCATGTGTT+TGG - chr1_3:23240497-23240516 None:intergenic 30.0%
CACATGATAGGATTAGAAAA+TGG - chr1_3:23240552-23240571 None:intergenic 30.0%
TGATATGATAGACACATGAT+AGG - chr1_3:23240564-23240583 None:intergenic 30.0%
! GTTGCGATTTCTTTTACTAT+TGG + chr1_3:23240769-23240788 Msa0110400:intron 30.0%
! GTTGCGATTTCTTTTACTAT+TGG + chr1_3:23240769-23240788 Msa0110400:intron 30.0%
TACACATTACAACTAAGTAC+AGG + chr1_3:23241220-23241239 Msa0110400:intron 30.0%
!! GAAGTTGGAGAGTATTTAAA+TGG + chr1_3:23241244-23241263 Msa0110400:intron 30.0%
!!! TAAATGGCGAGAAGTTTTTT+TGG + chr1_3:23241260-23241279 Msa0110400:intron 30.0%
TCAAGATAAGAAATCATACC+AGG - chr1_3:23241517-23241536 None:intergenic 30.0%
ACTAAAATTAACAACTAGGG+CGG - chr1_3:23241603-23241622 None:intergenic 30.0%
! CAGAATTTGGAGTAGAAATA+GGG - chr1_3:23241724-23241743 None:intergenic 30.0%
! ACAGAATTTGGAGTAGAAAT+AGG - chr1_3:23241725-23241744 None:intergenic 30.0%
ATTATACTGGAAGATATTCC+AGG - chr1_3:23242004-23242023 None:intergenic 30.0%
TGTTAGCTCAGAAATTATAC+TGG - chr1_3:23242017-23242036 None:intergenic 30.0%
!!! CTGTTTGCTAGTTTTGTTTA+AGG - chr1_3:23242319-23242338 None:intergenic 30.0%
CTTAAACAAAACTAGCAAAC+AGG + chr1_3:23242317-23242336 Msa0110400:CDS 30.0%
TCTTGATATCCTTCATTCTA+AGG + chr1_3:23242350-23242369 Msa0110400:CDS 30.0%
! ATCAACTTATTCCGTTTTAC+AGG + chr1_3:23242527-23242546 Msa0110400:intron 30.0%
AATGCAAATGTAAATCGCAA+GGG - chr1_3:23243044-23243063 None:intergenic 30.0%
AAATGCAAATGTAAATCGCA+AGG - chr1_3:23243045-23243064 None:intergenic 30.0%
TCAACAGACACATCTATTAT+GGG - chr1_3:23243073-23243092 None:intergenic 30.0%
TTCAACAGACACATCTATTA+TGG - chr1_3:23243074-23243093 None:intergenic 30.0%
! TGCAAAACTACATCTTTTCA+GGG - chr1_3:23243140-23243159 None:intergenic 30.0%
! ATGCAAAACTACATCTTTTC+AGG - chr1_3:23243141-23243160 None:intergenic 30.0%
AAAAATTAGGAACAGCAATG+TGG - chr1_3:23243295-23243314 None:intergenic 30.0%
TTTCATACCGAATTACAAGT+AGG - chr1_3:23243341-23243360 None:intergenic 30.0%
TTCGGTATGAAATTGAATCT+TGG + chr1_3:23243349-23243368 Msa0110400:intron 30.0%
TCGGTATGAAATTGAATCTT+GGG + chr1_3:23243350-23243369 Msa0110400:intron 30.0%
!! AGTTTTATCCTACTTGTACT+AGG - chr1_3:23243455-23243474 None:intergenic 30.0%
ATAATGTTAAGGAGTTAAGG+AGG - chr1_3:23243668-23243687 None:intergenic 30.0%
CTCCTTAACATTATGATAAC+AGG + chr1_3:23243674-23243693 Msa0110400:intron 30.0%
AGCCTGTTATCATAATGTTA+AGG - chr1_3:23243679-23243698 None:intergenic 30.0%
TTATGATAACAGGCTTATTC+AGG + chr1_3:23243684-23243703 Msa0110400:intron 30.0%
AGACTTGTAAAAGTTAACTG+TGG - chr1_3:23243726-23243745 None:intergenic 30.0%
AATATGGTAAGTGGTCTAAT+TGG - chr1_3:23243928-23243947 None:intergenic 30.0%
!!! AAAACATTTTTGGTTGTGGA+TGG + chr1_3:23244020-23244039 Msa0110400:intron 30.0%
!!! AAACATTTTTGGTTGTGGAT+GGG + chr1_3:23244021-23244040 Msa0110400:intron 30.0%
AATCGTTCAAATTCTGATTC+AGG - chr1_3:23244300-23244319 None:intergenic 30.0%
TTATCTTCAATCCAAGAATC+AGG + chr1_3:23244716-23244735 Msa0110400:intron 30.0%
GTTTATGAAATCCTGATTCT+TGG - chr1_3:23244730-23244749 None:intergenic 30.0%
GTCAAGAATAGCAATCATAA+AGG - chr1_3:23244761-23244780 None:intergenic 30.0%
AGTCACAAAGTAATTATTGG+TGG - chr1_3:23244930-23244949 None:intergenic 30.0%
TGCAGTCACAAAGTAATTAT+TGG - chr1_3:23244933-23244952 None:intergenic 30.0%
! TGCTTTTATGAACTATCTTC+AGG + chr1_3:23244971-23244990 Msa0110400:CDS 30.0%
! ATTGATTCATAAGTGTCTTG+TGG + chr1_3:23245046-23245065 Msa0110400:intron 30.0%
!! TAGAGGTGTCTAAAAGAATA+CGG + chr1_3:23245079-23245098 Msa0110400:intron 30.0%
! GACAATGATTTGGCATTTAT+AGG + chr1_3:23245218-23245237 Msa0110400:intron 30.0%
AGATTCTCTTGTTAAGATCT+GGG + chr1_3:23245314-23245333 Msa0110400:CDS 30.0%
TTGAAATGATATTTGGTTGC+AGG + chr1_3:23245429-23245448 Msa0110400:intron 30.0%
GTAATATCCATTCTCAGAAA+AGG - chr1_3:23245503-23245522 None:intergenic 30.0%
AAAATGTAACCAGTATTAGC+AGG + chr1_3:23245539-23245558 Msa0110400:intron 30.0%
AATGATAAACCTGCTAATAC+TGG - chr1_3:23245551-23245570 None:intergenic 30.0%
AGATGAAGACCTTATGAAAT+AGG - chr1_3:23245802-23245821 None:intergenic 30.0%
TAATTCTTTGTATCTTGCAG+TGG + chr1_3:23245821-23245840 Msa0110400:intron 30.0%
!!! AAGTTGTTTTTGCATAGCTT+AGG + chr1_3:23246043-23246062 Msa0110400:intron 30.0%
!!! AGTTGTTTTTGCATAGCTTA+GGG + chr1_3:23246044-23246063 Msa0110400:intron 30.0%
!! TACCAATCTAAAGGGTATTT+GGG - chr1_3:23246182-23246201 None:intergenic 30.0%
!! TTACCAATCTAAAGGGTATT+TGG - chr1_3:23246183-23246202 None:intergenic 30.0%
TTAGTTCAAGGAAAGACTAA+TGG - chr1_3:23246260-23246279 None:intergenic 30.0%
AAAACTCTTCCTGATTTATC+TGG + chr1_3:23246349-23246368 Msa0110400:CDS 30.0%
!! CTGCTAAGTATTTTGAATCT+GGG - chr1_3:23246519-23246538 None:intergenic 30.0%
!! ACTGCTAAGTATTTTGAATC+TGG - chr1_3:23246520-23246539 None:intergenic 30.0%
CTTGGTCTAATTTCATTTGT+TGG + chr1_3:23246661-23246680 Msa0110400:three_prime_UTR 30.0%
TCACGTTAAAAATTATCCGA+GGG - chr1_3:23246842-23246861 None:intergenic 30.0%
ATCACGTTAAAAATTATCCG+AGG - chr1_3:23246843-23246862 None:intergenic 30.0%
TGTCTAACAACAAAAATTCC+TGG - chr1_3:23246905-23246924 None:intergenic 30.0%
!!! GAAATTAGGGTTTTGGGTTT+TGG - chr1_3:23236395-23236414 None:intergenic 35.0%
! CGAAGAAGAAATTAGGGTTT+TGG - chr1_3:23236402-23236421 None:intergenic 35.0%
GGTTGACGAAGAAGAAATTA+GGG - chr1_3:23236408-23236427 None:intergenic 35.0%
TGGTTGACGAAGAAGAAATT+AGG - chr1_3:23236409-23236428 None:intergenic 35.0%
GAAACGAAAGAAGAGAATAG+AGG - chr1_3:23236461-23236480 None:intergenic 35.0%
! AATAGTAGTTTAGGGTAGAG+AGG + chr1_3:23236690-23236709 Msa0110400:intron 35.0%
! TTTAGGGTAGAGAGGTAATT+TGG + chr1_3:23236698-23236717 Msa0110400:intron 35.0%
TTAGGGTAGAGAGGTAATTT+GGG + chr1_3:23236699-23236718 Msa0110400:intron 35.0%
AGGTAATTTGGGAATCGTAA+TGG + chr1_3:23236710-23236729 Msa0110400:intron 35.0%
! TAATTAGGGATTAGCGTGTT+AGG + chr1_3:23236780-23236799 Msa0110400:intron 35.0%
! AATTAGGGATTAGCGTGTTA+GGG + chr1_3:23236781-23236800 Msa0110400:intron 35.0%
! GTGAGTGTCTTTTGGTATTA+GGG + chr1_3:23236877-23236896 Msa0110400:intron 35.0%
CAAAAATAAGCCAGTCCAAA+TGG - chr1_3:23236904-23236923 None:intergenic 35.0%
! AGGGTATTATAGTGGAAATC+AGG + chr1_3:23237156-23237175 Msa0110400:intron 35.0%
TTAGGGTAGCATGGTAATTT+GGG + chr1_3:23237210-23237229 Msa0110400:intron 35.0%
!! CATTTTGGGTGGAAAATGTT+TGG + chr1_3:23237275-23237294 Msa0110400:intron 35.0%
!!! CGGCAATTCGAAGTTTTAAA+TGG + chr1_3:23237473-23237492 Msa0110400:intron 35.0%
TTAGTTATACAACCCATGAC+TGG + chr1_3:23237499-23237518 Msa0110400:intron 35.0%
AAGTCCAAAATTCCAGTCAT+GGG - chr1_3:23237514-23237533 None:intergenic 35.0%
AAAGTCCAAAATTCCAGTCA+TGG - chr1_3:23237515-23237534 None:intergenic 35.0%
! AATATTTAAGGCGAGACATG+TGG + chr1_3:23237554-23237573 Msa0110400:intron 35.0%
!! CCGACTTTTGTATTGGTATT+AGG + chr1_3:23237594-23237613 Msa0110400:intron 35.0%
TTAGGAGATGTGAAAGCTAA+AGG + chr1_3:23237612-23237631 Msa0110400:intron 35.0%
GTGAAAGCTAAAGGCTAATT+TGG + chr1_3:23237621-23237640 Msa0110400:intron 35.0%
TTGGTGAATGAAAGAAAGTG+GGG + chr1_3:23237701-23237720 Msa0110400:intron 35.0%
AATTCCGAAATTCCAGTCAT+CGG - chr1_3:23237863-23237882 None:intergenic 35.0%
!!! CAAATCACATTTTGGCTGTT+CGG - chr1_3:23237991-23238010 None:intergenic 35.0%
! TTTTATTGGGGTCTGGTTAT+TGG - chr1_3:23238164-23238183 None:intergenic 35.0%
! TGTCGATAGGCATTTTATTG+GGG - chr1_3:23238176-23238195 None:intergenic 35.0%
TGGATAAATAAGGGATCTGA+AGG - chr1_3:23238203-23238222 None:intergenic 35.0%
ACAATATCATCCAGAGTAAG+CGG - chr1_3:23238850-23238869 None:intergenic 35.0%
TTGAGTGTGCAGTTTATAAG+TGG + chr1_3:23238926-23238945 Msa0110400:intron 35.0%
TTGTTCCAGGAATTTAATGG+TGG + chr1_3:23239196-23239215 Msa0110400:intron 35.0%
AGAAACCACCATTAAATTCC+TGG - chr1_3:23239204-23239223 None:intergenic 35.0%
TTTCCTGACAAATACTTGGA+AGG + chr1_3:23239234-23239253 Msa0110400:intron 35.0%
ATTCCTTCCAAGTATTTGTC+AGG - chr1_3:23239240-23239259 None:intergenic 35.0%
CATCCCATTCCTATAAATGA+GGG - chr1_3:23239308-23239327 None:intergenic 35.0%
CTCATTTATAGGAATGGGAT+GGG + chr1_3:23239307-23239326 Msa0110400:intron 35.0%
TTCTACAGTTATGTCCCAAT+TGG + chr1_3:23239444-23239463 Msa0110400:intron 35.0%
GCAAACATATTCCACCAATT+GGG - chr1_3:23239461-23239480 None:intergenic 35.0%
TGCAAACATATTCCACCAAT+TGG - chr1_3:23239462-23239481 None:intergenic 35.0%
ATATGTTTGCAGCCTAAAAC+CGG + chr1_3:23239471-23239490 Msa0110400:intron 35.0%
GGTTTCTTGTAAGATTCGAT+TGG + chr1_3:23239523-23239542 Msa0110400:intron 35.0%
CGTACATTATCATGTTGTGA+TGG - chr1_3:23239634-23239653 None:intergenic 35.0%
TTTGGGGATTGTAAACTCAA+GGG - chr1_3:23239671-23239690 None:intergenic 35.0%
AAAGCTAAGAGATATAGACC+AGG - chr1_3:23239698-23239717 None:intergenic 35.0%
CATTGGGAAGCAAAAATGAT+TGG - chr1_3:23240200-23240219 None:intergenic 35.0%
GGTTGCACAAAACATAACAT+TGG - chr1_3:23240217-23240236 None:intergenic 35.0%
CAAGATTGGGAAGAAAATGA+TGG - chr1_3:23240362-23240381 None:intergenic 35.0%
AATCGATTGGGAACAAGATT+GGG - chr1_3:23240375-23240394 None:intergenic 35.0%
AAATCGATTGGGAACAAGAT+TGG - chr1_3:23240376-23240395 None:intergenic 35.0%
ATCATATCATACGCACCAAA+CGG + chr1_3:23240575-23240594 Msa0110400:intron 35.0%
CGCATAAATGAGAACCTTAA+GGG - chr1_3:23240602-23240621 None:intergenic 35.0%
TCGCATAAATGAGAACCTTA+AGG - chr1_3:23240603-23240622 None:intergenic 35.0%
TCTTCATGTTACAATTCGTC+AGG + chr1_3:23241025-23241044 Msa0110400:intron 35.0%
CTTCATGTTACAATTCGTCA+GGG + chr1_3:23241026-23241045 Msa0110400:intron 35.0%
GACAAAGGAAATGTGAAAGA+TGG + chr1_3:23241298-23241317 Msa0110400:intron 35.0%
AGAAATTATGCCAGTAAGAG+AGG + chr1_3:23241351-23241370 Msa0110400:intron 35.0%
GAAATTATGCCAGTAAGAGA+GGG + chr1_3:23241352-23241371 Msa0110400:intron 35.0%
AAATTATGCCAGTAAGAGAG+GGG + chr1_3:23241353-23241372 Msa0110400:intron 35.0%
TTGAAATCATTATCAGGCAC+AGG - chr1_3:23241546-23241565 None:intergenic 35.0%
CAAGAATTAACAGCACATAG+GGG - chr1_3:23241900-23241919 None:intergenic 35.0%
GCAAGAATTAACAGCACATA+GGG - chr1_3:23241901-23241920 None:intergenic 35.0%
GGATGTAATTTCTTCGCATT+AGG - chr1_3:23241983-23242002 None:intergenic 35.0%
AATGCGAAGAAATTACATCC+TGG + chr1_3:23241983-23242002 Msa0110400:CDS 35.0%
AAGTGTATCAAGTTTCGCAA+TGG + chr1_3:23242107-23242126 Msa0110400:intron 35.0%
CTTGTTTGTGACATGTTCTA+TGG + chr1_3:23242222-23242241 Msa0110400:intron 35.0%
!!! TGCTAGTTTTGTTTAAGGGA+TGG - chr1_3:23242314-23242333 None:intergenic 35.0%
AAACTAATGTGCAATGACTG+AGG + chr1_3:23242504-23242523 Msa0110400:intron 35.0%
TGCGATTATGTCCTGTAAAA+CGG - chr1_3:23242541-23242560 None:intergenic 35.0%
!!! AAGGTCGGTCTTATTTTAGT+TGG + chr1_3:23242642-23242661 Msa0110400:intron 35.0%
!! TTACCTACCAAAAGCATTAC+AGG - chr1_3:23242708-23242727 None:intergenic 35.0%
ACAAGGAATGTAGCAATACA+TGG - chr1_3:23242915-23242934 None:intergenic 35.0%
AAAACACAATTGGTTGTGTC+TGG - chr1_3:23242943-23242962 None:intergenic 35.0%
TGCATCATGCAAAACACAAT+TGG - chr1_3:23242953-23242972 None:intergenic 35.0%
CACATATAAATTCACAGGTC+TGG - chr1_3:23242982-23243001 None:intergenic 35.0%
CAACAGACACATCTATTATG+GGG - chr1_3:23243072-23243091 None:intergenic 35.0%
TGTTGAATGTCATTCTCACT+TGG + chr1_3:23243087-23243106 Msa0110400:intron 35.0%
!! TGTAGTTTTGCATTCCCTAA+TGG + chr1_3:23243148-23243167 Msa0110400:intron 35.0%
TAACTGCAAACAGATCTTGA+AGG + chr1_3:23243241-23243260 Msa0110400:CDS 35.0%
TCGTAGAGAGATGATAGTTA+TGG + chr1_3:23243399-23243418 Msa0110400:intron 35.0%
TTATCCTACTTGTACTAGGT+GGG - chr1_3:23243451-23243470 None:intergenic 35.0%
TTTATCCTACTTGTACTAGG+TGG - chr1_3:23243452-23243471 None:intergenic 35.0%
TAATGAGTATCCTTGGATTG+TGG + chr1_3:23243877-23243896 Msa0110400:intron 35.0%
!!! AGTGCATGTTTGTTTTGCAT+TGG - chr1_3:23244091-23244110 None:intergenic 35.0%
ACTTCTTATCTGGTACAGAA+TGG - chr1_3:23244270-23244289 None:intergenic 35.0%
AGGATTGAGAACTTCTTATC+TGG - chr1_3:23244280-23244299 None:intergenic 35.0%
TCAAGAGATCTATCCAATCT+AGG - chr1_3:23244460-23244479 None:intergenic 35.0%
! TTGCTATTCTTGACTATCTG+AGG + chr1_3:23244767-23244786 Msa0110400:intron 35.0%
TGCTATTCTTGACTATCTGA+GGG + chr1_3:23244768-23244787 Msa0110400:intron 35.0%
TATGAGAGAAACATAACTGG+CGG - chr1_3:23244833-23244852 None:intergenic 35.0%
GTGTATGAGAGAAACATAAC+TGG - chr1_3:23244836-23244855 None:intergenic 35.0%
! ATTTGCCTTTCCAACTTTTC+AGG + chr1_3:23244883-23244902 Msa0110400:intron 35.0%
! CAAAGTAATTATTGGTGGCA+TGG - chr1_3:23244925-23244944 None:intergenic 35.0%
!!! CTTGTGGAATAGTTTTGTAG+AGG + chr1_3:23245062-23245081 Msa0110400:intron 35.0%
!! AGAGGTGTCTAAAAGAATAC+GGG + chr1_3:23245080-23245099 Msa0110400:intron 35.0%
AGTTCCAAGAATAAGACCAT+CGG - chr1_3:23245286-23245305 None:intergenic 35.0%
CAGATTCTCTTGTTAAGATC+TGG + chr1_3:23245313-23245332 Msa0110400:CDS 35.0%
GCAAATGTTGCTAAGTTTGA+TGG + chr1_3:23245451-23245470 Msa0110400:CDS 35.0%
! CTAAGTTTGATGGACATGTT+GGG + chr1_3:23245461-23245480 Msa0110400:CDS 35.0%
!! GCAATATCCTTTTCTGAGAA+TGG + chr1_3:23245493-23245512 Msa0110400:CDS 35.0%
TGAGAATGGATATTACCTTG+CGG + chr1_3:23245507-23245526 Msa0110400:CDS 35.0%
! TCATGATGGTGTAAAGCTTT+GGG + chr1_3:23245654-23245673 Msa0110400:CDS 35.0%
! TACGCAAGTTGAAAAACTTC+CGG + chr1_3:23245680-23245699 Msa0110400:CDS 35.0%
TGACTCTCTCTTATTGTCAA+TGG + chr1_3:23245747-23245766 Msa0110400:intron 35.0%
GTCTAGTGTAGAAGAGTTAT+TGG + chr1_3:23245905-23245924 Msa0110400:intron 35.0%
!!! GTTGTTTTTGCATAGCTTAG+GGG + chr1_3:23246045-23246064 Msa0110400:intron 35.0%
TACCCAAATACCCTTTAGAT+TGG + chr1_3:23246177-23246196 Msa0110400:intron 35.0%
TCAAGGAAAGACTAATGGAA+TGG - chr1_3:23246255-23246274 None:intergenic 35.0%
AATATCCTGCATAAAGTAGC+AGG - chr1_3:23246292-23246311 None:intergenic 35.0%
ATACTTAGCAGTTGCATCAA+TGG + chr1_3:23246528-23246547 Msa0110400:CDS 35.0%
! TTAGACCAAGCTTTAATAGC+AGG - chr1_3:23246651-23246670 None:intergenic 35.0%
! TAGTTTTCCTTCACATACCA+TGG + chr1_3:23246721-23246740 Msa0110400:three_prime_UTR 35.0%
ACAAAAATTCCTGGTAGCAA+TGG - chr1_3:23246896-23246915 None:intergenic 35.0%
!! CTTGTTAACTTGTAGTGTAC+TGG + chr1_3:23246946-23246965 Msa0110400:three_prime_UTR 35.0%
! GTAGTGTACTGGTGATAATA+TGG + chr1_3:23246957-23246976 Msa0110400:three_prime_UTR 35.0%
! TGTACTGGTGATAATATGGA+AGG + chr1_3:23246961-23246980 Msa0110400:three_prime_UTR 35.0%
TCGAGAAGAGATTAATCGAG+AGG + chr1_3:23236606-23236625 Msa0110400:CDS 40.0%
TGTTAGGGTTGAGGGTAATT+TGG + chr1_3:23236796-23236815 Msa0110400:intron 40.0%
GTTAGGGTTGAGGGTAATTT+GGG + chr1_3:23236797-23236816 Msa0110400:intron 40.0%
TGAGGGTAATTTGGGAATAG+TGG + chr1_3:23236805-23236824 Msa0110400:intron 40.0%
! GGTGAGTGTCTTTTGGTATT+AGG + chr1_3:23236876-23236895 Msa0110400:intron 40.0%
! TTTTGGTATTAGGGCCCATT+TGG + chr1_3:23236886-23236905 Msa0110400:intron 40.0%
AACTAAACTATGGGCCTGTT+TGG - chr1_3:23237097-23237116 None:intergenic 40.0%
! TATAGTGGAAATCAGGAGTG+TGG + chr1_3:23237163-23237182 Msa0110400:intron 40.0%
GTTAGGGTAGCATGGTAATT+TGG + chr1_3:23237209-23237228 Msa0110400:intron 40.0%
!! ACTCGGTGTAAAACATGAGT+CGG - chr1_3:23237391-23237410 None:intergenic 40.0%
TTGCCGACAACTATGAAACA+TGG - chr1_3:23237459-23237478 None:intergenic 40.0%
! ACAACCCATGACTGGAATTT+TGG + chr1_3:23237507-23237526 Msa0110400:intron 40.0%
!!! CTGGATACCGACTTTTGTAT+TGG + chr1_3:23237587-23237606 Msa0110400:intron 40.0%
!! AAGATAGCACCGATACAACA+AGG - chr1_3:23237681-23237700 None:intergenic 40.0%
!!! GTTGTATCGGTGCTATCTTT+TGG + chr1_3:23237682-23237701 Msa0110400:intron 40.0%
! CGTAGCATGTTTGAAGTTTG+AGG + chr1_3:23237746-23237765 Msa0110400:intron 40.0%
! AGCATGTTTGAAGTTTGAGG+TGG + chr1_3:23237749-23237768 Msa0110400:intron 40.0%
TTAGTTACACAACCGATGAC+TGG + chr1_3:23237848-23237867 Msa0110400:intron 40.0%
ACAACCGATGACTGGAATTT+CGG + chr1_3:23237856-23237875 Msa0110400:intron 40.0%
!! TCTGTTTCTATGTTCGGTAC+CGG - chr1_3:23238028-23238047 None:intergenic 40.0%
GATTACACAATAGGTTCCCA+AGG + chr1_3:23238082-23238101 Msa0110400:intron 40.0%
CCAAGACTCTCAAATTCCTT+GGG - chr1_3:23238101-23238120 None:intergenic 40.0%
CCAAGGAATTTGAGAGTCTT+GGG + chr1_3:23238099-23238118 Msa0110400:intron 40.0%
! ATAGGCATTTTATTGGGGTC+TGG - chr1_3:23238171-23238190 None:intergenic 40.0%
ATCTGAAGGACAATGTCGAT+AGG - chr1_3:23238189-23238208 None:intergenic 40.0%
TTTATTCACAGCGAATCGTG+TGG + chr1_3:23238618-23238637 Msa0110400:intron 40.0%
! GATATTGTGCCGATCAAAAC+AGG + chr1_3:23238862-23238881 Msa0110400:CDS 40.0%
!!! CATACCTTGCCTGTTTTGAT+CGG - chr1_3:23238874-23238893 None:intergenic 40.0%
TCAAAACAGGCAAGGTATGT+TGG + chr1_3:23238875-23238894 Msa0110400:intron 40.0%
CCATCCCATTCCTATAAATG+AGG - chr1_3:23239309-23239328 None:intergenic 40.0%
CCTCATTTATAGGAATGGGA+TGG + chr1_3:23239306-23239325 Msa0110400:intron 40.0%
GTTAAGTCATGCTCTATACC+AGG + chr1_3:23239383-23239402 Msa0110400:CDS 40.0%
TCATGCTCTATACCAGGTAA+GGG + chr1_3:23239389-23239408 Msa0110400:intron 40.0%
TACAGTTATGTCCCAATTGG+TGG + chr1_3:23239447-23239466 Msa0110400:intron 40.0%
TATGTTTGCAGCCTAAAACC+GGG + chr1_3:23239472-23239491 Msa0110400:intron 40.0%
GTTTGGGGATTGTAAACTCA+AGG - chr1_3:23239672-23239691 None:intergenic 40.0%
ATATAGACCAGGAAGGTTTG+GGG - chr1_3:23239687-23239706 None:intergenic 40.0%
GATATAGACCAGGAAGGTTT+GGG - chr1_3:23239688-23239707 None:intergenic 40.0%
AGATATAGACCAGGAAGGTT+TGG - chr1_3:23239689-23239708 None:intergenic 40.0%
CTAAGAGATATAGACCAGGA+AGG - chr1_3:23239694-23239713 None:intergenic 40.0%
TGCTAACCCACCAAAAACTA+AGG - chr1_3:23239868-23239887 None:intergenic 40.0%
AGAGGTTTACTGAGGAATAG+AGG - chr1_3:23239922-23239941 None:intergenic 40.0%
GTGCAACAGCCAAATTGATT+GGG - chr1_3:23240071-23240090 None:intergenic 40.0%
TGTGCAACAGCCAAATTGAT+TGG - chr1_3:23240072-23240091 None:intergenic 40.0%
TTTGGCTGTTGCACATGAAT+TGG + chr1_3:23240077-23240096 Msa0110400:intron 40.0%
!! GTTTTGTGCAACCGATTTTC+TGG + chr1_3:23240224-23240243 Msa0110400:intron 40.0%
ATCCCAGTATGCGATTTGTA+GGG - chr1_3:23240985-23241004 None:intergenic 40.0%
AATCCCAGTATGCGATTTGT+AGG - chr1_3:23240986-23241005 None:intergenic 40.0%
GGGATTTGTGTTCATGTTCA+CGG + chr1_3:23241000-23241019 Msa0110400:intron 40.0%
! GCCTTCTAAGAGTAATCGAA+GGG + chr1_3:23241080-23241099 Msa0110400:intron 40.0%
TCCCTTCGATTACTCTTAGA+AGG - chr1_3:23241084-23241103 None:intergenic 40.0%
TAAGAGTAATCGAAGGGAGA+AGG + chr1_3:23241086-23241105 Msa0110400:intron 40.0%
AAGAGTAATCGAAGGGAGAA+GGG + chr1_3:23241087-23241106 Msa0110400:intron 40.0%
GAGTCTGTTCTCACTGAAAA+AGG + chr1_3:23241122-23241141 Msa0110400:intron 40.0%
CAACTAAGTACAGGTGAAGT+TGG + chr1_3:23241229-23241248 Msa0110400:intron 40.0%
!!! TGGCGAGAAGTTTTTTTGGA+CGG + chr1_3:23241264-23241283 Msa0110400:intron 40.0%
! ACGGGAAAGATTGATGACAA+AGG + chr1_3:23241283-23241302 Msa0110400:intron 40.0%
AATTATGCCAGTAAGAGAGG+GGG + chr1_3:23241354-23241373 Msa0110400:intron 40.0%
TTTCTCCAACTGTTCTTTCC+TGG + chr1_3:23241496-23241515 Msa0110400:intron 40.0%
TCATACCAGGAAAGAACAGT+TGG - chr1_3:23241504-23241523 None:intergenic 40.0%
! TTTTAAGCCTTGCAATCACG+CGG - chr1_3:23241652-23241671 None:intergenic 40.0%
CGTGATTGCAAGGCTTAAAA+AGG + chr1_3:23241652-23241671 Msa0110400:CDS 40.0%
GCATTAGCTGTCACAGAATT+TGG - chr1_3:23241737-23241756 None:intergenic 40.0%
AATGCTCCTGTTCATAGCAA+TGG + chr1_3:23241752-23241771 Msa0110400:CDS 40.0%
ATGCTCCTGTTCATAGCAAT+GGG + chr1_3:23241753-23241772 Msa0110400:CDS 40.0%
! CTTTTCCCATTGCTATGAAC+AGG - chr1_3:23241761-23241780 None:intergenic 40.0%
GTTCATAGCAATGGGAAAAG+AGG + chr1_3:23241761-23241780 Msa0110400:CDS 40.0%
CGCAAGAATTAACAGCACAT+AGG - chr1_3:23241902-23241921 None:intergenic 40.0%
CACACACACACACACATTAA+TGG + chr1_3:23242186-23242205 Msa0110400:intron 40.0%
ATTTCAGATTCCTGCGACTT+TGG + chr1_3:23242248-23242267 Msa0110400:intron 40.0%
TTACAGGACATAATCGCAAC+TGG + chr1_3:23242543-23242562 Msa0110400:intron 40.0%
!!! GTTATTTTTGACCGTCCATC+AGG + chr1_3:23242585-23242604 Msa0110400:CDS 40.0%
CTAATACTTGTCCTGATGGA+CGG - chr1_3:23242599-23242618 None:intergenic 40.0%
GTAGCTAATACTTGTCCTGA+TGG - chr1_3:23242603-23242622 None:intergenic 40.0%
CAAGTATTAGCTACACTCAG+CGG + chr1_3:23242609-23242628 Msa0110400:CDS 40.0%
! TAGCTGACCTGTAATGCTTT+TGG + chr1_3:23242698-23242717 Msa0110400:intron 40.0%
! TGACCTGTAATGCTTTTGGT+AGG + chr1_3:23242702-23242721 Msa0110400:intron 40.0%
GTAACAAGCGTGAAGTTTGT+AGG + chr1_3:23242724-23242743 Msa0110400:CDS 40.0%
CAGGGTGAATCTATCATAAC+TGG + chr1_3:23242748-23242767 Msa0110400:CDS 40.0%
! CATAACTGGTTCAGCAGATA+AGG + chr1_3:23242762-23242781 Msa0110400:CDS 40.0%
TATTGCAGACAGTTCGTTTG+TGG + chr1_3:23243195-23243214 Msa0110400:intron 40.0%
TATCCTACTTGTACTAGGTG+GGG - chr1_3:23243450-23243469 None:intergenic 40.0%
!! TTTTTGAGGACTTCACCTCT+TGG - chr1_3:23243584-23243603 None:intergenic 40.0%
AAGAGGTGAAGTCCTCAAAA+AGG + chr1_3:23243583-23243602 Msa0110400:intron 40.0%
! CTTTTCAATTTCACTTCCCC+TGG + chr1_3:23243609-23243628 Msa0110400:intron 40.0%
TTAAGGAGGAATGAGGAAGT+GGG - chr1_3:23243654-23243673 None:intergenic 40.0%
TAAGGAGTTAAGGAGGAATG+AGG - chr1_3:23243661-23243680 None:intergenic 40.0%
ATGTGATCGAACTCAATGTG+CGG - chr1_3:23243818-23243837 None:intergenic 40.0%
AACAGTCGTAGATTATGTCG+TGG + chr1_3:23243839-23243858 Msa0110400:intron 40.0%
ACAGTCGTAGATTATGTCGT+GGG + chr1_3:23243840-23243859 Msa0110400:intron 40.0%
! ATAGCTTTTGCCACAATCCA+AGG - chr1_3:23243890-23243909 None:intergenic 40.0%
GTAAGTGGTCTAATTGGCAT+AGG - chr1_3:23243922-23243941 None:intergenic 40.0%
GTCAAGGTCAATATGGTAAG+TGG - chr1_3:23243937-23243956 None:intergenic 40.0%
CCAACATGTCAAGGTCAATA+TGG - chr1_3:23243944-23243963 None:intergenic 40.0%
CCATATTGACCTTGACATGT+TGG + chr1_3:23243941-23243960 Msa0110400:intron 40.0%
ACTATTTGACCAGGGTAAAG+AGG - chr1_3:23244212-23244231 None:intergenic 40.0%
TGTACGCAACTATTTGACCA+GGG - chr1_3:23244220-23244239 None:intergenic 40.0%
CCTAGCAGTCAAGAGTTTAT+GGG - chr1_3:23244403-23244422 None:intergenic 40.0%
ACCTAGCAGTCAAGAGTTTA+TGG - chr1_3:23244404-23244423 None:intergenic 40.0%
! AACTCTTGACTGCTAGGTTT+TGG + chr1_3:23244406-23244425 Msa0110400:intron 40.0%
! ATCTATCCAATCTAGGACTG+GGG - chr1_3:23244453-23244472 None:intergenic 40.0%
! GATCTATCCAATCTAGGACT+GGG - chr1_3:23244454-23244473 None:intergenic 40.0%
! AGATCTATCCAATCTAGGAC+TGG - chr1_3:23244455-23244474 None:intergenic 40.0%
CTAACTCATCCTTGCAAAAC+TGG - chr1_3:23244521-23244540 None:intergenic 40.0%
! CAGTTTTGCAAGGATGAGTT+AGG + chr1_3:23244519-23244538 Msa0110400:intron 40.0%
GGATGTACGACTTACTAAAG+AGG - chr1_3:23244597-23244616 None:intergenic 40.0%
AACATAACTGGCGGGAAATA+AGG - chr1_3:23244824-23244843 None:intergenic 40.0%
ATGAGAGAAACATAACTGGC+GGG - chr1_3:23244832-23244851 None:intergenic 40.0%
TTCCACCTGAAAAGTTGGAA+AGG - chr1_3:23244891-23244910 None:intergenic 40.0%
TTTGTGACTGCATCACTTGA+TGG + chr1_3:23244941-23244960 Msa0110400:CDS 40.0%
! GAGGTGTCTAAAAGAATACG+GGG + chr1_3:23245081-23245100 Msa0110400:intron 40.0%
TCATTGTCAACTCAGCACTT+AGG - chr1_3:23245206-23245225 None:intergenic 40.0%
! GTGCTGAGTTGACAATGATT+TGG + chr1_3:23245208-23245227 Msa0110400:intron 40.0%
GTTCCAAGAATAAGACCATC+GGG - chr1_3:23245285-23245304 None:intergenic 40.0%
!! GATGGTCTTATTCTTGGAAC+TGG + chr1_3:23245285-23245304 Msa0110400:CDS 40.0%
! GATCTGGGATGTAAAAAGTC+AGG + chr1_3:23245329-23245348 Msa0110400:CDS 40.0%
! GCTAAGTTTGATGGACATGT+TGG + chr1_3:23245460-23245479 Msa0110400:CDS 40.0%
!!! CATTTTTTTCACGTACCGCA+AGG - chr1_3:23245525-23245544 None:intergenic 40.0%
! CTCATGATGGTGTAAAGCTT+TGG + chr1_3:23245653-23245672 Msa0110400:CDS 40.0%
! ACGCAAGTTGAAAAACTTCC+GGG + chr1_3:23245681-23245700 Msa0110400:CDS 40.0%
TTGAAAAACTTCCGGGACTA+TGG + chr1_3:23245688-23245707 Msa0110400:CDS 40.0%
TTGGAGTTGCTGAGTCATAT+GGG - chr1_3:23245714-23245733 None:intergenic 40.0%
GAGTCAATACCAGAGTTTGT+TGG - chr1_3:23245733-23245752 None:intergenic 40.0%
!! TTGTACCTGCTACTTTATGC+AGG + chr1_3:23246284-23246303 Msa0110400:intron 40.0%
! CTTCCTGATTTATCTGGAAC+AGG + chr1_3:23246355-23246374 Msa0110400:CDS 40.0%
GTACCTGTTCCAGATAAATC+AGG - chr1_3:23246361-23246380 None:intergenic 40.0%
ATACTAGATGTGTATGGTGC+AGG - chr1_3:23246422-23246441 None:intergenic 40.0%
GACCGGAATCTTCGAATATT+TGG + chr1_3:23246550-23246569 Msa0110400:CDS 40.0%
GGCCAAATATTCGAAGATTC+CGG - chr1_3:23246555-23246574 None:intergenic 40.0%
TTGTCAGAAATATCTTCGCC+AGG - chr1_3:23246580-23246599 None:intergenic 40.0%
ACATACACCATGGTATGTGA+AGG - chr1_3:23246731-23246750 None:intergenic 40.0%
TTCACATACCATGGTGTATG+TGG + chr1_3:23246730-23246749 Msa0110400:three_prime_UTR 40.0%
!!! TGGGTTTTGGAGAAGAGAGA+GGG - chr1_3:23236382-23236401 None:intergenic 45.0%
!!! TTGGGTTTTGGAGAAGAGAG+AGG - chr1_3:23236383-23236402 None:intergenic 45.0%
TTAACTGGAGCAGTTCATCG+TGG - chr1_3:23236429-23236448 None:intergenic 45.0%
!!! GTTTTTTGCAGTTTCCGGTG+AGG + chr1_3:23236541-23236560 Msa0110400:intron 45.0%
! CTGTGGTGTCAAAAAGCTCT+GGG + chr1_3:23236576-23236595 Msa0110400:CDS 45.0%
GATTAGCGTGTTAGGGTTGA+GGG + chr1_3:23236788-23236807 Msa0110400:intron 45.0%
AACTATGGGCCTGTTTGGAT+TGG - chr1_3:23237092-23237111 None:intergenic 45.0%
! ACAGCTTCGATCAGAAGTGT+CGG - chr1_3:23237359-23237378 None:intergenic 45.0%
TGTATTGTCGTCGTTGTGTG+TGG + chr1_3:23237430-23237449 Msa0110400:intron 45.0%
! GACATGTGGTTCTTTGGTTC+TGG + chr1_3:23237568-23237587 Msa0110400:intron 45.0%
CCCAAGGAATTTGAGAGTCT+TGG + chr1_3:23238098-23238117 Msa0110400:intron 45.0%
CCCAAGACTCTCAAATTCCT+TGG - chr1_3:23238102-23238121 None:intergenic 45.0%
CAAGCTCTCGAATTCTTGGA+GGG - chr1_3:23238130-23238149 None:intergenic 45.0%
AGACCAAGCTCTCGAATTCT+TGG - chr1_3:23238134-23238153 None:intergenic 45.0%
! TTGGGGTCTGGTTATTGGTT+GGG - chr1_3:23238159-23238178 None:intergenic 45.0%
ATTGGGGTCTGGTTATTGGT+TGG - chr1_3:23238160-23238179 None:intergenic 45.0%
!! TTTGGGAAGTGTCCAGTTAC+AGG + chr1_3:23238820-23238839 Msa0110400:CDS 45.0%
! CAGGCAAGGTATGTTGGTAA+TGG + chr1_3:23238881-23238900 Msa0110400:intron 45.0%
AGAACCACGGCTAACATGAA+CGG - chr1_3:23238958-23238977 None:intergenic 45.0%
GTCATGCTCTATACCAGGTA+AGG + chr1_3:23239388-23239407 Msa0110400:intron 45.0%
TTACAATCCCCAAACCTTCC+TGG + chr1_3:23239677-23239696 Msa0110400:intron 45.0%
!! CTTAGCTTTTACGGCCTGTT+TGG + chr1_3:23239709-23239728 Msa0110400:intron 45.0%
TCCTGCTTAAATCCGTTGCT+TGG + chr1_3:23239772-23239791 Msa0110400:intron 45.0%
CCTGCTTAAATCCGTTGCTT+GGG + chr1_3:23239773-23239792 Msa0110400:intron 45.0%
GAGTCGAAAGAGGTTTACTG+AGG - chr1_3:23239930-23239949 None:intergenic 45.0%
TAGAAGCAGAGAGTCGAAAG+AGG - chr1_3:23239940-23239959 None:intergenic 45.0%
CTATCATGTGTTTGGCGCAA+AGG - chr1_3:23240436-23240455 None:intergenic 45.0%
GTGTGCACCAAACACATGAT+AGG + chr1_3:23240487-23240506 Msa0110400:intron 45.0%
GTAGGGAGAGTGACTGAATT+TGG - chr1_3:23240968-23240987 None:intergenic 45.0%
TCTCCCTACAAATCGCATAC+TGG + chr1_3:23240979-23240998 Msa0110400:intron 45.0%
CTCCCTACAAATCGCATACT+GGG + chr1_3:23240980-23240999 Msa0110400:intron 45.0%
ATTCGTCAGGGAAGATGTGT+TGG + chr1_3:23241038-23241057 Msa0110400:intron 45.0%
TTCGTCAGGGAAGATGTGTT+GGG + chr1_3:23241039-23241058 Msa0110400:intron 45.0%
GGAAGATGTGTTGGGAGTTT+GGG + chr1_3:23241047-23241066 Msa0110400:intron 45.0%
GAAGATGTGTTGGGAGTTTG+GGG + chr1_3:23241048-23241067 Msa0110400:intron 45.0%
CGATTACTCTTAGAAGGCCA+AGG - chr1_3:23241078-23241097 None:intergenic 45.0%
! GGCCTTCTAAGAGTAATCGA+AGG + chr1_3:23241079-23241098 Msa0110400:intron 45.0%
AGGGAGAAGGGAAAATGAGA+AGG + chr1_3:23241099-23241118 Msa0110400:intron 45.0%
GGGAGAAGGGAAAATGAGAA+GGG + chr1_3:23241100-23241119 Msa0110400:intron 45.0%
!!! GGCGAGAAGTTTTTTTGGAC+GGG + chr1_3:23241265-23241284 Msa0110400:intron 45.0%
AAAAGGAACGAGACGAAGCT+AGG + chr1_3:23241669-23241688 Msa0110400:CDS 45.0%
AGCTAGGTCTATACTTGCAC+AGG + chr1_3:23241685-23241704 Msa0110400:CDS 45.0%
CTATACTTGCACAGGCAGAA+AGG + chr1_3:23241693-23241712 Msa0110400:CDS 45.0%
GCACATAGGGGAAGCTATTA+AGG - chr1_3:23241888-23241907 None:intergenic 45.0%
!!! TGTTTTAGCTGCTGATGACG+AGG + chr1_3:23241949-23241968 Msa0110400:intron 45.0%
! ACTCAGCGGTCACTCTAAAA+AGG + chr1_3:23242623-23242642 Msa0110400:CDS 45.0%
! AGCGGTCACTCTAAAAAGGT+CGG + chr1_3:23242627-23242646 Msa0110400:intron 45.0%
AAGCGTGAAGTTTGTAGGTC+AGG + chr1_3:23242729-23242748 Msa0110400:CDS 45.0%
AGCGTGAAGTTTGTAGGTCA+GGG + chr1_3:23242730-23242749 Msa0110400:CDS 45.0%
TGGTTTCACAGCTCAGAAGT+TGG + chr1_3:23242821-23242840 Msa0110400:intron 45.0%
!! GTCTGCTCTAAGACGAAAGA+GGG - chr1_3:23242865-23242884 None:intergenic 45.0%
!! TGTCTGCTCTAAGACGAAAG+AGG - chr1_3:23242866-23242885 None:intergenic 45.0%
GGTTGTGTCTGGAGAAAACA+AGG - chr1_3:23242932-23242951 None:intergenic 45.0%
AGACAGTTCGTTTGTGGCAA+GGG + chr1_3:23243201-23243220 Msa0110400:intron 45.0%
TAGGTGGGGTTAACTACATG+TGG - chr1_3:23243436-23243455 None:intergenic 45.0%
TAACCCCACCTAGTACAAGT+AGG + chr1_3:23243444-23243463 Msa0110400:intron 45.0%
CTTCACCTCTTGGATTCTTG+AGG - chr1_3:23243574-23243593 None:intergenic 45.0%
TTAACGGTTCAGAGAACCAG+GGG - chr1_3:23243628-23243647 None:intergenic 45.0%
GTTAACGGTTCAGAGAACCA+GGG - chr1_3:23243629-23243648 None:intergenic 45.0%
ATGAGGAAGTGGGAGGTTAA+CGG - chr1_3:23243644-23243663 None:intergenic 45.0%
GTTAAGGAGGAATGAGGAAG+TGG - chr1_3:23243655-23243674 None:intergenic 45.0%
AACTGTGGAGCAACAGAGTA+GGG - chr1_3:23243711-23243730 None:intergenic 45.0%
TAACTGTGGAGCAACAGAGT+AGG - chr1_3:23243712-23243731 None:intergenic 45.0%
GGAGATATCTCTGACTAAGG+TGG - chr1_3:23243797-23243816 None:intergenic 45.0%
TGCGGAGATATCTCTGACTA+AGG - chr1_3:23243800-23243819 None:intergenic 45.0%
TTATGTCGTGGGATGTCAGT+CGG + chr1_3:23243851-23243870 Msa0110400:intron 45.0%
TCGGGACTAATGAGTATCCT+TGG + chr1_3:23243870-23243889 Msa0110400:intron 45.0%
GCTTTCAACAAGGACTTCAC+AGG - chr1_3:23243967-23243986 None:intergenic 45.0%
!! GAGAATGCTGGCTTTCAACA+AGG - chr1_3:23243977-23243996 None:intergenic 45.0%
AGAGCTGTTTGTGAGAATGC+TGG - chr1_3:23243989-23244008 None:intergenic 45.0%
TAGCAACATCCTCTTTACCC+TGG + chr1_3:23244200-23244219 Msa0110400:intron 45.0%
GTGTACGCAACTATTTGACC+AGG - chr1_3:23244221-23244240 None:intergenic 45.0%
TGGCATGCATTTGATGTGAG+CGG - chr1_3:23244250-23244269 None:intergenic 45.0%
CCCATAAACTCTTGACTGCT+AGG + chr1_3:23244400-23244419 Msa0110400:intron 45.0%
GAAAAACCCCAGTCCTAGAT+TGG + chr1_3:23244444-23244463 Msa0110400:intron 45.0%
!! CAAAACTGGCTTGTAAGGTG+AGG - chr1_3:23244507-23244526 None:intergenic 45.0%
!! CCTTGCAAAACTGGCTTGTA+AGG - chr1_3:23244512-23244531 None:intergenic 45.0%
! CCTTACAAGCCAGTTTTGCA+AGG + chr1_3:23244509-23244528 Msa0110400:intron 45.0%
!! TTGTAGTGAAGGTACTCGAC+TGG - chr1_3:23244618-23244637 None:intergenic 45.0%
!! TGCCTTTCCAACTTTTCAGG+TGG + chr1_3:23244886-23244905 Msa0110400:intron 45.0%
ACAGCTTCCACCTGAAAAGT+TGG - chr1_3:23244896-23244915 None:intergenic 45.0%
TTCAGGAACTTGTCTGACTC+AGG + chr1_3:23244988-23245007 Msa0110400:CDS 45.0%
GGTAGGAAGGAATGCAGTAA+AGG - chr1_3:23245185-23245204 None:intergenic 45.0%
AACTCAGCACTTAGGTAGGA+AGG - chr1_3:23245198-23245217 None:intergenic 45.0%
TGTCAACTCAGCACTTAGGT+AGG - chr1_3:23245202-23245221 None:intergenic 45.0%
TAGGTTTCTGACTCTTCCGA+AGG + chr1_3:23245237-23245256 Msa0110400:intron 45.0%
AGCTGCAGATGTATAGCCTT+CGG - chr1_3:23245256-23245275 None:intergenic 45.0%
!! CATCCCGATGGTCTTATTCT+TGG + chr1_3:23245279-23245298 Msa0110400:CDS 45.0%
CTTTACACCATCATGAGCTG+CGG - chr1_3:23245650-23245669 None:intergenic 45.0%
GTTGGAGTTGCTGAGTCATA+TGG - chr1_3:23245715-23245734 None:intergenic 45.0%
TCAGCAACTCCAACAAACTC+TGG + chr1_3:23245721-23245740 Msa0110400:CDS 45.0%
AGGAGCGGGAAAAATCAAGA+CGG - chr1_3:23246383-23246402 None:intergenic 45.0%
! TGGGCCGAATTTTACACATG+TGG - chr1_3:23246500-23246519 None:intergenic 45.0%
TAGCAGTTGCATCAATGGAC+CGG + chr1_3:23246533-23246552 Msa0110400:CDS 45.0%
CTTCGAATATTTGGCCAACC+TGG + chr1_3:23246559-23246578 Msa0110400:CDS 45.0%
CAGAAATATCTTCGCCAGGT+TGG - chr1_3:23246576-23246595 None:intergenic 45.0%
TGCTGCCTGCTATTAAAGCT+TGG + chr1_3:23246643-23246662 Msa0110400:three_prime_UTR 45.0%
ATACCATGGTGTATGTGGAG+TGG + chr1_3:23246735-23246754 Msa0110400:three_prime_UTR 45.0%
! TCTGAAGTCTGTATTGCCCT+CGG + chr1_3:23246823-23246842 Msa0110400:three_prime_UTR 45.0%
AATTGTTGGCCATTGCTACC+AGG + chr1_3:23246884-23246903 Msa0110400:three_prime_UTR 45.0%
!! TAAATGATAAATTTAATATT+TGG + chr1_3:23241427-23241446 Msa0110400:intron 5.0%
!! AAAAAATAAAATCATTAATA+TGG + chr1_3:23245592-23245611 Msa0110400:intron 5.0%
TTTGACACCACAGGCTCATC+TGG - chr1_3:23236569-23236588 None:intergenic 50.0%
! CCAGAGCTTTTTGACACCAC+AGG - chr1_3:23236578-23236597 None:intergenic 50.0%
! CCTGTGGTGTCAAAAAGCTC+TGG + chr1_3:23236575-23236594 Msa0110400:CDS 50.0%
! GGATTAGCGTGTTAGGGTTG+AGG + chr1_3:23236787-23236806 Msa0110400:intron 50.0%
GTATTAGGGCCCATTTGGAC+TGG + chr1_3:23236891-23236910 Msa0110400:intron 50.0%
! GATGGAGTGTTAGGGTAGCA+TGG + chr1_3:23237201-23237220 Msa0110400:intron 50.0%
!! CAGCTTCGATCAGAAGTGTC+GGG - chr1_3:23237358-23237377 None:intergenic 50.0%
AGGCGAGACATGTGGTTCTT+TGG + chr1_3:23237562-23237581 Msa0110400:intron 50.0%
CCAAGCTCTCGAATTCTTGG+AGG - chr1_3:23238131-23238150 None:intergenic 50.0%
CCTCCAAGAATTCGAGAGCT+TGG + chr1_3:23238128-23238147 Msa0110400:intron 50.0%
! TGTGCCGATCAAAACAGGCA+AGG + chr1_3:23238867-23238886 Msa0110400:CDS 50.0%
TAAGCCGTTCATGTTAGCCG+TGG + chr1_3:23238951-23238970 Msa0110400:intron 50.0%
TGGAACATTCCAAGCATGCC+AGG - chr1_3:23239074-23239093 None:intergenic 50.0%
AGCAGCAGTTGCATACAGCA+AGG + chr1_3:23239355-23239374 Msa0110400:CDS 50.0%
TCTTATCCTGCGCACCAAAC+AGG - chr1_3:23239726-23239745 None:intergenic 50.0%
! CCCAAGCAACGGATTTAAGC+AGG - chr1_3:23239776-23239795 None:intergenic 50.0%
CTACTGATGCACCCAAGCAA+CGG - chr1_3:23239787-23239806 None:intergenic 50.0%
GAGAACCTTAAGGGTCCGTT+TGG - chr1_3:23240593-23240612 None:intergenic 50.0%
GGGAAGATGTGTTGGGAGTT+TGG + chr1_3:23241046-23241065 Msa0110400:intron 50.0%
! TTCAGGTGGTAGTGCTGTAG+TGG + chr1_3:23241381-23241400 Msa0110400:intron 50.0%
! TCAGGTGGTAGTGCTGTAGT+GGG + chr1_3:23241382-23241401 Msa0110400:intron 50.0%
GGCGGCAGATATATAGCAAG+AGG - chr1_3:23241585-23241604 None:intergenic 50.0%
GACTGCAATGCTGCTCTTTC+CGG + chr1_3:23242037-23242056 Msa0110400:CDS 50.0%
ACTGCAATGCTGCTCTTTCC+GGG + chr1_3:23242038-23242057 Msa0110400:CDS 50.0%
!!! CTCTCGCTTTTTCCTCTTCC+CGG - chr1_3:23242059-23242078 None:intergenic 50.0%
TCAACAGAAGCCAAAGTCGC+AGG - chr1_3:23242261-23242280 None:intergenic 50.0%
CAGACAGTTCGTTTGTGGCA+AGG + chr1_3:23243200-23243219 Msa0110400:intron 50.0%
TTGTGGCAAGGGTCAGATGA+TGG + chr1_3:23243212-23243231 Msa0110400:CDS 50.0%
CGACACCTCAAGAATCCAAG+AGG + chr1_3:23243566-23243585 Msa0110400:intron 50.0%
GGTTAACGGTTCAGAGAACC+AGG - chr1_3:23243630-23243649 None:intergenic 50.0%
TATGTCGTGGGATGTCAGTC+GGG + chr1_3:23243852-23243871 Msa0110400:intron 50.0%
CTTCACAGGCCAACATGTCA+AGG - chr1_3:23243953-23243972 None:intergenic 50.0%
GGCATGCATTTGATGTGAGC+GGG - chr1_3:23244249-23244268 None:intergenic 50.0%
! TCTGCAGCTTTTCATCCCGA+TGG + chr1_3:23245267-23245286 Msa0110400:CDS 50.0%
TGATAGACCGCAGCTCATGA+TGG + chr1_3:23245640-23245659 Msa0110400:intron 50.0%
AGTCATATGGGCCATAGTCC+CGG - chr1_3:23245702-23245721 None:intergenic 50.0%
! CAGTTGCAGGCTCTGATGTT+AGG + chr1_3:23245871-23245890 Msa0110400:CDS 50.0%
! TCCATAGTCTTGCCGATCCA+GGG + chr1_3:23246615-23246634 Msa0110400:three_prime_UTR 50.0%
! AGGCTCATCTGGAACCTCAC+CGG - chr1_3:23236558-23236577 None:intergenic 55.0%
TGAGGTTCCAGATGAGCCTG+TGG + chr1_3:23236559-23236578 Msa0110400:CDS 55.0%
GTAAGCGGCTCTCCTGTAAC+TGG - chr1_3:23238835-23238854 None:intergenic 55.0%
TACAGGAGAGCCGCTTACTC+TGG + chr1_3:23238837-23238856 Msa0110400:CDS 55.0%
AGTGAAGCCTAGACCAGTGC+AGG + chr1_3:23239037-23239056 Msa0110400:CDS 55.0%
GCAAGCATTCCTGGCATGCT+TGG + chr1_3:23239062-23239081 Msa0110400:CDS 55.0%
CGTTGCTTGGGTGCATCAGT+AGG + chr1_3:23239785-23239804 Msa0110400:intron 55.0%
ACGCACCAAACGGACCCTTA+AGG + chr1_3:23240585-23240604 Msa0110400:intron 55.0%
ATGCCAGTAAGAGAGGGGGA+TGG + chr1_3:23241358-23241377 Msa0110400:intron 55.0%
GAACCATCCCCCTCTCTTAC+TGG - chr1_3:23241364-23241383 None:intergenic 55.0%
GTAAGAGAGGGGGATGGTTC+AGG + chr1_3:23241364-23241383 Msa0110400:intron 55.0%
! AGCTGCTGATGACGAGGAGT+TGG + chr1_3:23241955-23241974 Msa0110400:intron 55.0%
ATGCTGCTCTTTCCGGGAAG+AGG + chr1_3:23242044-23242063 Msa0110400:CDS 55.0%
CGGGAAGAGGAAAAAGCGAG+AGG + chr1_3:23242057-23242076 Msa0110400:CDS 55.0%
AGGAGGAATGAGGAAGTGGG+AGG - chr1_3:23243651-23243670 None:intergenic 55.0%
! CTGCATCACTTGATGGCAGC+TGG + chr1_3:23244948-23244967 Msa0110400:CDS 55.0%
GCAGTGGAGTTTGACCACAG+TGG + chr1_3:23245837-23245856 Msa0110400:intron 55.0%
CTGCAAGGTAGGATCCACTG+TGG - chr1_3:23245854-23245873 None:intergenic 55.0%
GGATCCTACCTTGCAGTTGC+AGG + chr1_3:23245858-23245877 Msa0110400:CDS 55.0%
AGAGCCTGCAACTGCAAGGT+AGG - chr1_3:23245865-23245884 None:intergenic 55.0%
CATCAGAGCCTGCAACTGCA+AGG - chr1_3:23245869-23245888 None:intergenic 55.0%
! GCAGGCTCTGATGTTAGGTG+AGG + chr1_3:23245876-23245895 Msa0110400:intron 55.0%
! CTCCATAGTCTTGCCGATCC+AGG + chr1_3:23246614-23246633 Msa0110400:three_prime_UTR 55.0%
TCCCTGGATCGGCAAGACTA+TGG - chr1_3:23246619-23246638 None:intergenic 55.0%
GCTCCACTCCACATACACCA+TGG - chr1_3:23246741-23246760 None:intergenic 55.0%
! CTTGCTGCCTGCACTGGTCT+AGG - chr1_3:23239047-23239066 None:intergenic 60.0%
! GGAATGCTTGCTGCCTGCAC+TGG - chr1_3:23239053-23239072 None:intergenic 60.0%
GTGCAGGCAGCAAGCATTCC+TGG + chr1_3:23239053-23239072 Msa0110400:CDS 60.0%
!! TTACGGCCTGTTTGGTGCGC+AGG + chr1_3:23239717-23239736 Msa0110400:intron 60.0%
! TGGGAGTTTGGGGTGCACCT+TGG + chr1_3:23241058-23241077 Msa0110400:intron 60.0%
AGAGAGGGGGATGGTTCAGG+TGG + chr1_3:23241367-23241386 Msa0110400:intron 60.0%
CTGCTTGCCGCGTGATTGCA+AGG + chr1_3:23241642-23241661 Msa0110400:CDS 60.0%
GGCAGCAACTGTCCCTGGAT+CGG - chr1_3:23246630-23246649 None:intergenic 60.0%
TAGCAGGCAGCAACTGTCCC+TGG - chr1_3:23246635-23246654 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 23236325 23246991 23236325 ID=Msa0110400;Name=Msa0110400
chr1_3 mRNA 23236325 23246991 23236325 ID=Msa0110400-mRNA-1;Parent=Msa0110400;Name=Msa0110400-mRNA-1;_AED=0.09;_eAED=0.09;_QI=106|0.94|0.94|1|0.94|0.94|18|385|547
chr1_3 exon 23236325 23236443 23236325 ID=Msa0110400-mRNA-1:exon:8129;Parent=Msa0110400-mRNA-1
chr1_3 exon 23236552 23236637 23236552 ID=Msa0110400-mRNA-1:exon:8130;Parent=Msa0110400-mRNA-1
chr1_3 exon 23238817 23238888 23238817 ID=Msa0110400-mRNA-1:exon:8131;Parent=Msa0110400-mRNA-1
chr1_3 exon 23239035 23239097 23239035 ID=Msa0110400-mRNA-1:exon:8132;Parent=Msa0110400-mRNA-1
chr1_3 exon 23239318 23239404 23239318 ID=Msa0110400-mRNA-1:exon:8133;Parent=Msa0110400-mRNA-1
chr1_3 exon 23241635 23241782 23241635 ID=Msa0110400-mRNA-1:exon:8134;Parent=Msa0110400-mRNA-1
chr1_3 exon 23241957 23242078 23241957 ID=Msa0110400-mRNA-1:exon:8135;Parent=Msa0110400-mRNA-1
chr1_3 exon 23242255 23242371 23242255 ID=Msa0110400-mRNA-1:exon:8136;Parent=Msa0110400-mRNA-1
chr1_3 exon 23242549 23242644 23242549 ID=Msa0110400-mRNA-1:exon:8137;Parent=Msa0110400-mRNA-1
chr1_3 exon 23242724 23242783 23242724 ID=Msa0110400-mRNA-1:exon:8138;Parent=Msa0110400-mRNA-1
chr1_3 exon 23243203 23243352 23243203 ID=Msa0110400-mRNA-1:exon:8139;Parent=Msa0110400-mRNA-1
chr1_3 exon 23244905 23245009 23244905 ID=Msa0110400-mRNA-1:exon:8140;Parent=Msa0110400-mRNA-1
chr1_3 exon 23245240 23245350 23245240 ID=Msa0110400-mRNA-1:exon:8141;Parent=Msa0110400-mRNA-1
chr1_3 exon 23245451 23245528 23245451 ID=Msa0110400-mRNA-1:exon:8142;Parent=Msa0110400-mRNA-1
chr1_3 exon 23245646 23245742 23245646 ID=Msa0110400-mRNA-1:exon:8143;Parent=Msa0110400-mRNA-1
chr1_3 exon 23245841 23245892 23245841 ID=Msa0110400-mRNA-1:exon:8144;Parent=Msa0110400-mRNA-1
chr1_3 exon 23246306 23246376 23246306 ID=Msa0110400-mRNA-1:exon:8145;Parent=Msa0110400-mRNA-1
chr1_3 exon 23246491 23246991 23246491 ID=Msa0110400-mRNA-1:exon:8146;Parent=Msa0110400-mRNA-1
chr1_3 five_prime_UTR 23236325 23236430 23236325 ID=Msa0110400-mRNA-1:five_prime_utr;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23236431 23236443 23236431 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23236552 23236637 23236552 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23238817 23238888 23238817 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23239035 23239097 23239035 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23239318 23239404 23239318 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23241635 23241782 23241635 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23241957 23242078 23241957 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23242255 23242371 23242255 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23242549 23242644 23242549 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23242724 23242783 23242724 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23243203 23243352 23243203 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23244905 23245009 23244905 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23245240 23245350 23245240 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23245451 23245528 23245451 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23245646 23245742 23245646 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23245841 23245892 23245841 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23246306 23246376 23246306 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 CDS 23246491 23246606 23246491 ID=Msa0110400-mRNA-1:cds;Parent=Msa0110400-mRNA-1
chr1_3 three_prime_UTR 23246607 23246991 23246607 ID=Msa0110400-mRNA-1:three_prime_utr;Parent=Msa0110400-mRNA-1
Gene Sequence

>Msa0110400

ATGAACTGCTCCATTTCCGGTGAGGTTCCAGATGAGCCTGTGGTGTCAAAAAGCTCTGGGCTTTTGTTCGAGAAGAGATTAATCGAGAGGCATATAATGGATTTTGGGAAGTGTCCAGTTACAGGAGAGCCGCTTACTCTGGATGATATTGTGCCGATCAAAACAGGCAAGATAGTGAAGCCTAGACCAGTGCAGGCAGCAAGCATTCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAATTTTGCATTGGAGCAGCAGTTGCATACAGCAAGGCAAGAGTTAAGTCATGCTCTATACCAGCATGATGCTGCTTGCCGCGTGATTGCAAGGCTTAAAAAGGAACGAGACGAAGCTAGGTCTATACTTGCACAGGCAGAAAGGCAGTTCCCTATTTCTACTCCAAATTCTGTGACAGCTAATGCTCCTGTTCATAGCAATGGGAAAAGAGCTGCTGATGACGAGGAGTTGGCACCTAATGCGAAGAAATTACATCCTGGAATATCTTCCAGTATAATTTCTGAGCTAACAGACTGCAATGCTGCTCTTTCCGGGAAGAGGAAAAAGCGAGAGATTCCTGCGACTTTGGCTTCTGTTGATGCTCTAGAAACATATACGCAGATATCTAGCCATCCCTTAAACAAAACTAGCAAACAGGGCATTATAGCTCTTGATATCCTTCATTCTAAGGACATAATCGCAACTGGAAATATTGATACAAATGCTGTTATTTTTGACCGTCCATCAGGACAAGTATTAGCTACACTCAGCGGTCACTCTAAAAAGGTAACAAGCGTGAAGTTTGTAGGTCAGGGTGAATCTATCATAACTGGTTCAGCAGATAAGACAGTTCGTTTGTGGCAAGGGTCAGATGATGGTCACTATAACTGCAAACAGATCTTGAAGGATCATTCTGCTGAAGTAAGTGAATCTAACCACATTGCTGTTCCTAATTTTTCATTGTTTCTTGTTTGTGTTTATCCTACTTGTAATTCGGTGGAAGCTGTCACTGTCCATGCCACCAATAATTACTTTGTGACTGCATCACTTGATGGCAGCTGGTGCTTTTATGAACTATCTTCAGGAACTTGTCTGACTCAGGTTTCTGACTCTTCCGAAGGCTATACATCTGCAGCTTTTCATCCCGATGGTCTTATTCTTGGAACTGGCACTACAGATTCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGCAAATGTTGCTAAGTTTGATGGACATGTTGGGCATGTAACTGCAATATCCTTTTCTGAGAATGGATATTACCTTGCGACCGCAGCTCATGATGGTGTAAAGCTTTGGGATCTACGCAAGTTGAAAAACTTCCGGGACTATGGCCCATATGACTCAGCAACTCCAACAAACTCTGTGGAGTTTGACCACAGTGGATCCTACCTTGCAGTTGCAGGCTCTGATGTTAGGATATTACAAGTTGCAAATGTGAAATCTGAATGGAACTTGATCAAAACTCTTCCTGATTTATCTGGAACAGGTAAATCCACATGTGTAAAATTCGGCCCAGATTCAAAATACTTAGCAGTTGCATCAATGGACCGGAATCTTCGAATATTTGGCCAACCTGGCGAAGATATTTCTGACAAATCATGA
Protein sequence

>Msa0110400

MNCSISGEVPDEPVVSKSSGLLFEKRLIERHIMDFGKCPVTGEPLTLDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSILAQAERQFPISTPNSVTANAPVHSNGKRAADDEELAPNAKKLHPGISSSIISELTDCNAALSGKRKKREIPATLASVDALETYTQISSHPLNKTSKQGIIALDILHSKDIIATGNIDTNAVIFDRPSGQVLATLSGHSKKVTSVKFVGQGESIITGSADKTVRLWQGSDDGHYNCKQILKDHSAEVSESNHIAVPNFSLFLVCVYPTCNSVEAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVSDSSEGYTSAAFHPDGLILGTGTTDSLVKIWDVKSQANVAKFDGHVGHVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRDYGPYDSATPTNSVEFDHSGSYLAVAGSDVRILQVANVKSEWNLIKTLPDLSGTGKSTCVKFGPDSKYLAVASMDRNLRIFGQPGEDISDKS*