AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1225700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1225700 MtrunA17_Chr4g0040341 98.383 371 6 0 1 371 1 371 0.0 744
Msa1225700 MtrunA17_Chr3g0088301 74.615 390 77 3 1 370 1 388 0.0 547
Msa1225700 MtrunA17_Chr8g0352031 74.866 374 80 5 1 370 1 364 0.0 521
Msa1225700 MtrunA17_Chr2g0328891 73.315 371 87 5 1 370 2 361 3.03e-179 501
Msa1225700 MtrunA17_Chr8g0393031 58.537 287 119 0 74 360 17 303 1.37e-128 371
Msa1225700 MtrunA17_Chr3g0135801 39.796 294 166 6 71 358 30 318 2.37e-68 218
Msa1225700 MtrunA17_Chr6g0488081 29.431 299 190 6 71 358 15 303 4.42e-34 128
Msa1225700 MtrunA17_Chr3g0135861 30.990 313 174 10 71 358 31 326 1.10e-30 119
Msa1225700 MtrunA17_Chr1g0149111 29.110 292 182 9 75 361 139 410 1.50e-29 118
Msa1225700 MtrunA17_Chr1g0149111 27.273 209 131 6 63 268 221 411 2.29e-14 73.9
Msa1225700 MtrunA17_Chr3g0137941 28.881 277 173 8 78 350 125 381 5.48e-28 113
Msa1225700 MtrunA17_Chr3g0137941 28.571 196 120 5 76 268 216 394 1.67e-15 77.4
Msa1225700 MtrunA17_Chr4g0006851 33.099 284 167 8 75 355 89 352 1.33e-27 112
Msa1225700 MtrunA17_Chr5g0396801 28.660 321 175 12 75 361 38 338 7.54e-27 109
Msa1225700 MtrunA17_Chr5g0396801 24.107 224 153 4 55 267 121 338 2.03e-11 64.7
Msa1225700 MtrunA17_Chr7g0242311 31.095 283 164 8 86 361 98 356 8.20e-27 109
Msa1225700 MtrunA17_Chr8g0347451 29.630 297 172 10 75 345 51 336 5.29e-26 107
Msa1225700 MtrunA17_Chr8g0347451 26.108 203 131 5 78 267 157 353 2.08e-12 67.8
Msa1225700 MtrunA17_Chr4g0063561 28.058 278 180 6 75 350 123 382 4.89e-25 105
Msa1225700 MtrunA17_Chr4g0063561 28.019 207 127 5 61 264 204 391 1.46e-16 80.5
Msa1225700 MtrunA17_Chr7g0240341 28.247 308 202 8 65 361 15 314 1.55e-24 102
Msa1225700 MtrunA17_Chr5g0436041 27.097 310 206 8 61 361 23 321 8.53e-23 97.8
Msa1225700 MtrunA17_Chr2g0296061 27.358 318 186 8 72 355 12 318 1.01e-22 97.4
Msa1225700 MtrunA17_Chr8g0385571 28.723 282 177 9 75 350 227 490 3.00e-22 98.2
Msa1225700 MtrunA17_Chr7g0252401 28.772 285 170 8 75 350 207 467 1.19e-21 96.3
Msa1225700 MtrunA17_Chr4g0067231 26.087 322 191 8 72 357 11 321 1.68e-21 94.0
Msa1225700 MtrunA17_Chr3g0131501 28.622 283 176 10 75 350 205 468 4.30e-20 91.7
Msa1225700 MtrunA17_Chr3g0115801 27.508 309 175 12 78 361 119 403 2.96e-18 85.5
Msa1225700 MtrunA17_Chr4g0000261 24.161 298 184 7 74 350 65 341 2.15e-17 82.8
Msa1225700 MtrunA17_Chr1g0196921 22.932 266 193 5 75 336 14 271 2.53e-15 75.9
Msa1225700 MtrunA17_Chr1g0196921 29.167 168 111 4 76 242 112 272 5.73e-14 72.0
Msa1225700 MtrunA17_Chr6g0488341 26.360 239 155 6 124 358 7 228 2.62e-15 74.7
Msa1225700 MtrunA17_Chr5g0411411 26.621 293 195 10 74 355 8 291 5.96e-15 74.7
Msa1225700 MtrunA17_Chr7g0241521 24.254 268 194 6 71 336 13 273 6.59e-15 74.7
Msa1225700 MtrunA17_Chr6g0463041 26.697 221 126 5 173 358 18 237 1.32e-14 72.8
Msa1225700 MtrunA17_Chr3g0133111 24.830 294 188 8 75 343 6 291 2.60e-14 73.2
Msa1225700 MtrunA17_Chr4g0008061 24.060 266 189 8 75 336 15 271 2.78e-13 69.7
Msa1225700 MtrunA17_Chr4g0004571 25.692 253 174 5 120 365 51 296 3.72e-13 69.3
Msa1225700 MtrunA17_Chr8g0382201 25.000 308 184 12 78 361 198 482 4.01e-13 70.5
Msa1225700 MtrunA17_Chr8g0366791 24.232 293 181 8 74 345 8 280 4.49e-13 69.3
Msa1225700 MtrunA17_Chr2g0331771 24.476 286 199 6 74 355 155 427 5.45e-13 69.7
Msa1225700 MtrunA17_Chr4g0028531 25.000 304 191 10 77 366 27 307 1.77e-12 67.4
Msa1225700 MtrunA17_Chr7g0269701 22.074 299 210 8 62 350 9 294 2.60e-12 67.0
Msa1225700 MtrunA17_Chr5g0412401 22.074 299 199 7 75 343 6 300 7.32e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1225700 AT4G28390.1 79.894 378 67 1 3 371 2 379 0.0 588
Msa1225700 AT4G28390.2 79.894 378 67 1 3 371 2 379 0.0 588
Msa1225700 AT5G13490.1 74.545 385 82 4 1 370 1 384 0.0 543
Msa1225700 AT5G13490.2 74.545 385 82 4 1 370 1 384 0.0 543
Msa1225700 AT3G08580.2 74.803 381 84 4 1 370 1 380 0.0 530
Msa1225700 AT3G08580.1 74.803 381 84 4 1 370 1 380 0.0 530
Msa1225700 AT5G17400.1 61.986 292 111 0 71 362 10 301 6.60e-133 382
Msa1225700 AT5G56450.1 38.614 303 167 7 71 361 30 325 4.74e-62 202
Msa1225700 AT4G26180.1 32.899 307 176 9 71 361 17 309 5.80e-33 125
Msa1225700 AT4G26180.2 33.218 289 164 8 71 344 17 291 9.88e-32 121
Msa1225700 AT2G37890.1 29.524 315 205 7 56 361 26 332 3.49e-31 121
Msa1225700 AT3G55640.1 28.475 295 194 7 74 359 37 323 7.10e-30 117
Msa1225700 AT3G55640.4 28.475 295 194 7 74 359 37 323 7.10e-30 117
Msa1225700 AT1G14560.1 29.537 281 172 6 86 350 38 308 1.57e-29 116
Msa1225700 AT3G51870.1 33.333 282 159 10 86 361 102 360 5.57e-29 116
Msa1225700 AT1G14560.2 29.818 275 167 6 86 344 38 302 9.39e-29 114
Msa1225700 AT5G01500.1 33.212 274 158 11 86 355 130 382 1.37e-27 112
Msa1225700 AT3G53940.1 29.545 308 196 9 65 361 63 360 1.70e-27 111
Msa1225700 AT4G32400.1 30.605 281 169 9 75 350 114 373 3.44e-27 111
Msa1225700 AT4G01100.1 27.812 320 175 11 78 361 45 344 4.07e-25 105
Msa1225700 AT4G01100.2 28.000 325 182 11 78 361 45 358 1.58e-23 100
Msa1225700 AT5G51050.1 29.643 280 174 7 75 350 223 483 1.65e-23 102
Msa1225700 AT4G01100.3 27.070 314 173 11 84 361 1 294 4.43e-23 98.2
Msa1225700 AT4G01100.3 25.854 205 129 6 78 267 98 294 6.26e-12 66.2
Msa1225700 AT5G61810.2 27.857 280 174 7 75 350 65 320 4.54e-22 96.3
Msa1225700 AT5G48970.1 27.358 318 189 8 72 355 19 328 6.55e-22 95.9
Msa1225700 AT3G21390.1 26.582 316 193 8 72 355 16 324 1.43e-21 94.7
Msa1225700 AT3G20240.1 24.746 295 186 6 74 350 51 327 1.80e-21 94.7
Msa1225700 AT3G21390.2 26.582 316 193 8 72 355 38 346 2.55e-21 94.4
Msa1225700 AT3G55640.2 28.205 195 128 3 74 264 37 223 4.43e-21 91.7
Msa1225700 AT3G55640.3 28.205 195 128 3 74 264 37 223 4.43e-21 91.7
Msa1225700 AT5G61810.1 27.857 280 174 7 75 350 208 463 5.30e-21 94.7
Msa1225700 AT5G07320.1 26.296 270 173 7 84 350 218 464 4.08e-19 89.0
Msa1225700 AT1G14560.3 30.851 188 113 4 179 350 24 210 5.70e-19 85.5
Msa1225700 AT3G53940.2 29.167 216 139 4 65 275 63 269 6.09e-19 86.7
Msa1225700 AT5G48970.2 26.562 256 153 6 127 355 10 257 9.91e-16 77.0
Msa1225700 AT5G64970.1 27.797 295 169 11 78 350 138 410 2.40e-15 77.4
Msa1225700 AT5G64970.2 27.119 295 171 11 78 350 14 286 1.08e-14 74.3
Msa1225700 AT3G54110.1 23.485 264 193 7 75 336 15 271 1.42e-14 73.9
Msa1225700 AT1G14140.1 24.820 278 192 7 65 336 8 274 1.74e-14 73.9
Msa1225700 AT5G64970.3 28.028 289 164 11 78 344 138 404 1.81e-14 74.7
Msa1225700 AT5G58970.1 24.460 278 195 6 71 343 12 279 2.74e-14 73.2
Msa1225700 AT1G78180.1 26.948 308 178 12 78 361 131 415 6.70e-13 70.1
Msa1225700 AT5G66380.1 27.805 205 124 6 173 365 5 197 2.16e-12 67.8
Msa1225700 AT4G27940.1 25.000 272 169 12 115 361 146 407 6.86e-11 63.9

Find 124 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTGATTTGGATAATTT+TGG 0.105411 8_1:+91155872 Msa1225700:three_prime_UTR
ACTCTTATTTGTCTATTCTT+TGG 0.187425 8_1:+91154812 Msa1225700:CDS
GAAATGAAAATCAGTATAAA+TGG 0.222492 8_1:-91152673 None:intergenic
TGAGCATTTCATCCTGGTTT+TGG 0.229183 8_1:-91154060 None:intergenic
GTTAGGTGGACATTCTTATT+TGG 0.250297 8_1:+91153802 Msa1225700:CDS
GACATTCTTATTTGGTTTCC+AGG 0.255723 8_1:+91153810 Msa1225700:CDS
GTCTTGTTTGGAAAGAAATA+TGG 0.260053 8_1:+91155792 Msa1225700:CDS
GGTGGTGAGAGGCAGTTTAA+TGG 0.306537 8_1:+91154882 Msa1225700:CDS
GCAGGTGCTGGTGTGCTTGC+TGG 0.309350 8_1:+91155750 Msa1225700:CDS
AATAGAAAGGCCCTAAATTC+TGG 0.309653 8_1:-91155919 None:intergenic
CTGTTTGTTCCATTGTGATT+TGG 0.314328 8_1:+91155862 Msa1225700:three_prime_UTR
TATCACAATTGGTGCTGGTT+TGG 0.315135 8_1:+91155569 Msa1225700:CDS
CAGTCACCAATTCCCTTATA+TGG 0.327603 8_1:-91154103 None:intergenic
TGCTAGTTTCCTGTTGGGAT+GGG 0.328388 8_1:+91155545 Msa1225700:CDS
AATTATACCCTCATCCTTCA+TGG 0.333517 8_1:-91154137 None:intergenic
TGGAACAAACAGAAGGATTC+CGG 0.337846 8_1:-91155851 None:intergenic
CTGAACCGAGGCCTCTCTTC+TGG 0.339255 8_1:+91152735 Msa1225700:five_prime_UTR
TTAGCATCTGGTGGAGCTGC+TGG 0.340273 8_1:+91154780 Msa1225700:CDS
AACATATTGCGTGCTGTTGC+AGG 0.340667 8_1:+91155732 Msa1225700:CDS
AATGGAGGAGTGCAGACTTC+TGG 0.341348 8_1:+91153884 Msa1225700:CDS
TTCTTTGCTAGTTTCCTGTT+GGG 0.343196 8_1:+91155540 Msa1225700:CDS
AGAAGAATGATGATGACTTC+TGG 0.353166 8_1:+91155618 Msa1225700:CDS
AAGCTGCAGCTGGTCTTGTT+TGG 0.353609 8_1:+91155780 Msa1225700:CDS
CCTAACTTCTGAGCAATTGA+TGG 0.358830 8_1:-91153785 None:intergenic
TTACAGTCTGATGGCATTGC+TGG 0.359420 8_1:+91154930 Msa1225700:CDS
CCATCAATTGCTCAGAAGTT+AGG 0.373250 8_1:+91153785 Msa1225700:CDS
AGCAATTTAATTCGTTCAAT+AGG 0.374655 8_1:-91154034 None:intergenic
GGCTACTGGAAGTGGTTTGC+TGG 0.374984 8_1:+91154753 Msa1225700:CDS
AAACCCTAGTCTCTTCATTT+CGG 0.377194 8_1:+91152645 Msa1225700:five_prime_UTR
TTTGGAAAGAAATATGGTTC+TGG 0.380189 8_1:+91155798 Msa1225700:CDS
TTATCAACTTAAATTTCATT+TGG 0.388596 8_1:+91155956 Msa1225700:three_prime_UTR
CTTTGCGTCATTTGCCAAAC+GGG 0.396020 8_1:-91154847 None:intergenic
TTGCTAGTTTCCTGTTGGGA+TGG 0.404433 8_1:+91155544 Msa1225700:CDS
AGATGTTGAATCCACGATAA+AGG 0.405874 8_1:-91154953 None:intergenic
GGATTATGCCCGTACCCGTT+TGG 0.408041 8_1:+91154833 Msa1225700:CDS
CTGAAACCAGTTGTCTTGGT+TGG 0.408866 8_1:+91155029 Msa1225700:CDS
TCTGAGCCATATAAGGGAAT+TGG 0.421286 8_1:+91154097 Msa1225700:CDS
TCTTCTACGCACAGTGTCAA+TGG 0.421926 8_1:-91155601 None:intergenic
GTTAGAGTTGGCGCTAAGCC+TGG 0.422723 8_1:-91153828 None:intergenic
CAGGTTATCTGAGCCATATA+AGG 0.423186 8_1:+91154090 Msa1225700:CDS
TAGCATCTGGTGGAGCTGCT+GGG 0.424080 8_1:+91154781 Msa1225700:CDS
GTGTATCGTGGTCTTTACTT+TGG 0.436559 8_1:+91154993 Msa1225700:CDS
TGGGGTATCACAATTGGTGC+TGG 0.437821 8_1:+91155564 Msa1225700:CDS
CCAAACCATCGTTGCAAAAG+AGG 0.440517 8_1:+91155677 Msa1225700:CDS
GGAACAAACAGAAGGATTCC+GGG 0.442602 8_1:-91155850 None:intergenic
GGTCCTTTCTCTGCTGGAGA+AGG 0.443959 8_1:-91153944 None:intergenic
TGACGCAAAGGCTGCAAAGA+AGG 0.445560 8_1:+91154860 Msa1225700:CDS
TTGGGATGGGGTATCACAAT+TGG 0.445710 8_1:+91155558 Msa1225700:CDS
CCAGCTGGTCCTTTCTCTGC+TGG 0.446086 8_1:-91153950 None:intergenic
TTTCTTTGCTAGTTTCCTGT+TGG 0.448910 8_1:+91155539 Msa1225700:CDS
CGTCATTTGCCAAACGGGTA+CGG 0.451569 8_1:-91154842 None:intergenic
TTCTCTGAAACCAGTTGTCT+TGG 0.454364 8_1:+91155025 Msa1225700:CDS
ACGTCCGGTACTTTCACTAA+TGG 0.459227 8_1:+91153866 Msa1225700:CDS
CACTTTGTAGGCTGCAATCA+TGG 0.461883 8_1:+91153745 Msa1225700:exon
TTGCGTGCTGTTGCAGGTGC+TGG 0.462273 8_1:+91155738 Msa1225700:CDS
AAGAAATATGGTTCTGGCGG+CGG 0.463431 8_1:+91155804 Msa1225700:CDS
AGGAGTGCAGACTTCTGGTT+TGG 0.468015 8_1:+91153889 Msa1225700:CDS
AAACCAGTTGTCTTGGTTGG+TGG 0.469067 8_1:+91155032 Msa1225700:CDS
TTGTGATACCCCATCCCAAC+AGG 0.471309 8_1:-91155554 None:intergenic
CACAGTGTCAATGGGATAAG+AGG 0.473276 8_1:-91155592 None:intergenic
ATTCAGATTATCACCTGAGT+AGG 0.479406 8_1:-91154202 None:intergenic
GCTAGTTTCCTGTTGGGATG+GGG 0.479609 8_1:+91155546 Msa1225700:CDS
TGTCTTGGTTGGTGGGATGC+AGG 0.479765 8_1:+91155040 Msa1225700:CDS
ATCCCACCAACCAAGACAAC+TGG 0.485200 8_1:-91155035 None:intergenic
AGGTTATCTGAGCCATATAA+GGG 0.488890 8_1:+91154091 Msa1225700:CDS
ACTATAATCTCTAAATAGAA+AGG 0.489151 8_1:-91155932 None:intergenic
CCTTTGCGTCATTTGCCAAA+CGG 0.490345 8_1:-91154848 None:intergenic
GTCATTTGCCAAACGGGTAC+GGG 0.492794 8_1:-91154841 None:intergenic
AAATGAAAATCAGTATAAAT+GGG 0.494124 8_1:-91152672 None:intergenic
ACAGAGATGGCTACTGGAAG+TGG 0.495428 8_1:+91154745 Msa1225700:CDS
GCTGGGAATTTAGCATCTGG+TGG 0.501424 8_1:+91154771 Msa1225700:CDS
AGCAATGCCATCAGACTGTA+AGG 0.504971 8_1:-91154928 None:intergenic
TACAGGAATTACTCTACGTC+CGG 0.508953 8_1:+91153851 Msa1225700:CDS
GTCCCTTCTCCAGCAGAGAA+AGG 0.510593 8_1:+91153941 Msa1225700:CDS
CTTCTACGCACAGTGTCAAT+GGG 0.512712 8_1:-91155600 None:intergenic
GTCCTTTCTCTGCTGGAGAA+GGG 0.517120 8_1:-91153943 None:intergenic
TTTGCTGGGAATTTAGCATC+TGG 0.520737 8_1:+91154768 Msa1225700:CDS
GTAATTCCTGTAGTTAGAGT+TGG 0.521037 8_1:-91153840 None:intergenic
AACCAGTTGTCTTGGTTGGT+GGG 0.523148 8_1:+91155033 Msa1225700:CDS
TGCTCGAACCATGAAGGATG+AGG 0.524575 8_1:+91154129 Msa1225700:CDS
TGGTTATGACAAGCTGCAGC+TGG 0.524956 8_1:+91155770 Msa1225700:CDS
AGCATCTGGTGGAGCTGCTG+GGG 0.525003 8_1:+91154782 Msa1225700:CDS
ATTAATACTCGTTGTGATTG+CGG 0.526257 8_1:+91156039 Msa1225700:three_prime_UTR
CCAGCAGAGAAAGGACCAGC+TGG 0.541965 8_1:+91153950 Msa1225700:CDS
GGCATTGCTGGCCTTTATCG+TGG 0.542365 8_1:+91154942 Msa1225700:CDS
TTATACCAGAAGAGAGGCCT+CGG 0.547222 8_1:-91152740 None:intergenic
ATACTCGTTGTGATTGCGGA+TGG 0.555346 8_1:+91156043 Msa1225700:three_prime_UTR
GCTACTGGAAGTGGTTTGCT+GGG 0.556481 8_1:+91154754 Msa1225700:CDS
GGATTCAACATCTCGTGTGT+TGG 0.556905 8_1:+91154963 Msa1225700:CDS
ATGAAATGCTCAAAAGTGGC+AGG 0.556927 8_1:+91154071 Msa1225700:CDS
GCACCGAAATGAAGAGACTA+GGG 0.568820 8_1:-91152648 None:intergenic
TTAGCGCCAACTCTAACTAC+AGG 0.570302 8_1:+91153834 Msa1225700:CDS
TTCAGATTATCACCTGAGTA+GGG 0.571644 8_1:-91154201 None:intergenic
GACGCAAAGGCTGCAAAGAA+GGG 0.572621 8_1:+91154861 Msa1225700:CDS
TGAGAGGCAGTTTAATGGAA+TGG 0.581022 8_1:+91154887 Msa1225700:CDS
CAAACCATCGTTGCAAAAGA+GGG 0.586013 8_1:+91155678 Msa1225700:CDS
CAGGATGAAATGCTCAAAAG+TGG 0.586952 8_1:+91154067 Msa1225700:CDS
AGCACCGAAATGAAGAGACT+AGG 0.589050 8_1:-91152649 None:intergenic
AAGAAAACCTTACAGTCTGA+TGG 0.592392 8_1:+91154921 Msa1225700:CDS
TAGGCTGCAATCATGGCCGA+TGG 0.596371 8_1:+91153752 Msa1225700:exon
CAAAATTATCCAAATCACAA+TGG 0.597881 8_1:-91155871 None:intergenic
TAAATTGCTTATCCAAAACC+AGG 0.601587 8_1:+91154048 Msa1225700:CDS
GGTATAATTGCTCTGTGGAG+AGG 0.606231 8_1:+91154151 Msa1225700:CDS
CTCGGTTCAGATCGCGAGAG+AGG 0.607516 8_1:-91152722 None:intergenic
GCTCGAACCATGAAGGATGA+GGG 0.608674 8_1:+91154130 Msa1225700:CDS
AGAATAGACAAATAAGAGTG+AGG 0.609590 8_1:-91154808 None:intergenic
TGATGGATGATGTGGTCCAT+CGG 0.611029 8_1:-91153768 None:intergenic
TCCTCCATTAGTGAAAGTAC+CGG 0.611370 8_1:-91153870 None:intergenic
CTCTCTCGCGATCTGAACCG+AGG 0.611496 8_1:+91152723 Msa1225700:five_prime_UTR
TCAATTGCTCAGAAGTTAGG+TGG 0.616712 8_1:+91153788 Msa1225700:CDS
GGAAAGAAATATGGTTCTGG+CGG 0.618520 8_1:+91155801 Msa1225700:CDS
CTGCAAAGAAGGGTGGTGAG+AGG 0.621915 8_1:+91154871 Msa1225700:CDS
CCGTTTGGCAAATGACGCAA+AGG 0.622778 8_1:+91154848 Msa1225700:CDS
TATCAGATACTTCCCTACTC+AGG 0.622842 8_1:+91154189 Msa1225700:CDS
ATCACAATGGAACAAACAGA+AGG 0.628087 8_1:-91155858 None:intergenic
TCCGGTACTTTCACTAATGG+AGG 0.638119 8_1:+91153869 Msa1225700:CDS
TGATGACGATAATAATTACC+CGG 0.640899 8_1:+91155832 Msa1225700:three_prime_UTR
TGAGCAATTGATGGATGATG+TGG 0.652110 8_1:-91153776 None:intergenic
GAGGTGTTATACCAGAAGAG+AGG 0.652203 8_1:-91152746 None:intergenic
ATAGACAAATAAGAGTGAGG+AGG 0.652278 8_1:-91154805 None:intergenic
GTTGGAATTATAGTGTATCG+TGG 0.683295 8_1:+91154981 Msa1225700:CDS
GCAAAGGCTGCAAAGAAGGG+TGG 0.689413 8_1:+91154864 Msa1225700:CDS
ATGAGGGTATAATTGCTCTG+TGG 0.733403 8_1:+91154146 Msa1225700:CDS
GGGACAGTAAATGACGACAG+AGG 0.743353 8_1:-91153923 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAAATCAGTATAAAT+GGG - chr8_1:91152675-91152694 None:intergenic 15.0%
!!! TCATATAAATTAATTTTGCT+AGG + chr8_1:91153041-91153060 Msa1225700:intron 15.0%
!!! CATATAAATTAATTTTGCTA+GGG + chr8_1:91153042-91153061 Msa1225700:intron 15.0%
!! AAAATGTATTTGTTTCAATT+TGG + chr8_1:91153613-91153632 Msa1225700:intron 15.0%
!! CTTATTATATATATTGAGAT+TGG + chr8_1:91154469-91154488 Msa1225700:intron 15.0%
!! AGAATGAAATTAGAAATTAA+AGG - chr8_1:91154659-91154678 None:intergenic 15.0%
!!! TGTACAAAATTTGATTTTAA+CGG + chr8_1:91155065-91155084 Msa1225700:intron 15.0%
!! TGAACATTACTAAAATAATT+GGG - chr8_1:91155478-91155497 None:intergenic 15.0%
!! ATGAACATTACTAAAATAAT+TGG - chr8_1:91155479-91155498 None:intergenic 15.0%
!!! ATTAATATTTTCCAGAATTT+AGG + chr8_1:91155908-91155927 Msa1225700:three_prime_UTR 15.0%
!!! TTAATATTTTCCAGAATTTA+GGG + chr8_1:91155909-91155928 Msa1225700:three_prime_UTR 15.0%
!! TTATCAACTTAAATTTCATT+TGG + chr8_1:91155956-91155975 Msa1225700:three_prime_UTR 15.0%
!! GAAATGAAAATCAGTATAAA+TGG - chr8_1:91152676-91152695 None:intergenic 20.0%
!!! ACTTTTGTTCAAATTATTAC+CGG - chr8_1:91153194-91153213 None:intergenic 20.0%
!!! AACATCAATTTTTTGTTGTT+GGG + chr8_1:91153524-91153543 Msa1225700:intron 20.0%
!!! ATTTTTCTGCTTTTAACTTT+TGG + chr8_1:91153684-91153703 Msa1225700:intron 20.0%
!! TTATATATATTGAGATTGGA+AGG + chr8_1:91154473-91154492 Msa1225700:intron 20.0%
!! TATATATATTGAGATTGGAA+GGG + chr8_1:91154474-91154493 Msa1225700:intron 20.0%
!!! AATTTCATTCTTTTCCTTTT+AGG + chr8_1:91154668-91154687 Msa1225700:intron 20.0%
!!! AATTTTAAAAAAGACAGAGA+TGG + chr8_1:91154732-91154751 Msa1225700:CDS 20.0%
!!! GTACAAAATTTGATTTTAAC+GGG + chr8_1:91155066-91155085 Msa1225700:intron 20.0%
!!! GGAATAATTTTAATCTAACA+TGG - chr8_1:91155116-91155135 None:intergenic 20.0%
!!! TAAAATTATTCCTCTTTTGT+TGG + chr8_1:91155124-91155143 Msa1225700:intron 20.0%
!!! TTTTAATAGAAAGATGTCTA+GGG - chr8_1:91155361-91155380 None:intergenic 20.0%
!! TTGAAACTTTAATTGAACAA+GGG + chr8_1:91155416-91155435 Msa1225700:intron 20.0%
!! GAACATTACTAAAATAATTG+GGG - chr8_1:91155477-91155496 None:intergenic 20.0%
!! ACTATAATCTCTAAATAGAA+AGG - chr8_1:91155935-91155954 None:intergenic 20.0%
! AGCATAAAAACGAAAAGAAA+TGG - chr8_1:91152821-91152840 None:intergenic 25.0%
!!! TTTTTAAGCTGATTATGAAG+CGG + chr8_1:91152942-91152961 Msa1225700:intron 25.0%
!! ATTAATTTTGCTAGGGTTTA+AGG + chr8_1:91153049-91153068 Msa1225700:intron 25.0%
! ATAAAGTGATCAACAAAAAC+AGG - chr8_1:91153402-91153421 None:intergenic 25.0%
!!! GAACATCAATTTTTTGTTGT+TGG + chr8_1:91153523-91153542 Msa1225700:intron 25.0%
!!! ACATCAATTTTTTGTTGTTG+GGG + chr8_1:91153525-91153544 Msa1225700:intron 25.0%
!!! TTTTGGAATTTTTGAATCGT+TGG + chr8_1:91153701-91153720 Msa1225700:intron 25.0%
!!! ATTTTTGATCGATTTTCTGA+TGG + chr8_1:91153973-91153992 Msa1225700:CDS 25.0%
!!! TTTTTGATCGATTTTCTGAT+GGG + chr8_1:91153974-91153993 Msa1225700:CDS 25.0%
! AGCAATTTAATTCGTTCAAT+AGG - chr8_1:91154037-91154056 None:intergenic 25.0%
! ATAAGTTATATGCGTTGTAA+GGG + chr8_1:91154273-91154292 Msa1225700:intron 25.0%
! TTAGATTTCCACAAATTTCT+TGG - chr8_1:91154328-91154347 None:intergenic 25.0%
! AGAAATTTGTGGAAATCTAA+TGG + chr8_1:91154328-91154347 Msa1225700:intron 25.0%
! TGTAAATGTTAATAGCAAGA+AGG - chr8_1:91154531-91154550 None:intergenic 25.0%
!! GAAAATGTTTTGTATGTCTA+GGG - chr8_1:91154555-91154574 None:intergenic 25.0%
!! AGAAAATGTTTTGTATGTCT+AGG - chr8_1:91154556-91154575 None:intergenic 25.0%
!! ACTCTTATTTGTCTATTCTT+TGG + chr8_1:91154812-91154831 Msa1225700:CDS 25.0%
!!! TTTGATTTTAACGGGAAATA+TGG + chr8_1:91155074-91155093 Msa1225700:intron 25.0%
!!! TTACTTTGATTTTGTTTGTC+AGG + chr8_1:91155149-91155168 Msa1225700:intron 25.0%
!!! GTAAAAGGTGTTTAATAGAA+AGG - chr8_1:91155339-91155358 None:intergenic 25.0%
!!! GTTTTAATAGAAAGATGTCT+AGG - chr8_1:91155362-91155381 None:intergenic 25.0%
! CTTGAAACTTTAATTGAACA+AGG + chr8_1:91155415-91155434 Msa1225700:intron 25.0%
! CTAAAAGAAAGTCAAAATTG+TGG - chr8_1:91155454-91155473 None:intergenic 25.0%
!! GTTCATCATTTTCTTATCTA+TGG + chr8_1:91155493-91155512 Msa1225700:intron 25.0%
! CAAAATTATCCAAATCACAA+TGG - chr8_1:91155874-91155893 None:intergenic 25.0%
!!! CATTGTGATTTGGATAATTT+TGG + chr8_1:91155872-91155891 Msa1225700:three_prime_UTR 25.0%
AATCGTTGAGAAAATGGAAA+TGG - chr8_1:91152796-91152815 None:intergenic 30.0%
ATGGAAAATCGTTGAGAAAA+TGG - chr8_1:91152802-91152821 None:intergenic 30.0%
TACAATAAAAACGATTGCAG+AGG - chr8_1:91152899-91152918 None:intergenic 30.0%
TTGAATGTAATCACATGTGT+CGG + chr8_1:91153221-91153240 Msa1225700:intron 30.0%
!! ATTTTCTTCTATGAAGCACT+AGG - chr8_1:91153366-91153385 None:intergenic 30.0%
! TTTGAATCGTTGGTATGTTT+TGG + chr8_1:91153711-91153730 Msa1225700:intron 30.0%
TAAATTGCTTATCCAAAACC+AGG + chr8_1:91154048-91154067 Msa1225700:CDS 30.0%
CTTACAACGCATATAACTTA+TGG - chr8_1:91154274-91154293 None:intergenic 30.0%
CATAAGTTATATGCGTTGTA+AGG + chr8_1:91154272-91154291 Msa1225700:intron 30.0%
TTAACACAATATACACTTCG+AGG - chr8_1:91154304-91154323 None:intergenic 30.0%
GTGTTAAACCAAGAAATTTG+TGG + chr8_1:91154317-91154336 Msa1225700:intron 30.0%
AGCAAGAAGGATACAAAAAT+AGG - chr8_1:91154518-91154537 None:intergenic 30.0%
!! CTTTTAAGGATTACTTCAAG+AGG + chr8_1:91154703-91154722 Msa1225700:CDS 30.0%
AGAATAGACAAATAAGAGTG+AGG - chr8_1:91154811-91154830 None:intergenic 30.0%
CAAAGTAAAACCAACAAAAG+AGG - chr8_1:91155137-91155156 None:intergenic 30.0%
! ATATACACATTACTGATTGC+AGG - chr8_1:91155311-91155330 None:intergenic 30.0%
! AAGGTGTTTAATAGAAAGGA+AGG - chr8_1:91155335-91155354 None:intergenic 30.0%
! CTATGATGTCTAGGATATAA+AGG - chr8_1:91155386-91155405 None:intergenic 30.0%
TTTAGCAATCTATGATGTCT+AGG - chr8_1:91155395-91155414 None:intergenic 30.0%
! ATGGTACTTTTCTTGTTAAC+AGG + chr8_1:91155512-91155531 Msa1225700:intron 30.0%
!! GTCTTGTTTGGAAAGAAATA+TGG + chr8_1:91155792-91155811 Msa1225700:CDS 30.0%
TTTGGAAAGAAATATGGTTC+TGG + chr8_1:91155798-91155817 Msa1225700:CDS 30.0%
! TGATGACGATAATAATTACC+CGG + chr8_1:91155832-91155851 Msa1225700:three_prime_UTR 30.0%
GTATTAATTACCGAACCAAA+AGG - chr8_1:91156027-91156046 None:intergenic 30.0%
ATTAATACTCGTTGTGATTG+CGG + chr8_1:91156039-91156058 Msa1225700:three_prime_UTR 30.0%
AAAAATAAGAAGAGGGGCAA+AGG + chr8_1:91152608-91152627 Msa1225700:five_prime_UTR 35.0%
AAACCCTAGTCTCTTCATTT+CGG + chr8_1:91152645-91152664 Msa1225700:five_prime_UTR 35.0%
GAGAAAATGGAAATGGTGAT+AGG - chr8_1:91152789-91152808 None:intergenic 35.0%
! TTTGCTAGGGTTTAAGGTTT+AGG + chr8_1:91153055-91153074 Msa1225700:intron 35.0%
TGAATGTAATCACATGTGTC+GGG + chr8_1:91153222-91153241 Msa1225700:intron 35.0%
!! TATTAGAAGTGTCGGTACTA+AGG + chr8_1:91153247-91153266 Msa1225700:intron 35.0%
TATGTAATCCAGAGTTCAGT+CGG - chr8_1:91153295-91153314 None:intergenic 35.0%
GAGAACAAAATGCATACACA+TGG - chr8_1:91153584-91153603 None:intergenic 35.0%
!!! TGGTATGTTTTGGTTTTTGC+AGG + chr8_1:91153721-91153740 Msa1225700:intron 35.0%
GTTAGGTGGACATTCTTATT+TGG + chr8_1:91153802-91153821 Msa1225700:CDS 35.0%
! GACATTCTTATTTGGTTTCC+AGG + chr8_1:91153810-91153829 Msa1225700:CDS 35.0%
GTAATTCCTGTAGTTAGAGT+TGG - chr8_1:91153843-91153862 None:intergenic 35.0%
AAATCGATCAAAAATCCAGC+TGG - chr8_1:91153968-91153987 None:intergenic 35.0%
AGGTTATCTGAGCCATATAA+GGG + chr8_1:91154091-91154110 Msa1225700:CDS 35.0%
AATTATACCCTCATCCTTCA+TGG - chr8_1:91154140-91154159 None:intergenic 35.0%
TTCAGATTATCACCTGAGTA+GGG - chr8_1:91154204-91154223 None:intergenic 35.0%
ATTCAGATTATCACCTGAGT+AGG - chr8_1:91154205-91154224 None:intergenic 35.0%
TGTGGTGTTTGTATAAGTAG+AGG - chr8_1:91154373-91154392 None:intergenic 35.0%
! ACAGTGACAGTTTTTGTATG+TGG - chr8_1:91154391-91154410 None:intergenic 35.0%
AAAAACTGTCACTGTGATTC+CGG + chr8_1:91154396-91154415 Msa1225700:intron 35.0%
! TTTCCATGTGTTGTCTTGTT+TGG + chr8_1:91154430-91154449 Msa1225700:intron 35.0%
!! TTCCATGTGTTGTCTTGTTT+GGG + chr8_1:91154431-91154450 Msa1225700:intron 35.0%
!! CTCTTTTGGTGATTGAATGT+TGG + chr8_1:91154610-91154629 Msa1225700:intron 35.0%
ATAGACAAATAAGAGTGAGG+AGG - chr8_1:91154808-91154827 None:intergenic 35.0%
AAGAAAACCTTACAGTCTGA+TGG + chr8_1:91154921-91154940 Msa1225700:CDS 35.0%
AGATGTTGAATCCACGATAA+AGG - chr8_1:91154956-91154975 None:intergenic 35.0%
GTTGGAATTATAGTGTATCG+TGG + chr8_1:91154981-91155000 Msa1225700:CDS 35.0%
! AGAAAGATGTCTAGGGTAAA+AGG - chr8_1:91155354-91155373 None:intergenic 35.0%
! TTTCTTTGCTAGTTTCCTGT+TGG + chr8_1:91155539-91155558 Msa1225700:CDS 35.0%
! TTCTTTGCTAGTTTCCTGTT+GGG + chr8_1:91155540-91155559 Msa1225700:CDS 35.0%
! AGAAGAATGATGATGACTTC+TGG + chr8_1:91155618-91155637 Msa1225700:CDS 35.0%
! GGTACTAAGTCTCTTTTCAA+AGG + chr8_1:91155699-91155718 Msa1225700:CDS 35.0%
ATCACAATGGAACAAACAGA+AGG - chr8_1:91155861-91155880 None:intergenic 35.0%
CTGTTTGTTCCATTGTGATT+TGG + chr8_1:91155862-91155881 Msa1225700:three_prime_UTR 35.0%
AATAGAAAGGCCCTAAATTC+TGG - chr8_1:91155922-91155941 None:intergenic 35.0%
TTAATTACCGAACCAAAAGG+AGG - chr8_1:91156024-91156043 None:intergenic 35.0%
TGTATCAAACAGTGAAGCAC+CGG + chr8_1:91153137-91153156 Msa1225700:intron 40.0%
! TATTACCGGTGTCAACATGT+CGG - chr8_1:91153180-91153199 None:intergenic 40.0%
! GTCGGGATTATTAGAAGTGT+CGG + chr8_1:91153239-91153258 Msa1225700:intron 40.0%
ATGTAATCCAGAGTTCAGTC+GGG - chr8_1:91153294-91153313 None:intergenic 40.0%
!! TTTGTGTGCATGATTTGCTG+TGG + chr8_1:91153471-91153490 Msa1225700:intron 40.0%
!! GTTTTTGCAGGTCACTTTGT+AGG + chr8_1:91153733-91153752 Msa1225700:intron 40.0%
! TGAGCAATTGATGGATGATG+TGG - chr8_1:91153779-91153798 None:intergenic 40.0%
CCTAACTTCTGAGCAATTGA+TGG - chr8_1:91153788-91153807 None:intergenic 40.0%
CCATCAATTGCTCAGAAGTT+AGG + chr8_1:91153785-91153804 Msa1225700:CDS 40.0%
TCAATTGCTCAGAAGTTAGG+TGG + chr8_1:91153788-91153807 Msa1225700:CDS 40.0%
TACAGGAATTACTCTACGTC+CGG + chr8_1:91153851-91153870 Msa1225700:CDS 40.0%
! TCCTCCATTAGTGAAAGTAC+CGG - chr8_1:91153873-91153892 None:intergenic 40.0%
!! TTGATCGATTTTCTGATGGG+AGG + chr8_1:91153977-91153996 Msa1225700:CDS 40.0%
! TGAGCATTTCATCCTGGTTT+TGG - chr8_1:91154063-91154082 None:intergenic 40.0%
! CACTTTTGAGCATTTCATCC+TGG - chr8_1:91154069-91154088 None:intergenic 40.0%
CAGGATGAAATGCTCAAAAG+TGG + chr8_1:91154067-91154086 Msa1225700:CDS 40.0%
ATGAAATGCTCAAAAGTGGC+AGG + chr8_1:91154071-91154090 Msa1225700:CDS 40.0%
CAGGTTATCTGAGCCATATA+AGG + chr8_1:91154090-91154109 Msa1225700:CDS 40.0%
TCTGAGCCATATAAGGGAAT+TGG + chr8_1:91154097-91154116 Msa1225700:CDS 40.0%
CAGTCACCAATTCCCTTATA+TGG - chr8_1:91154106-91154125 None:intergenic 40.0%
! ATGAGGGTATAATTGCTCTG+TGG + chr8_1:91154146-91154165 Msa1225700:CDS 40.0%
TATCAGATACTTCCCTACTC+AGG + chr8_1:91154189-91154208 Msa1225700:CDS 40.0%
CATGGAAAATCTCATGACTC+CGG - chr8_1:91154418-91154437 None:intergenic 40.0%
AACCCAAACAAGACAACACA+TGG - chr8_1:91154436-91154455 None:intergenic 40.0%
! GATGCATGTGAATGCTCTTT+TGG + chr8_1:91154596-91154615 Msa1225700:intron 40.0%
AGCAAAGTTCAGAGCCTAAA+AGG - chr8_1:91154685-91154704 None:intergenic 40.0%
!!! GGCTCTGAACTTTGCTTTTA+AGG + chr8_1:91154689-91154708 Msa1225700:intron 40.0%
AAAAAGACAGAGATGGCTAC+TGG + chr8_1:91154739-91154758 Msa1225700:CDS 40.0%
TTTGCTGGGAATTTAGCATC+TGG + chr8_1:91154768-91154787 Msa1225700:CDS 40.0%
TGAGAGGCAGTTTAATGGAA+TGG + chr8_1:91154887-91154906 Msa1225700:CDS 40.0%
GTGTATCGTGGTCTTTACTT+TGG + chr8_1:91154993-91155012 Msa1225700:CDS 40.0%
!! TTCTCTGAAACCAGTTGTCT+TGG + chr8_1:91155025-91155044 Msa1225700:CDS 40.0%
!! TATCACAATTGGTGCTGGTT+TGG + chr8_1:91155569-91155588 Msa1225700:CDS 40.0%
CAAACCATCGTTGCAAAAGA+GGG + chr8_1:91155678-91155697 Msa1225700:CDS 40.0%
!! AAGTCTCTTTTCAAAGGTGC+TGG + chr8_1:91155705-91155724 Msa1225700:CDS 40.0%
!! GGAAAGAAATATGGTTCTGG+CGG + chr8_1:91155801-91155820 Msa1225700:CDS 40.0%
TGGAACAAACAGAAGGATTC+CGG - chr8_1:91155854-91155873 None:intergenic 40.0%
!! TTTCAGACCTCCTTTTGGTT+CGG + chr8_1:91156014-91156033 Msa1225700:intron 40.0%
GCACCGAAATGAAGAGACTA+GGG - chr8_1:91152651-91152670 None:intergenic 45.0%
! AGCACCGAAATGAAGAGACT+AGG - chr8_1:91152652-91152671 None:intergenic 45.0%
TTATACCAGAAGAGAGGCCT+CGG - chr8_1:91152743-91152762 None:intergenic 45.0%
! GAGGTGTTATACCAGAAGAG+AGG - chr8_1:91152749-91152768 None:intergenic 45.0%
! GGAAAAAAGAGAGCGTGAAG+AGG - chr8_1:91152768-91152787 None:intergenic 45.0%
! GTATCAAACAGTGAAGCACC+GGG + chr8_1:91153138-91153157 Msa1225700:intron 45.0%
ACTCCGGTTCTTAGTGGAAA+GGG - chr8_1:91153320-91153339 None:intergenic 45.0%
GTTAACACTCCGGTTCTTAG+TGG - chr8_1:91153326-91153345 None:intergenic 45.0%
GTCTGTGTGTGTTAACACTC+CGG - chr8_1:91153336-91153355 None:intergenic 45.0%
CACAAAGCAAAGTCCATCAC+AGG - chr8_1:91153502-91153521 None:intergenic 45.0%
CACTTTGTAGGCTGCAATCA+TGG + chr8_1:91153745-91153764 Msa1225700:exon 45.0%
! TGATGGATGATGTGGTCCAT+CGG - chr8_1:91153771-91153790 None:intergenic 45.0%
TTAGCGCCAACTCTAACTAC+AGG + chr8_1:91153834-91153853 Msa1225700:CDS 45.0%
ACGTCCGGTACTTTCACTAA+TGG + chr8_1:91153866-91153885 Msa1225700:CDS 45.0%
TCCGGTACTTTCACTAATGG+AGG + chr8_1:91153869-91153888 Msa1225700:CDS 45.0%
! CTGTTTTGCTCGAACCATGA+AGG + chr8_1:91154123-91154142 Msa1225700:CDS 45.0%
GGTATAATTGCTCTGTGGAG+AGG + chr8_1:91154151-91154170 Msa1225700:CDS 45.0%
CTTTGCGTCATTTGCCAAAC+GGG - chr8_1:91154850-91154869 None:intergenic 45.0%
CCTTTGCGTCATTTGCCAAA+CGG - chr8_1:91154851-91154870 None:intergenic 45.0%
AGCAATGCCATCAGACTGTA+AGG - chr8_1:91154931-91154950 None:intergenic 45.0%
TTACAGTCTGATGGCATTGC+TGG + chr8_1:91154930-91154949 Msa1225700:CDS 45.0%
GGATTCAACATCTCGTGTGT+TGG + chr8_1:91154963-91154982 Msa1225700:CDS 45.0%
CTGAAACCAGTTGTCTTGGT+TGG + chr8_1:91155029-91155048 Msa1225700:CDS 45.0%
AAACCAGTTGTCTTGGTTGG+TGG + chr8_1:91155032-91155051 Msa1225700:CDS 45.0%
AACCAGTTGTCTTGGTTGGT+GGG + chr8_1:91155033-91155052 Msa1225700:CDS 45.0%
! TTGCTAGTTTCCTGTTGGGA+TGG + chr8_1:91155544-91155563 Msa1225700:CDS 45.0%
! TGCTAGTTTCCTGTTGGGAT+GGG + chr8_1:91155545-91155564 Msa1225700:CDS 45.0%
! TTGGGATGGGGTATCACAAT+TGG + chr8_1:91155558-91155577 Msa1225700:CDS 45.0%
CACAGTGTCAATGGGATAAG+AGG - chr8_1:91155595-91155614 None:intergenic 45.0%
CTTCTACGCACAGTGTCAAT+GGG - chr8_1:91155603-91155622 None:intergenic 45.0%
TCTTCTACGCACAGTGTCAA+TGG - chr8_1:91155604-91155623 None:intergenic 45.0%
! CCTCTTTTGCAACGATGGTT+TGG - chr8_1:91155680-91155699 None:intergenic 45.0%
CCAAACCATCGTTGCAAAAG+AGG + chr8_1:91155677-91155696 Msa1225700:CDS 45.0%
! AGTACCCTCTTTTGCAACGA+TGG - chr8_1:91155685-91155704 None:intergenic 45.0%
! AACATATTGCGTGCTGTTGC+AGG + chr8_1:91155732-91155751 Msa1225700:CDS 45.0%
!! AAGAAATATGGTTCTGGCGG+CGG + chr8_1:91155804-91155823 Msa1225700:CDS 45.0%
GGAACAAACAGAAGGATTCC+GGG - chr8_1:91155853-91155872 None:intergenic 45.0%
! AAAGGAGGTCTGAAAGTGCA+AGG - chr8_1:91156009-91156028 None:intergenic 45.0%
! TGCACTTTCAGACCTCCTTT+TGG + chr8_1:91156009-91156028 Msa1225700:intron 45.0%
ATACTCGTTGTGATTGCGGA+TGG + chr8_1:91156043-91156062 Msa1225700:three_prime_UTR 45.0%
CAACACCGACATGTTGACAC+CGG + chr8_1:91153172-91153191 Msa1225700:intron 50.0%
GTCGGTACTAAGGTTCCTAG+TGG + chr8_1:91153257-91153276 Msa1225700:intron 50.0%
TAATCCAGAGTTCAGTCGGG+AGG - chr8_1:91153291-91153310 None:intergenic 50.0%
AGCCCCTTTCCACTAAGAAC+CGG + chr8_1:91153314-91153333 Msa1225700:intron 50.0%
CTCCGGTTCTTAGTGGAAAG+GGG - chr8_1:91153319-91153338 None:intergenic 50.0%
CACTCCGGTTCTTAGTGGAA+AGG - chr8_1:91153321-91153340 None:intergenic 50.0%
!! GTGTGCATGATTTGCTGTGG+TGG + chr8_1:91153474-91153493 Msa1225700:intron 50.0%
! AATGGAGGAGTGCAGACTTC+TGG + chr8_1:91153884-91153903 Msa1225700:CDS 50.0%
! AGGAGTGCAGACTTCTGGTT+TGG + chr8_1:91153889-91153908 Msa1225700:CDS 50.0%
GGGACAGTAAATGACGACAG+AGG - chr8_1:91153926-91153945 None:intergenic 50.0%
GTCCTTTCTCTGCTGGAGAA+GGG - chr8_1:91153946-91153965 None:intergenic 50.0%
TGCTCGAACCATGAAGGATG+AGG + chr8_1:91154129-91154148 Msa1225700:CDS 50.0%
GCTCGAACCATGAAGGATGA+GGG + chr8_1:91154130-91154149 Msa1225700:CDS 50.0%
ACAGAGATGGCTACTGGAAG+TGG + chr8_1:91154745-91154764 Msa1225700:CDS 50.0%
!! GCTACTGGAAGTGGTTTGCT+GGG + chr8_1:91154754-91154773 Msa1225700:CDS 50.0%
GCTGGGAATTTAGCATCTGG+TGG + chr8_1:91154771-91154790 Msa1225700:CDS 50.0%
GTCATTTGCCAAACGGGTAC+GGG - chr8_1:91154844-91154863 None:intergenic 50.0%
CGTCATTTGCCAAACGGGTA+CGG - chr8_1:91154845-91154864 None:intergenic 50.0%
CCGTTTGGCAAATGACGCAA+AGG + chr8_1:91154848-91154867 Msa1225700:CDS 50.0%
TGACGCAAAGGCTGCAAAGA+AGG + chr8_1:91154860-91154879 Msa1225700:CDS 50.0%
GACGCAAAGGCTGCAAAGAA+GGG + chr8_1:91154861-91154880 Msa1225700:CDS 50.0%
GGTGGTGAGAGGCAGTTTAA+TGG + chr8_1:91154882-91154901 Msa1225700:CDS 50.0%
ATCCCACCAACCAAGACAAC+TGG - chr8_1:91155038-91155057 None:intergenic 50.0%
! GCTAGTTTCCTGTTGGGATG+GGG + chr8_1:91155546-91155565 Msa1225700:CDS 50.0%
TTGTGATACCCCATCCCAAC+AGG - chr8_1:91155557-91155576 None:intergenic 50.0%
! TGGGGTATCACAATTGGTGC+TGG + chr8_1:91155564-91155583 Msa1225700:CDS 50.0%
TGGTTATGACAAGCTGCAGC+TGG + chr8_1:91155770-91155789 Msa1225700:CDS 50.0%
!! AAGCTGCAGCTGGTCTTGTT+TGG + chr8_1:91155780-91155799 Msa1225700:CDS 50.0%
! GGTCTGAAAGTGCAAGGACT+TGG - chr8_1:91156003-91156022 None:intergenic 50.0%
! GGTGTTGTGTCTGAGTGTCC+CGG - chr8_1:91153159-91153178 None:intergenic 55.0%
! CGGGAGGTACGTAAACCACT+AGG - chr8_1:91153275-91153294 None:intergenic 55.0%
TGCTGTGGTGGTTCCTGTGA+TGG + chr8_1:91153486-91153505 Msa1225700:intron 55.0%
TAGGCTGCAATCATGGCCGA+TGG + chr8_1:91153752-91153771 Msa1225700:exon 55.0%
GTTAGAGTTGGCGCTAAGCC+TGG - chr8_1:91153831-91153850 None:intergenic 55.0%
GTCCCTTCTCCAGCAGAGAA+AGG + chr8_1:91153941-91153960 Msa1225700:CDS 55.0%
GGTCCTTTCTCTGCTGGAGA+AGG - chr8_1:91153947-91153966 None:intergenic 55.0%
! GGCTACTGGAAGTGGTTTGC+TGG + chr8_1:91154753-91154772 Msa1225700:CDS 55.0%
TTAGCATCTGGTGGAGCTGC+TGG + chr8_1:91154780-91154799 Msa1225700:CDS 55.0%
TAGCATCTGGTGGAGCTGCT+GGG + chr8_1:91154781-91154800 Msa1225700:CDS 55.0%
GGATTATGCCCGTACCCGTT+TGG + chr8_1:91154833-91154852 Msa1225700:CDS 55.0%
GCAAAGGCTGCAAAGAAGGG+TGG + chr8_1:91154864-91154883 Msa1225700:CDS 55.0%
CTGCAAAGAAGGGTGGTGAG+AGG + chr8_1:91154871-91154890 Msa1225700:CDS 55.0%
!! GGCATTGCTGGCCTTTATCG+TGG + chr8_1:91154942-91154961 Msa1225700:CDS 55.0%
!! TGTCTTGGTTGGTGGGATGC+AGG + chr8_1:91155040-91155059 Msa1225700:CDS 55.0%
CTCGGTTCAGATCGCGAGAG+AGG - chr8_1:91152725-91152744 None:intergenic 60.0%
CTCTCTCGCGATCTGAACCG+AGG + chr8_1:91152723-91152742 Msa1225700:five_prime_UTR 60.0%
CTGAACCGAGGCCTCTCTTC+TGG + chr8_1:91152735-91152754 Msa1225700:five_prime_UTR 60.0%
CGTACCTCCCGACTGAACTC+TGG + chr8_1:91153284-91153303 Msa1225700:intron 60.0%
CCAGCTGGTCCTTTCTCTGC+TGG - chr8_1:91153953-91153972 None:intergenic 60.0%
CCAGCAGAGAAAGGACCAGC+TGG + chr8_1:91153950-91153969 Msa1225700:CDS 60.0%
AGCATCTGGTGGAGCTGCTG+GGG + chr8_1:91154782-91154801 Msa1225700:CDS 60.0%
! TTGCGTGCTGTTGCAGGTGC+TGG + chr8_1:91155738-91155757 Msa1225700:CDS 60.0%
!! GCAGGTGCTGGTGTGCTTGC+TGG + chr8_1:91155750-91155769 Msa1225700:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 91152606 91156124 91152606 ID=Msa1225700;Name=Msa1225700
chr8_1 mRNA 91152606 91156124 91152606 ID=Msa1225700-mRNA-1;Parent=Msa1225700;Name=Msa1225700-mRNA-1;_AED=0.03;_eAED=0.03;_QI=172|1|1|1|0.75|0.4|5|256|371
chr8_1 exon 91152606 91152756 91152606 ID=Msa1225700-mRNA-1:exon:33220;Parent=Msa1225700-mRNA-1
chr8_1 exon 91153743 91154210 91153743 ID=Msa1225700-mRNA-1:exon:33221;Parent=Msa1225700-mRNA-1
chr8_1 exon 91154690 91155061 91154690 ID=Msa1225700-mRNA-1:exon:33222;Parent=Msa1225700-mRNA-1
chr8_1 exon 91155534 91155992 91155534 ID=Msa1225700-mRNA-1:exon:33223;Parent=Msa1225700-mRNA-1
chr8_1 exon 91156031 91156124 91156031 ID=Msa1225700-mRNA-1:exon:33224;Parent=Msa1225700-mRNA-1
chr8_1 five_prime_UTR 91152606 91152756 91152606 ID=Msa1225700-mRNA-1:five_prime_utr;Parent=Msa1225700-mRNA-1
chr8_1 five_prime_UTR 91153743 91153763 91153743 ID=Msa1225700-mRNA-1:five_prime_utr;Parent=Msa1225700-mRNA-1
chr8_1 CDS 91153764 91154210 91153764 ID=Msa1225700-mRNA-1:cds;Parent=Msa1225700-mRNA-1
chr8_1 CDS 91154690 91155061 91154690 ID=Msa1225700-mRNA-1:cds;Parent=Msa1225700-mRNA-1
chr8_1 CDS 91155534 91155830 91155534 ID=Msa1225700-mRNA-1:cds;Parent=Msa1225700-mRNA-1
chr8_1 three_prime_UTR 91155831 91155992 91155831 ID=Msa1225700-mRNA-1:three_prime_utr;Parent=Msa1225700-mRNA-1
chr8_1 three_prime_UTR 91156031 91156124 91156031 ID=Msa1225700-mRNA-1:three_prime_utr;Parent=Msa1225700-mRNA-1
Gene Sequence

>Msa1225700

ATGGCCGATGGACCACATCATCCATCAATTGCTCAGAAGTTAGGTGGACATTCTTATTTGGTTTCCAGGCTTAGCGCCAACTCTAACTACAGGAATTACTCTACGTCCGGTACTTTCACTAATGGAGGAGTGCAGACTTCTGGTTTGGCACTTGCGTCACCTCTGTCGTCATTTACTGTCCCTTCTCCAGCAGAGAAAGGACCAGCTGGATTTTTGATCGATTTTCTGATGGGAGGAGTGTCTGCTGCTGTGTCAAAGACAGCTGCTGCTCCTATTGAACGAATTAAATTGCTTATCCAAAACCAGGATGAAATGCTCAAAAGTGGCAGGTTATCTGAGCCATATAAGGGAATTGGTGACTGTTTTGCTCGAACCATGAAGGATGAGGGTATAATTGCTCTGTGGAGAGGCAATACTGCTAATGTTATCAGATACTTCCCTACTCAGGCTCTGAACTTTGCTTTTAAGGATTACTTCAAGAGGCTTTTCAATTTTAAAAAAGACAGAGATGGCTACTGGAAGTGGTTTGCTGGGAATTTAGCATCTGGTGGAGCTGCTGGGGCCTCCTCACTCTTATTTGTCTATTCTTTGGATTATGCCCGTACCCGTTTGGCAAATGACGCAAAGGCTGCAAAGAAGGGTGGTGAGAGGCAGTTTAATGGAATGGTTGATGTTTACAAGAAAACCTTACAGTCTGATGGCATTGCTGGCCTTTATCGTGGATTCAACATCTCGTGTGTTGGAATTATAGTGTATCGTGGTCTTTACTTTGGAATGTATGATTCTCTGAAACCAGTTGTCTTGGTTGGTGGGATGCAGGATAGTTTCTTTGCTAGTTTCCTGTTGGGATGGGGTATCACAATTGGTGCTGGTTTGGCCTCTTATCCCATTGACACTGTGCGTAGAAGAATGATGATGACTTCTGGAGAAGCTGTGAAGTATAACAGCTCTTTGCATGCATTCCAAACCATCGTTGCAAAAGAGGGTACTAAGTCTCTTTTCAAAGGTGCTGGTGCAAACATATTGCGTGCTGTTGCAGGTGCTGGTGTGCTTGCTGGTTATGACAAGCTGCAGCTGGTCTTGTTTGGAAAGAAATATGGTTCTGGCGGCGGCTAA

Protein sequence

>Msa1225700

MADGPHHPSIAQKLGGHSYLVSRLSANSNYRNYSTSGTFTNGGVQTSGLALASPLSSFTVPSPAEKGPAGFLIDFLMGGVSAAVSKTAAAPIERIKLLIQNQDEMLKSGRLSEPYKGIGDCFARTMKDEGIIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGMVDVYKKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGGMQDSFFASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYNSSLHAFQTIVAKEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLVLFGKKYGSGGG*