Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121130 | A0A371GS31 | 57.143 | 189 | 28 | 1 | 2 | 137 | 573 | 761 | 4.11e-62 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032430 | Msa0121130 | 0.801770 | 7.698704e-49 | -8.615850e-47 |
| Msa0121130 | Msa0124060 | 0.803257 | 3.799676e-49 | -8.615850e-47 |
| Msa0121130 | Msa0334550 | 0.805842 | 1.098042e-49 | -8.615850e-47 |
| Msa0121130 | Msa0709400 | 0.819623 | 1.053787e-52 | -8.615850e-47 |
| Msa0121130 | Msa0806790 | 0.810741 | 9.911380e-51 | -8.615850e-47 |
| Msa0121130 | Msa0847770 | 0.837882 | 3.998033e-57 | -8.615850e-47 |
| Msa0121130 | Msa0945970 | 0.800218 | 1.597761e-48 | -8.615850e-47 |
| Msa0121130 | Msa1002650 | 0.822860 | 1.889664e-53 | -8.615850e-47 |
| Msa0121130 | Msa1124960 | 0.815206 | 1.040940e-51 | -8.615850e-47 |
| Msa0121130 | Msa1225700 | 0.807134 | 5.861975e-50 | -8.615850e-47 |
| Msa0121130 | Msa1385770 | 0.810021 | 1.417811e-50 | -8.615850e-47 |
| Msa0121130 | Msa1409240 | 0.810269 | 1.253556e-50 | -8.615850e-47 |
| Msa0121130 | Msa1434140 | 0.803600 | 3.226098e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121130 | MtrunA17_Chr1g0179841 | 100.000 | 81 | 0 | 0 | 57 | 137 | 732 | 812 | 2.48e-51 | 173 |
| Msa0121130 | MtrunA17_Chr1g0179841 | 90.323 | 62 | 6 | 0 | 1 | 62 | 604 | 665 | 5.30e-30 | 113 |
| Msa0121130 | MtrunA17_Chr7g0265211 | 67.500 | 80 | 26 | 0 | 57 | 136 | 877 | 956 | 1.96e-34 | 126 |
| Msa0121130 | MtrunA17_Chr7g0265211 | 61.538 | 65 | 25 | 0 | 2 | 66 | 750 | 814 | 3.40e-21 | 88.2 |
| Msa0121130 | MtrunA17_Chr2g0320451 | 50.000 | 94 | 43 | 3 | 38 | 128 | 932 | 1024 | 6.04e-22 | 90.5 |
| Msa0121130 | MtrunA17_Chr4g0027811 | 34.074 | 135 | 49 | 2 | 28 | 122 | 440 | 574 | 5.87e-19 | 81.6 |
| Msa0121130 | MtrunA17_Chr1g0182481 | 56.338 | 71 | 30 | 1 | 57 | 127 | 824 | 893 | 1.89e-17 | 77.4 |
| Msa0121130 | MtrunA17_Chr4g0025251 | 53.623 | 69 | 32 | 0 | 57 | 125 | 631 | 699 | 3.25e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121130 | AT2G27980.1 | 59.722 | 72 | 28 | 1 | 57 | 128 | 988 | 1058 | 2.60e-23 | 94.7 |
| Msa0121130 | AT2G36720.1 | 55.844 | 77 | 34 | 0 | 57 | 133 | 903 | 979 | 3.10e-22 | 91.7 |
| Msa0121130 | AT2G36720.1 | 43.590 | 78 | 37 | 1 | 2 | 79 | 776 | 846 | 2.76e-13 | 65.9 |
| Msa0121130 | AT2G36720.2 | 55.844 | 77 | 34 | 0 | 57 | 133 | 903 | 979 | 3.10e-22 | 91.7 |
| Msa0121130 | AT2G36720.2 | 43.590 | 78 | 37 | 1 | 2 | 79 | 776 | 846 | 2.76e-13 | 65.9 |
| Msa0121130 | AT2G37520.1 | 55.556 | 81 | 35 | 1 | 57 | 137 | 746 | 825 | 3.32e-22 | 91.7 |
| Msa0121130 | AT3G53680.2 | 56.944 | 72 | 30 | 1 | 57 | 128 | 764 | 834 | 3.57e-20 | 85.9 |
| Msa0121130 | AT3G53680.1 | 56.944 | 72 | 30 | 1 | 57 | 128 | 762 | 832 | 3.64e-20 | 85.9 |
Find 43 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATATGGAAATATAAATT+TGG | 0.125727 | 1_3:+46587667 | Msa0121130:CDS |
| ATCTTATATCAATCTCATTA+AGG | 0.198987 | 1_3:-46586353 | None:intergenic |
| TGAAACCAGGCCGTTGCTTT+TGG | 0.223567 | 1_3:+46586407 | Msa0121130:CDS |
| ATAACATCCAAAAGAGATTC+AGG | 0.231457 | 1_3:-46586297 | None:intergenic |
| AAAAGCAACGGCCTGGTTTC+AGG | 0.258105 | 1_3:-46586405 | None:intergenic |
| GAAACTCCCTGAATCTCTTT+TGG | 0.272070 | 1_3:+46586290 | Msa0121130:CDS |
| AAAGCAAGAGGATAGATATT+TGG | 0.304580 | 1_3:+46586326 | Msa0121130:CDS |
| CCCAAATTTATATTTCCATA+TGG | 0.331457 | 1_3:-46587668 | None:intergenic |
| CCATATGGAAATATAAATTT+GGG | 0.335557 | 1_3:+46587668 | Msa0121130:CDS |
| AATGAGAAATCTGTATAAAA+AGG | 0.360274 | 1_3:+46588013 | Msa0121130:three_prime_UTR |
| TCTTATATCAATCTCATTAA+GGG | 0.370075 | 1_3:-46586352 | None:intergenic |
| AAAGAACTGCCAACAGTTGA+TGG | 0.385458 | 1_3:+46587920 | Msa0121130:CDS |
| AATATAAATTTGGGTTTAGC+AGG | 0.388453 | 1_3:+46587677 | Msa0121130:CDS |
| ATAAGATGGAGACTTGTTAA+TGG | 0.396793 | 1_3:+46586369 | Msa0121130:CDS |
| CAATGCACGAGAACAGTGTT+TGG | 0.401405 | 1_3:-46587582 | None:intergenic |
| TTGGCAGTTCTTTCTAAAGT+TGG | 0.421301 | 1_3:-46587910 | None:intergenic |
| AACTTACGTTGAATATTGAC+AGG | 0.442245 | 1_3:-46586434 | None:intergenic |
| GACAGTTATGCTTCACAAAT+CGG | 0.444606 | 1_3:+46587953 | Msa0121130:CDS |
| AAGAAAATATATACCTGCTC+AGG | 0.459137 | 1_3:-46587706 | None:intergenic |
| TATGACACTTATCAATGTAC+AGG | 0.473176 | 1_3:-46588180 | None:intergenic |
| CTGAAGAAGCAGAATCCATA+TGG | 0.474283 | 1_3:+46587653 | Msa0121130:CDS |
| AAAAGAATAAGATAAAGCTC+AGG | 0.488976 | 1_3:-46588055 | None:intergenic |
| GATTCTGCTTCTTCAGCAGC+TGG | 0.489139 | 1_3:-46587646 | None:intergenic |
| TTAATGAGATTGATATAAGA+TGG | 0.490803 | 1_3:+46586355 | Msa0121130:CDS |
| TGTCATGATAGCTTCACAAA+TGG | 0.502139 | 1_3:-46588106 | None:intergenic |
| GTTCTCGTGCATTGAAAGGC+TGG | 0.506479 | 1_3:+46587591 | Msa0121130:CDS |
| CACTGTTCTCGTGCATTGAA+AGG | 0.509849 | 1_3:+46587587 | Msa0121130:CDS |
| GGCCTCCAAAAGCAACGGCC+TGG | 0.519244 | 1_3:-46586412 | None:intergenic |
| AACAGTTGATGGCATTCAAA+GGG | 0.524220 | 1_3:+46587931 | Msa0121130:CDS |
| TAACATCCAAAAGAGATTCA+GGG | 0.524976 | 1_3:-46586296 | None:intergenic |
| CAACAGTTGATGGCATTCAA+AGG | 0.527248 | 1_3:+46587930 | Msa0121130:CDS |
| ACAAATCGGTGCCTCGATGT+CGG | 0.531461 | 1_3:+46587967 | Msa0121130:CDS |
| CTTTGAATGCCATCAACTGT+TGG | 0.549216 | 1_3:-46587929 | None:intergenic |
| TAGCAGGACGAAACCTGAGC+AGG | 0.567038 | 1_3:+46587693 | Msa0121130:CDS |
| CTTCAGCAGCTGGTAACACA+AGG | 0.572407 | 1_3:-46587636 | None:intergenic |
| AAGGTTCTTCACATTCAAGA+AGG | 0.575726 | 1_3:-46587617 | None:intergenic |
| CTTATATCAATCTCATTAAG+GGG | 0.577053 | 1_3:-46586351 | None:intergenic |
| AAGTTGCTTCTCCTGAAACC+AGG | 0.585700 | 1_3:+46586394 | Msa0121130:CDS |
| AAAGAATAAGATAAAGCTCA+GGG | 0.596731 | 1_3:-46588054 | None:intergenic |
| GACAGGGCCTCCAAAAGCAA+CGG | 0.618009 | 1_3:-46586417 | None:intergenic |
| CTCGTGCATTGAAAGGCTGG+TGG | 0.635327 | 1_3:+46587594 | Msa0121130:CDS |
| ACTTACGTTGAATATTGACA+GGG | 0.701623 | 1_3:-46586433 | None:intergenic |
| CTATGAATGATCCGACATCG+AGG | 0.764887 | 1_3:-46587978 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAAATAAATACAATTT+AGG | + | chr1_3:46586661-46586680 | Msa0121130:intron | 10.0% |
| !!! | ATTATTTATTACATTTTCTT+CGG | + | chr1_3:46587825-46587844 | Msa0121130:intron | 10.0% |
| !! | AAAGTAAATAAATACAATTT+AGG | + | chr1_3:46586661-46586680 | Msa0121130:intron | 10.0% |
| !!! | ATTATTTATTACATTTTCTT+CGG | + | chr1_3:46587825-46587844 | Msa0121130:intron | 10.0% |
| !!! | TATTATAACTAATGGATTAA+TGG | + | chr1_3:46586814-46586833 | Msa0121130:intron | 15.0% |
| !!! | ATTATAACTAATGGATTAAT+GGG | + | chr1_3:46586815-46586834 | Msa0121130:intron | 15.0% |
| !!! | AAATACCAAAATTTTAAGAA+GGG | - | chr1_3:46587151-46587170 | None:intergenic | 15.0% |
| !!! | AAAATACCAAAATTTTAAGA+AGG | - | chr1_3:46587152-46587171 | None:intergenic | 15.0% |
| !! | TTAAGTTACAAAAAATTAAG+TGG | - | chr1_3:46587369-46587388 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTAACTTAATTTC+TGG | + | chr1_3:46587373-46587392 | Msa0121130:intron | 15.0% |
| !!! | TTTTTTGTAACTTAATTTCT+GGG | + | chr1_3:46587374-46587393 | Msa0121130:intron | 15.0% |
| !!! | ATCATAATTTTATTTGCTTT+TGG | + | chr1_3:46587413-46587432 | Msa0121130:intron | 15.0% |
| !!! | TTATTTATTACATTTTCTTC+GGG | + | chr1_3:46587826-46587845 | Msa0121130:intron | 15.0% |
| !!! | TATTATAACTAATGGATTAA+TGG | + | chr1_3:46586814-46586833 | Msa0121130:intron | 15.0% |
| !!! | ATTATAACTAATGGATTAAT+GGG | + | chr1_3:46586815-46586834 | Msa0121130:intron | 15.0% |
| !!! | AAATACCAAAATTTTAAGAA+GGG | - | chr1_3:46587151-46587170 | None:intergenic | 15.0% |
| !!! | AAAATACCAAAATTTTAAGA+AGG | - | chr1_3:46587152-46587171 | None:intergenic | 15.0% |
| !! | TTAAGTTACAAAAAATTAAG+TGG | - | chr1_3:46587369-46587388 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTAACTTAATTTC+TGG | + | chr1_3:46587373-46587392 | Msa0121130:intron | 15.0% |
| !!! | TTTTTTGTAACTTAATTTCT+GGG | + | chr1_3:46587374-46587393 | Msa0121130:intron | 15.0% |
| !!! | ATCATAATTTTATTTGCTTT+TGG | + | chr1_3:46587413-46587432 | Msa0121130:intron | 15.0% |
| !!! | TTATTTATTACATTTTCTTC+GGG | + | chr1_3:46587826-46587845 | Msa0121130:intron | 15.0% |
| !! | TCTTATATCAATCTCATTAA+GGG | - | chr1_3:46586355-46586374 | None:intergenic | 20.0% |
| !! | ATCTTATATCAATCTCATTA+AGG | - | chr1_3:46586356-46586375 | None:intergenic | 20.0% |
| !! | TTAATGAGATTGATATAAGA+TGG | + | chr1_3:46586355-46586374 | Msa0121130:CDS | 20.0% |
| !! | GAAAATGAAGAAGAAATATA+AGG | - | chr1_3:46586468-46586487 | None:intergenic | 20.0% |
| !!! | CATATTTCAAGTTATGAATA+AGG | + | chr1_3:46586766-46586785 | Msa0121130:intron | 20.0% |
| !! | ATATAGGCTATTATAACTAA+TGG | + | chr1_3:46586806-46586825 | Msa0121130:intron | 20.0% |
| !!! | AATTTTGGTATTTTTTTCGA+TGG | + | chr1_3:46587158-46587177 | Msa0121130:intron | 20.0% |
| !!! | ATTTTGGTATTTTTTTCGAT+GGG | + | chr1_3:46587159-46587178 | Msa0121130:intron | 20.0% |
| !! | TATTTAATACTTCACAAAGT+GGG | + | chr1_3:46587280-46587299 | Msa0121130:intron | 20.0% |
| !! | TCCATATGGAAATATAAATT+TGG | + | chr1_3:46587667-46587686 | Msa0121130:CDS | 20.0% |
| !! | CCATATGGAAATATAAATTT+GGG | + | chr1_3:46587668-46587687 | Msa0121130:CDS | 20.0% |
| !!! | CATTTTGTTTTACATTTCTA+TGG | + | chr1_3:46587782-46587801 | Msa0121130:intron | 20.0% |
| !! | AATGAGAAATCTGTATAAAA+AGG | + | chr1_3:46588013-46588032 | Msa0121130:three_prime_UTR | 20.0% |
| !! | TCTTATATCAATCTCATTAA+GGG | - | chr1_3:46586355-46586374 | None:intergenic | 20.0% |
| !! | ATCTTATATCAATCTCATTA+AGG | - | chr1_3:46586356-46586375 | None:intergenic | 20.0% |
| !! | TTAATGAGATTGATATAAGA+TGG | + | chr1_3:46586355-46586374 | Msa0121130:CDS | 20.0% |
| !! | GAAAATGAAGAAGAAATATA+AGG | - | chr1_3:46586468-46586487 | None:intergenic | 20.0% |
| !!! | CATATTTCAAGTTATGAATA+AGG | + | chr1_3:46586766-46586785 | Msa0121130:intron | 20.0% |
| !! | ATATAGGCTATTATAACTAA+TGG | + | chr1_3:46586806-46586825 | Msa0121130:intron | 20.0% |
| !!! | AATTTTGGTATTTTTTTCGA+TGG | + | chr1_3:46587158-46587177 | Msa0121130:intron | 20.0% |
| !!! | ATTTTGGTATTTTTTTCGAT+GGG | + | chr1_3:46587159-46587178 | Msa0121130:intron | 20.0% |
| !! | TATTTAATACTTCACAAAGT+GGG | + | chr1_3:46587280-46587299 | Msa0121130:intron | 20.0% |
| !! | TCCATATGGAAATATAAATT+TGG | + | chr1_3:46587667-46587686 | Msa0121130:CDS | 20.0% |
| !! | CCATATGGAAATATAAATTT+GGG | + | chr1_3:46587668-46587687 | Msa0121130:CDS | 20.0% |
| !!! | CATTTTGTTTTACATTTCTA+TGG | + | chr1_3:46587782-46587801 | Msa0121130:intron | 20.0% |
| !! | AATGAGAAATCTGTATAAAA+AGG | + | chr1_3:46588013-46588032 | Msa0121130:three_prime_UTR | 20.0% |
| ! | TGTTATAAAGAAAAAGCAAG+AGG | + | chr1_3:46586314-46586333 | Msa0121130:CDS | 25.0% |
| ! | CTTATATCAATCTCATTAAG+GGG | - | chr1_3:46586354-46586373 | None:intergenic | 25.0% |
| ! | TCATGATCATAACTTTATGT+AGG | + | chr1_3:46586486-46586505 | Msa0121130:intron | 25.0% |
| ! | CATGATCATAACTTTATGTA+GGG | + | chr1_3:46586487-46586506 | Msa0121130:intron | 25.0% |
| !!! | CTTGGTATTTTTGTTATTGT+TGG | + | chr1_3:46586560-46586579 | Msa0121130:intron | 25.0% |
| ! | AAAATAAATGCATGTTCACA+GGG | + | chr1_3:46586706-46586725 | Msa0121130:intron | 25.0% |
| ! | ACAAGTACTACTCTTTATAT+AGG | + | chr1_3:46586790-46586809 | Msa0121130:intron | 25.0% |
| !!! | AAAATTTTAAGAAGGGAAAG+TGG | - | chr1_3:46587144-46587163 | None:intergenic | 25.0% |
| !! | ACTTTCCCTTCTTAAAATTT+TGG | + | chr1_3:46587143-46587162 | Msa0121130:intron | 25.0% |
| !! | CTTTGTGAAGTATTAAATAG+TGG | - | chr1_3:46587279-46587298 | None:intergenic | 25.0% |
| ! | CTATTTAATACTTCACAAAG+TGG | + | chr1_3:46587279-46587298 | Msa0121130:intron | 25.0% |
| ! | AGCAAATAAAATTATGATGC+AGG | - | chr1_3:46587411-46587430 | None:intergenic | 25.0% |
| !!! | AAATTGCTGTTTTGATTAAC+TGG | + | chr1_3:46587463-46587482 | Msa0121130:intron | 25.0% |
| !!! | AATTGCTGTTTTGATTAACT+GGG | + | chr1_3:46587464-46587483 | Msa0121130:intron | 25.0% |
| ! | CCCAAATTTATATTTCCATA+TGG | - | chr1_3:46587671-46587690 | None:intergenic | 25.0% |
| !! | AATATAAATTTGGGTTTAGC+AGG | + | chr1_3:46587677-46587696 | Msa0121130:CDS | 25.0% |
| !! | TTCTTGACTACTTACATTTT+AGG | + | chr1_3:46587724-46587743 | Msa0121130:intron | 25.0% |
| ! | AACAAAATGCTAGAATAAAG+TGG | - | chr1_3:46587771-46587790 | None:intergenic | 25.0% |
| ! | TATAAAAAGGTCACTCAAAA+AGG | + | chr1_3:46588026-46588045 | Msa0121130:three_prime_UTR | 25.0% |
| ! | ATAAAAAGGTCACTCAAAAA+GGG | + | chr1_3:46588027-46588046 | Msa0121130:three_prime_UTR | 25.0% |
| ! | AAAGAATAAGATAAAGCTCA+GGG | - | chr1_3:46588057-46588076 | None:intergenic | 25.0% |
| ! | AAAAGAATAAGATAAAGCTC+AGG | - | chr1_3:46588058-46588077 | None:intergenic | 25.0% |
| !!! | AGCTTTATCTTATTCTTTTC+TGG | + | chr1_3:46588059-46588078 | Msa0121130:three_prime_UTR | 25.0% |
| ! | TGTTATAAAGAAAAAGCAAG+AGG | + | chr1_3:46586314-46586333 | Msa0121130:CDS | 25.0% |
| ! | CTTATATCAATCTCATTAAG+GGG | - | chr1_3:46586354-46586373 | None:intergenic | 25.0% |
| ! | TCATGATCATAACTTTATGT+AGG | + | chr1_3:46586486-46586505 | Msa0121130:intron | 25.0% |
| ! | CATGATCATAACTTTATGTA+GGG | + | chr1_3:46586487-46586506 | Msa0121130:intron | 25.0% |
| !!! | CTTGGTATTTTTGTTATTGT+TGG | + | chr1_3:46586560-46586579 | Msa0121130:intron | 25.0% |
| ! | AAAATAAATGCATGTTCACA+GGG | + | chr1_3:46586706-46586725 | Msa0121130:intron | 25.0% |
| ! | ACAAGTACTACTCTTTATAT+AGG | + | chr1_3:46586790-46586809 | Msa0121130:intron | 25.0% |
| !!! | AAAATTTTAAGAAGGGAAAG+TGG | - | chr1_3:46587144-46587163 | None:intergenic | 25.0% |
| !! | ACTTTCCCTTCTTAAAATTT+TGG | + | chr1_3:46587143-46587162 | Msa0121130:intron | 25.0% |
| !! | CTTTGTGAAGTATTAAATAG+TGG | - | chr1_3:46587279-46587298 | None:intergenic | 25.0% |
| ! | CTATTTAATACTTCACAAAG+TGG | + | chr1_3:46587279-46587298 | Msa0121130:intron | 25.0% |
| ! | AGCAAATAAAATTATGATGC+AGG | - | chr1_3:46587411-46587430 | None:intergenic | 25.0% |
| !!! | AAATTGCTGTTTTGATTAAC+TGG | + | chr1_3:46587463-46587482 | Msa0121130:intron | 25.0% |
| !!! | AATTGCTGTTTTGATTAACT+GGG | + | chr1_3:46587464-46587483 | Msa0121130:intron | 25.0% |
| ! | CCCAAATTTATATTTCCATA+TGG | - | chr1_3:46587671-46587690 | None:intergenic | 25.0% |
| !! | AATATAAATTTGGGTTTAGC+AGG | + | chr1_3:46587677-46587696 | Msa0121130:CDS | 25.0% |
| !! | TTCTTGACTACTTACATTTT+AGG | + | chr1_3:46587724-46587743 | Msa0121130:intron | 25.0% |
| ! | AACAAAATGCTAGAATAAAG+TGG | - | chr1_3:46587771-46587790 | None:intergenic | 25.0% |
| ! | TATAAAAAGGTCACTCAAAA+AGG | + | chr1_3:46588026-46588045 | Msa0121130:three_prime_UTR | 25.0% |
| ! | ATAAAAAGGTCACTCAAAAA+GGG | + | chr1_3:46588027-46588046 | Msa0121130:three_prime_UTR | 25.0% |
| ! | AAAGAATAAGATAAAGCTCA+GGG | - | chr1_3:46588057-46588076 | None:intergenic | 25.0% |
| ! | AAAAGAATAAGATAAAGCTC+AGG | - | chr1_3:46588058-46588077 | None:intergenic | 25.0% |
| !!! | AGCTTTATCTTATTCTTTTC+TGG | + | chr1_3:46588059-46588078 | Msa0121130:three_prime_UTR | 25.0% |
| TAACATCCAAAAGAGATTCA+GGG | - | chr1_3:46586299-46586318 | None:intergenic | 30.0% | |
| ATAACATCCAAAAGAGATTC+AGG | - | chr1_3:46586300-46586319 | None:intergenic | 30.0% | |
| AAAGCAAGAGGATAGATATT+TGG | + | chr1_3:46586326-46586345 | Msa0121130:CDS | 30.0% | |
| !! | ATAAGATGGAGACTTGTTAA+TGG | + | chr1_3:46586369-46586388 | Msa0121130:CDS | 30.0% |
| ACTTACGTTGAATATTGACA+GGG | - | chr1_3:46586436-46586455 | None:intergenic | 30.0% | |
| AACTTACGTTGAATATTGAC+AGG | - | chr1_3:46586437-46586456 | None:intergenic | 30.0% | |
| TGAAGAAGAAATATAAGGAC+AGG | - | chr1_3:46586463-46586482 | None:intergenic | 30.0% | |
| CAAAATAAATGCATGTTCAC+AGG | + | chr1_3:46586705-46586724 | Msa0121130:intron | 30.0% | |
| AATATCTATCATTCTCAGCT+TGG | + | chr1_3:46586918-46586937 | Msa0121130:intron | 30.0% | |
| AATCATTTCAAAGCTATTGC+TGG | + | chr1_3:46586945-46586964 | Msa0121130:intron | 30.0% | |
| TGTGTCTTGTAGCAATTAAT+GGG | - | chr1_3:46587036-46587055 | None:intergenic | 30.0% | |
| TTGTGTCTTGTAGCAATTAA+TGG | - | chr1_3:46587037-46587056 | None:intergenic | 30.0% | |
| ! | TTTTCGATGGGAATATAAAG+TGG | + | chr1_3:46587171-46587190 | Msa0121130:intron | 30.0% |
| AATATAAAGTGGTCATGGTA+AGG | + | chr1_3:46587182-46587201 | Msa0121130:intron | 30.0% | |
| ATAAAATTATGATGCAGGCA+AGG | - | chr1_3:46587406-46587425 | None:intergenic | 30.0% | |
| !!! | TTTGCTTTTGGTGATGTTTT+TGG | + | chr1_3:46587425-46587444 | Msa0121130:intron | 30.0% |
| TTGTTATAATTGACCTGAAC+AGG | + | chr1_3:46587552-46587571 | Msa0121130:intron | 30.0% | |
| TGTTATAATTGACCTGAACA+GGG | + | chr1_3:46587553-46587572 | Msa0121130:intron | 30.0% | |
| AAGAAAATATATACCTGCTC+AGG | - | chr1_3:46587709-46587728 | None:intergenic | 30.0% | |
| TAAAAAGGTCACTCAAAAAG+GGG | + | chr1_3:46588028-46588047 | Msa0121130:three_prime_UTR | 30.0% | |
| TATGACACTTATCAATGTAC+AGG | - | chr1_3:46588183-46588202 | None:intergenic | 30.0% | |
| TAACATCCAAAAGAGATTCA+GGG | - | chr1_3:46586299-46586318 | None:intergenic | 30.0% | |
| ATAACATCCAAAAGAGATTC+AGG | - | chr1_3:46586300-46586319 | None:intergenic | 30.0% | |
| AAAGCAAGAGGATAGATATT+TGG | + | chr1_3:46586326-46586345 | Msa0121130:CDS | 30.0% | |
| !! | ATAAGATGGAGACTTGTTAA+TGG | + | chr1_3:46586369-46586388 | Msa0121130:CDS | 30.0% |
| ACTTACGTTGAATATTGACA+GGG | - | chr1_3:46586436-46586455 | None:intergenic | 30.0% | |
| AACTTACGTTGAATATTGAC+AGG | - | chr1_3:46586437-46586456 | None:intergenic | 30.0% | |
| TGAAGAAGAAATATAAGGAC+AGG | - | chr1_3:46586463-46586482 | None:intergenic | 30.0% | |
| CAAAATAAATGCATGTTCAC+AGG | + | chr1_3:46586705-46586724 | Msa0121130:intron | 30.0% | |
| AATATCTATCATTCTCAGCT+TGG | + | chr1_3:46586918-46586937 | Msa0121130:intron | 30.0% | |
| AATCATTTCAAAGCTATTGC+TGG | + | chr1_3:46586945-46586964 | Msa0121130:intron | 30.0% | |
| TGTGTCTTGTAGCAATTAAT+GGG | - | chr1_3:46587036-46587055 | None:intergenic | 30.0% | |
| TTGTGTCTTGTAGCAATTAA+TGG | - | chr1_3:46587037-46587056 | None:intergenic | 30.0% | |
| ! | TTTTCGATGGGAATATAAAG+TGG | + | chr1_3:46587171-46587190 | Msa0121130:intron | 30.0% |
| AATATAAAGTGGTCATGGTA+AGG | + | chr1_3:46587182-46587201 | Msa0121130:intron | 30.0% | |
| ATAAAATTATGATGCAGGCA+AGG | - | chr1_3:46587406-46587425 | None:intergenic | 30.0% | |
| !!! | TTTGCTTTTGGTGATGTTTT+TGG | + | chr1_3:46587425-46587444 | Msa0121130:intron | 30.0% |
| TTGTTATAATTGACCTGAAC+AGG | + | chr1_3:46587552-46587571 | Msa0121130:intron | 30.0% | |
| TGTTATAATTGACCTGAACA+GGG | + | chr1_3:46587553-46587572 | Msa0121130:intron | 30.0% | |
| AAGAAAATATATACCTGCTC+AGG | - | chr1_3:46587709-46587728 | None:intergenic | 30.0% | |
| TAAAAAGGTCACTCAAAAAG+GGG | + | chr1_3:46588028-46588047 | Msa0121130:three_prime_UTR | 30.0% | |
| TATGACACTTATCAATGTAC+AGG | - | chr1_3:46588183-46588202 | None:intergenic | 30.0% | |
| AGAAGAAATATAAGGACAGG+CGG | - | chr1_3:46586460-46586479 | None:intergenic | 35.0% | |
| GATCATAACTTTATGTAGGG+TGG | + | chr1_3:46586490-46586509 | Msa0121130:intron | 35.0% | |
| !!! | CATTTTTTGAGGGACAAACA+AGG | - | chr1_3:46586531-46586550 | None:intergenic | 35.0% |
| CTTGTTTGTCCCTCAAAAAA+TGG | + | chr1_3:46586529-46586548 | Msa0121130:intron | 35.0% | |
| !!! | GCATCTCTACCATTTTTTGA+GGG | - | chr1_3:46586541-46586560 | None:intergenic | 35.0% |
| !!! | AGCATCTCTACCATTTTTTG+AGG | - | chr1_3:46586542-46586561 | None:intergenic | 35.0% |
| CAAAAAATGGTAGAGATGCT+TGG | + | chr1_3:46586542-46586561 | Msa0121130:intron | 35.0% | |
| !!! | AACTTGATTGGCCTTTTCAT+TGG | + | chr1_3:46587094-46587113 | Msa0121130:intron | 35.0% |
| !!! | ACTTGATTGGCCTTTTCATT+GGG | + | chr1_3:46587095-46587114 | Msa0121130:intron | 35.0% |
| CATATTGGTACCCAATGAAA+AGG | - | chr1_3:46587108-46587127 | None:intergenic | 35.0% | |
| TTTAAGAAGGGAAAGTGGTT+GGG | - | chr1_3:46587139-46587158 | None:intergenic | 35.0% | |
| !! | TTTTAAGAAGGGAAAGTGGT+TGG | - | chr1_3:46587140-46587159 | None:intergenic | 35.0% |
| ATGGGAATATAAAGTGGTCA+TGG | + | chr1_3:46587177-46587196 | Msa0121130:intron | 35.0% | |
| AAGGTTCTTCACATTCAAGA+AGG | - | chr1_3:46587620-46587639 | None:intergenic | 35.0% | |
| !! | CTACTTACATTTTAGGAGCT+AGG | + | chr1_3:46587731-46587750 | Msa0121130:intron | 35.0% |
| !! | TTGGCAGTTCTTTCTAAAGT+TGG | - | chr1_3:46587913-46587932 | None:intergenic | 35.0% |
| !! | AACAGTTGATGGCATTCAAA+GGG | + | chr1_3:46587931-46587950 | Msa0121130:CDS | 35.0% |
| GACAGTTATGCTTCACAAAT+CGG | + | chr1_3:46587953-46587972 | Msa0121130:CDS | 35.0% | |
| TGTCATGATAGCTTCACAAA+TGG | - | chr1_3:46588109-46588128 | None:intergenic | 35.0% | |
| AGAAGAAATATAAGGACAGG+CGG | - | chr1_3:46586460-46586479 | None:intergenic | 35.0% | |
| GATCATAACTTTATGTAGGG+TGG | + | chr1_3:46586490-46586509 | Msa0121130:intron | 35.0% | |
| !!! | CATTTTTTGAGGGACAAACA+AGG | - | chr1_3:46586531-46586550 | None:intergenic | 35.0% |
| CTTGTTTGTCCCTCAAAAAA+TGG | + | chr1_3:46586529-46586548 | Msa0121130:intron | 35.0% | |
| !!! | GCATCTCTACCATTTTTTGA+GGG | - | chr1_3:46586541-46586560 | None:intergenic | 35.0% |
| !!! | AGCATCTCTACCATTTTTTG+AGG | - | chr1_3:46586542-46586561 | None:intergenic | 35.0% |
| CAAAAAATGGTAGAGATGCT+TGG | + | chr1_3:46586542-46586561 | Msa0121130:intron | 35.0% | |
| !!! | AACTTGATTGGCCTTTTCAT+TGG | + | chr1_3:46587094-46587113 | Msa0121130:intron | 35.0% |
| !!! | ACTTGATTGGCCTTTTCATT+GGG | + | chr1_3:46587095-46587114 | Msa0121130:intron | 35.0% |
| CATATTGGTACCCAATGAAA+AGG | - | chr1_3:46587108-46587127 | None:intergenic | 35.0% | |
| TTTAAGAAGGGAAAGTGGTT+GGG | - | chr1_3:46587139-46587158 | None:intergenic | 35.0% | |
| !! | TTTTAAGAAGGGAAAGTGGT+TGG | - | chr1_3:46587140-46587159 | None:intergenic | 35.0% |
| ATGGGAATATAAAGTGGTCA+TGG | + | chr1_3:46587177-46587196 | Msa0121130:intron | 35.0% | |
| AAGGTTCTTCACATTCAAGA+AGG | - | chr1_3:46587620-46587639 | None:intergenic | 35.0% | |
| !! | CTACTTACATTTTAGGAGCT+AGG | + | chr1_3:46587731-46587750 | Msa0121130:intron | 35.0% |
| !! | TTGGCAGTTCTTTCTAAAGT+TGG | - | chr1_3:46587913-46587932 | None:intergenic | 35.0% |
| !! | AACAGTTGATGGCATTCAAA+GGG | + | chr1_3:46587931-46587950 | Msa0121130:CDS | 35.0% |
| GACAGTTATGCTTCACAAAT+CGG | + | chr1_3:46587953-46587972 | Msa0121130:CDS | 35.0% | |
| TGTCATGATAGCTTCACAAA+TGG | - | chr1_3:46588109-46588128 | None:intergenic | 35.0% | |
| ! | GAAACTCCCTGAATCTCTTT+TGG | + | chr1_3:46586290-46586309 | Msa0121130:CDS | 40.0% |
| GATATTCATTCACCAGCTTG+AGG | - | chr1_3:46586904-46586923 | None:intergenic | 40.0% | |
| GATACCACAGATGAACTTCA+AGG | - | chr1_3:46586971-46586990 | None:intergenic | 40.0% | |
| AAGTTCATCTGTGGTATCTG+CGG | + | chr1_3:46586973-46586992 | Msa0121130:intron | 40.0% | |
| GACTGTACTGCTAACTTGAT+TGG | + | chr1_3:46587082-46587101 | Msa0121130:intron | 40.0% | |
| TTAAGAAGGGAAAGTGGTTG+GGG | - | chr1_3:46587138-46587157 | None:intergenic | 40.0% | |
| !!! | TTGTTTTGACGAGTTCCCTT+AGG | + | chr1_3:46587303-46587322 | Msa0121130:intron | 40.0% |
| CTGAAGAAGCAGAATCCATA+TGG | + | chr1_3:46587653-46587672 | Msa0121130:CDS | 40.0% | |
| TTTAGCGTAGGGAATACGAA+TGG | - | chr1_3:46587859-46587878 | None:intergenic | 40.0% | |
| !! | TACTCGGTCATTTTAGCGTA+GGG | - | chr1_3:46587870-46587889 | None:intergenic | 40.0% |
| !! | ATACTCGGTCATTTTAGCGT+AGG | - | chr1_3:46587871-46587890 | None:intergenic | 40.0% |
| AAAGAACTGCCAACAGTTGA+TGG | + | chr1_3:46587920-46587939 | Msa0121130:CDS | 40.0% | |
| CTTTGAATGCCATCAACTGT+TGG | - | chr1_3:46587932-46587951 | None:intergenic | 40.0% | |
| !! | CAACAGTTGATGGCATTCAA+AGG | + | chr1_3:46587930-46587949 | Msa0121130:CDS | 40.0% |
| ! | GAAACTCCCTGAATCTCTTT+TGG | + | chr1_3:46586290-46586309 | Msa0121130:CDS | 40.0% |
| GATATTCATTCACCAGCTTG+AGG | - | chr1_3:46586904-46586923 | None:intergenic | 40.0% | |
| GATACCACAGATGAACTTCA+AGG | - | chr1_3:46586971-46586990 | None:intergenic | 40.0% | |
| AAGTTCATCTGTGGTATCTG+CGG | + | chr1_3:46586973-46586992 | Msa0121130:intron | 40.0% | |
| GACTGTACTGCTAACTTGAT+TGG | + | chr1_3:46587082-46587101 | Msa0121130:intron | 40.0% | |
| TTAAGAAGGGAAAGTGGTTG+GGG | - | chr1_3:46587138-46587157 | None:intergenic | 40.0% | |
| !!! | TTGTTTTGACGAGTTCCCTT+AGG | + | chr1_3:46587303-46587322 | Msa0121130:intron | 40.0% |
| CTGAAGAAGCAGAATCCATA+TGG | + | chr1_3:46587653-46587672 | Msa0121130:CDS | 40.0% | |
| TTTAGCGTAGGGAATACGAA+TGG | - | chr1_3:46587859-46587878 | None:intergenic | 40.0% | |
| !! | TACTCGGTCATTTTAGCGTA+GGG | - | chr1_3:46587870-46587889 | None:intergenic | 40.0% |
| !! | ATACTCGGTCATTTTAGCGT+AGG | - | chr1_3:46587871-46587890 | None:intergenic | 40.0% |
| AAAGAACTGCCAACAGTTGA+TGG | + | chr1_3:46587920-46587939 | Msa0121130:CDS | 40.0% | |
| CTTTGAATGCCATCAACTGT+TGG | - | chr1_3:46587932-46587951 | None:intergenic | 40.0% | |
| !! | CAACAGTTGATGGCATTCAA+AGG | + | chr1_3:46587930-46587949 | Msa0121130:CDS | 40.0% |
| AAGTTGCTTCTCCTGAAACC+AGG | + | chr1_3:46586394-46586413 | Msa0121130:CDS | 45.0% | |
| TACAACACTTCTCCTCAAGC+TGG | + | chr1_3:46586889-46586908 | Msa0121130:intron | 45.0% | |
| AGTTCATCTGTGGTATCTGC+GGG | + | chr1_3:46586974-46586993 | Msa0121130:intron | 45.0% | |
| AAGACACAAGAACCGTGGAA+AGG | + | chr1_3:46587048-46587067 | Msa0121130:intron | 45.0% | |
| AAGTTAGCAGTACAGTCCTC+AGG | - | chr1_3:46587079-46587098 | None:intergenic | 45.0% | |
| TAAGAAGGGAAAGTGGTTGG+GGG | - | chr1_3:46587137-46587156 | None:intergenic | 45.0% | |
| TAAAGTGGTCATGGTAAGGC+TGG | + | chr1_3:46587186-46587205 | Msa0121130:intron | 45.0% | |
| AAAGTGGTCATGGTAAGGCT+GGG | + | chr1_3:46587187-46587206 | Msa0121130:intron | 45.0% | |
| CATCGCTAAACACGTCCTAA+GGG | - | chr1_3:46587321-46587340 | None:intergenic | 45.0% | |
| TCATCGCTAAACACGTCCTA+AGG | - | chr1_3:46587322-46587341 | None:intergenic | 45.0% | |
| TGATCACTTATGCCTGTCTC+TGG | + | chr1_3:46587511-46587530 | Msa0121130:intron | 45.0% | |
| GATCACTTATGCCTGTCTCT+GGG | + | chr1_3:46587512-46587531 | Msa0121130:intron | 45.0% | |
| CAATGCACGAGAACAGTGTT+TGG | - | chr1_3:46587585-46587604 | None:intergenic | 45.0% | |
| CACTGTTCTCGTGCATTGAA+AGG | + | chr1_3:46587587-46587606 | Msa0121130:CDS | 45.0% | |
| CTATGAATGATCCGACATCG+AGG | - | chr1_3:46587981-46588000 | None:intergenic | 45.0% | |
| AAGTTGCTTCTCCTGAAACC+AGG | + | chr1_3:46586394-46586413 | Msa0121130:CDS | 45.0% | |
| TACAACACTTCTCCTCAAGC+TGG | + | chr1_3:46586889-46586908 | Msa0121130:intron | 45.0% | |
| AGTTCATCTGTGGTATCTGC+GGG | + | chr1_3:46586974-46586993 | Msa0121130:intron | 45.0% | |
| AAGACACAAGAACCGTGGAA+AGG | + | chr1_3:46587048-46587067 | Msa0121130:intron | 45.0% | |
| AAGTTAGCAGTACAGTCCTC+AGG | - | chr1_3:46587079-46587098 | None:intergenic | 45.0% | |
| TAAGAAGGGAAAGTGGTTGG+GGG | - | chr1_3:46587137-46587156 | None:intergenic | 45.0% | |
| TAAAGTGGTCATGGTAAGGC+TGG | + | chr1_3:46587186-46587205 | Msa0121130:intron | 45.0% | |
| AAAGTGGTCATGGTAAGGCT+GGG | + | chr1_3:46587187-46587206 | Msa0121130:intron | 45.0% | |
| CATCGCTAAACACGTCCTAA+GGG | - | chr1_3:46587321-46587340 | None:intergenic | 45.0% | |
| TCATCGCTAAACACGTCCTA+AGG | - | chr1_3:46587322-46587341 | None:intergenic | 45.0% | |
| TGATCACTTATGCCTGTCTC+TGG | + | chr1_3:46587511-46587530 | Msa0121130:intron | 45.0% | |
| GATCACTTATGCCTGTCTCT+GGG | + | chr1_3:46587512-46587531 | Msa0121130:intron | 45.0% | |
| CAATGCACGAGAACAGTGTT+TGG | - | chr1_3:46587585-46587604 | None:intergenic | 45.0% | |
| CACTGTTCTCGTGCATTGAA+AGG | + | chr1_3:46587587-46587606 | Msa0121130:CDS | 45.0% | |
| CTATGAATGATCCGACATCG+AGG | - | chr1_3:46587981-46588000 | None:intergenic | 45.0% | |
| AAAAGCAACGGCCTGGTTTC+AGG | - | chr1_3:46586408-46586427 | None:intergenic | 50.0% | |
| !! | TGAAACCAGGCCGTTGCTTT+TGG | + | chr1_3:46586407-46586426 | Msa0121130:CDS | 50.0% |
| !! | CTGGCCTTGAAGTTCATCTG+TGG | + | chr1_3:46586964-46586983 | Msa0121130:intron | 50.0% |
| GCTACAAGACACAAGAACCG+TGG | + | chr1_3:46587043-46587062 | Msa0121130:intron | 50.0% | |
| ACAAGAACCGTGGAAAGGTG+AGG | + | chr1_3:46587053-46587072 | Msa0121130:intron | 50.0% | |
| AAGTGGTCATGGTAAGGCTG+GGG | + | chr1_3:46587188-46587207 | Msa0121130:intron | 50.0% | |
| AGAGTTCACTACCCAGAGAC+AGG | - | chr1_3:46587526-46587545 | None:intergenic | 50.0% | |
| GTTTGGAAGTAGCCCTGTTC+AGG | - | chr1_3:46587568-46587587 | None:intergenic | 50.0% | |
| GTTCTCGTGCATTGAAAGGC+TGG | + | chr1_3:46587591-46587610 | Msa0121130:CDS | 50.0% | |
| CTTCAGCAGCTGGTAACACA+AGG | - | chr1_3:46587639-46587658 | None:intergenic | 50.0% | |
| GATTCTGCTTCTTCAGCAGC+TGG | - | chr1_3:46587649-46587668 | None:intergenic | 50.0% | |
| CTGCAGCACAACGGTATACT+CGG | - | chr1_3:46587886-46587905 | None:intergenic | 50.0% | |
| ! | GTTGGTAAGCTGCAGCACAA+CGG | - | chr1_3:46587895-46587914 | None:intergenic | 50.0% |
| ! | ACAAATCGGTGCCTCGATGT+CGG | + | chr1_3:46587967-46587986 | Msa0121130:CDS | 50.0% |
| AAAAGCAACGGCCTGGTTTC+AGG | - | chr1_3:46586408-46586427 | None:intergenic | 50.0% | |
| !! | TGAAACCAGGCCGTTGCTTT+TGG | + | chr1_3:46586407-46586426 | Msa0121130:CDS | 50.0% |
| !! | CTGGCCTTGAAGTTCATCTG+TGG | + | chr1_3:46586964-46586983 | Msa0121130:intron | 50.0% |
| GCTACAAGACACAAGAACCG+TGG | + | chr1_3:46587043-46587062 | Msa0121130:intron | 50.0% | |
| ACAAGAACCGTGGAAAGGTG+AGG | + | chr1_3:46587053-46587072 | Msa0121130:intron | 50.0% | |
| AAGTGGTCATGGTAAGGCTG+GGG | + | chr1_3:46587188-46587207 | Msa0121130:intron | 50.0% | |
| AGAGTTCACTACCCAGAGAC+AGG | - | chr1_3:46587526-46587545 | None:intergenic | 50.0% | |
| GTTTGGAAGTAGCCCTGTTC+AGG | - | chr1_3:46587568-46587587 | None:intergenic | 50.0% | |
| GTTCTCGTGCATTGAAAGGC+TGG | + | chr1_3:46587591-46587610 | Msa0121130:CDS | 50.0% | |
| CTTCAGCAGCTGGTAACACA+AGG | - | chr1_3:46587639-46587658 | None:intergenic | 50.0% | |
| GATTCTGCTTCTTCAGCAGC+TGG | - | chr1_3:46587649-46587668 | None:intergenic | 50.0% | |
| CTGCAGCACAACGGTATACT+CGG | - | chr1_3:46587886-46587905 | None:intergenic | 50.0% | |
| ! | GTTGGTAAGCTGCAGCACAA+CGG | - | chr1_3:46587895-46587914 | None:intergenic | 50.0% |
| ! | ACAAATCGGTGCCTCGATGT+CGG | + | chr1_3:46587967-46587986 | Msa0121130:CDS | 50.0% |
| !!! | AACCAGGCCGTTGCTTTTGG+AGG | + | chr1_3:46586410-46586429 | Msa0121130:CDS | 55.0% |
| GACAGGGCCTCCAAAAGCAA+CGG | - | chr1_3:46586420-46586439 | None:intergenic | 55.0% | |
| TGGTATCTGCGGGCATGCTA+CGG | + | chr1_3:46586984-46587003 | Msa0121130:intron | 55.0% | |
| ! | GCGGGCATGCTACGGATTTT+TGG | + | chr1_3:46586992-46587011 | Msa0121130:intron | 55.0% |
| GGTTGGGGGCAGTGACATAT+TGG | - | chr1_3:46587123-46587142 | None:intergenic | 55.0% | |
| CTCGTGCATTGAAAGGCTGG+TGG | + | chr1_3:46587594-46587613 | Msa0121130:CDS | 55.0% | |
| TAGCAGGACGAAACCTGAGC+AGG | + | chr1_3:46587693-46587712 | Msa0121130:CDS | 55.0% | |
| !!! | AACCAGGCCGTTGCTTTTGG+AGG | + | chr1_3:46586410-46586429 | Msa0121130:CDS | 55.0% |
| GACAGGGCCTCCAAAAGCAA+CGG | - | chr1_3:46586420-46586439 | None:intergenic | 55.0% | |
| TGGTATCTGCGGGCATGCTA+CGG | + | chr1_3:46586984-46587003 | Msa0121130:intron | 55.0% | |
| ! | GCGGGCATGCTACGGATTTT+TGG | + | chr1_3:46586992-46587011 | Msa0121130:intron | 55.0% |
| GGTTGGGGGCAGTGACATAT+TGG | - | chr1_3:46587123-46587142 | None:intergenic | 55.0% | |
| CTCGTGCATTGAAAGGCTGG+TGG | + | chr1_3:46587594-46587613 | Msa0121130:CDS | 55.0% | |
| TAGCAGGACGAAACCTGAGC+AGG | + | chr1_3:46587693-46587712 | Msa0121130:CDS | 55.0% | |
| CCTCAGGCCTCACCTTTCCA+CGG | - | chr1_3:46587063-46587082 | None:intergenic | 60.0% | |
| CCTCAGGCCTCACCTTTCCA+CGG | - | chr1_3:46587063-46587082 | None:intergenic | 60.0% | |
| GGCCTCCAAAAGCAACGGCC+TGG | - | chr1_3:46586415-46586434 | None:intergenic | 65.0% | |
| CCGTGGAAAGGTGAGGCCTG+AGG | + | chr1_3:46587060-46587079 | Msa0121130:intron | 65.0% | |
| GGCCTCCAAAAGCAACGGCC+TGG | - | chr1_3:46586415-46586434 | None:intergenic | 65.0% | |
| CCGTGGAAAGGTGAGGCCTG+AGG | + | chr1_3:46587060-46587079 | Msa0121130:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 46586282 | 46588225 | 46586282 | ID=Msa0121130;Name=Msa0121130 |
| chr1_3 | mRNA | 46586282 | 46588225 | 46586282 | ID=Msa0121130-mRNA-1;Parent=Msa0121130;Name=Msa0121130-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0.5|0.66|0.66|1|0.66|3|215|137 |
| chr1_3 | exon | 46586282 | 46586449 | 46586282 | ID=Msa0121130-mRNA-1:exon:14068;Parent=Msa0121130-mRNA-1 |
| chr1_3 | exon | 46587574 | 46587714 | 46587574 | ID=Msa0121130-mRNA-1:exon:14069;Parent=Msa0121130-mRNA-1 |
| chr1_3 | exon | 46587906 | 46588225 | 46587906 | ID=Msa0121130-mRNA-1:exon:14070;Parent=Msa0121130-mRNA-1 |
| chr1_3 | CDS | 46586282 | 46586449 | 46586282 | ID=Msa0121130-mRNA-1:cds;Parent=Msa0121130-mRNA-1 |
| chr1_3 | CDS | 46587574 | 46587714 | 46587574 | ID=Msa0121130-mRNA-1:cds;Parent=Msa0121130-mRNA-1 |
| chr1_3 | CDS | 46587906 | 46588010 | 46587906 | ID=Msa0121130-mRNA-1:cds;Parent=Msa0121130-mRNA-1 |
| chr1_3 | three_prime_UTR | 46588011 | 46588225 | 46588011 | ID=Msa0121130-mRNA-1:three_prime_utr;Parent=Msa0121130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
