Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426370 | XP_003624883.1 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 1.48e-142 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426370 | sp|Q9M612|NACA_PINTA | 74.359 | 195 | 43 | 4 | 11 | 203 | 16 | 205 | 1.40e-83 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426370 | G7L4T7 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 7.07e-143 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa1426370 | 0.848977 | 4.343991e-60 | -8.615850e-47 |
| Msa0002790 | Msa1426370 | 0.875659 | 2.588648e-68 | -8.615850e-47 |
| Msa0003870 | Msa1426370 | 0.804131 | 2.503349e-49 | -8.615850e-47 |
| Msa0007850 | Msa1426370 | 0.807450 | 5.023975e-50 | -8.615850e-47 |
| Msa0019390 | Msa1426370 | 0.801702 | 7.947802e-49 | -8.615850e-47 |
| Msa0022970 | Msa1426370 | 0.847244 | 1.307082e-59 | -8.615850e-47 |
| Msa0029180 | Msa1426370 | 0.805481 | 1.307431e-49 | -8.615850e-47 |
| Msa0029260 | Msa1426370 | 0.813456 | 2.536956e-51 | -8.615850e-47 |
| Msa0032810 | Msa1426370 | 0.836570 | 8.659072e-57 | -8.615850e-47 |
| Msa0033880 | Msa1426370 | 0.845876 | 3.088235e-59 | -8.615850e-47 |
| Msa0042280 | Msa1426370 | 0.809236 | 2.090314e-50 | -8.615850e-47 |
| Msa0042480 | Msa1426370 | 0.827066 | 1.920221e-54 | -8.615850e-47 |
| Msa0045730 | Msa1426370 | 0.846319 | 2.341111e-59 | -8.615850e-47 |
| Msa0047160 | Msa1426370 | 0.811356 | 7.292267e-51 | -8.615850e-47 |
| Msa0048180 | Msa1426370 | 0.832531 | 8.962896e-56 | -8.615850e-47 |
| Msa0068020 | Msa1426370 | 0.806893 | 6.594908e-50 | -8.615850e-47 |
| Msa0074030 | Msa1426370 | 0.830638 | 2.623300e-55 | -8.615850e-47 |
| Msa0077010 | Msa1426370 | 0.811580 | 6.520141e-51 | -8.615850e-47 |
| Msa0086750 | Msa1426370 | 0.805381 | 1.372011e-49 | -8.615850e-47 |
| Msa0110400 | Msa1426370 | 0.800468 | 1.421057e-48 | -8.615850e-47 |
| Msa0113240 | Msa1426370 | 0.824739 | 6.856002e-54 | -8.615850e-47 |
| Msa0116130 | Msa1426370 | 0.879252 | 1.450082e-69 | -8.615850e-47 |
| Msa0116670 | Msa1426370 | 0.894203 | 3.074768e-75 | -8.615850e-47 |
| Msa0118710 | Msa1426370 | 0.872040 | 4.313921e-67 | -8.615850e-47 |
| Msa1349570 | Msa1426370 | 0.908407 | 1.767970e-81 | -8.615850e-47 |
| Msa1351540 | Msa1426370 | 0.825059 | 5.761377e-54 | -8.615850e-47 |
| Msa1356790 | Msa1426370 | 0.861705 | 8.500952e-64 | -8.615850e-47 |
| Msa1362790 | Msa1426370 | 0.808686 | 2.741605e-50 | -8.615850e-47 |
| Msa1363330 | Msa1426370 | 0.840329 | 9.287266e-58 | -8.615850e-47 |
| Msa1366180 | Msa1426370 | 0.845608 | 3.651923e-59 | -8.615850e-47 |
| Msa1368920 | Msa1426370 | 0.804911 | 1.720602e-49 | -8.615850e-47 |
| Msa1369190 | Msa1426370 | 0.890333 | 1.083453e-73 | -8.615850e-47 |
| Msa1374170 | Msa1426370 | 0.836648 | 8.271360e-57 | -8.615850e-47 |
| Msa1374240 | Msa1426370 | 0.824168 | 9.339264e-54 | -8.615850e-47 |
| Msa1379760 | Msa1426370 | 0.819389 | 1.191760e-52 | -8.615850e-47 |
| Msa1382670 | Msa1426370 | 0.839675 | 1.375056e-57 | -8.615850e-47 |
| Msa1386600 | Msa1426370 | 0.840582 | 7.973993e-58 | -8.615850e-47 |
| Msa1387410 | Msa1426370 | 0.862804 | 3.910530e-64 | -8.615850e-47 |
| Msa1392590 | Msa1426370 | 0.842261 | 2.881507e-58 | -8.615850e-47 |
| Msa1397100 | Msa1426370 | 0.802824 | 4.669292e-49 | -8.615850e-47 |
| Msa1403910 | Msa1426370 | 0.829185 | 5.929853e-55 | -8.615850e-47 |
| Msa1406080 | Msa1426370 | 0.835029 | 2.128585e-56 | -8.615850e-47 |
| Msa1413500 | Msa1426370 | 0.916836 | 1.102835e-85 | -8.615850e-47 |
| Msa1426120 | Msa1426370 | 0.828225 | 1.011802e-54 | -8.615850e-47 |
| Msa1426370 | Msa1426490 | 0.911484 | 5.771688e-83 | -8.615850e-47 |
| Msa1426370 | Msa1427560 | 0.837919 | 3.911364e-57 | -8.615850e-47 |
| Msa1426370 | Msa1450280 | 0.829439 | 5.143559e-55 | -8.615850e-47 |
| Msa1426370 | Msa1456050 | 0.814827 | 1.263434e-51 | -8.615850e-47 |
| Msa1426370 | Msa1462860 | 0.813137 | 2.980529e-51 | -8.615850e-47 |
| Msa1426370 | Msa1465260 | 0.852452 | 4.573813e-61 | -8.615850e-47 |
| Msa0603320 | Msa1426370 | 0.810956 | 8.908005e-51 | -8.615850e-47 |
| Msa0610390 | Msa1426370 | 0.802672 | 5.020031e-49 | -8.615850e-47 |
| Msa0615580 | Msa1426370 | 0.864731 | 9.849308e-65 | -8.615850e-47 |
| Msa0623200 | Msa1426370 | 0.848350 | 6.482260e-60 | -8.615850e-47 |
| Msa0633570 | Msa1426370 | 0.835193 | 1.935509e-56 | -8.615850e-47 |
| Msa0654870 | Msa1426370 | 0.817292 | 3.556922e-52 | -8.615850e-47 |
| Msa0666230 | Msa1426370 | 0.878966 | 1.829939e-69 | -8.615850e-47 |
| Msa0672100 | Msa1426370 | 0.801725 | 7.863124e-49 | -8.615850e-47 |
| Msa0705800 | Msa1426370 | 0.822422 | 2.389662e-53 | -8.615850e-47 |
| Msa0706500 | Msa1426370 | 0.806676 | 7.327948e-50 | -8.615850e-47 |
| Msa0712610 | Msa1426370 | 0.865218 | 6.925857e-65 | -8.615850e-47 |
| Msa0717380 | Msa1426370 | 0.830078 | 3.596079e-55 | -8.615850e-47 |
| Msa0719420 | Msa1426370 | 0.844861 | 5.814855e-59 | -8.615850e-47 |
| Msa0719610 | Msa1426370 | 0.801234 | 9.912786e-49 | -8.615850e-47 |
| Msa0729200 | Msa1426370 | 0.926164 | 6.823951e-91 | -8.615850e-47 |
| Msa0738100 | Msa1426370 | 0.839895 | 1.204865e-57 | -8.615850e-47 |
| Msa0763330 | Msa1426370 | 0.800940 | 1.138287e-48 | -8.615850e-47 |
| Msa0766080 | Msa1426370 | 0.826546 | 2.556176e-54 | -8.615850e-47 |
| Msa0769590 | Msa1426370 | 0.926502 | 4.294675e-91 | -8.615850e-47 |
| Msa0781080 | Msa1426370 | 0.832550 | 8.866746e-56 | -8.615850e-47 |
| Msa0781310 | Msa1426370 | 0.807239 | 5.570619e-50 | -8.615850e-47 |
| Msa0783630 | Msa1426370 | 0.824326 | 8.576671e-54 | -8.615850e-47 |
| Msa0785130 | Msa1426370 | 0.880228 | 6.523451e-70 | -8.615850e-47 |
| Msa0789680 | Msa1426370 | 0.841000 | 6.195888e-58 | -8.615850e-47 |
| Msa0802410 | Msa1426370 | 0.814271 | 1.676919e-51 | -8.615850e-47 |
| Msa0806880 | Msa1426370 | 0.921512 | 3.253658e-88 | -8.615850e-47 |
| Msa0817540 | Msa1426370 | 0.875830 | 2.260958e-68 | -8.615850e-47 |
| Msa0827380 | Msa1426370 | 0.827512 | 1.501513e-54 | -8.615850e-47 |
| Msa0126840 | Msa1426370 | 0.846758 | 1.775997e-59 | -8.615850e-47 |
| Msa0127040 | Msa1426370 | 0.808733 | 2.679455e-50 | -8.615850e-47 |
| Msa0127850 | Msa1426370 | 0.829225 | 5.797855e-55 | -8.615850e-47 |
| Msa0128860 | Msa1426370 | 0.818009 | 2.450704e-52 | -8.615850e-47 |
| Msa0133540 | Msa1426370 | 0.861571 | 9.346479e-64 | -8.615850e-47 |
| Msa0138890 | Msa1426370 | 0.825774 | 3.901512e-54 | -8.615850e-47 |
| Msa0146420 | Msa1426370 | 0.822616 | 2.154044e-53 | -8.615850e-47 |
| Msa0163760 | Msa1426370 | 0.888674 | 4.787673e-73 | -8.615850e-47 |
| Msa0167480 | Msa1426370 | 0.851412 | 9.027650e-61 | -8.615850e-47 |
| Msa0169300 | Msa1426370 | 0.811202 | 7.875827e-51 | -8.615850e-47 |
| Msa0171940 | Msa1426370 | 0.838647 | 2.539463e-57 | -8.615850e-47 |
| Msa0172930 | Msa1426370 | 0.806580 | 7.676964e-50 | -8.615850e-47 |
| Msa0173530 | Msa1426370 | 0.893806 | 4.457902e-75 | -8.615850e-47 |
| Msa0174000 | Msa1426370 | 0.843489 | 1.358306e-58 | -8.615850e-47 |
| Msa0174730 | Msa1426370 | 0.815856 | 7.460299e-52 | -8.615850e-47 |
| Msa0179030 | Msa1426370 | 0.819331 | 1.228381e-52 | -8.615850e-47 |
| Msa0181490 | Msa1426370 | 0.862325 | 5.489753e-64 | -8.615850e-47 |
| Msa0188350 | Msa1426370 | 0.805054 | 1.606456e-49 | -8.615850e-47 |
| Msa0189700 | Msa1426370 | 0.803909 | 2.783643e-49 | -8.615850e-47 |
| Msa0192230 | Msa1426370 | 0.806207 | 9.199908e-50 | -8.615850e-47 |
| Msa0210360 | Msa1426370 | 0.848485 | 5.948977e-60 | -8.615850e-47 |
| Msa0218720 | Msa1426370 | 0.812488 | 4.133618e-51 | -8.615850e-47 |
| Msa0218830 | Msa1426370 | 0.908437 | 1.710533e-81 | -8.615850e-47 |
| Msa0219120 | Msa1426370 | 0.846606 | 1.954711e-59 | -8.615850e-47 |
| Msa0221030 | Msa1426370 | 0.884561 | 1.726714e-71 | -8.615850e-47 |
| Msa0224560 | Msa1426370 | 0.811924 | 5.488331e-51 | -8.615850e-47 |
| Msa0230490 | Msa1426370 | 0.816165 | 6.365988e-52 | -8.615850e-47 |
| Msa0230520 | Msa1426370 | 0.847972 | 8.244581e-60 | -8.615850e-47 |
| Msa0231100 | Msa1426370 | 0.857859 | 1.224766e-62 | -8.615850e-47 |
| Msa0231660 | Msa1426370 | 0.801835 | 7.463287e-49 | -8.615850e-47 |
| Msa1230580 | Msa1426370 | 0.810936 | 8.996417e-51 | -8.615850e-47 |
| Msa1241190 | Msa1426370 | 0.815229 | 1.028936e-51 | -8.615850e-47 |
| Msa1260530 | Msa1426370 | 0.827237 | 1.748287e-54 | -8.615850e-47 |
| Msa1262890 | Msa1426370 | 0.817245 | 3.644039e-52 | -8.615850e-47 |
| Msa1265630 | Msa1426370 | 0.812177 | 4.833278e-51 | -8.615850e-47 |
| Msa1270620 | Msa1426370 | 0.803374 | 3.594782e-49 | -8.615850e-47 |
| Msa1305050 | Msa1426370 | 0.804672 | 1.930463e-49 | -8.615850e-47 |
| Msa1331250 | Msa1426370 | 0.844089 | 9.383627e-59 | -8.615850e-47 |
| Msa1331710 | Msa1426370 | 0.862005 | 6.882886e-64 | -8.615850e-47 |
| Msa1332250 | Msa1426370 | 0.839892 | 1.207599e-57 | -8.615850e-47 |
| Msa1338190 | Msa1426370 | 0.815911 | 7.250928e-52 | -8.615850e-47 |
| Msa1343260 | Msa1426370 | 0.816259 | 6.063885e-52 | -8.615850e-47 |
| Msa0393550 | Msa1426370 | 0.819069 | 1.409438e-52 | -8.615850e-47 |
| Msa0437020 | Msa1426370 | 0.801414 | 9.107037e-49 | -8.615850e-47 |
| Msa0443390 | Msa1426370 | 0.883695 | 3.607572e-71 | -8.615850e-47 |
| Msa0992550 | Msa1426370 | 0.819012 | 1.451864e-52 | -8.615850e-47 |
| Msa1019240 | Msa1426370 | 0.858320 | 8.933305e-63 | -8.615850e-47 |
| Msa1019260 | Msa1426370 | 0.850442 | 1.693654e-60 | -8.615850e-47 |
| Msa1021120 | Msa1426370 | 0.814069 | 1.858783e-51 | -8.615850e-47 |
| Msa1037290 | Msa1426370 | 0.806619 | 7.532662e-50 | -8.615850e-47 |
| Msa1043630 | Msa1426370 | 0.843373 | 1.458604e-58 | -8.615850e-47 |
| Msa1048690 | Msa1426370 | 0.842414 | 2.623634e-58 | -8.615850e-47 |
| Msa1070390 | Msa1426370 | 0.801993 | 6.926306e-49 | -8.615850e-47 |
| Msa1072710 | Msa1426370 | 0.923174 | 3.756380e-89 | -8.615850e-47 |
| Msa1078870 | Msa1426370 | 0.813801 | 2.129964e-51 | -8.615850e-47 |
| Msa1078980 | Msa1426370 | 0.802047 | 6.751018e-49 | -8.615850e-47 |
| Msa1080350 | Msa1426370 | 0.819789 | 9.655699e-53 | -8.615850e-47 |
| Msa1088490 | Msa1426370 | 0.863450 | 2.468720e-64 | -8.615850e-47 |
| Msa1089220 | Msa1426370 | 0.810147 | 1.331937e-50 | -8.615850e-47 |
| Msa1100710 | Msa1426370 | 0.803939 | 2.743951e-49 | -8.615850e-47 |
| Msa1104140 | Msa1426370 | 0.805950 | 1.041958e-49 | -8.615850e-47 |
| Msa1104210 | Msa1426370 | 0.846253 | 2.439306e-59 | -8.615850e-47 |
| Msa0244780 | Msa1426370 | 0.805034 | 1.621624e-49 | -8.615850e-47 |
| Msa0245430 | Msa1426370 | 0.816015 | 6.876114e-52 | -8.615850e-47 |
| Msa0245580 | Msa1426370 | 0.832569 | 8.771616e-56 | -8.615850e-47 |
| Msa0257450 | Msa1426370 | 0.839340 | 1.680253e-57 | -8.615850e-47 |
| Msa0258850 | Msa1426370 | 0.823337 | 1.462280e-53 | -8.615850e-47 |
| Msa0262480 | Msa1426370 | 0.889600 | 2.095343e-73 | -8.615850e-47 |
| Msa0266370 | Msa1426370 | 0.800769 | 1.233524e-48 | -8.615850e-47 |
| Msa0269180 | Msa1426370 | 0.853647 | 2.080616e-61 | -8.615850e-47 |
| Msa0289580 | Msa1426370 | 0.831868 | 1.308112e-55 | -8.615850e-47 |
| Msa0289610 | Msa1426370 | 0.840146 | 1.036528e-57 | -8.615850e-47 |
| Msa0296250 | Msa1426370 | 0.834254 | 3.333027e-56 | -8.615850e-47 |
| Msa0296720 | Msa1426370 | 0.817019 | 4.097740e-52 | -8.615850e-47 |
| Msa0297830 | Msa1426370 | 0.830650 | 2.606588e-55 | -8.615850e-47 |
| Msa0298200 | Msa1426370 | 0.829129 | 6.116212e-55 | -8.615850e-47 |
| Msa0298870 | Msa1426370 | 0.803172 | 3.957258e-49 | -8.615850e-47 |
| Msa0300350 | Msa1426370 | 0.889780 | 1.782634e-73 | -8.615850e-47 |
| Msa0306690 | Msa1426370 | 0.885612 | 6.995588e-72 | -8.615850e-47 |
| Msa0317910 | Msa1426370 | 0.809201 | 2.127338e-50 | -8.615850e-47 |
| Msa0327300 | Msa1426370 | 0.854712 | 1.025701e-61 | -8.615850e-47 |
| Msa0332640 | Msa1426370 | 0.815045 | 1.130379e-51 | -8.615850e-47 |
| Msa0335840 | Msa1426370 | 0.833478 | 5.210714e-56 | -8.615850e-47 |
| Msa0348830 | Msa1426370 | 0.867930 | 9.519216e-66 | -8.615850e-47 |
| Msa0348990 | Msa1426370 | 0.800721 | 1.262122e-48 | -8.615850e-47 |
| Msa1115620 | Msa1426370 | 0.825949 | 3.546163e-54 | -8.615850e-47 |
| Msa1122820 | Msa1426370 | 0.801579 | 8.424877e-49 | -8.615850e-47 |
| Msa1125860 | Msa1426370 | 0.817133 | 3.861797e-52 | -8.615850e-47 |
| Msa1126060 | Msa1426370 | 0.809552 | 1.788057e-50 | -8.615850e-47 |
| Msa1126830 | Msa1426370 | 0.837589 | 4.753932e-57 | -8.615850e-47 |
| Msa1135890 | Msa1426370 | 0.809472 | 1.860753e-50 | -8.615850e-47 |
| Msa1165780 | Msa1426370 | 0.872891 | 2.244839e-67 | -8.615850e-47 |
| Msa1166870 | Msa1426370 | 0.869798 | 2.362611e-66 | -8.615850e-47 |
| Msa1186980 | Msa1426370 | 0.817991 | 2.474436e-52 | -8.615850e-47 |
| Msa1195300 | Msa1426370 | 0.830196 | 3.364617e-55 | -8.615850e-47 |
| Msa1202580 | Msa1426370 | 0.824762 | 6.772050e-54 | -8.615850e-47 |
| Msa1206260 | Msa1426370 | 0.803333 | 3.664551e-49 | -8.615850e-47 |
| Msa1208020 | Msa1426370 | 0.854286 | 1.361774e-61 | -8.615850e-47 |
| Msa1215820 | Msa1426370 | 0.848988 | 4.315346e-60 | -8.615850e-47 |
| Msa0483110 | Msa1426370 | 0.808216 | 3.453387e-50 | -8.615850e-47 |
| Msa0488820 | Msa1426370 | 0.814623 | 1.401887e-51 | -8.615850e-47 |
| Msa0526540 | Msa1426370 | 0.842915 | 1.930947e-58 | -8.615850e-47 |
| Msa0527150 | Msa1426370 | 0.831516 | 1.596959e-55 | -8.615850e-47 |
| Msa0531650 | Msa1426370 | 0.821816 | 3.302109e-53 | -8.615850e-47 |
| Msa0534750 | Msa1426370 | 0.853468 | 2.341921e-61 | -8.615850e-47 |
| Msa0550570 | Msa1426370 | 0.805805 | 1.117821e-49 | -8.615850e-47 |
| Msa0554290 | Msa1426370 | 0.809713 | 1.651600e-50 | -8.615850e-47 |
| Msa0561430 | Msa1426370 | 0.805676 | 1.190034e-49 | -8.615850e-47 |
| Msa0571920 | Msa1426370 | 0.813136 | 2.982426e-51 | -8.615850e-47 |
| Msa0576940 | Msa1426370 | 0.836418 | 9.468199e-57 | -8.615850e-47 |
| Msa0581110 | Msa1426370 | 0.833106 | 6.453431e-56 | -8.615850e-47 |
| Msa0581280 | Msa1426370 | 0.806034 | 1.000629e-49 | -8.615850e-47 |
| Msa0584030 | Msa1426370 | 0.834863 | 2.344097e-56 | -8.615850e-47 |
| Msa0584260 | Msa1426370 | 0.814938 | 1.194152e-51 | -8.615850e-47 |
| Msa0586420 | Msa1426370 | 0.815495 | 8.980101e-52 | -8.615850e-47 |
| Msa0588630 | Msa1426370 | -0.804471 | 2.126656e-49 | -8.615850e-47 |
| Msa0593700 | Msa1426370 | 0.838748 | 2.391690e-57 | -8.615850e-47 |
| Msa0596370 | Msa1426370 | 0.812249 | 4.662222e-51 | -8.615850e-47 |
| Msa0876170 | Msa1426370 | 0.833297 | 5.782523e-56 | -8.615850e-47 |
| Msa0881290 | Msa1426370 | 0.804333 | 2.271465e-49 | -8.615850e-47 |
| Msa0888810 | Msa1426370 | 0.855093 | 7.948368e-62 | -8.615850e-47 |
| Msa0913240 | Msa1426370 | 0.844358 | 7.945920e-59 | -8.615850e-47 |
| Msa0933300 | Msa1426370 | 0.819954 | 8.854680e-53 | -8.615850e-47 |
| Msa0945480 | Msa1426370 | 0.868203 | 7.774543e-66 | -8.615850e-47 |
| Msa0960830 | Msa1426370 | 0.812663 | 3.784850e-51 | -8.615850e-47 |
| Msa0968440 | Msa1426370 | 0.811042 | 8.530420e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426370 | MtrunA17_Chr7g0255421 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 1.36e-146 | 405 |
| Msa1426370 | MtrunA17_Chr3g0128041 | 72.185 | 151 | 36 | 2 | 59 | 203 | 77 | 227 | 1.21e-67 | 206 |
| Msa1426370 | MtrunA17_Chr3g0128051 | 69.333 | 150 | 41 | 2 | 59 | 203 | 69 | 218 | 6.82e-59 | 184 |
| Msa1426370 | MtrunA17_Chr3g0128591 | 56.303 | 119 | 41 | 3 | 87 | 203 | 390 | 499 | 5.19e-30 | 115 |
| Msa1426370 | MtrunA17_Chr3g0128571 | 78.571 | 42 | 9 | 0 | 161 | 202 | 21 | 62 | 2.42e-15 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426370 | AT3G12390.1 | 72.500 | 200 | 52 | 2 | 6 | 203 | 5 | 203 | 2.06e-77 | 231 |
| Msa1426370 | AT5G13850.1 | 70.000 | 210 | 50 | 3 | 1 | 203 | 1 | 204 | 1.11e-75 | 226 |
| Msa1426370 | AT3G49470.1 | 62.000 | 200 | 64 | 4 | 10 | 203 | 24 | 217 | 2.53e-67 | 206 |
| Msa1426370 | AT3G49470.2 | 61.622 | 185 | 60 | 3 | 16 | 194 | 29 | 208 | 1.36e-61 | 192 |
| Msa1426370 | AT4G10480.2 | 61.951 | 205 | 65 | 3 | 6 | 202 | 11 | 210 | 3.81e-61 | 190 |
| Msa1426370 | AT4G10480.1 | 69.737 | 152 | 36 | 2 | 59 | 202 | 62 | 211 | 7.24e-61 | 189 |
| Msa1426370 | AT1G33040.1 | 64.238 | 151 | 48 | 2 | 59 | 203 | 59 | 209 | 6.61e-59 | 184 |
Find 60 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTAGTACTTTAGATTT+TGG | 0.129061 | tig0025986:+52163 | Msa1426370:three_prime_UTR |
| CAAGAAGCTCTTCTTGGGTT+TGG | 0.250426 | tig0025986:-50238 | None:intergenic |
| AATTGTTCTTTATCACTCTT+AGG | 0.277741 | tig0025986:+52453 | Msa1426370:three_prime_UTR |
| TCTGACACCTACATTATATT+CGG | 0.304764 | tig0025986:+51867 | Msa1426370:CDS |
| TCGTCTACATCCTCATCTTC+TGG | 0.324398 | tig0025986:-52002 | None:intergenic |
| GCACCCGCATTGGTCAAATT+AGG | 0.324435 | tig0025986:-51954 | None:intergenic |
| GAGCAGCAAGAAGCTCTTCT+TGG | 0.330866 | tig0025986:-50244 | None:intergenic |
| AAGAAGCTCTTCTTGGGTTT+GGG | 0.331123 | tig0025986:-50237 | None:intergenic |
| GGAGCAATACCAGAGGATTC+TGG | 0.349709 | tig0025986:-51981 | None:intergenic |
| TCGCCAAAGGATTTGAAAAC+AGG | 0.355884 | tig0025986:-52508 | None:intergenic |
| GCTTTAACAGCTCTTGATCT+TGG | 0.356165 | tig0025986:-52077 | None:intergenic |
| AGACATTGTTGCTGCCATTA+TGG | 0.359211 | tig0025986:+52118 | Msa1426370:CDS |
| TGTTGTTTGTGTGTTGTGTT+TGG | 0.361003 | tig0025986:+50160 | Msa1426370:five_prime_UTR |
| CTATGATCCGCTGTCATTCT+CGG | 0.364749 | tig0025986:-52357 | None:intergenic |
| CTTGGAATGAAAGCTGTTAC+TGG | 0.368859 | tig0025986:+51667 | Msa1426370:CDS |
| TCTTGTTGGGTTTGAAATAG+TGG | 0.369516 | tig0025986:+52229 | Msa1426370:three_prime_UTR |
| GTTGGACTCTTGAAAACATC+TGG | 0.370830 | tig0025986:-51843 | None:intergenic |
| TTCTTGGGTTTGGGCAGTCA+TGG | 0.386669 | tig0025986:-50228 | None:intergenic |
| AACAAATTAATGCTCAGAAT+TGG | 0.398318 | tig0025986:+52145 | Msa1426370:exon |
| CGCAAGGCAATGCTTAAACT+TGG | 0.418058 | tig0025986:+51649 | Msa1426370:CDS |
| CTGACACCTACATTATATTC+GGG | 0.423367 | tig0025986:+51868 | Msa1426370:CDS |
| TTAATTTGTTAGCTCCATAA+TGG | 0.425574 | tig0025986:-52132 | None:intergenic |
| CACCACCAACTCAATATCCT+TGG | 0.437037 | tig0025986:-52039 | None:intergenic |
| TCCGCTGTCATTCTCGGCAT+TGG | 0.437139 | tig0025986:-52351 | None:intergenic |
| AGCAGCAAGAAGCTCTTCTT+GGG | 0.446621 | tig0025986:-50243 | None:intergenic |
| GTTCTTTATCACTCTTAGGT+TGG | 0.450180 | tig0025986:+52457 | Msa1426370:three_prime_UTR |
| TTCTGGTTTCGCACCCGCAT+TGG | 0.470492 | tig0025986:-51964 | None:intergenic |
| TCAGGCTGCAGAGCAGTTCA+AGG | 0.470685 | tig0025986:+51929 | Msa1426370:CDS |
| TATAGAACACAGCAAAGGTC+TGG | 0.483527 | tig0025986:-52391 | None:intergenic |
| TCCCAAGGATATTGAGTTGG+TGG | 0.515624 | tig0025986:+52037 | Msa1426370:CDS |
| GCTCCTAATTTGACCAATGC+GGG | 0.519514 | tig0025986:+51951 | Msa1426370:CDS |
| ATAATGTAGGTGTCAGAAGT+TGG | 0.520697 | tig0025986:-51861 | None:intergenic |
| TCATCGTCATCCTCAACTAC+AGG | 0.523575 | tig0025986:-50869 | None:intergenic |
| ACCACCAACTCAATATCCTT+GGG | 0.531886 | tig0025986:-52038 | None:intergenic |
| GATGAGGATGTAGACGAGAC+TGG | 0.538671 | tig0025986:+52008 | Msa1426370:CDS |
| GGATTTGAAGGTGATGCATC+TGG | 0.544074 | tig0025986:+51592 | Msa1426370:intron |
| GGCAGCAACAATGTCTCCAT+TGG | 0.548006 | tig0025986:-52111 | None:intergenic |
| GAGTTGGTGGTGACTCAAGC+TGG | 0.556994 | tig0025986:+52050 | Msa1426370:CDS |
| AAGACATAGCCACGCAATGA+AGG | 0.561527 | tig0025986:-52417 | None:intergenic |
| GGTGCGAAACCAGAATCCTC+TGG | 0.566739 | tig0025986:+51972 | Msa1426370:CDS |
| TGACGAAGACGACGATGATG+AGG | 0.584480 | tig0025986:+50907 | Msa1426370:CDS |
| GCATGATGAGCCTGTAGTTG+AGG | 0.588135 | tig0025986:+50859 | Msa1426370:intron |
| AAAGCTCTCAAAGCTGCCAA+TGG | 0.592851 | tig0025986:+52095 | Msa1426370:CDS |
| GAGCTCACAGCTACAAACTC+AGG | 0.597975 | tig0025986:+51911 | Msa1426370:CDS |
| CGAGACTGGTGTAGATCCCA+AGG | 0.607645 | tig0025986:+52022 | Msa1426370:CDS |
| TGGTATTGCTCCAGAAGATG+AGG | 0.607813 | tig0025986:+51992 | Msa1426370:CDS |
| AGCTTCCCCGAATATAATGT+AGG | 0.614771 | tig0025986:-51874 | None:intergenic |
| TCTATATTACCTTCATTGCG+TGG | 0.615723 | tig0025986:+52408 | Msa1426370:three_prime_UTR |
| AGATCCCAAGGATATTGAGT+TGG | 0.629225 | tig0025986:+52034 | Msa1426370:CDS |
| TTGAAGGTGATGCATCTGGT+AGG | 0.643359 | tig0025986:+51596 | Msa1426370:CDS |
| GGCTCCTAATTTGACCAATG+CGG | 0.643666 | tig0025986:+51950 | Msa1426370:CDS |
| AAGTGAAAAGAAGAGTCGCA+AGG | 0.645070 | tig0025986:+51633 | Msa1426370:CDS |
| GGTAATATAGAACACAGCAA+AGG | 0.652612 | tig0025986:-52396 | None:intergenic |
| TCCAATGCCGAGAATGACAG+CGG | 0.654611 | tig0025986:+52350 | Msa1426370:three_prime_UTR |
| ATCTTCTGGAGCAATACCAG+AGG | 0.670950 | tig0025986:-51988 | None:intergenic |
| CAGAAAATAGAACAAAGCAA+AGG | 0.671441 | tig0025986:-52266 | None:intergenic |
| TGACACCTACATTATATTCG+GGG | 0.682224 | tig0025986:+51869 | Msa1426370:CDS |
| TGACGATGATGAGGACGATG+AGG | 0.719627 | tig0025986:+50883 | Msa1426370:CDS |
| AGTTGAGGATGACGATGATG+AGG | 0.722265 | tig0025986:+50874 | Msa1426370:CDS |
| GAGGACGATGACAATGCTGA+AGG | 0.723088 | tig0025986:+50926 | Msa1426370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAAATAATAAAT+TGG | - | tig0025986:50318-50337 | None:intergenic | 0.0% |
| !! | AAAAAAATAAAATAATAAAT+TGG | - | tig0025986:50318-50337 | None:intergenic | 0.0% |
| !! | AAAATAAAATAATAAATTGG+AGG | - | tig0025986:50315-50334 | None:intergenic | 10.0% |
| !! | AAAATAAAATAATAAATTGG+AGG | - | tig0025986:50315-50334 | None:intergenic | 10.0% |
| !!! | TATTTTTTTAGTTCAGTTTT+TGG | + | tig0025986:50329-50348 | Msa1426370:intron | 15.0% |
| !!! | TTTATGTATGAAATGTTTTA+GGG | + | tig0025986:50410-50429 | Msa1426370:intron | 15.0% |
| !! | ATGTTACAATGAAAAAAAAA+TGG | + | tig0025986:50591-50610 | Msa1426370:intron | 15.0% |
| !!! | TATTTTTTTAGTTCAGTTTT+TGG | + | tig0025986:50329-50348 | Msa1426370:intron | 15.0% |
| !!! | TTTATGTATGAAATGTTTTA+GGG | + | tig0025986:50410-50429 | Msa1426370:intron | 15.0% |
| !! | ATGTTACAATGAAAAAAAAA+TGG | + | tig0025986:50591-50610 | Msa1426370:intron | 15.0% |
| !!! | AAAAAGAGAAGTTGATTTTT+GGG | - | tig0025986:50200-50219 | None:intergenic | 20.0% |
| !!! | TGGTTTAGTTTTTGATTTTT+TGG | + | tig0025986:50379-50398 | Msa1426370:intron | 20.0% |
| !!! | CTTTATGTATGAAATGTTTT+AGG | + | tig0025986:50409-50428 | Msa1426370:intron | 20.0% |
| !!! | ATTTACATGTTTTTGAAATC+TGG | + | tig0025986:50503-50522 | Msa1426370:intron | 20.0% |
| !!! | TTTACATGTTTTTGAAATCT+GGG | + | tig0025986:50504-50523 | Msa1426370:intron | 20.0% |
| !! | TTATTCATAAAATCATGACA+TGG | - | tig0025986:50547-50566 | None:intergenic | 20.0% |
| !! | TTCTTGTAGTAAATTGTAAT+TGG | + | tig0025986:50681-50700 | Msa1426370:intron | 20.0% |
| !! | TTGTTCTACAAAATTTCAAA+TGG | + | tig0025986:51104-51123 | Msa1426370:intron | 20.0% |
| !! | TGTTCTACAAAATTTCAAAT+GGG | + | tig0025986:51105-51124 | Msa1426370:intron | 20.0% |
| !! | TTCATTTAAAAGTTCATCAT+TGG | + | tig0025986:51194-51213 | Msa1426370:intron | 20.0% |
| !!! | TTTTTTTCTTTTTCTATTGC+AGG | + | tig0025986:51571-51590 | Msa1426370:intron | 20.0% |
| !!! | TTTTTCTGTTGTATCAATAT+TGG | + | tig0025986:51757-51776 | Msa1426370:intron | 20.0% |
| !!! | AAAAAGAGAAGTTGATTTTT+GGG | - | tig0025986:50200-50219 | None:intergenic | 20.0% |
| !!! | TGGTTTAGTTTTTGATTTTT+TGG | + | tig0025986:50379-50398 | Msa1426370:intron | 20.0% |
| !!! | CTTTATGTATGAAATGTTTT+AGG | + | tig0025986:50409-50428 | Msa1426370:intron | 20.0% |
| !!! | ATTTACATGTTTTTGAAATC+TGG | + | tig0025986:50503-50522 | Msa1426370:intron | 20.0% |
| !!! | TTTACATGTTTTTGAAATCT+GGG | + | tig0025986:50504-50523 | Msa1426370:intron | 20.0% |
| !! | TTATTCATAAAATCATGACA+TGG | - | tig0025986:50547-50566 | None:intergenic | 20.0% |
| !! | TTCTTGTAGTAAATTGTAAT+TGG | + | tig0025986:50681-50700 | Msa1426370:intron | 20.0% |
| !! | TTGTTCTACAAAATTTCAAA+TGG | + | tig0025986:51104-51123 | Msa1426370:intron | 20.0% |
| !! | TGTTCTACAAAATTTCAAAT+GGG | + | tig0025986:51105-51124 | Msa1426370:intron | 20.0% |
| !! | TTCATTTAAAAGTTCATCAT+TGG | + | tig0025986:51194-51213 | Msa1426370:intron | 20.0% |
| !!! | TTTTTTTCTTTTTCTATTGC+AGG | + | tig0025986:51571-51590 | Msa1426370:intron | 20.0% |
| !!! | TTTTTCTGTTGTATCAATAT+TGG | + | tig0025986:51757-51776 | Msa1426370:intron | 20.0% |
| !!! | AAAAGAGAAGTTGATTTTTG+GGG | - | tig0025986:50199-50218 | None:intergenic | 25.0% |
| !!! | GAAAAAGAGAAGTTGATTTT+TGG | - | tig0025986:50201-50220 | None:intergenic | 25.0% |
| !! | TAGTTTGATTTCCAAGTAAT+TGG | + | tig0025986:50359-50378 | Msa1426370:intron | 25.0% |
| ! | CAAAAACTAAACCAATTACT+TGG | - | tig0025986:50373-50392 | None:intergenic | 25.0% |
| ! | TACTGTGTATGAAATGATTT+AGG | + | tig0025986:50442-50461 | Msa1426370:intron | 25.0% |
| ! | ACTGTGTATGAAATGATTTA+GGG | + | tig0025986:50443-50462 | Msa1426370:intron | 25.0% |
| !! | TACAGATGAATTTGTTCTTA+TGG | + | tig0025986:50736-50755 | Msa1426370:intron | 25.0% |
| ! | TTGTAAACTTATAAGTGTAG+TGG | + | tig0025986:50773-50792 | Msa1426370:intron | 25.0% |
| ! | ATAGCATTCATTGAGTAATT+TGG | + | tig0025986:51022-51041 | Msa1426370:intron | 25.0% |
| ! | CAACAAAGTGAATTAATGTA+CGG | + | tig0025986:51057-51076 | Msa1426370:intron | 25.0% |
| ! | TTTGTATTTAGTGTATGTTG+AGG | + | tig0025986:51334-51353 | Msa1426370:intron | 25.0% |
| ! | TTGTATTTAGTGTATGTTGA+GGG | + | tig0025986:51335-51354 | Msa1426370:intron | 25.0% |
| !!! | TTGTTTTTTTGCATGAACTA+AGG | + | tig0025986:51525-51544 | Msa1426370:intron | 25.0% |
| !!! | TTAATTTGTTAGCTCCATAA+TGG | - | tig0025986:52135-52154 | None:intergenic | 25.0% |
| ! | AACAAATTAATGCTCAGAAT+TGG | + | tig0025986:52145-52164 | Msa1426370:exon | 25.0% |
| !!! | ATTGGTAGTACTTTAGATTT+TGG | + | tig0025986:52163-52182 | Msa1426370:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTTGTTGCTCTTGT+TGG | + | tig0025986:52215-52234 | Msa1426370:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTGTTGCTCTTGTT+GGG | + | tig0025986:52216-52235 | Msa1426370:three_prime_UTR | 25.0% |
| ! | AATTGTTCTTTATCACTCTT+AGG | + | tig0025986:52453-52472 | Msa1426370:three_prime_UTR | 25.0% |
| !!! | AAAAGAGAAGTTGATTTTTG+GGG | - | tig0025986:50199-50218 | None:intergenic | 25.0% |
| !!! | GAAAAAGAGAAGTTGATTTT+TGG | - | tig0025986:50201-50220 | None:intergenic | 25.0% |
| !! | TAGTTTGATTTCCAAGTAAT+TGG | + | tig0025986:50359-50378 | Msa1426370:intron | 25.0% |
| ! | CAAAAACTAAACCAATTACT+TGG | - | tig0025986:50373-50392 | None:intergenic | 25.0% |
| ! | TACTGTGTATGAAATGATTT+AGG | + | tig0025986:50442-50461 | Msa1426370:intron | 25.0% |
| ! | ACTGTGTATGAAATGATTTA+GGG | + | tig0025986:50443-50462 | Msa1426370:intron | 25.0% |
| !! | TACAGATGAATTTGTTCTTA+TGG | + | tig0025986:50736-50755 | Msa1426370:intron | 25.0% |
| ! | TTGTAAACTTATAAGTGTAG+TGG | + | tig0025986:50773-50792 | Msa1426370:intron | 25.0% |
| ! | ATAGCATTCATTGAGTAATT+TGG | + | tig0025986:51022-51041 | Msa1426370:intron | 25.0% |
| ! | CAACAAAGTGAATTAATGTA+CGG | + | tig0025986:51057-51076 | Msa1426370:intron | 25.0% |
| ! | TTTGTATTTAGTGTATGTTG+AGG | + | tig0025986:51334-51353 | Msa1426370:intron | 25.0% |
| ! | TTGTATTTAGTGTATGTTGA+GGG | + | tig0025986:51335-51354 | Msa1426370:intron | 25.0% |
| !!! | TTGTTTTTTTGCATGAACTA+AGG | + | tig0025986:51525-51544 | Msa1426370:intron | 25.0% |
| !!! | TTAATTTGTTAGCTCCATAA+TGG | - | tig0025986:52135-52154 | None:intergenic | 25.0% |
| ! | AACAAATTAATGCTCAGAAT+TGG | + | tig0025986:52145-52164 | Msa1426370:exon | 25.0% |
| !!! | ATTGGTAGTACTTTAGATTT+TGG | + | tig0025986:52163-52182 | Msa1426370:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTTGTTGCTCTTGT+TGG | + | tig0025986:52215-52234 | Msa1426370:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTGTTGCTCTTGTT+GGG | + | tig0025986:52216-52235 | Msa1426370:three_prime_UTR | 25.0% |
| ! | AATTGTTCTTTATCACTCTT+AGG | + | tig0025986:52453-52472 | Msa1426370:three_prime_UTR | 25.0% |
| !!! | GTTTTTGAAATCTGGGTTTT+TGG | + | tig0025986:50511-50530 | Msa1426370:intron | 30.0% |
| ATGTATCTGTGTATCTATAG+AGG | + | tig0025986:50645-50664 | Msa1426370:intron | 30.0% | |
| CATTCATTGAGTAATTTGGT+AGG | + | tig0025986:51026-51045 | Msa1426370:intron | 30.0% | |
| TTGAGGGTTTAACAAAATCA+CGG | + | tig0025986:51351-51370 | Msa1426370:intron | 30.0% | |
| ACTGTCATAAATATTGTGTG+TGG | + | tig0025986:51409-51428 | Msa1426370:intron | 30.0% | |
| !!! | CATGTATTTTGGTTGTATTC+TGG | - | tig0025986:51460-51479 | None:intergenic | 30.0% |
| ! | CTGACATTGTACATGTATTT+TGG | - | tig0025986:51471-51490 | None:intergenic | 30.0% |
| CAAAATACATGTACAATGTC+AGG | + | tig0025986:51469-51488 | Msa1426370:intron | 30.0% | |
| ! | TTTTCTATTGCAGGATTTGA+AGG | + | tig0025986:51580-51599 | Msa1426370:intron | 30.0% |
| TCTGACACCTACATTATATT+CGG | + | tig0025986:51867-51886 | Msa1426370:CDS | 30.0% | |
| CAGAAAATAGAACAAAGCAA+AGG | - | tig0025986:52269-52288 | None:intergenic | 30.0% | |
| ! | AAACCTGTTTTCAAATCCTT+TGG | + | tig0025986:52505-52524 | Msa1426370:three_prime_UTR | 30.0% |
| !!! | GTTTTTGAAATCTGGGTTTT+TGG | + | tig0025986:50511-50530 | Msa1426370:intron | 30.0% |
| ATGTATCTGTGTATCTATAG+AGG | + | tig0025986:50645-50664 | Msa1426370:intron | 30.0% | |
| CATTCATTGAGTAATTTGGT+AGG | + | tig0025986:51026-51045 | Msa1426370:intron | 30.0% | |
| TTGAGGGTTTAACAAAATCA+CGG | + | tig0025986:51351-51370 | Msa1426370:intron | 30.0% | |
| ACTGTCATAAATATTGTGTG+TGG | + | tig0025986:51409-51428 | Msa1426370:intron | 30.0% | |
| !!! | CATGTATTTTGGTTGTATTC+TGG | - | tig0025986:51460-51479 | None:intergenic | 30.0% |
| ! | CTGACATTGTACATGTATTT+TGG | - | tig0025986:51471-51490 | None:intergenic | 30.0% |
| CAAAATACATGTACAATGTC+AGG | + | tig0025986:51469-51488 | Msa1426370:intron | 30.0% | |
| ! | TTTTCTATTGCAGGATTTGA+AGG | + | tig0025986:51580-51599 | Msa1426370:intron | 30.0% |
| TCTGACACCTACATTATATT+CGG | + | tig0025986:51867-51886 | Msa1426370:CDS | 30.0% | |
| CAGAAAATAGAACAAAGCAA+AGG | - | tig0025986:52269-52288 | None:intergenic | 30.0% | |
| ! | AAACCTGTTTTCAAATCCTT+TGG | + | tig0025986:52505-52524 | Msa1426370:three_prime_UTR | 30.0% |
| ! | TGTTGTTTGTGTGTTGTGTT+TGG | + | tig0025986:50160-50179 | Msa1426370:five_prime_UTR | 35.0% |
| ! | AACTTGCCTCATTTTGCATT+TGG | + | tig0025986:50986-51005 | Msa1426370:intron | 35.0% |
| TGAGGGTTTAACAAAATCAC+GGG | + | tig0025986:51352-51371 | Msa1426370:intron | 35.0% | |
| TATTCTGGTACAGACTAATC+TGG | - | tig0025986:51445-51464 | None:intergenic | 35.0% | |
| ATGAACTAAGGCTACAATGA+TGG | + | tig0025986:51537-51556 | Msa1426370:intron | 35.0% | |
| ATAATGTAGGTGTCAGAAGT+TGG | - | tig0025986:51864-51883 | None:intergenic | 35.0% | |
| CTGACACCTACATTATATTC+GGG | + | tig0025986:51868-51887 | Msa1426370:CDS | 35.0% | |
| TGACACCTACATTATATTCG+GGG | + | tig0025986:51869-51888 | Msa1426370:CDS | 35.0% | |
| !!! | GTGAAGCTATTTTTCTTTGC+TGG | + | tig0025986:52189-52208 | Msa1426370:three_prime_UTR | 35.0% |
| ! | TCTTGTTGGGTTTGAAATAG+TGG | + | tig0025986:52229-52248 | Msa1426370:three_prime_UTR | 35.0% |
| GGTAATATAGAACACAGCAA+AGG | - | tig0025986:52399-52418 | None:intergenic | 35.0% | |
| TCTATATTACCTTCATTGCG+TGG | + | tig0025986:52408-52427 | Msa1426370:three_prime_UTR | 35.0% | |
| GTTCTTTATCACTCTTAGGT+TGG | + | tig0025986:52457-52476 | Msa1426370:three_prime_UTR | 35.0% | |
| TCAAATCCTTTGGCGAAAAA+AGG | + | tig0025986:52515-52534 | Msa1426370:three_prime_UTR | 35.0% | |
| ! | TGTTGTTTGTGTGTTGTGTT+TGG | + | tig0025986:50160-50179 | Msa1426370:five_prime_UTR | 35.0% |
| ! | AACTTGCCTCATTTTGCATT+TGG | + | tig0025986:50986-51005 | Msa1426370:intron | 35.0% |
| TGAGGGTTTAACAAAATCAC+GGG | + | tig0025986:51352-51371 | Msa1426370:intron | 35.0% | |
| TATTCTGGTACAGACTAATC+TGG | - | tig0025986:51445-51464 | None:intergenic | 35.0% | |
| ATGAACTAAGGCTACAATGA+TGG | + | tig0025986:51537-51556 | Msa1426370:intron | 35.0% | |
| ATAATGTAGGTGTCAGAAGT+TGG | - | tig0025986:51864-51883 | None:intergenic | 35.0% | |
| CTGACACCTACATTATATTC+GGG | + | tig0025986:51868-51887 | Msa1426370:CDS | 35.0% | |
| TGACACCTACATTATATTCG+GGG | + | tig0025986:51869-51888 | Msa1426370:CDS | 35.0% | |
| !!! | GTGAAGCTATTTTTCTTTGC+TGG | + | tig0025986:52189-52208 | Msa1426370:three_prime_UTR | 35.0% |
| ! | TCTTGTTGGGTTTGAAATAG+TGG | + | tig0025986:52229-52248 | Msa1426370:three_prime_UTR | 35.0% |
| GGTAATATAGAACACAGCAA+AGG | - | tig0025986:52399-52418 | None:intergenic | 35.0% | |
| TCTATATTACCTTCATTGCG+TGG | + | tig0025986:52408-52427 | Msa1426370:three_prime_UTR | 35.0% | |
| GTTCTTTATCACTCTTAGGT+TGG | + | tig0025986:52457-52476 | Msa1426370:three_prime_UTR | 35.0% | |
| TCAAATCCTTTGGCGAAAAA+AGG | + | tig0025986:52515-52534 | Msa1426370:three_prime_UTR | 35.0% | |
| !! | AGAAGTTGATTTTTGGGGAG+CGG | - | tig0025986:50194-50213 | None:intergenic | 40.0% |
| AAGAAGCTCTTCTTGGGTTT+GGG | - | tig0025986:50240-50259 | None:intergenic | 40.0% | |
| CCTTCACCAAATGCAAAATG+AGG | - | tig0025986:50995-51014 | None:intergenic | 40.0% | |
| !! | CCTCATTTTGCATTTGGTGA+AGG | + | tig0025986:50992-51011 | Msa1426370:intron | 40.0% |
| TCAAATGGGTGTTTCATCTG+AGG | + | tig0025986:51119-51138 | Msa1426370:intron | 40.0% | |
| TTGAAAGTCATGCAGAACAG+TGG | - | tig0025986:51497-51516 | None:intergenic | 40.0% | |
| ! | CTTTTCACTTCTGGTCTGTT+TGG | - | tig0025986:51623-51642 | None:intergenic | 40.0% |
| AAGTGAAAAGAAGAGTCGCA+AGG | + | tig0025986:51633-51652 | Msa1426370:CDS | 40.0% | |
| CTTGGAATGAAAGCTGTTAC+TGG | + | tig0025986:51667-51686 | Msa1426370:CDS | 40.0% | |
| ACGAACAAGATCTGATGAAC+AGG | - | tig0025986:51813-51832 | None:intergenic | 40.0% | |
| GTTGGACTCTTGAAAACATC+TGG | - | tig0025986:51846-51865 | None:intergenic | 40.0% | |
| AGCTTCCCCGAATATAATGT+AGG | - | tig0025986:51877-51896 | None:intergenic | 40.0% | |
| AGATCCCAAGGATATTGAGT+TGG | + | tig0025986:52034-52053 | Msa1426370:CDS | 40.0% | |
| ACCACCAACTCAATATCCTT+GGG | - | tig0025986:52041-52060 | None:intergenic | 40.0% | |
| GCTTTAACAGCTCTTGATCT+TGG | - | tig0025986:52080-52099 | None:intergenic | 40.0% | |
| AGACATTGTTGCTGCCATTA+TGG | + | tig0025986:52118-52137 | Msa1426370:CDS | 40.0% | |
| TATAGAACACAGCAAAGGTC+TGG | - | tig0025986:52394-52413 | None:intergenic | 40.0% | |
| TCGCCAAAGGATTTGAAAAC+AGG | - | tig0025986:52511-52530 | None:intergenic | 40.0% | |
| !! | AGAAGTTGATTTTTGGGGAG+CGG | - | tig0025986:50194-50213 | None:intergenic | 40.0% |
| AAGAAGCTCTTCTTGGGTTT+GGG | - | tig0025986:50240-50259 | None:intergenic | 40.0% | |
| CCTTCACCAAATGCAAAATG+AGG | - | tig0025986:50995-51014 | None:intergenic | 40.0% | |
| !! | CCTCATTTTGCATTTGGTGA+AGG | + | tig0025986:50992-51011 | Msa1426370:intron | 40.0% |
| TCAAATGGGTGTTTCATCTG+AGG | + | tig0025986:51119-51138 | Msa1426370:intron | 40.0% | |
| TTGAAAGTCATGCAGAACAG+TGG | - | tig0025986:51497-51516 | None:intergenic | 40.0% | |
| ! | CTTTTCACTTCTGGTCTGTT+TGG | - | tig0025986:51623-51642 | None:intergenic | 40.0% |
| AAGTGAAAAGAAGAGTCGCA+AGG | + | tig0025986:51633-51652 | Msa1426370:CDS | 40.0% | |
| CTTGGAATGAAAGCTGTTAC+TGG | + | tig0025986:51667-51686 | Msa1426370:CDS | 40.0% | |
| ACGAACAAGATCTGATGAAC+AGG | - | tig0025986:51813-51832 | None:intergenic | 40.0% | |
| GTTGGACTCTTGAAAACATC+TGG | - | tig0025986:51846-51865 | None:intergenic | 40.0% | |
| AGCTTCCCCGAATATAATGT+AGG | - | tig0025986:51877-51896 | None:intergenic | 40.0% | |
| AGATCCCAAGGATATTGAGT+TGG | + | tig0025986:52034-52053 | Msa1426370:CDS | 40.0% | |
| ACCACCAACTCAATATCCTT+GGG | - | tig0025986:52041-52060 | None:intergenic | 40.0% | |
| GCTTTAACAGCTCTTGATCT+TGG | - | tig0025986:52080-52099 | None:intergenic | 40.0% | |
| AGACATTGTTGCTGCCATTA+TGG | + | tig0025986:52118-52137 | Msa1426370:CDS | 40.0% | |
| TATAGAACACAGCAAAGGTC+TGG | - | tig0025986:52394-52413 | None:intergenic | 40.0% | |
| TCGCCAAAGGATTTGAAAAC+AGG | - | tig0025986:52511-52530 | None:intergenic | 40.0% | |
| CAAGAAGCTCTTCTTGGGTT+TGG | - | tig0025986:50241-50260 | None:intergenic | 45.0% | |
| AGCAGCAAGAAGCTCTTCTT+GGG | - | tig0025986:50246-50265 | None:intergenic | 45.0% | |
| TCATCGTCATCCTCAACTAC+AGG | - | tig0025986:50872-50891 | None:intergenic | 45.0% | |
| AGTTGAGGATGACGATGATG+AGG | + | tig0025986:50874-50893 | Msa1426370:CDS | 45.0% | |
| AAACCCACTGCGACAAATTG+TGG | + | tig0025986:51385-51404 | Msa1426370:intron | 45.0% | |
| GTACCACAATTTGTCGCAGT+GGG | - | tig0025986:51391-51410 | None:intergenic | 45.0% | |
| AGTACCACAATTTGTCGCAG+TGG | - | tig0025986:51392-51411 | None:intergenic | 45.0% | |
| GGATTTGAAGGTGATGCATC+TGG | + | tig0025986:51592-51611 | Msa1426370:intron | 45.0% | |
| TTGAAGGTGATGCATCTGGT+AGG | + | tig0025986:51596-51615 | Msa1426370:CDS | 45.0% | |
| ! | GCGACTCTTCTTTTCACTTC+TGG | - | tig0025986:51632-51651 | None:intergenic | 45.0% |
| CGCAAGGCAATGCTTAAACT+TGG | + | tig0025986:51649-51668 | Msa1426370:CDS | 45.0% | |
| GGCTCCTAATTTGACCAATG+CGG | + | tig0025986:51950-51969 | Msa1426370:CDS | 45.0% | |
| GCTCCTAATTTGACCAATGC+GGG | + | tig0025986:51951-51970 | Msa1426370:CDS | 45.0% | |
| !! | ATCTTCTGGAGCAATACCAG+AGG | - | tig0025986:51991-52010 | None:intergenic | 45.0% |
| TGGTATTGCTCCAGAAGATG+AGG | + | tig0025986:51992-52011 | Msa1426370:CDS | 45.0% | |
| TCGTCTACATCCTCATCTTC+TGG | - | tig0025986:52005-52024 | None:intergenic | 45.0% | |
| !! | TCCCAAGGATATTGAGTTGG+TGG | + | tig0025986:52037-52056 | Msa1426370:CDS | 45.0% |
| CACCACCAACTCAATATCCT+TGG | - | tig0025986:52042-52061 | None:intergenic | 45.0% | |
| AAAGCTCTCAAAGCTGCCAA+TGG | + | tig0025986:52095-52114 | Msa1426370:CDS | 45.0% | |
| CTATGATCCGCTGTCATTCT+CGG | - | tig0025986:52360-52379 | None:intergenic | 45.0% | |
| AAGACATAGCCACGCAATGA+AGG | - | tig0025986:52420-52439 | None:intergenic | 45.0% | |
| !!! | GCTACACCTTTTTTCGCCAA+AGG | - | tig0025986:52524-52543 | None:intergenic | 45.0% |
| CAAGAAGCTCTTCTTGGGTT+TGG | - | tig0025986:50241-50260 | None:intergenic | 45.0% | |
| AGCAGCAAGAAGCTCTTCTT+GGG | - | tig0025986:50246-50265 | None:intergenic | 45.0% | |
| TCATCGTCATCCTCAACTAC+AGG | - | tig0025986:50872-50891 | None:intergenic | 45.0% | |
| AGTTGAGGATGACGATGATG+AGG | + | tig0025986:50874-50893 | Msa1426370:CDS | 45.0% | |
| AAACCCACTGCGACAAATTG+TGG | + | tig0025986:51385-51404 | Msa1426370:intron | 45.0% | |
| GTACCACAATTTGTCGCAGT+GGG | - | tig0025986:51391-51410 | None:intergenic | 45.0% | |
| AGTACCACAATTTGTCGCAG+TGG | - | tig0025986:51392-51411 | None:intergenic | 45.0% | |
| GGATTTGAAGGTGATGCATC+TGG | + | tig0025986:51592-51611 | Msa1426370:intron | 45.0% | |
| TTGAAGGTGATGCATCTGGT+AGG | + | tig0025986:51596-51615 | Msa1426370:CDS | 45.0% | |
| ! | GCGACTCTTCTTTTCACTTC+TGG | - | tig0025986:51632-51651 | None:intergenic | 45.0% |
| CGCAAGGCAATGCTTAAACT+TGG | + | tig0025986:51649-51668 | Msa1426370:CDS | 45.0% | |
| GGCTCCTAATTTGACCAATG+CGG | + | tig0025986:51950-51969 | Msa1426370:CDS | 45.0% | |
| GCTCCTAATTTGACCAATGC+GGG | + | tig0025986:51951-51970 | Msa1426370:CDS | 45.0% | |
| !! | ATCTTCTGGAGCAATACCAG+AGG | - | tig0025986:51991-52010 | None:intergenic | 45.0% |
| TGGTATTGCTCCAGAAGATG+AGG | + | tig0025986:51992-52011 | Msa1426370:CDS | 45.0% | |
| TCGTCTACATCCTCATCTTC+TGG | - | tig0025986:52005-52024 | None:intergenic | 45.0% | |
| !! | TCCCAAGGATATTGAGTTGG+TGG | + | tig0025986:52037-52056 | Msa1426370:CDS | 45.0% |
| CACCACCAACTCAATATCCT+TGG | - | tig0025986:52042-52061 | None:intergenic | 45.0% | |
| AAAGCTCTCAAAGCTGCCAA+TGG | + | tig0025986:52095-52114 | Msa1426370:CDS | 45.0% | |
| CTATGATCCGCTGTCATTCT+CGG | - | tig0025986:52360-52379 | None:intergenic | 45.0% | |
| AAGACATAGCCACGCAATGA+AGG | - | tig0025986:52420-52439 | None:intergenic | 45.0% | |
| !!! | GCTACACCTTTTTTCGCCAA+AGG | - | tig0025986:52524-52543 | None:intergenic | 45.0% |
| !!! | TTTAATTAAGAATTTTTTTA+AGG | + | tig0025986:52480-52499 | Msa1426370:three_prime_UTR | 5.0% |
| !!! | TTTAATTAAGAATTTTTTTA+AGG | + | tig0025986:52480-52499 | Msa1426370:three_prime_UTR | 5.0% |
| TTCTTGGGTTTGGGCAGTCA+TGG | - | tig0025986:50231-50250 | None:intergenic | 50.0% | |
| GAGCAGCAAGAAGCTCTTCT+TGG | - | tig0025986:50247-50266 | None:intergenic | 50.0% | |
| GCATGATGAGCCTGTAGTTG+AGG | + | tig0025986:50859-50878 | Msa1426370:intron | 50.0% | |
| TGACGATGATGAGGACGATG+AGG | + | tig0025986:50883-50902 | Msa1426370:CDS | 50.0% | |
| TGACGAAGACGACGATGATG+AGG | + | tig0025986:50907-50926 | Msa1426370:CDS | 50.0% | |
| GAGGACGATGACAATGCTGA+AGG | + | tig0025986:50926-50945 | Msa1426370:CDS | 50.0% | |
| GAGCTCACAGCTACAAACTC+AGG | + | tig0025986:51911-51930 | Msa1426370:CDS | 50.0% | |
| ! | GCACCCGCATTGGTCAAATT+AGG | - | tig0025986:51957-51976 | None:intergenic | 50.0% |
| GGAGCAATACCAGAGGATTC+TGG | - | tig0025986:51984-52003 | None:intergenic | 50.0% | |
| GATGAGGATGTAGACGAGAC+TGG | + | tig0025986:52008-52027 | Msa1426370:CDS | 50.0% | |
| GGCAGCAACAATGTCTCCAT+TGG | - | tig0025986:52114-52133 | None:intergenic | 50.0% | |
| TCCAATGCCGAGAATGACAG+CGG | + | tig0025986:52350-52369 | Msa1426370:three_prime_UTR | 50.0% | |
| TTCTTGGGTTTGGGCAGTCA+TGG | - | tig0025986:50231-50250 | None:intergenic | 50.0% | |
| GAGCAGCAAGAAGCTCTTCT+TGG | - | tig0025986:50247-50266 | None:intergenic | 50.0% | |
| GCATGATGAGCCTGTAGTTG+AGG | + | tig0025986:50859-50878 | Msa1426370:intron | 50.0% | |
| TGACGATGATGAGGACGATG+AGG | + | tig0025986:50883-50902 | Msa1426370:CDS | 50.0% | |
| TGACGAAGACGACGATGATG+AGG | + | tig0025986:50907-50926 | Msa1426370:CDS | 50.0% | |
| GAGGACGATGACAATGCTGA+AGG | + | tig0025986:50926-50945 | Msa1426370:CDS | 50.0% | |
| GAGCTCACAGCTACAAACTC+AGG | + | tig0025986:51911-51930 | Msa1426370:CDS | 50.0% | |
| ! | GCACCCGCATTGGTCAAATT+AGG | - | tig0025986:51957-51976 | None:intergenic | 50.0% |
| GGAGCAATACCAGAGGATTC+TGG | - | tig0025986:51984-52003 | None:intergenic | 50.0% | |
| GATGAGGATGTAGACGAGAC+TGG | + | tig0025986:52008-52027 | Msa1426370:CDS | 50.0% | |
| GGCAGCAACAATGTCTCCAT+TGG | - | tig0025986:52114-52133 | None:intergenic | 50.0% | |
| TCCAATGCCGAGAATGACAG+CGG | + | tig0025986:52350-52369 | Msa1426370:three_prime_UTR | 50.0% | |
| TCAGGCTGCAGAGCAGTTCA+AGG | + | tig0025986:51929-51948 | Msa1426370:CDS | 55.0% | |
| !! | TTCTGGTTTCGCACCCGCAT+TGG | - | tig0025986:51967-51986 | None:intergenic | 55.0% |
| GGTGCGAAACCAGAATCCTC+TGG | + | tig0025986:51972-51991 | Msa1426370:CDS | 55.0% | |
| CGAGACTGGTGTAGATCCCA+AGG | + | tig0025986:52022-52041 | Msa1426370:CDS | 55.0% | |
| !! | GAGTTGGTGGTGACTCAAGC+TGG | + | tig0025986:52050-52069 | Msa1426370:CDS | 55.0% |
| TCCGCTGTCATTCTCGGCAT+TGG | - | tig0025986:52354-52373 | None:intergenic | 55.0% | |
| TCAGGCTGCAGAGCAGTTCA+AGG | + | tig0025986:51929-51948 | Msa1426370:CDS | 55.0% | |
| !! | TTCTGGTTTCGCACCCGCAT+TGG | - | tig0025986:51967-51986 | None:intergenic | 55.0% |
| GGTGCGAAACCAGAATCCTC+TGG | + | tig0025986:51972-51991 | Msa1426370:CDS | 55.0% | |
| CGAGACTGGTGTAGATCCCA+AGG | + | tig0025986:52022-52041 | Msa1426370:CDS | 55.0% | |
| !! | GAGTTGGTGGTGACTCAAGC+TGG | + | tig0025986:52050-52069 | Msa1426370:CDS | 55.0% |
| TCCGCTGTCATTCTCGGCAT+TGG | - | tig0025986:52354-52373 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025986 | gene | 50154 | 52567 | 50154 | ID=Msa1426370;Name=Msa1426370 |
| tig0025986 | mRNA | 50154 | 52567 | 50154 | ID=Msa1426370-mRNA-1;Parent=Msa1426370;Name=Msa1426370-mRNA-1;_AED=0.43;_eAED=0.43;_QI=76|1|1|1|1|1|4|413|203 |
| tig0025986 | exon | 50154 | 50289 | 50154 | ID=Msa1426370-mRNA-1:exon:4880;Parent=Msa1426370-mRNA-1 |
| tig0025986 | exon | 50860 | 50947 | 50860 | ID=Msa1426370-mRNA-1:exon:4881;Parent=Msa1426370-mRNA-1 |
| tig0025986 | exon | 51593 | 51723 | 51593 | ID=Msa1426370-mRNA-1:exon:4882;Parent=Msa1426370-mRNA-1 |
| tig0025986 | exon | 51822 | 52567 | 51822 | ID=Msa1426370-mRNA-1:exon:4883;Parent=Msa1426370-mRNA-1 |
| tig0025986 | five_prime_UTR | 50154 | 50229 | 50154 | ID=Msa1426370-mRNA-1:five_prime_utr;Parent=Msa1426370-mRNA-1 |
| tig0025986 | CDS | 50230 | 50289 | 50230 | ID=Msa1426370-mRNA-1:cds;Parent=Msa1426370-mRNA-1 |
| tig0025986 | CDS | 50860 | 50947 | 50860 | ID=Msa1426370-mRNA-1:cds;Parent=Msa1426370-mRNA-1 |
| tig0025986 | CDS | 51593 | 51723 | 51593 | ID=Msa1426370-mRNA-1:cds;Parent=Msa1426370-mRNA-1 |
| tig0025986 | CDS | 51822 | 52154 | 51822 | ID=Msa1426370-mRNA-1:cds;Parent=Msa1426370-mRNA-1 |
| tig0025986 | three_prime_UTR | 52155 | 52567 | 52155 | ID=Msa1426370-mRNA-1:three_prime_utr;Parent=Msa1426370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
