AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1089220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089220 MtrunA17_Chr2g0329931 99.758 413 1 0 1 413 1 413 0.0 850
Msa1089220 MtrunA17_Chr8g0342861 94.189 413 24 0 1 413 1 413 0.0 808
Msa1089220 MtrunA17_Chr2g0299681 92.978 413 29 0 1 413 1 413 0.0 800
Msa1089220 MtrunA17_Chr4g0070981 91.525 413 35 0 1 413 1 413 0.0 781
Msa1089220 MtrunA17_Chr2g0297261 64.611 373 132 0 41 413 34 406 0.0 517
Msa1089220 MtrunA17_Chr1g0169331 61.168 394 116 5 56 413 6 398 3.37e-164 467
Msa1089220 MtrunA17_Chr8g0342851 63.584 346 94 4 71 413 3 319 8.18e-145 414
Msa1089220 MtrunA17_Chr7g0247181 40.984 366 212 4 42 406 141 503 7.04e-89 278
Msa1089220 MtrunA17_Chr7g0247191 41.257 366 211 4 42 406 151 513 8.71e-89 278
Msa1089220 MtrunA17_Chr7g0247221 40.984 366 212 4 42 406 144 506 1.05e-88 278
Msa1089220 MtrunA17_Chr4g0003441 39.370 381 224 7 35 409 101 480 2.20e-76 245
Msa1089220 MtrunA17_Chr1g0149251 39.169 337 199 6 78 409 1 336 4.83e-71 227
Msa1089220 MtrunA17_Chr3g0107851 35.467 375 220 5 40 396 116 486 1.53e-67 224
Msa1089220 MtrunA17_Chr1g0179761 36.341 399 214 13 41 405 80 472 1.33e-65 217
Msa1089220 MtrunA17_Chr2g0330401 35.068 365 223 3 40 394 95 455 4.76e-65 216
Msa1089220 MtrunA17_Chr7g0271121 38.596 342 195 7 66 396 131 468 1.59e-62 214
Msa1089220 MtrunA17_Chr4g0076491 34.301 379 217 7 47 397 293 667 3.54e-62 213
Msa1089220 MtrunA17_Chr7g0270131 34.530 362 230 4 40 394 231 592 5.24e-62 213
Msa1089220 MtrunA17_Chr6g0449741 34.748 377 216 7 47 397 255 627 1.35e-61 210
Msa1089220 MtrunA17_Chr3g0095031 34.865 370 230 5 45 406 94 460 4.57e-61 207
Msa1089220 MtrunA17_Chr6g0483491 33.065 372 245 3 40 408 9 379 6.54e-60 201
Msa1089220 MtrunA17_Chr3g0121351 34.190 389 233 7 41 407 145 532 9.96e-60 204
Msa1089220 MtrunA17_Chr7g0236841 33.065 372 245 3 40 408 9 379 1.47e-59 200
Msa1089220 MtrunA17_Chr5g0442191 34.043 376 235 6 45 411 85 456 3.61e-59 202
Msa1089220 MtrunA17_Chr1g0193491 33.508 382 235 9 45 412 118 494 3.56e-58 201
Msa1089220 MtrunA17_Chr2g0277821 34.286 385 237 6 40 412 503 883 9.27e-57 201
Msa1089220 MtrunA17_Chr4g0040761 32.976 373 240 5 42 407 20 389 1.73e-56 198
Msa1089220 MtrunA17_Chr2g0293631 33.978 362 232 4 41 396 496 856 5.73e-56 199
Msa1089220 MtrunA17_Chr2g0310581 34.167 360 232 2 41 395 53 412 1.01e-55 191
Msa1089220 MtrunA17_Chr4g0063551 33.418 392 232 7 42 407 141 529 3.24e-55 193
Msa1089220 MtrunA17_Chr1g0176041 33.165 395 230 9 40 407 153 540 6.45e-55 191
Msa1089220 MtrunA17_Chr1g0157691 30.513 390 252 8 40 413 146 532 6.99e-54 188
Msa1089220 MtrunA17_Chr1g0200181 30.513 390 252 8 40 413 144 530 3.72e-53 186
Msa1089220 MtrunA17_Chr6g0449911 31.316 380 250 5 41 412 165 541 6.06e-52 185
Msa1089220 MtrunA17_Chr3g0098121 32.812 384 239 7 27 396 135 513 4.71e-51 183
Msa1089220 MtrunA17_Chr5g0409981 33.803 355 221 5 42 384 105 457 1.46e-50 178
Msa1089220 MtrunA17_Chr6g0461751 31.978 369 229 7 41 394 140 501 5.07e-48 171
Msa1089220 MtrunA17_Chr2g0300291 31.593 383 246 7 27 396 124 503 2.04e-46 170
Msa1089220 MtrunA17_Chr2g0307471 31.522 368 229 12 40 391 90 450 3.79e-43 158
Msa1089220 MtrunA17_Chr7g0263771 28.084 381 267 4 34 412 129 504 1.39e-42 158
Msa1089220 MtrunA17_Chr4g0062301 30.726 358 226 10 50 391 106 457 1.83e-42 157
Msa1089220 MtrunA17_Chr6g0475251 31.054 351 215 6 45 380 115 453 2.19e-42 158
Msa1089220 MtrunA17_Chr4g0058591 31.595 326 213 4 24 343 189 510 1.90e-40 150
Msa1089220 MtrunA17_Chr2g0309551 26.173 405 234 7 40 382 108 509 1.04e-39 149
Msa1089220 MtrunA17_Chr8g0347171 29.427 384 244 10 42 406 161 536 1.39e-38 147
Msa1089220 MtrunA17_Chr3g0114081 29.396 364 229 7 47 383 22 384 1.42e-38 146
Msa1089220 MtrunA17_Chr1g0204391 28.926 363 223 5 49 380 52 410 3.97e-38 145
Msa1089220 MtrunA17_Chr8g0347161 28.646 384 247 9 42 406 103 478 1.62e-37 143
Msa1089220 MtrunA17_Chr7g0236831 26.077 441 236 10 41 399 163 595 4.00e-37 143
Msa1089220 MtrunA17_Chr8g0347151 28.385 384 248 8 42 406 202 577 2.13e-36 140
Msa1089220 MtrunA17_Chr8g0386451 27.344 384 257 7 42 406 289 669 7.67e-35 137
Msa1089220 MtrunA17_Chr4g0025141 37.198 207 115 5 214 405 14 220 9.49e-35 129
Msa1089220 MtrunA17_Chr1g0192021 26.406 409 246 8 41 397 26 431 5.47e-34 133
Msa1089220 MtrunA17_Chr6g0466611 28.312 385 238 11 41 396 142 517 2.15e-33 132
Msa1089220 MtrunA17_Chr4g0034411 28.947 342 224 10 68 395 102 438 2.63e-33 132
Msa1089220 MtrunA17_Chr3g0137901 39.634 164 97 2 247 409 10 172 1.40e-32 121
Msa1089220 MtrunA17_Chr5g0443991 27.062 388 261 9 46 413 81 466 2.09e-32 129
Msa1089220 MtrunA17_Chr5g0429221 26.494 385 263 7 40 413 2 377 4.99e-28 114
Msa1089220 MtrunA17_Chr3g0137891 42.236 161 90 3 78 235 1 161 2.91e-27 108
Msa1089220 MtrunA17_Chr3g0145781 26.933 401 239 13 24 383 120 507 1.43e-25 108
Msa1089220 MtrunA17_Chr4g0039471 36.126 191 119 1 36 223 218 408 6.08e-24 102
Msa1089220 MtrunA17_Chr4g0025131 34.270 178 111 4 24 197 40 215 2.64e-23 99.0
Msa1089220 MtrunA17_Chr4g0074521 25.445 393 237 14 49 399 90 468 2.96e-23 101
Msa1089220 MtrunA17_Chr4g0004301 23.499 383 214 6 79 389 71 446 8.28e-23 100
Msa1089220 MtrunA17_Chr4g0025101 31.034 232 94 7 198 405 7 196 1.73e-22 95.1
Msa1089220 MtrunA17_Chr4g0062321 29.237 236 157 6 117 348 4 233 3.11e-22 95.1
Msa1089220 MtrunA17_Chr5g0434301 22.872 376 225 6 79 389 71 446 4.31e-22 98.2
Msa1089220 MtrunA17_Chr8g0349951 36.429 140 82 2 40 175 9 145 4.39e-19 84.0
Msa1089220 MtrunA17_Chr4g0029191 31.285 179 114 4 41 210 44 222 9.38e-18 85.5
Msa1089220 MtrunA17_Chr4g0029191 35.106 94 61 0 310 403 392 485 8.37e-14 73.2
Msa1089220 MtrunA17_Chr1g0155201 29.249 253 147 11 152 395 6 235 2.09e-17 83.2
Msa1089220 MtrunA17_Chr2g0301281 30.726 179 115 4 41 210 41 219 2.96e-17 84.0
Msa1089220 MtrunA17_Chr2g0301281 35.052 97 62 1 310 406 389 484 2.35e-14 75.1
Msa1089220 MtrunA17_Chr8g0354761 23.889 360 244 13 64 404 31 379 6.22e-17 82.4
Msa1089220 MtrunA17_Chr4g0058601 47.170 53 28 0 344 396 9 61 8.48e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089220 AT1G54270.1 92.995 414 26 2 1 413 1 412 0.0 792
Msa1089220 AT3G13920.1 92.512 414 28 2 1 413 1 412 0.0 788
Msa1089220 AT1G54270.2 91.787 414 26 3 1 413 1 407 0.0 775
Msa1089220 AT3G13920.4 91.304 414 28 3 1 413 1 407 0.0 770
Msa1089220 AT1G72730.1 89.372 414 43 1 1 413 1 414 0.0 769
Msa1089220 AT3G13920.3 94.330 388 21 1 27 413 15 402 0.0 755
Msa1089220 AT3G13920.2 92.366 393 27 2 1 392 1 391 0.0 746
Msa1089220 AT3G13920.5 92.366 393 27 2 1 392 5 395 0.0 745
Msa1089220 AT3G19760.1 62.725 389 138 1 25 413 27 408 0.0 511
Msa1089220 AT1G51380.1 58.108 370 155 0 40 409 22 391 1.33e-162 462
Msa1089220 AT1G51380.2 58.103 253 106 0 40 292 22 274 7.77e-108 319
Msa1089220 AT3G61240.2 40.650 369 215 4 42 409 126 491 2.91e-90 281
Msa1089220 AT3G61240.1 40.650 369 215 4 42 409 126 491 2.91e-90 281
Msa1089220 AT2G45810.1 40.872 367 213 4 42 407 156 519 1.25e-88 278
Msa1089220 AT4G00660.1 39.837 369 218 4 42 409 133 498 1.34e-88 278
Msa1089220 AT4G00660.2 39.837 369 218 4 42 409 133 498 1.34e-88 278
Msa1089220 AT1G51380.4 55.660 212 94 0 40 251 22 233 2.12e-82 255
Msa1089220 AT1G51380.3 55.660 212 94 0 40 251 22 233 3.99e-82 254
Msa1089220 AT5G11170.1 38.660 388 231 7 28 409 33 419 2.21e-77 246
Msa1089220 AT5G11200.1 38.660 388 231 7 28 409 33 419 2.21e-77 246
Msa1089220 AT5G11170.2 39.169 337 199 6 78 409 1 336 1.07e-69 224
Msa1089220 AT5G11200.3 34.965 429 231 8 28 409 33 460 6.44e-69 225
Msa1089220 AT3G53110.1 34.988 403 235 10 26 407 81 477 2.12e-67 222
Msa1089220 AT1G55150.1 34.626 361 230 2 40 394 99 459 9.86e-66 218
Msa1089220 AT1G55150.2 34.626 361 230 2 40 394 124 484 1.13e-65 218
Msa1089220 AT5G26742.1 35.238 420 243 10 9 413 80 485 2.34e-64 219
Msa1089220 AT5G26742.2 35.238 420 243 10 9 413 80 485 2.37e-64 219
Msa1089220 AT5G63120.2 34.085 399 247 4 24 413 153 544 3.82e-64 216
Msa1089220 AT5G26742.3 36.458 384 212 10 45 413 26 392 1.50e-63 216
Msa1089220 AT2G33730.1 34.987 383 221 6 41 397 314 694 1.81e-63 217
Msa1089220 AT3G22310.2 35.484 372 227 6 45 407 121 488 1.59e-62 212
Msa1089220 AT3G22310.1 35.484 372 227 6 45 407 121 488 2.09e-62 212
Msa1089220 AT3G22330.1 35.215 372 228 6 45 407 109 476 3.80e-62 211
Msa1089220 AT2G47330.1 34.359 390 238 7 37 412 222 607 2.96e-60 209
Msa1089220 AT1G77030.1 32.527 372 243 4 42 407 30 399 1.68e-59 207
Msa1089220 AT3G06480.1 35.156 384 230 6 41 412 436 812 5.11e-59 208
Msa1089220 AT1G20920.2 32.850 414 263 7 9 412 163 571 1.35e-58 205
Msa1089220 AT3G58510.1 33.247 385 237 7 41 406 152 535 4.74e-58 200
Msa1089220 AT3G58510.3 33.247 385 237 7 41 406 152 535 4.74e-58 200
Msa1089220 AT3G58510.2 33.247 385 237 7 41 406 152 535 4.74e-58 200
Msa1089220 AT2G42520.2 35.000 400 230 10 33 404 149 546 6.27e-58 200
Msa1089220 AT2G42520.1 35.000 400 230 10 33 404 149 546 6.27e-58 200
Msa1089220 AT2G42520.3 35.000 400 230 10 33 404 149 546 6.27e-58 200
Msa1089220 AT3G58570.1 33.753 397 240 8 33 406 136 532 3.82e-57 198
Msa1089220 AT5G14610.2 32.808 381 243 6 41 412 162 538 5.38e-57 198
Msa1089220 AT5G14610.6 32.808 381 243 6 41 412 162 538 5.94e-57 198
Msa1089220 AT1G20920.4 34.301 379 233 6 46 412 535 909 6.65e-57 202
Msa1089220 AT1G20920.6 34.301 379 233 6 46 412 535 909 6.65e-57 202
Msa1089220 AT1G20920.3 34.301 379 233 6 46 412 535 909 6.65e-57 202
Msa1089220 AT1G20920.7 34.301 379 233 6 46 412 535 909 6.65e-57 202
Msa1089220 AT1G20920.5 34.301 379 233 6 46 412 535 909 6.65e-57 202
Msa1089220 AT1G20920.1 34.301 379 233 6 46 412 535 909 6.65e-57 202
Msa1089220 AT5G14610.5 32.808 381 243 6 41 412 170 546 6.90e-57 198
Msa1089220 AT5G60990.1 32.071 396 245 5 36 413 5 394 1.72e-56 192
Msa1089220 AT3G01540.1 34.555 382 235 10 41 412 159 535 4.26e-56 195
Msa1089220 AT3G01540.4 34.555 382 235 10 41 412 159 535 4.75e-56 195
Msa1089220 AT3G01540.2 34.555 382 235 10 41 412 159 535 4.75e-56 195
Msa1089220 AT3G01540.3 34.555 382 235 10 41 412 159 535 4.75e-56 195
Msa1089220 AT1G16280.1 33.158 380 238 5 30 396 43 419 1.50e-55 191
Msa1089220 AT4G16630.1 33.867 375 239 4 31 396 155 529 2.13e-54 193
Msa1089220 AT5G14610.7 32.153 367 236 6 55 412 45 407 2.00e-53 186
Msa1089220 AT5G14610.3 32.153 367 236 6 55 412 45 407 2.00e-53 186
Msa1089220 AT5G11200.2 31.991 447 238 11 28 409 33 478 8.62e-53 183
Msa1089220 AT3G02065.3 32.603 365 233 5 41 394 111 473 2.96e-52 182
Msa1089220 AT3G02065.2 32.603 365 233 5 41 394 111 473 2.96e-52 182
Msa1089220 AT5G14610.1 32.249 369 237 6 53 412 242 606 3.55e-52 186
Msa1089220 AT4G33370.1 30.848 389 250 8 40 412 97 482 6.76e-52 182
Msa1089220 AT1G28180.1 34.694 343 208 6 79 410 12 349 1.49e-51 177
Msa1089220 AT5G51280.1 30.591 389 251 7 40 412 146 531 1.66e-51 182
Msa1089220 AT1G31970.1 33.075 387 241 6 40 413 116 497 2.44e-51 181
Msa1089220 AT3G18600.1 31.649 376 247 6 41 408 90 463 3.15e-49 176
Msa1089220 AT3G09620.1 32.447 376 209 7 46 409 402 744 4.93e-49 179
Msa1089220 AT3G09620.2 32.447 376 209 7 46 409 403 745 5.33e-49 179
Msa1089220 AT3G09720.2 29.921 381 260 4 34 412 138 513 1.60e-48 173
Msa1089220 AT3G09720.1 29.921 381 260 4 34 412 138 513 1.60e-48 173
Msa1089220 AT3G02065.1 32.628 331 210 5 75 394 8 336 7.75e-47 165
Msa1089220 AT1G12770.2 27.363 402 230 6 40 381 110 509 9.16e-47 169
Msa1089220 AT1G12770.1 27.363 402 230 6 40 381 110 509 9.16e-47 169
Msa1089220 AT5G65900.1 30.667 375 251 6 38 404 152 525 1.45e-45 167
Msa1089220 AT5G62190.1 32.181 376 227 9 55 411 111 477 2.55e-45 166
Msa1089220 AT5G63120.3 33.435 329 203 4 24 343 153 474 1.48e-44 161
Msa1089220 AT5G63120.4 33.435 329 203 4 24 343 153 474 1.48e-44 161
Msa1089220 AT5G63120.5 33.435 329 203 4 24 343 153 474 1.48e-44 161
Msa1089220 AT5G63120.1 33.435 329 203 4 24 343 153 474 1.92e-44 161
Msa1089220 AT3G06480.2 33.333 324 197 6 41 352 436 752 1.75e-41 156
Msa1089220 AT5G05450.1 30.168 358 225 7 50 383 26 382 6.00e-41 153
Msa1089220 AT1G71370.1 30.114 352 230 7 47 383 23 373 3.08e-40 151
Msa1089220 AT5G14610.4 31.024 332 216 6 41 363 170 497 4.02e-40 149
Msa1089220 AT5G63630.1 29.948 384 242 8 42 406 56 431 1.02e-38 146
Msa1089220 AT5G08620.1 30.151 398 235 9 42 412 82 463 1.77e-38 146
Msa1089220 AT5G08610.1 30.318 409 237 11 28 406 369 759 1.88e-38 148
Msa1089220 AT5G63630.2 29.948 384 242 8 42 406 250 625 1.48e-37 145
Msa1089220 AT2G07750.1 27.157 394 248 10 42 407 377 759 3.87e-35 138
Msa1089220 AT1G63250.1 26.866 402 248 10 35 406 321 706 1.19e-33 134
Msa1089220 AT4G34910.1 26.098 387 229 8 40 372 46 429 3.62e-32 129
Msa1089220 AT5G54910.1 27.273 396 263 12 17 396 49 435 1.25e-31 127
Msa1089220 AT5G19210.2 27.763 389 231 12 49 399 85 461 1.60e-31 125
Msa1089220 AT2G40700.1 25.225 444 251 12 41 403 31 474 3.67e-31 125
Msa1089220 AT4G09730.1 26.753 385 246 9 40 396 112 488 4.10e-31 125
Msa1089220 AT3G06980.1 28.500 400 239 14 21 383 360 749 5.58e-28 117
Msa1089220 AT1G71280.2 27.419 310 189 9 47 345 24 308 2.43e-26 108
Msa1089220 AT4G15850.1 25.648 386 211 13 79 394 74 453 4.85e-26 110
Msa1089220 AT1G71280.1 27.419 310 189 9 47 345 24 308 1.65e-25 108
Msa1089220 AT3G16840.1 32.821 195 107 4 41 211 191 385 1.92e-19 91.3
Msa1089220 AT3G16840.2 32.821 195 107 4 41 211 192 386 2.01e-19 91.3
Msa1089220 AT5G19210.1 26.032 315 183 11 123 399 2 304 2.00e-17 83.2
Msa1089220 AT5G19210.3 26.032 315 183 11 123 399 2 304 2.00e-17 83.2
Msa1089220 AT1G28180.2 37.273 110 55 2 79 177 12 118 1.02e-11 62.4

Find 118 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCATAAGGTTTAAATTTA+AGG 0.096044 7_3:+2557090 None:intergenic
TGTTTAATCACTTAATTATT+AGG 0.102047 7_3:-2557156 Msa1089220:three_prime_UTR
GAACACTCCAACCTGAATTT+TGG 0.146444 7_3:+2557908 None:intergenic
TCGAAGAAAGATTGAAAATT+AGG 0.147639 7_3:+2560170 None:intergenic
GAAGAGTGAGAGAGAGATTT+AGG 0.185365 7_3:+2560233 None:intergenic
TGACATGTATGATATAAATA+AGG 0.246109 7_3:+2557062 None:intergenic
TCTCATTACCACTGACCTTT+TGG 0.272997 7_3:-2557547 Msa1089220:CDS
GTTTAATCACTTAATTATTA+GGG 0.282354 7_3:-2557155 Msa1089220:three_prime_UTR
CGGCGCAGATCCGAGGAGTT+TGG 0.291726 7_3:-2560198 Msa1089220:five_prime_UTR
ACATCTGACTCTATTTATAA+TGG 0.292865 7_3:-2557192 Msa1089220:three_prime_UTR
ACATCGAGACCCTTGATAAA+AGG 0.302219 7_3:+2558579 None:intergenic
TGCTGTGCCAGCTCCCTTGT+TGG 0.308505 7_3:+2558450 None:intergenic
TCAGTGCCAGGCTTTGGTTT+TGG 0.312026 7_3:-2558475 Msa1089220:CDS
GTTGCTGCCACCCAAAATTC+AGG 0.315611 7_3:-2557919 Msa1089220:CDS
CGAAGAAAGATTGAAAATTA+GGG 0.317411 7_3:+2560171 None:intergenic
GCTGTGCCAGCTCCCTTGTT+GGG 0.317476 7_3:+2558451 None:intergenic
TTGCATTAAAATGTTTGTTT+TGG 0.318028 7_3:-2558253 Msa1089220:CDS
CGCTTTACCAGAATTCTAAC+TGG 0.324777 7_3:+2557831 None:intergenic
CAGATGTCTTTGAACTCTAA+TGG 0.325903 7_3:+2557208 None:intergenic
AAGACAGCGACGTTCTGTTC+TGG 0.339543 7_3:-2558528 Msa1089220:CDS
TTGTTCTTTGTTAAGTCATC+GGG 0.340229 7_3:-2557289 Msa1089220:three_prime_UTR
TGGTGATTACCTTGGTGTTA+AGG 0.345997 7_3:-2558403 Msa1089220:CDS
TGATGATATCACGAGTGTTT+TGG 0.362515 7_3:+2557601 None:intergenic
GAATAAGCCAGTTAGAATTC+TGG 0.365648 7_3:-2557838 Msa1089220:CDS
GGCGCAGATCCGAGGAGTTT+GGG 0.371205 7_3:-2560197 Msa1089220:five_prime_UTR
CTGAGAGGCATATATGCTTA+TGG 0.371983 7_3:-2559202 Msa1089220:intron
GTATCAAATTGTGAACCTTC+CGG 0.388344 7_3:+2559419 None:intergenic
TTATGGTTTGGTTCAGTGCC+AGG 0.388767 7_3:-2558487 Msa1089220:CDS
AAAACTATCTCCATCGTATT+GGG 0.393330 7_3:-2557461 Msa1089220:CDS
CAACAACATGGACACCAGTT+TGG 0.395614 7_3:+2558331 None:intergenic
CTTGTGATCTCCAGAGCCTC+TGG 0.397309 7_3:+2557870 None:intergenic
GCAGCAGCTTGATTATGGTT+TGG 0.397488 7_3:-2558499 Msa1089220:CDS
TTTGGTTCAGTGCCAGGCTT+TGG 0.398715 7_3:-2558481 Msa1089220:CDS
GAAAACTATCTCCATCGTAT+TGG 0.406801 7_3:-2557462 Msa1089220:CDS
ATTGGGCGAAGTGGGCGTTT+TGG 0.409374 7_3:-2557444 Msa1089220:CDS
AAATAAGGGTTGCTAGCATA+AGG 0.415054 7_3:+2557077 None:intergenic
AGATGTCTTTGAACTCTAAT+GGG 0.418418 7_3:+2557209 None:intergenic
CATGTTGTTGTTGGTACTCC+TGG 0.424537 7_3:-2558318 Msa1089220:CDS
AATGCTTTCACGTGGTTTCA+AGG 0.432515 7_3:-2558217 Msa1089220:CDS
CCCCTTTGCTGTATTGCAGA+TGG 0.433851 7_3:+2558609 None:intergenic
TTTGTTCTTTGTTAAGTCAT+CGG 0.435160 7_3:-2557290 Msa1089220:three_prime_UTR
GCCATCTGCAATACAGCAAA+GGG 0.435434 7_3:-2558610 Msa1089220:CDS
TTCATGAACTTCATCGTATG+AGG 0.438056 7_3:+2559258 None:intergenic
CGTGATGAATTGACCCTTGA+GGG 0.439342 7_3:-2557810 Msa1089220:CDS
GAGAGAATTGAAGAGAGAAT+AGG 0.441445 7_3:+2560146 None:intergenic
CATGGGTGGCTGAGACAGTA+TGG 0.446776 7_3:+2557634 None:intergenic
TGATGTTCAGCAAGTGTCTC+TGG 0.448249 7_3:-2557514 Msa1089220:CDS
CAGCAGGCTCAGTCAGGAAC+TGG 0.451120 7_3:-2558552 Msa1089220:CDS
GATCTGCGCCGTGGAGTTGA+AGG 0.453865 7_3:+2560210 None:intergenic
TACAATGCCTCCAGAGGCTC+TGG 0.459621 7_3:-2557880 Msa1089220:CDS
CATCAATACCACGGGCCAAA+AGG 0.460041 7_3:+2557532 None:intergenic
TTTGGCCCCAACAAGGGAGC+TGG 0.463851 7_3:-2558457 Msa1089220:CDS
AGTAGATCAGCAACATTTGA+AGG 0.466150 7_3:+2557327 None:intergenic
AAGGTTCATGCTTGTGTTGG+TGG 0.466235 7_3:-2558384 Msa1089220:CDS
TGCTGCGAAGACAGTCTCTT+CGG 0.488354 7_3:-2558281 Msa1089220:CDS
GTGATTCAGCAGGCTCAGTC+AGG 0.498167 7_3:-2558558 Msa1089220:CDS
CATCTTAGTGTCAAACTGCT+TGG 0.499196 7_3:+2559397 None:intergenic
CTCCATCGTATTGGGCGAAG+TGG 0.499221 7_3:-2557453 Msa1089220:CDS
ACTGGTGTCCATGTTGTTGT+TGG 0.499852 7_3:-2558327 Msa1089220:CDS
GATCAGCGTATTCTCCAAAC+TGG 0.501639 7_3:-2558345 Msa1089220:CDS
TTCACGTGGTTTCAAGGACC+AGG 0.504125 7_3:-2558211 Msa1089220:intron
ACACAAGGCGCAAGGTGGAC+TGG 0.505122 7_3:-2557683 Msa1089220:CDS
GTTAAGGTTCATGCTTGTGT+TGG 0.507288 7_3:-2558387 Msa1089220:CDS
GTGTGATCTTTATGAGACTC+TGG 0.521304 7_3:-2557733 Msa1089220:CDS
ATCATGCGTGAATTCCGCTC+TGG 0.527239 7_3:-2557582 Msa1089220:CDS
GAAGAATTCTTGTCCTTCAG+TGG 0.531706 7_3:+2559282 None:intergenic
GAGAAGGTTATGAGAGCACT+TGG 0.533228 7_3:-2558423 Msa1089220:CDS
GTATGTATTCTACTACTACT+AGG 0.534607 7_3:+2560288 None:intergenic
AATTACAGGCTTTCCACTGA+AGG 0.540134 7_3:-2559295 Msa1089220:intron
CTGTGCCAGCTCCCTTGTTG+GGG 0.543113 7_3:+2558452 None:intergenic
TGCTATCAACTTCGTCACAT+TGG 0.543489 7_3:-2557409 Msa1089220:CDS
AGCATGTCAAACACACGTCC+AGG 0.544974 7_3:+2558300 None:intergenic
GGGTCTCGATGTGATTCAGC+AGG 0.549184 7_3:-2558568 Msa1089220:CDS
CTCTGCTACAATGCCTCCAG+AGG 0.551425 7_3:-2557886 Msa1089220:CDS
TTAGGGTTTCCCAAACTCCT+CGG 0.552128 7_3:+2560188 None:intergenic
GACATGTATGATATAAATAA+GGG 0.554033 7_3:+2557063 None:intergenic
TTGGGGCCAAAACCAAAGCC+TGG 0.554251 7_3:+2558469 None:intergenic
TCTTCGCTCACTCCACAAGC+AGG 0.561786 7_3:-2560122 Msa1089220:intron
CAGAGGCTCTGGAGATCACA+AGG 0.564855 7_3:-2557869 Msa1089220:CDS
CTCAGCCACCCATGGAGACA+TGG 0.565513 7_3:-2557625 Msa1089220:CDS
AACTCCACGGCGCAGATCCG+AGG 0.568103 7_3:-2560205 Msa1089220:five_prime_UTR
TCCATCGTATTGGGCGAAGT+GGG 0.570459 7_3:-2557452 Msa1089220:CDS
CTGCCACCCAAAATTCAGGT+TGG 0.574116 7_3:-2557915 Msa1089220:CDS
TTGGTCCATGTCTCCATGGG+TGG 0.574389 7_3:+2557620 None:intergenic
AGTCATGGCAGGTTTAGCTC+CGG 0.585504 7_3:-2559438 Msa1089220:exon
AGCCATCTGCAATACAGCAA+AGG 0.592072 7_3:-2558611 Msa1089220:CDS
CACTCTTCCCTTCAACTCCA+CGG 0.594775 7_3:-2560218 Msa1089220:five_prime_UTR
AACTCCTCGGATCTGCGCCG+TGG 0.597296 7_3:+2560201 None:intergenic
TTCTTTGTTAAGTCATCGGG+GGG 0.598798 7_3:-2557286 Msa1089220:three_prime_UTR
ATTGGAAGATGCAAGAATGC+TGG 0.599752 7_3:-2557391 Msa1089220:CDS
GCCCACTTCGCCCAATACGA+TGG 0.601432 7_3:+2557451 None:intergenic
AGAACTGCTTGATACCCTCA+AGG 0.605423 7_3:+2557796 None:intergenic
CAGGAGTACCAACAACAACA+TGG 0.608453 7_3:+2558319 None:intergenic
GTGATCTCCAGAGCCTCTGG+AGG 0.613832 7_3:+2557873 None:intergenic
ATCTGCGCCGTGGAGTTGAA+GGG 0.615084 7_3:+2560211 None:intergenic
TGAATGTTGACAAGGAAGAG+TGG 0.615932 7_3:-2557770 Msa1089220:CDS
GTTCTTTGTTAAGTCATCGG+GGG 0.616041 7_3:-2557287 Msa1089220:three_prime_UTR
TTGCTGAACATCAATACCAC+GGG 0.620577 7_3:+2557524 None:intergenic
GAGATACGTATACCTGCTTG+TGG 0.623092 7_3:+2560110 None:intergenic
GCTGGCACAGCAGATTGAGA+AGG 0.628451 7_3:-2558439 Msa1089220:CDS
CATACTGTCTCAGCCACCCA+TGG 0.631002 7_3:-2557633 Msa1089220:CDS
ATGGCAGGTTTAGCTCCGGA+AGG 0.641220 7_3:-2559434 Msa1089220:CDS
AGAGCACTTGGTGATTACCT+TGG 0.644049 7_3:-2558411 Msa1089220:CDS
TGTTCTTTGTTAAGTCATCG+GGG 0.645741 7_3:-2557288 Msa1089220:three_prime_UTR
GTTCTATAATGTGATCGTAG+AGG 0.657829 7_3:-2557355 Msa1089220:CDS
CTTGCTGAACATCAATACCA+CGG 0.663030 7_3:+2557523 None:intergenic
GCGTGATGAATTGACCCTTG+AGG 0.663843 7_3:-2557811 Msa1089220:CDS
ACCACGGGCCAAAAGGTCAG+TGG 0.665992 7_3:+2557539 None:intergenic
TTGATAGAAAATCTTCTGAG+AGG 0.671045 7_3:-2559217 Msa1089220:CDS
GAACTGCTTGATACCCTCAA+GGG 0.677590 7_3:+2557797 None:intergenic
TGGCTCACTGACAAGATGCG+AGG 0.683723 7_3:-2557663 Msa1089220:CDS
TGGTGGCACTAGTGTTCGTG+AGG 0.685653 7_3:-2558367 Msa1089220:CDS
GTTCTACGTGAATGTTGACA+AGG 0.687466 7_3:-2557778 Msa1089220:CDS
GAACTCGAGAAGAGCCAGAG+CGG 0.689835 7_3:+2557568 None:intergenic
TGTGAACACAAGGCGCAAGG+TGG 0.709342 7_3:-2557688 Msa1089220:CDS
AAGCATGAACCTTAACACCA+AGG 0.715621 7_3:+2558394 None:intergenic
GCTGATGAAATGCTTTCACG+TGG 0.720414 7_3:-2558225 Msa1089220:CDS
CCATCTGCAATACAGCAAAG+GGG 0.725959 7_3:-2558609 Msa1089220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTTTTTTTTAAATCA+TGG - chr7_3:2557696-2557715 Msa1089220:CDS 10.0%
!! CAAAAGTTTAAAAATTAATT+GGG - chr7_3:2558254-2558273 Msa1089220:CDS 10.0%
!! AATCTAAAAGAATGAAAATT+GGG + chr7_3:2557246-2557265 None:intergenic 15.0%
!! AAATCTAAAAGAATGAAAAT+TGG + chr7_3:2557247-2557266 None:intergenic 15.0%
!!! TTTTTTTTTTGTAAATTTGG+AGG - chr7_3:2557654-2557673 Msa1089220:CDS 15.0%
!!! TAATGCATAATTTTAATTAC+AGG - chr7_3:2558006-2558025 Msa1089220:intron 15.0%
!! GCAAAAGTTTAAAAATTAAT+TGG - chr7_3:2558253-2558272 Msa1089220:CDS 15.0%
!! TGTTTAATCACTTAATTATT+AGG - chr7_3:2560159-2560178 Msa1089220:five_prime_UTR 15.0%
!! GTTTAATCACTTAATTATTA+GGG - chr7_3:2560160-2560179 Msa1089220:five_prime_UTR 15.0%
!! ATCTAAAAGAATGAAAATTG+GGG + chr7_3:2557245-2557264 None:intergenic 20.0%
!!! TATTAGTTTGTTTTGATTTG+TGG - chr7_3:2557400-2557419 Msa1089220:CDS 20.0%
!! TTATCATACATGCTTAATAA+GGG + chr7_3:2558170-2558189 None:intergenic 20.0%
!! AAGGATTAAAAAATTGTGAT+AGG + chr7_3:2558230-2558249 None:intergenic 20.0%
!!! TCACAATTTTTTAATCCTTT+TGG - chr7_3:2558231-2558250 Msa1089220:CDS 20.0%
!!! ATTTTTAAACTTTTGCCAAA+AGG + chr7_3:2558249-2558268 None:intergenic 20.0%
!!! TGAAAACTCTTTAAAAATCA+TGG - chr7_3:2558296-2558315 Msa1089220:CDS 20.0%
!! GCAATTAATTAATTAACTCA+AGG - chr7_3:2558345-2558364 Msa1089220:CDS 20.0%
!! ATTAACTCAAGGTTATATAA+TGG - chr7_3:2558356-2558375 Msa1089220:CDS 20.0%
!! TTAACTCAAGGTTATATAAT+GGG - chr7_3:2558357-2558376 Msa1089220:CDS 20.0%
!! GTATATATAAACAATTTCGA+GGG - chr7_3:2558432-2558451 Msa1089220:CDS 20.0%
!!! TTGCATTAAAATGTTTGTTT+TGG - chr7_3:2559062-2559081 Msa1089220:intron 20.0%
!! TAGCATAAGGTTTAAATTTA+AGG + chr7_3:2560228-2560247 None:intergenic 20.0%
!! GACATGTATGATATAAATAA+GGG + chr7_3:2560255-2560274 None:intergenic 20.0%
!! TGACATGTATGATATAAATA+AGG + chr7_3:2560256-2560275 None:intergenic 20.0%
! CGAAGAAAGATTGAAAATTA+GGG + chr7_3:2557147-2557166 None:intergenic 25.0%
! TCGAAGAAAGATTGAAAATT+AGG + chr7_3:2557148-2557167 None:intergenic 25.0%
! TGATTTCAAAAATCAGAACT+TGG + chr7_3:2557349-2557368 None:intergenic 25.0%
! ATGAGATGATTCAAATCTTA+AGG + chr7_3:2557555-2557574 None:intergenic 25.0%
! TTAAGATTTGAATCATCTCA+TGG - chr7_3:2557554-2557573 Msa1089220:CDS 25.0%
! CAAAAATAAACCAACAACAA+AGG + chr7_3:2557792-2557811 None:intergenic 25.0%
! AGATGAATGAATTGTAAGTA+AGG - chr7_3:2557936-2557955 Msa1089220:CDS 25.0%
! AATAAGGGCTTAAAGAAAAA+AGG + chr7_3:2558155-2558174 None:intergenic 25.0%
! GTTATCATACATGCTTAATA+AGG + chr7_3:2558171-2558190 None:intergenic 25.0%
! TTTAAAAATTAATTGGGTGC+TGG - chr7_3:2558260-2558279 Msa1089220:CDS 25.0%
!!! ATGGACATTTATTTTTAGAC+AGG - chr7_3:2558315-2558334 Msa1089220:CDS 25.0%
!!! TGGACATTTATTTTTAGACA+GGG - chr7_3:2558316-2558335 Msa1089220:CDS 25.0%
! TATATAGTGACAACTATCAA+GGG + chr7_3:2558394-2558413 None:intergenic 25.0%
! GGTATATATAAACAATTTCG+AGG - chr7_3:2558431-2558450 Msa1089220:CDS 25.0%
! AGGTTAAAACGTAATAAGAA+CGG + chr7_3:2558560-2558579 None:intergenic 25.0%
! TACAGTGTATAGATGTATTT+AGG + chr7_3:2558580-2558599 None:intergenic 25.0%
!! TTGTTTGTTAGAACTGAATT+TGG - chr7_3:2559180-2559199 Msa1089220:intron 25.0%
! TAAAACAAGATCAATTCATC+TGG + chr7_3:2559317-2559336 None:intergenic 25.0%
! TTTGTTCTTTGTTAAGTCAT+CGG - chr7_3:2560025-2560044 Msa1089220:intron 25.0%
! ACATCTGACTCTATTTATAA+TGG - chr7_3:2560123-2560142 Msa1089220:five_prime_UTR 25.0%
! CACAAGACAGAAATAAAAAA+AGG + chr7_3:2560195-2560214 None:intergenic 25.0%
GTATGTATTCTACTACTACT+AGG + chr7_3:2557030-2557049 None:intergenic 30.0%
!!! GTTTGTTTTGATTTGTGGTA+AGG - chr7_3:2557405-2557424 Msa1089220:CDS 30.0%
!!! AGGATTTGTTGTTTTCTGAT+TGG - chr7_3:2557577-2557596 Msa1089220:CDS 30.0%
CAAGAAAACACATAACACAA+GGG + chr7_3:2557751-2557770 None:intergenic 30.0%
AGAACAAAACAGTACACTTT+AGG + chr7_3:2557855-2557874 None:intergenic 30.0%
!! ACTGTTTTGTTCTATAGTCA+TGG - chr7_3:2557862-2557881 Msa1089220:CDS 30.0%
! TCATGAAACTTTTGATGCAA+TGG - chr7_3:2558073-2558092 Msa1089220:intron 30.0%
! CATGAAACTTTTGATGCAAT+GGG - chr7_3:2558074-2558093 Msa1089220:intron 30.0%
TTGATAGAAAATCTTCTGAG+AGG - chr7_3:2558098-2558117 Msa1089220:intron 30.0%
AATTGTGATAGGCACTAATT+GGG + chr7_3:2558219-2558238 None:intergenic 30.0%
AAATTGTGATAGGCACTAAT+TGG + chr7_3:2558220-2558239 None:intergenic 30.0%
!!! GGACATTTATTTTTAGACAG+GGG - chr7_3:2558317-2558336 Msa1089220:CDS 30.0%
!!! GACATTTATTTTTAGACAGG+GGG - chr7_3:2558318-2558337 Msa1089220:CDS 30.0%
ATATAGTGACAACTATCAAG+GGG + chr7_3:2558393-2558412 None:intergenic 30.0%
CTATATAGTGACAACTATCA+AGG + chr7_3:2558395-2558414 None:intergenic 30.0%
TATATACCAATGACAAGCAT+GGG + chr7_3:2558419-2558438 None:intergenic 30.0%
ATATATACCAATGACAAGCA+TGG + chr7_3:2558420-2558439 None:intergenic 30.0%
! CTTTTCTTTAATCGCATGTT+CGG - chr7_3:2558464-2558483 Msa1089220:CDS 30.0%
! GGAATTGTTCCTTTTATCAA+GGG - chr7_3:2558727-2558746 Msa1089220:intron 30.0%
TGTGTTAGATTTCTGATTGT+TGG - chr7_3:2559127-2559146 Msa1089220:intron 30.0%
AGGTAAAGGGTTATAGAATA+TGG + chr7_3:2559275-2559294 None:intergenic 30.0%
AAAACTATCTCCATCGTATT+GGG - chr7_3:2559854-2559873 Msa1089220:intron 30.0%
TTGTTCTTTGTTAAGTCATC+GGG - chr7_3:2560026-2560045 Msa1089220:intron 30.0%
AGATGTCTTTGAACTCTAAT+GGG + chr7_3:2560109-2560128 None:intergenic 30.0%
GAGAGAATTGAAGAGAGAAT+AGG + chr7_3:2557172-2557191 None:intergenic 35.0%
AGATTTGAATCATCTCATGG+AGG - chr7_3:2557557-2557576 Msa1089220:CDS 35.0%
GCAAGAAAACACATAACACA+AGG + chr7_3:2557752-2557771 None:intergenic 35.0%
! TGTTTTCTTGCAGTGATATC+TGG - chr7_3:2557761-2557780 Msa1089220:CDS 35.0%
! GTTTTCTTGCAGTGATATCT+GGG - chr7_3:2557762-2557781 Msa1089220:CDS 35.0%
! TTTTCTTGCAGTGATATCTG+GGG - chr7_3:2557763-2557782 Msa1089220:CDS 35.0%
! TTTTGTTCTATAGTCATGGC+AGG - chr7_3:2557866-2557885 Msa1089220:CDS 35.0%
GTATCAAATTGTGAACCTTC+CGG + chr7_3:2557899-2557918 None:intergenic 35.0%
TTCATGAACTTCATCGTATG+AGG + chr7_3:2558060-2558079 None:intergenic 35.0%
ATATACCAATGACAAGCATG+GGG + chr7_3:2558418-2558437 None:intergenic 35.0%
ATGTTCTGTTCTTGTGCTTA+AGG - chr7_3:2558673-2558692 Msa1089220:intron 35.0%
! GGGAATTGTTCCTTTTATCA+AGG - chr7_3:2558726-2558745 Msa1089220:intron 35.0%
! ATTTTGCAGCAGCTTGATTA+TGG - chr7_3:2558811-2558830 Msa1089220:intron 35.0%
AATCAGAAATCTAACACACC+TGG + chr7_3:2559125-2559144 None:intergenic 35.0%
CTGATTGTTGGAACTGAATT+TGG - chr7_3:2559139-2559158 Msa1089220:intron 35.0%
TTGTTGGAACTGAATTTGGT+TGG - chr7_3:2559143-2559162 Msa1089220:intron 35.0%
AACTGAATTTGGTTGGAGTT+GGG - chr7_3:2559150-2559169 Msa1089220:intron 35.0%
GTAGGTCAAATGAAGGTAAA+GGG + chr7_3:2559288-2559307 None:intergenic 35.0%
AGTAGGTCAAATGAAGGTAA+AGG + chr7_3:2559289-2559308 None:intergenic 35.0%
! AACACTCCAACCTGAATTTT+GGG + chr7_3:2559409-2559428 None:intergenic 35.0%
GAATAAGCCAGTTAGAATTC+TGG - chr7_3:2559477-2559496 Msa1089220:intron 35.0%
AAAAATGACACTCTGAGTGA+TGG + chr7_3:2559608-2559627 None:intergenic 35.0%
!!! GTGTCATTTTTGTGAACACA+AGG - chr7_3:2559617-2559636 Msa1089220:intron 35.0%
! TGATGATATCACGAGTGTTT+TGG + chr7_3:2559717-2559736 None:intergenic 35.0%
!!! ATGGAGATAGTTTTCAGGTT+GGG + chr7_3:2559848-2559867 None:intergenic 35.0%
! ATACGATGGAGATAGTTTTC+AGG + chr7_3:2559853-2559872 None:intergenic 35.0%
GAAAACTATCTCCATCGTAT+TGG - chr7_3:2559853-2559872 Msa1089220:intron 35.0%
GTTCTATAATGTGATCGTAG+AGG - chr7_3:2559960-2559979 Msa1089220:intron 35.0%
AGTAGATCAGCAACATTTGA+AGG + chr7_3:2559991-2560010 None:intergenic 35.0%
TGTTCTTTGTTAAGTCATCG+GGG - chr7_3:2560027-2560046 Msa1089220:intron 35.0%
CAGATGTCTTTGAACTCTAA+TGG + chr7_3:2560110-2560129 None:intergenic 35.0%
AAATAAGGGTTGCTAGCATA+AGG + chr7_3:2560241-2560260 None:intergenic 35.0%
GAAGAGTGAGAGAGAGATTT+AGG + chr7_3:2557085-2557104 None:intergenic 40.0%
CATCTTAGTGTCAAACTGCT+TGG + chr7_3:2557921-2557940 None:intergenic 40.0%
AATTACAGGCTTTCCACTGA+AGG - chr7_3:2558020-2558039 Msa1089220:intron 40.0%
GAAGAATTCTTGTCCTTCAG+TGG + chr7_3:2558036-2558055 None:intergenic 40.0%
! CTGAGAGGCATATATGCTTA+TGG - chr7_3:2558113-2558132 Msa1089220:intron 40.0%
!!! TTATTTTTAGACAGGGGGCT+TGG - chr7_3:2558323-2558342 Msa1089220:CDS 40.0%
CAAGAACAGAACATCACACA+TGG + chr7_3:2558667-2558686 None:intergenic 40.0%
ACATCGAGACCCTTGATAAA+AGG + chr7_3:2558739-2558758 None:intergenic 40.0%
!! TGGTGATTACCTTGGTGTTA+AGG - chr7_3:2558912-2558931 Msa1089220:intron 40.0%
AAGCATGAACCTTAACACCA+AGG + chr7_3:2558924-2558943 None:intergenic 40.0%
GTTAAGGTTCATGCTTGTGT+TGG - chr7_3:2558928-2558947 Msa1089220:intron 40.0%
AATGCTTTCACGTGGTTTCA+AGG - chr7_3:2559098-2559117 Msa1089220:intron 40.0%
GAACTGAATTTGGTTGGAGT+TGG - chr7_3:2559149-2559168 Msa1089220:intron 40.0%
GTGAGAAGTAGGTCAAATGA+AGG + chr7_3:2559295-2559314 None:intergenic 40.0%
CAATTCATCTGGTGAGAAGT+AGG + chr7_3:2559306-2559325 None:intergenic 40.0%
! GAACACTCCAACCTGAATTT+TGG + chr7_3:2559410-2559429 None:intergenic 40.0%
CGCTTTACCAGAATTCTAAC+TGG + chr7_3:2559487-2559506 None:intergenic 40.0%
GTTCTACGTGAATGTTGACA+AGG - chr7_3:2559537-2559556 Msa1089220:intron 40.0%
TGAATGTTGACAAGGAAGAG+TGG - chr7_3:2559545-2559564 Msa1089220:intron 40.0%
GTGTGATCTTTATGAGACTC+TGG - chr7_3:2559582-2559601 Msa1089220:intron 40.0%
! TCTCATTACCACTGACCTTT+TGG - chr7_3:2559768-2559787 Msa1089220:intron 40.0%
TTGCTGAACATCAATACCAC+GGG + chr7_3:2559794-2559813 None:intergenic 40.0%
CTTGCTGAACATCAATACCA+CGG + chr7_3:2559795-2559814 None:intergenic 40.0%
!!! AGATAGTTTTCAGGTTGGGT+AGG + chr7_3:2559844-2559863 None:intergenic 40.0%
!!! GATGGAGATAGTTTTCAGGT+TGG + chr7_3:2559849-2559868 None:intergenic 40.0%
TGCTATCAACTTCGTCACAT+TGG - chr7_3:2559906-2559925 Msa1089220:intron 40.0%
ATTGGAAGATGCAAGAATGC+TGG - chr7_3:2559924-2559943 Msa1089220:intron 40.0%
GTTCTTTGTTAAGTCATCGG+GGG - chr7_3:2560028-2560047 Msa1089220:intron 40.0%
TTCTTTGTTAAGTCATCGGG+GGG - chr7_3:2560029-2560048 Msa1089220:intron 40.0%
TTAGGGTTTCCCAAACTCCT+CGG + chr7_3:2557130-2557149 None:intergenic 45.0%
GAGATACGTATACCTGCTTG+TGG + chr7_3:2557208-2557227 None:intergenic 45.0%
TATAGCCCCATGCTTGTCAT+TGG - chr7_3:2558410-2558429 Msa1089220:CDS 45.0%
TCACACATGGTATGCTAGTG+AGG + chr7_3:2558654-2558673 None:intergenic 45.0%
AGCCATCTGCAATACAGCAA+AGG - chr7_3:2558704-2558723 Msa1089220:intron 45.0%
GCCATCTGCAATACAGCAAA+GGG - chr7_3:2558705-2558724 Msa1089220:intron 45.0%
CCATCTGCAATACAGCAAAG+GGG - chr7_3:2558706-2558725 Msa1089220:intron 45.0%
GCAGCAGCTTGATTATGGTT+TGG - chr7_3:2558816-2558835 Msa1089220:intron 45.0%
!! TTATGGTTTGGTTCAGTGCC+AGG - chr7_3:2558828-2558847 Msa1089220:intron 45.0%
!!! TTTGGTTTTGGCCCCAACAA+GGG - chr7_3:2558852-2558871 Msa1089220:intron 45.0%
!! GAGAAGGTTATGAGAGCACT+TGG - chr7_3:2558892-2558911 Msa1089220:intron 45.0%
! AGAGCACTTGGTGATTACCT+TGG - chr7_3:2558904-2558923 Msa1089220:intron 45.0%
AAGGTTCATGCTTGTGTTGG+TGG - chr7_3:2558931-2558950 Msa1089220:intron 45.0%
GATCAGCGTATTCTCCAAAC+TGG - chr7_3:2558970-2558989 Msa1089220:intron 45.0%
CAACAACATGGACACCAGTT+TGG + chr7_3:2558987-2559006 None:intergenic 45.0%
ACTGGTGTCCATGTTGTTGT+TGG - chr7_3:2558988-2559007 Msa1089220:intron 45.0%
!! CAGGAGTACCAACAACAACA+TGG + chr7_3:2558999-2559018 None:intergenic 45.0%
! CATGTTGTTGTTGGTACTCC+TGG - chr7_3:2558997-2559016 Msa1089220:intron 45.0%
GCTGATGAAATGCTTTCACG+TGG - chr7_3:2559090-2559109 Msa1089220:intron 45.0%
! ACTCCAACCTGAATTTTGGG+TGG + chr7_3:2559406-2559425 None:intergenic 45.0%
CGTGATGAATTGACCCTTGA+GGG - chr7_3:2559505-2559524 Msa1089220:intron 45.0%
GAACTGCTTGATACCCTCAA+GGG + chr7_3:2559521-2559540 None:intergenic 45.0%
AGAACTGCTTGATACCCTCA+AGG + chr7_3:2559522-2559541 None:intergenic 45.0%
! TTTTGTGAACACAAGGCGCA+AGG - chr7_3:2559624-2559643 Msa1089220:intron 45.0%
!! GTTTTGGTCCATGTCTCCAT+GGG + chr7_3:2559701-2559720 None:intergenic 45.0%
!!! TGTTTTGGTCCATGTCTCCA+TGG + chr7_3:2559702-2559721 None:intergenic 45.0%
TGATGTTCAGCAAGTGTCTC+TGG - chr7_3:2559801-2559820 Msa1089220:intron 45.0%
!!! AGTGGGCGTTTTGGAAGAAA+AGG - chr7_3:2559880-2559899 Msa1089220:intron 45.0%
!!! TTTTTTTTTTTTTGTAAATT+TGG - chr7_3:2557651-2557670 Msa1089220:CDS 5.0%
CACTCTTCCCTTCAACTCCA+CGG - chr7_3:2557097-2557116 Msa1089220:three_prime_UTR 50.0%
! TCTGGGGATGCCTTTGTTGT+TGG - chr7_3:2557779-2557798 Msa1089220:CDS 50.0%
! AGTCATGGCAGGTTTAGCTC+CGG - chr7_3:2557877-2557896 Msa1089220:CDS 50.0%
! CCCCTTTGCTGTATTGCAGA+TGG + chr7_3:2558709-2558728 None:intergenic 50.0%
AAGACAGCGACGTTCTGTTC+TGG - chr7_3:2558787-2558806 Msa1089220:intron 50.0%
! TTTGGTTCAGTGCCAGGCTT+TGG - chr7_3:2558834-2558853 Msa1089220:intron 50.0%
!! TCAGTGCCAGGCTTTGGTTT+TGG - chr7_3:2558840-2558859 Msa1089220:intron 50.0%
!!! CTTTGGTTTTGGCCCCAACA+AGG - chr7_3:2558851-2558870 Msa1089220:intron 50.0%
AGCATGTCAAACACACGTCC+AGG + chr7_3:2559018-2559037 None:intergenic 50.0%
TGCTGCGAAGACAGTCTCTT+CGG - chr7_3:2559034-2559053 Msa1089220:intron 50.0%
TTCACGTGGTTTCAAGGACC+AGG - chr7_3:2559104-2559123 Msa1089220:intron 50.0%
!! GAATTTTGGGTGGCAGCAAC+TGG + chr7_3:2559396-2559415 None:intergenic 50.0%
GTTGCTGCCACCCAAAATTC+AGG - chr7_3:2559396-2559415 Msa1089220:CDS 50.0%
CTGCCACCCAAAATTCAGGT+TGG - chr7_3:2559400-2559419 Msa1089220:CDS 50.0%
GCGTGATGAATTGACCCTTG+AGG - chr7_3:2559504-2559523 Msa1089220:intron 50.0%
ATCATGCGTGAATTCCGCTC+TGG - chr7_3:2559733-2559752 Msa1089220:intron 50.0%
CATCAATACCACGGGCCAAA+AGG + chr7_3:2559786-2559805 None:intergenic 50.0%
TCCATCGTATTGGGCGAAGT+GGG - chr7_3:2559863-2559882 Msa1089220:intron 50.0%
ATCTGCGCCGTGGAGTTGAA+GGG + chr7_3:2557107-2557126 None:intergenic 55.0%
TCTTCGCTCACTCCACAAGC+AGG - chr7_3:2557193-2557212 Msa1089220:three_prime_UTR 55.0%
! ATGGCAGGTTTAGCTCCGGA+AGG - chr7_3:2557881-2557900 Msa1089220:CDS 55.0%
GGGTCTCGATGTGATTCAGC+AGG - chr7_3:2558747-2558766 Msa1089220:intron 55.0%
GTGATTCAGCAGGCTCAGTC+AGG - chr7_3:2558757-2558776 Msa1089220:intron 55.0%
TTGGGGCCAAAACCAAAGCC+TGG + chr7_3:2558849-2558868 None:intergenic 55.0%
GCTGGCACAGCAGATTGAGA+AGG - chr7_3:2558876-2558895 Msa1089220:intron 55.0%
TGGTGGCACTAGTGTTCGTG+AGG - chr7_3:2558948-2558967 Msa1089220:intron 55.0%
CTCTGCTACAATGCCTCCAG+AGG - chr7_3:2559429-2559448 Msa1089220:CDS 55.0%
TACAATGCCTCCAGAGGCTC+TGG - chr7_3:2559435-2559454 Msa1089220:CDS 55.0%
CTTGTGATCTCCAGAGCCTC+TGG + chr7_3:2559448-2559467 None:intergenic 55.0%
!! CAGAGGCTCTGGAGATCACA+AGG - chr7_3:2559446-2559465 Msa1089220:intron 55.0%
TGTGAACACAAGGCGCAAGG+TGG - chr7_3:2559627-2559646 Msa1089220:intron 55.0%
TGGCTCACTGACAAGATGCG+AGG - chr7_3:2559652-2559671 Msa1089220:intron 55.0%
CATGGGTGGCTGAGACAGTA+TGG + chr7_3:2559684-2559703 None:intergenic 55.0%
CATACTGTCTCAGCCACCCA+TGG - chr7_3:2559682-2559701 Msa1089220:intron 55.0%
TTGGTCCATGTCTCCATGGG+TGG + chr7_3:2559698-2559717 None:intergenic 55.0%
GAACTCGAGAAGAGCCAGAG+CGG + chr7_3:2559750-2559769 None:intergenic 55.0%
CTCCATCGTATTGGGCGAAG+TGG - chr7_3:2559862-2559881 Msa1089220:intron 55.0%
! ATTGGGCGAAGTGGGCGTTT+TGG - chr7_3:2559871-2559890 Msa1089220:intron 55.0%
GATCTGCGCCGTGGAGTTGA+AGG + chr7_3:2557108-2557127 None:intergenic 60.0%
GGCGCAGATCCGAGGAGTTT+GGG - chr7_3:2557118-2557137 Msa1089220:three_prime_UTR 60.0%
CAGCAGGCTCAGTCAGGAAC+TGG - chr7_3:2558763-2558782 Msa1089220:intron 60.0%
TTTGGCCCCAACAAGGGAGC+TGG - chr7_3:2558858-2558877 Msa1089220:intron 60.0%
CTGTGCCAGCTCCCTTGTTG+GGG + chr7_3:2558866-2558885 None:intergenic 60.0%
GCTGTGCCAGCTCCCTTGTT+GGG + chr7_3:2558867-2558886 None:intergenic 60.0%
TGCTGTGCCAGCTCCCTTGT+TGG + chr7_3:2558868-2558887 None:intergenic 60.0%
GTGATCTCCAGAGCCTCTGG+AGG + chr7_3:2559445-2559464 None:intergenic 60.0%
ACACAAGGCGCAAGGTGGAC+TGG - chr7_3:2559632-2559651 Msa1089220:intron 60.0%
CTCAGCCACCCATGGAGACA+TGG - chr7_3:2559690-2559709 Msa1089220:intron 60.0%
! ACCACTGACCTTTTGGCCCG+TGG - chr7_3:2559775-2559794 Msa1089220:intron 60.0%
ACCACGGGCCAAAAGGTCAG+TGG + chr7_3:2559779-2559798 None:intergenic 60.0%
GCCCACTTCGCCCAATACGA+TGG + chr7_3:2559867-2559886 None:intergenic 60.0%
AACTCCACGGCGCAGATCCG+AGG - chr7_3:2557110-2557129 Msa1089220:three_prime_UTR 65.0%
AACTCCTCGGATCTGCGCCG+TGG + chr7_3:2557117-2557136 None:intergenic 65.0%
CGGCGCAGATCCGAGGAGTT+TGG - chr7_3:2557117-2557136 Msa1089220:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 2557021 2560316 2557021 ID=Msa1089220;Name=Msa1089220
chr7_3 mRNA 2557021 2560316 2557021 ID=Msa1089220-mRNA-1;Parent=Msa1089220;Name=Msa1089220-mRNA-1;_AED=0.05;_eAED=0.05;_QI=196|1|1|1|0.75|0.6|5|302|413
chr7_3 exon 2557021 2557958 2557021 ID=Msa1089220-mRNA-1:exon:1084;Parent=Msa1089220-mRNA-1
chr7_3 exon 2558212 2558642 2558212 ID=Msa1089220-mRNA-1:exon:1083;Parent=Msa1089220-mRNA-1
chr7_3 exon 2559203 2559309 2559203 ID=Msa1089220-mRNA-1:exon:1082;Parent=Msa1089220-mRNA-1
chr7_3 exon 2559389 2559458 2559389 ID=Msa1089220-mRNA-1:exon:1081;Parent=Msa1089220-mRNA-1
chr7_3 exon 2560123 2560316 2560123 ID=Msa1089220-mRNA-1:exon:1080;Parent=Msa1089220-mRNA-1
chr7_3 five_prime_UTR 2560123 2560316 2560123 ID=Msa1089220-mRNA-1:five_prime_utr;Parent=Msa1089220-mRNA-1
chr7_3 five_prime_UTR 2559457 2559458 2559457 ID=Msa1089220-mRNA-1:five_prime_utr;Parent=Msa1089220-mRNA-1
chr7_3 CDS 2559389 2559456 2559389 ID=Msa1089220-mRNA-1:cds;Parent=Msa1089220-mRNA-1
chr7_3 CDS 2559203 2559309 2559203 ID=Msa1089220-mRNA-1:cds;Parent=Msa1089220-mRNA-1
chr7_3 CDS 2558212 2558642 2558212 ID=Msa1089220-mRNA-1:cds;Parent=Msa1089220-mRNA-1
chr7_3 CDS 2557323 2557958 2557323 ID=Msa1089220-mRNA-1:cds;Parent=Msa1089220-mRNA-1
chr7_3 three_prime_UTR 2557021 2557322 2557021 ID=Msa1089220-mRNA-1:three_prime_utr;Parent=Msa1089220-mRNA-1
Gene Sequence

>Msa1089220

ATGGCAGGTTTAGCTCCGGAAGGTTCACAATTTGATACCAAGCAGTTTGACACTAAGATGAATGAATTGCTTTCCACTGAAGGACAAGAATTCTTCACCTCATACGATGAAGTTCATGAAACTTTTGATGCAATGGGATTGATAGAAAATCTTCTGAGAGGCATATATGCTTATGGTTTTGAGAAGCCATCTGCAATACAGCAAAGGGGAATTGTTCCTTTTATCAAGGGTCTCGATGTGATTCAGCAGGCTCAGTCAGGAACTGGAAAGACAGCGACGTTCTGTTCTGGAATTTTGCAGCAGCTTGATTATGGTTTGGTTCAGTGCCAGGCTTTGGTTTTGGCCCCAACAAGGGAGCTGGCACAGCAGATTGAGAAGGTTATGAGAGCACTTGGTGATTACCTTGGTGTTAAGGTTCATGCTTGTGTTGGTGGCACTAGTGTTCGTGAGGATCAGCGTATTCTCCAAACTGGTGTCCATGTTGTTGTTGGTACTCCTGGACGTGTGTTTGACATGCTGCGAAGACAGTCTCTTCGGTCAGATTGCATTAAAATGTTTGTTTTGGATGAAGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTACGACATCTTCCAGTTGCTGCCACCCAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCTCCAGAGGCTCTGGAGATCACAAGGAAGTTCATGAATAAGCCAGTTAGAATTCTGGTAAAGCGTGATGAATTGACCCTTGAGGGTATCAAGCAGTTCTACGTGAATGTTGACAAGGAAGAGTGGAAACTAGAGACATTGTGTGATCTTTATGAGACTCTGGCCATCACTCAGAGTGTCATTTTTGTGAACACAAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAGGCAGAGACCATACTGTCTCAGCCACCCATGGAGACATGGACCAAAACACTCGTGATATCATCATGCGTGAATTCCGCTCTGGCTCTTCTCGAGTTCTCATTACCACTGACCTTTTGGCCCGTGGTATTGATGTTCAGCAAGTGTCTCTGGTCATAAATTATGATTTGCCTACCCAACCTGAAAACTATCTCCATCGTATTGGGCGAAGTGGGCGTTTTGGAAGAAAAGGTGTTGCTATCAACTTCGTCACATTGGAAGATGCAAGAATGCTGGCTGATATTCAGAAGTTCTATAATGTGATCGTAGAGGAACTGCCTTCAAATGTTGCTGATCTACTCTGA
Protein sequence

>Msa1089220

MAGLAPEGSQFDTKQFDTKMNELLSTEGQEFFTSYDEVHETFDAMGLIENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQTGVHVVVGTPGRVFDMLRRQSLRSDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLEDARMLADIQKFYNVIVEELPSNVADLL*