Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125120 | XP_003590763.1 | 96.712 | 669 | 22 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125120 | sp|Q9SS87|SEOB_ARATH | 31.140 | 623 | 350 | 21 | 109 | 661 | 116 | 729 | 8.62e-87 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125120 | E2FKJ5 | 96.712 | 669 | 22 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029900 | Msa0125120 | 0.846310 | 2.354059e-59 | -8.615850e-47 |
| Msa0029910 | Msa0125120 | 0.876077 | 1.858899e-68 | -8.615850e-47 |
| Msa0077120 | Msa0125120 | 0.868086 | 8.480356e-66 | -8.615850e-47 |
| Msa0077130 | Msa0125120 | 0.828911 | 6.908807e-55 | -8.615850e-47 |
| Msa0125110 | Msa0125120 | 0.880302 | 6.138034e-70 | -8.615850e-47 |
| Msa0125120 | Msa0169920 | 0.869924 | 2.150111e-66 | -8.615850e-47 |
| Msa0125120 | Msa0170090 | 0.848419 | 6.205408e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125120 | MtrunA17_Chr1g0186851 | 96.712 | 669 | 22 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1332 |
| Msa0125120 | MtrunA17_Chr1g0186861 | 82.982 | 664 | 111 | 1 | 1 | 662 | 1 | 664 | 0.0 | 1139 |
| Msa0125120 | MtrunA17_Chr1g0187041 | 77.061 | 667 | 151 | 1 | 1 | 665 | 1 | 667 | 0.0 | 1035 |
| Msa0125120 | MtrunA17_Chr1g0186911 | 84.520 | 562 | 87 | 0 | 101 | 662 | 1 | 562 | 0.0 | 982 |
| Msa0125120 | MtrunA17_Chr1g0186841 | 58.832 | 668 | 267 | 6 | 5 | 669 | 9 | 671 | 0.0 | 806 |
| Msa0125120 | MtrunA17_Chr1g0165791 | 35.682 | 667 | 405 | 10 | 20 | 668 | 25 | 685 | 8.83e-147 | 443 |
| Msa0125120 | MtrunA17_Chr7g0226571 | 34.006 | 694 | 399 | 19 | 24 | 663 | 25 | 713 | 1.06e-112 | 355 |
| Msa0125120 | MtrunA17_Chr1g0187001 | 31.343 | 670 | 396 | 16 | 20 | 665 | 11 | 640 | 5.81e-102 | 325 |
| Msa0125120 | MtrunA17_Chr1g0186991 | 30.999 | 671 | 404 | 17 | 20 | 663 | 31 | 669 | 9.51e-99 | 317 |
| Msa0125120 | MtrunA17_Chr8g0381301 | 30.912 | 702 | 425 | 22 | 13 | 660 | 8 | 703 | 1.98e-97 | 314 |
| Msa0125120 | MtrunA17_Chr3g0116601 | 31.241 | 685 | 416 | 19 | 23 | 659 | 27 | 704 | 4.12e-97 | 313 |
| Msa0125120 | MtrunA17_Chr1g0186981 | 30.104 | 671 | 409 | 14 | 20 | 666 | 34 | 668 | 1.35e-92 | 301 |
| Msa0125120 | MtrunA17_Chr1g0186901 | 76.699 | 103 | 22 | 1 | 1 | 101 | 1 | 103 | 1.09e-45 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125120 | AT3G01680.1 | 31.140 | 623 | 350 | 21 | 109 | 661 | 116 | 729 | 8.76e-88 | 290 |
| Msa0125120 | AT3G01670.2 | 25.743 | 707 | 436 | 23 | 22 | 659 | 158 | 844 | 3.77e-56 | 205 |
| Msa0125120 | AT3G01670.1 | 25.743 | 707 | 436 | 23 | 22 | 659 | 134 | 820 | 4.34e-56 | 205 |
| Msa0125120 | AT1G67790.1 | 23.810 | 609 | 394 | 19 | 96 | 657 | 79 | 664 | 2.61e-38 | 151 |
Find 155 sgRNAs with CRISPR-Local
Find 436 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGAGTATGGAGATTTC+TGG | 0.121043 | 1_3:+53450183 | Msa0125120:CDS |
| TTCTTTATATGATCATAAAT+TGG | 0.139133 | 1_3:-53451193 | None:intergenic |
| GGAAATTATGGAAGTGTTTA+AGG | 0.152492 | 1_3:+53450924 | Msa0125120:CDS |
| AAAACATCGCAATGAAATTT+TGG | 0.167607 | 1_3:+53450298 | Msa0125120:CDS |
| CATCACTTTGCACCAATTAA+AGG | 0.184310 | 1_3:+53451325 | Msa0125120:CDS |
| CATTGATTCTTCTTTGGATT+TGG | 0.201689 | 1_3:-53451482 | None:intergenic |
| AATTCCCAGTTGATGTATAT+TGG | 0.204655 | 1_3:+53450438 | Msa0125120:CDS |
| ACATTGATATAAAGATTAAA+TGG | 0.204759 | 1_3:+53451542 | Msa0125120:CDS |
| GAAAAGTCTGTCATCATTTA+TGG | 0.229545 | 1_3:+53451687 | Msa0125120:CDS |
| TTGTGTCATTGATTCTTCTT+TGG | 0.239627 | 1_3:-53451488 | None:intergenic |
| AGGCAGAATTTATCTCATTT+TGG | 0.249523 | 1_3:+53450674 | Msa0125120:CDS |
| CTTGATTATGCCTAATGATT+TGG | 0.255438 | 1_3:-53450240 | None:intergenic |
| AAAATGTGGTTAACAACTTT+TGG | 0.257658 | 1_3:+53451829 | Msa0125120:CDS |
| TCAAACCCCGACGGAAATTA+TGG | 0.258203 | 1_3:+53450912 | Msa0125120:CDS |
| CCATCATAGATGGGAGCTTT+TGG | 0.260268 | 1_3:-53450970 | None:intergenic |
| AAAATTACTCTTGTGGGTTA+TGG | 0.290813 | 1_3:-53445826 | None:intergenic |
| TCAAAATTGAGATGTCTTCT+TGG | 0.293163 | 1_3:-53451168 | None:intergenic |
| CATTTCATATGATTCAAGTT+TGG | 0.299165 | 1_3:+53451437 | Msa0125120:CDS |
| ATTTCATATGATTCAAGTTT+GGG | 0.310498 | 1_3:+53451438 | Msa0125120:CDS |
| TCCAGCTCTTGCACCAGCTT+TGG | 0.314260 | 1_3:+53450412 | Msa0125120:CDS |
| GCTCATCAGACATGGTTAAA+TGG | 0.320274 | 1_3:-53445935 | None:intergenic |
| ATTCCCAGTTGATGTATATT+GGG | 0.322317 | 1_3:+53450439 | Msa0125120:CDS |
| TAGCTCGCTTCACTGGTCTT+TGG | 0.325828 | 1_3:+53452251 | Msa0125120:exon |
| ATGTACTTGATGCCTTTAAT+TGG | 0.326187 | 1_3:-53451337 | None:intergenic |
| CTTGAGATTCCTAATGTTGC+TGG | 0.329358 | 1_3:+53452125 | Msa0125120:CDS |
| GTTGAGACTCCAAGCAAAAT+AGG | 0.343180 | 1_3:-53451803 | None:intergenic |
| CATGTCTGATGAGCACATTT+TGG | 0.345477 | 1_3:+53445944 | Msa0125120:CDS |
| TCTGGACACTCAATAAAATC+TGG | 0.357793 | 1_3:-53452155 | None:intergenic |
| ATAACCCAATATACATCAAC+TGG | 0.359445 | 1_3:-53450443 | None:intergenic |
| AAAACCTGTCAAACTATTCA+TGG | 0.362097 | 1_3:+53450126 | Msa0125120:CDS |
| TCACGAATGCAACTAGAATA+AGG | 0.363652 | 1_3:+53452424 | Msa0125120:three_prime_UTR |
| ATTCAAGTTTGGGGAGTAAA+GGG | 0.363993 | 1_3:+53451448 | Msa0125120:CDS |
| ACTCATGGCTACATTGCTTA+AGG | 0.368571 | 1_3:-53452374 | None:intergenic |
| TCTTCTTTGGATTTGGAGTA+AGG | 0.371960 | 1_3:-53451475 | None:intergenic |
| GGACTCAACACAACAAATAA+AGG | 0.374169 | 1_3:-53451388 | None:intergenic |
| TCTTTATATGATCATAAATT+GGG | 0.380456 | 1_3:-53451192 | None:intergenic |
| TCCATTGTGCGGTGACAATC+TGG | 0.382744 | 1_3:-53452173 | None:intergenic |
| TTTAGTCGAACCATCATAGA+TGG | 0.384861 | 1_3:-53450980 | None:intergenic |
| ATTTAAGTTATCTGTCCTTA+AGG | 0.386138 | 1_3:+53452491 | Msa0125120:three_prime_UTR |
| CATTGGCCTTATCCCCGTTA+TGG | 0.387522 | 1_3:-53452220 | None:intergenic |
| GCTACAAGTGTTGCCATAAC+GGG | 0.388699 | 1_3:+53452207 | Msa0125120:CDS |
| TATGATCATATAAAGAAAAC+TGG | 0.388913 | 1_3:+53451199 | Msa0125120:CDS |
| CAGACATGGTTAAATGGTTA+TGG | 0.390652 | 1_3:-53445929 | None:intergenic |
| TGCACTAAAATTACTCTTGT+GGG | 0.397684 | 1_3:-53445832 | None:intergenic |
| AAAGATGTCGTAATCAATAA+AGG | 0.401969 | 1_3:+53452038 | Msa0125120:CDS |
| CATCAAATTTAGTGTCACTA+TGG | 0.409076 | 1_3:-53445989 | None:intergenic |
| GCTTCACTGGTCTTTGGCAT+TGG | 0.411853 | 1_3:+53452257 | Msa0125120:three_prime_UTR |
| CTCATGGCTACATTGCTTAA+GGG | 0.430820 | 1_3:-53452373 | None:intergenic |
| ATTGTGACTTCCGTTGGTCA+TGG | 0.436478 | 1_3:+53451975 | Msa0125120:CDS |
| TAAAGGCATCAAGTACATAA+AGG | 0.437070 | 1_3:+53451342 | Msa0125120:CDS |
| GAACCACTTGCCAAATCATT+AGG | 0.438307 | 1_3:+53450230 | Msa0125120:CDS |
| TGGCAAGTGGTTCTGTTGGT+TGG | 0.443588 | 1_3:-53450220 | None:intergenic |
| AACAAACACTGTTACACAAC+AGG | 0.447051 | 1_3:+53451893 | Msa0125120:CDS |
| GATTCAAGTTTGGGGAGTAA+AGG | 0.451419 | 1_3:+53451447 | Msa0125120:CDS |
| GTTCTTGTTCATTTCAACTC+TGG | 0.451654 | 1_3:+53451138 | Msa0125120:CDS |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1_3:-53451247 | None:intergenic |
| CTTTCATACAAGAATGAGAC+AGG | 0.456026 | 1_3:+53451927 | Msa0125120:CDS |
| CTTTGAAGTCAAAGATGCCT+TGG | 0.456421 | 1_3:+53451293 | Msa0125120:CDS |
| TAATCGCAGCATCATTTGCT+AGG | 0.456532 | 1_3:-53451758 | None:intergenic |
| CAACATGGGTTGAACGTGTA+AGG | 0.459385 | 1_3:-53446043 | None:intergenic |
| GTGTTGCCATAACGGGGATA+AGG | 0.463958 | 1_3:+53452214 | Msa0125120:CDS |
| TCCAAAGCTGGTGCAAGAGC+TGG | 0.468376 | 1_3:-53450413 | None:intergenic |
| TCAGGGACATCAAGGAGGTC+TGG | 0.469377 | 1_3:+53448115 | Msa0125120:intron |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1_3:+53450137 | Msa0125120:CDS |
| TATAATTATCAGGGACATCA+AGG | 0.473246 | 1_3:+53448107 | Msa0125120:intron |
| CATTGAAATCATCATTGAGT+TGG | 0.474539 | 1_3:+53450355 | Msa0125120:CDS |
| GGAGCTCAAGAATTTGATCA+AGG | 0.477807 | 1_3:+53450319 | Msa0125120:CDS |
| CAACCCATGAATAGTTTGAC+AGG | 0.478125 | 1_3:-53450130 | None:intergenic |
| CATTGATATAAAGATTAAAT+GGG | 0.479358 | 1_3:+53451543 | Msa0125120:CDS |
| GGAAGTCACAATAGACCCTT+TGG | 0.480483 | 1_3:-53451964 | None:intergenic |
| TTGTAAGCTATTTCCTCACC+TGG | 0.482226 | 1_3:-53450083 | None:intergenic |
| TTATATCAATGTCAGCCAGC+AGG | 0.486824 | 1_3:-53451531 | None:intergenic |
| AGCTACAAGTGTTGCCATAA+CGG | 0.487080 | 1_3:+53452206 | Msa0125120:CDS |
| TTGTGACTTCCGTTGGTCAT+GGG | 0.487496 | 1_3:+53451976 | Msa0125120:CDS |
| CAGTGGCGGAGTTTGACAAA+TGG | 0.489513 | 1_3:+53452015 | Msa0125120:CDS |
| AGAATTTGATCAAGGCAACT+TGG | 0.494238 | 1_3:+53450327 | Msa0125120:CDS |
| TCACAATGCACTATACAGAT+TGG | 0.496814 | 1_3:+53450740 | Msa0125120:CDS |
| CTGGTGGATTAATGTTATCC+AGG | 0.508936 | 1_3:-53448142 | None:intergenic |
| CTGGACACTCAATAAAATCT+GGG | 0.511801 | 1_3:-53452154 | None:intergenic |
| ACACTTCCATAATTTCCGTC+GGG | 0.516308 | 1_3:-53450918 | None:intergenic |
| CCAAAAGCTCCCATCTATGA+TGG | 0.519285 | 1_3:+53450970 | Msa0125120:CDS |
| CAGAGTATAACAAGTTACTC+AGG | 0.520550 | 1_3:+53450881 | Msa0125120:CDS |
| ACTGGGAATTGTTCCAAAGC+TGG | 0.521352 | 1_3:-53450425 | None:intergenic |
| GTGCACTAAAATTACTCTTG+TGG | 0.523282 | 1_3:-53445833 | None:intergenic |
| TCAAGGAGGTCTGGACCACC+TGG | 0.524704 | 1_3:+53448124 | Msa0125120:CDS |
| CAATGACACAAGAATTAATG+TGG | 0.525892 | 1_3:+53451500 | Msa0125120:CDS |
| CAACAATTCACTAAGTATGC+TGG | 0.528512 | 1_3:+53451732 | Msa0125120:CDS |
| ATCATTCCATTCCTCCACAA+TGG | 0.531780 | 1_3:-53451248 | None:intergenic |
| AATGTGGGTTGATTCCCTGC+TGG | 0.532892 | 1_3:+53451516 | Msa0125120:CDS |
| TGAGCATTAGCTCGCTTCAC+TGG | 0.535743 | 1_3:+53452244 | Msa0125120:exon |
| ATGCCTAATGATTTGGCAAG+TGG | 0.539047 | 1_3:-53450233 | None:intergenic |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.544476 | 1_3:-53450224 | None:intergenic |
| CAGATGTCATGCAAGGCACC+AGG | 0.546738 | 1_3:+53450065 | Msa0125120:intron |
| ATGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1_3:+53451706 | Msa0125120:CDS |
| AGCGGTGAAGTGAAGCTAGC+TGG | 0.549501 | 1_3:-53448161 | None:intergenic |
| CATTTATGGAGGTAAAGATA+AGG | 0.555548 | 1_3:+53451701 | Msa0125120:CDS |
| AACACTTCCATAATTTCCGT+CGG | 0.557817 | 1_3:-53450919 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1_3:+53450708 | Msa0125120:CDS |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1_3:+53451242 | Msa0125120:CDS |
| CTTCTTTGGATTTGGAGTAA+GGG | 0.567493 | 1_3:-53451474 | None:intergenic |
| TATATCAATGTCAGCCAGCA+GGG | 0.567784 | 1_3:-53451530 | None:intergenic |
| CAACGATAATGCAAGACTCA+TGG | 0.568326 | 1_3:-53452389 | None:intergenic |
| AATCGCAGCATCATTTGCTA+GGG | 0.571745 | 1_3:-53451757 | None:intergenic |
| GGGTCTATTGTGACTTCCGT+TGG | 0.572144 | 1_3:+53451969 | Msa0125120:CDS |
| AAAATGCAATAATTAAACAT+AGG | 0.573094 | 1_3:-53452292 | None:intergenic |
| AAACCTGTCAAACTATTCAT+GGG | 0.575469 | 1_3:+53450127 | Msa0125120:CDS |
| CAAAATGTGCTCATCAGACA+TGG | 0.576873 | 1_3:-53445943 | None:intergenic |
| GCTTCAGGCTTCGAAAGTTG+AGG | 0.577864 | 1_3:-53450269 | None:intergenic |
| TGTGAATAAGTGATCGCACT+AGG | 0.578637 | 1_3:-53445884 | None:intergenic |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1_3:-53451225 | None:intergenic |
| AGCGAGCTAATGCTCACCAT+TGG | 0.581978 | 1_3:-53452237 | None:intergenic |
| CAGCAACATTAGGAATCTCA+AGG | 0.582036 | 1_3:-53452124 | None:intergenic |
| TGATGGTTCGACTAAAACAC+TGG | 0.587238 | 1_3:+53450987 | Msa0125120:CDS |
| TTAGTCGAACCATCATAGAT+GGG | 0.591512 | 1_3:-53450979 | None:intergenic |
| GCCAGAAATCTCCATACTCA+AGG | 0.592198 | 1_3:-53450184 | None:intergenic |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1_3:+53451234 | Msa0125120:CDS |
| TGATGCAGAATCTTTCCTTG+TGG | 0.595507 | 1_3:-53451409 | None:intergenic |
| GAAGCCAACACAAGATTGTG+TGG | 0.598027 | 1_3:+53451221 | Msa0125120:CDS |
| GTCATGCAAGGCACCAGGTG+AGG | 0.600067 | 1_3:+53450070 | Msa0125120:CDS |
| TTTGTTGTGTTGAGTCCACA+AGG | 0.600641 | 1_3:+53451394 | Msa0125120:CDS |
| AACTGTAGTCCCATGACCAA+CGG | 0.603887 | 1_3:-53451985 | None:intergenic |
| GTGCGATCACTTATTCACAT+TGG | 0.606075 | 1_3:+53445888 | Msa0125120:CDS |
| CAACTCGCGTCATGACATCA+AGG | 0.608552 | 1_3:+53450385 | Msa0125120:CDS |
| CTGAGCAACAATTACAACAA+TGG | 0.612286 | 1_3:-53450471 | None:intergenic |
| GGGTGGGCAATAGTAACCAA+AGG | 0.614194 | 1_3:+53451948 | Msa0125120:CDS |
| GCAGAACGTTATCAACAACA+TGG | 0.615403 | 1_3:-53446058 | None:intergenic |
| GGTGGGCAATAGTAACCAAA+GGG | 0.619282 | 1_3:+53451949 | Msa0125120:CDS |
| CACTTCCATAATTTCCGTCG+GGG | 0.623012 | 1_3:-53450917 | None:intergenic |
| AATGACACAAGAATTAATGT+GGG | 0.631951 | 1_3:+53451501 | Msa0125120:CDS |
| TTTGAAGCAAATTAACTCTG+AGG | 0.632146 | 1_3:+53448190 | Msa0125120:CDS |
| TTTCATATGATTCAAGTTTG+GGG | 0.635444 | 1_3:+53451439 | Msa0125120:CDS |
| CCAGAAATCTCCATACTCAA+GGG | 0.637724 | 1_3:-53450183 | None:intergenic |
| TCCAGATTGTCACCGCACAA+TGG | 0.640478 | 1_3:+53452172 | Msa0125120:CDS |
| GGAGTCTCAACAGCAAAATG+TGG | 0.649917 | 1_3:+53451815 | Msa0125120:CDS |
| CATAACGGGGATAAGGCCAA+TGG | 0.650308 | 1_3:+53452221 | Msa0125120:CDS |
| AGGCATCAAGTACATAAAGG+AGG | 0.656067 | 1_3:+53451345 | Msa0125120:CDS |
| AAGTCTGTCATCATTTATGG+AGG | 0.656284 | 1_3:+53451690 | Msa0125120:CDS |
| GTGGATTAATGTTATCCAGG+TGG | 0.656925 | 1_3:-53448139 | None:intergenic |
| AGGATGGCAGATGTCATGCA+AGG | 0.660192 | 1_3:+53450058 | Msa0125120:intron |
| ATTTAGAGAACATCATCACA+AGG | 0.662401 | 1_3:+53452073 | Msa0125120:CDS |
| AAGTGATGCAAAACATACCA+AGG | 0.663117 | 1_3:-53451310 | None:intergenic |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1_3:-53450442 | None:intergenic |
| ATACAAGAATGAGACAGGGT+GGG | 0.667580 | 1_3:+53451932 | Msa0125120:CDS |
| CTACAAGTGTTGCCATAACG+GGG | 0.668595 | 1_3:+53452208 | Msa0125120:CDS |
| AAGCCAACACAAGATTGTGT+GGG | 0.670390 | 1_3:+53451222 | Msa0125120:CDS |
| TAATGAACACTTCCATTGTG+CGG | 0.679237 | 1_3:-53452184 | None:intergenic |
| AAGGTGAGAGCAAATATGAA+CGG | 0.680495 | 1_3:-53452105 | None:intergenic |
| CAGAACGTTATCAACAACAT+GGG | 0.681953 | 1_3:-53446057 | None:intergenic |
| CATACAAGAATGAGACAGGG+TGG | 0.684075 | 1_3:+53451931 | Msa0125120:CDS |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1_3:+53451237 | Msa0125120:CDS |
| GAAGCTCTTTCAAACCCCGA+CGG | 0.688404 | 1_3:+53450903 | Msa0125120:CDS |
| GGTGAAGTGAAGCTAGCTGG+TGG | 0.705282 | 1_3:-53448158 | None:intergenic |
| AATTATCAGGGACATCAAGG+AGG | 0.721162 | 1_3:+53448110 | Msa0125120:intron |
| TTTCATACAAGAATGAGACA+GGG | 0.731641 | 1_3:+53451928 | Msa0125120:CDS |
| ATTTGCTTCAAAGTACACAG+CGG | 0.765745 | 1_3:-53448179 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATAATTTTATTTTAAA+TGG | - | chr1_3:53449655-53449674 | None:intergenic | 0.0% |
| !!! | AGTTTAAAATCATAAAAATA+AGG | + | chr1_3:53446902-53446921 | Msa0125120:intron | 10.0% |
| !!! | AATTTTTACGATATTTTTTT+CGG | - | chr1_3:53449007-53449026 | None:intergenic | 10.0% |
| !! | TTAAAAAATTTAAGAGTTTA+AGG | + | chr1_3:53449141-53449160 | Msa0125120:intron | 10.0% |
| !!! | TTATAAGTAATTTTTTTTGT+AGG | + | chr1_3:53449200-53449219 | Msa0125120:intron | 10.0% |
| !!! | TATAAGTAATTTTTTTTGTA+GGG | + | chr1_3:53449201-53449220 | Msa0125120:intron | 10.0% |
| !!! | TTCAATTTTTTTTAAAAACA+TGG | - | chr1_3:53449808-53449827 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAAAATTGAAGAA+AGG | + | chr1_3:53449811-53449830 | Msa0125120:intron | 10.0% |
| !! | TAATACATTTATATTGTATA+AGG | + | chr1_3:53450038-53450057 | Msa0125120:intron | 10.0% |
| !!! | ATATGTTTTTATAATTAAAC+AGG | + | chr1_3:53451084-53451103 | Msa0125120:intron | 10.0% |
| !! | AGTTATTTGTCTTTAATTAT+AGG | - | chr1_3:53448083-53448102 | None:intergenic | 15.0% |
| !!! | ATAACTTGTTTATAATTATC+AGG | + | chr1_3:53448097-53448116 | Msa0125120:intron | 15.0% |
| !!! | TAACTTGTTTATAATTATCA+GGG | + | chr1_3:53448098-53448117 | Msa0125120:intron | 15.0% |
| !!! | TTGTTTCTTATTTTAATTGT+GGG | - | chr1_3:53448396-53448415 | None:intergenic | 15.0% |
| !!! | TTTGTTTCTTATTTTAATTG+TGG | - | chr1_3:53448397-53448416 | None:intergenic | 15.0% |
| !! | ATATGTCATTGATAAAAAAA+AGG | - | chr1_3:53448500-53448519 | None:intergenic | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | - | chr1_3:53449230-53449249 | None:intergenic | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | - | chr1_3:53448923-53448942 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | - | chr1_3:53449042-53449061 | None:intergenic | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | + | chr1_3:53449230-53449249 | Msa0125120:intron | 15.0% |
| !!! | TTTCATGAATTTGTTTAATA+TGG | - | chr1_3:53449903-53449922 | None:intergenic | 15.0% |
| !! | ATATTAAACAAATTCATGAA+AGG | + | chr1_3:53449902-53449921 | Msa0125120:intron | 15.0% |
| !! | TAAATAATTTCCATCAATAT+GGG | - | chr1_3:53450846-53450865 | None:intergenic | 15.0% |
| !! | TTAAATAATTTCCATCAATA+TGG | - | chr1_3:53450847-53450866 | None:intergenic | 15.0% |
| !!! | ATATCTTAATTTAGTTTCAT+TGG | + | chr1_3:53451022-53451041 | Msa0125120:intron | 15.0% |
| !! | TCTTTATATGATCATAAATT+GGG | - | chr1_3:53451195-53451214 | None:intergenic | 15.0% |
| !! | TTCTTTATATGATCATAAAT+TGG | - | chr1_3:53451196-53451215 | None:intergenic | 15.0% |
| !! | ACATTGATATAAAGATTAAA+TGG | + | chr1_3:53451542-53451561 | Msa0125120:CDS | 15.0% |
| !! | CATTGATATAAAGATTAAAT+GGG | + | chr1_3:53451543-53451562 | Msa0125120:CDS | 15.0% |
| !! | AAAATGCAATAATTAAACAT+AGG | - | chr1_3:53452295-53452314 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTCTGAATCAATA+TGG | + | chr1_3:53445857-53445876 | Msa0125120:exon | 20.0% |
| !!! | ACTATTTTTTTTTACATAGC+AGG | + | chr1_3:53446356-53446375 | Msa0125120:intron | 20.0% |
| !! | TTGTGTAAACTTTATTGTTA+GGG | - | chr1_3:53446806-53446825 | None:intergenic | 20.0% |
| !! | ATTGTGTAAACTTTATTGTT+AGG | - | chr1_3:53446807-53446826 | None:intergenic | 20.0% |
| !! | ACATAAATTCAATATCAACA+AGG | + | chr1_3:53446829-53446848 | Msa0125120:intron | 20.0% |
| !! | TGAAATTACTAAAACAATTG+TGG | + | chr1_3:53447234-53447253 | Msa0125120:intron | 20.0% |
| !! | GAAATTACTAAAACAATTGT+GGG | + | chr1_3:53447235-53447254 | Msa0125120:intron | 20.0% |
| !!! | CTACTATTTTCAAATTTCTT+TGG | - | chr1_3:53448640-53448659 | None:intergenic | 20.0% |
| !! | AAGAAATTTGAAAATAGTAG+TGG | + | chr1_3:53448640-53448659 | Msa0125120:intron | 20.0% |
| !!! | GATACAAAAAAGTATGTAAT+GGG | - | chr1_3:53448685-53448704 | None:intergenic | 20.0% |
| !!! | AGATACAAAAAAGTATGTAA+TGG | - | chr1_3:53448686-53448705 | None:intergenic | 20.0% |
| !! | CTTCATTTACTAAAAGTAAA+TGG | - | chr1_3:53448731-53448750 | None:intergenic | 20.0% |
| !!! | TTTACTTTTAGTAAATGAAG+AGG | + | chr1_3:53448731-53448750 | Msa0125120:intron | 20.0% |
| !! | TTGAAATTAAGGAGTTAAAA+GGG | - | chr1_3:53448777-53448796 | None:intergenic | 20.0% |
| !!! | TTTTAACTCCTTAATTTCAA+GGG | + | chr1_3:53448777-53448796 | Msa0125120:intron | 20.0% |
| !! | ATATTTAACCCTTGAAATTA+AGG | - | chr1_3:53448788-53448807 | None:intergenic | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr1_3:53448953-53448972 | Msa0125120:intron | 20.0% |
| !!! | TAAACAAAATTTGTTTTAGC+AGG | + | chr1_3:53449169-53449188 | Msa0125120:intron | 20.0% |
| !!! | AAACAAAATTTGTTTTAGCA+GGG | + | chr1_3:53449170-53449189 | Msa0125120:intron | 20.0% |
| !! | AAAAAAGAACAACTTTGTAT+TGG | + | chr1_3:53449365-53449384 | Msa0125120:intron | 20.0% |
| !!! | TTTTTCTTTGTTTCAATTGT+GGG | - | chr1_3:53449530-53449549 | None:intergenic | 20.0% |
| !! | TTTAGACTTCTAAATATGTT+GGG | - | chr1_3:53449614-53449633 | None:intergenic | 20.0% |
| !!! | TTTTAGACTTCTAAATATGT+TGG | - | chr1_3:53449615-53449634 | None:intergenic | 20.0% |
| !!! | TAAACTATAAAGTTTTCAGA+AGG | - | chr1_3:53450011-53450030 | None:intergenic | 20.0% |
| !! | ACATTTATATTGTATAAGGA+TGG | + | chr1_3:53450042-53450061 | Msa0125120:intron | 20.0% |
| !! | ACTTGATTATAAACAAAACA+AGG | - | chr1_3:53450576-53450595 | None:intergenic | 20.0% |
| !!! | AGTTACAATTTTTTTTTTCC+AGG | + | chr1_3:53450645-53450664 | Msa0125120:intron | 20.0% |
| !!! | GTTACAATTTTTTTTTTCCA+GGG | + | chr1_3:53450646-53450665 | Msa0125120:intron | 20.0% |
| !!! | TGTTTAAGGTTTTAATTTTC+TGG | + | chr1_3:53450938-53450957 | Msa0125120:CDS | 20.0% |
| !! | TTTATGTTTAAGTATGTACA+AGG | + | chr1_3:53451046-53451065 | Msa0125120:intron | 20.0% |
| !! | TATGATCATATAAAGAAAAC+TGG | + | chr1_3:53451199-53451218 | Msa0125120:CDS | 20.0% |
| !!! | ATTTCATATGATTCAAGTTT+GGG | + | chr1_3:53451438-53451457 | Msa0125120:CDS | 20.0% |
| !! | TTGTAATTTCATGTTATCTT+TGG | + | chr1_3:53451649-53451668 | Msa0125120:intron | 20.0% |
| !!! | TTTCTTGTTAGTTTTCTTTA+TGG | + | chr1_3:53452312-53452331 | Msa0125120:three_prime_UTR | 20.0% |
| !!! | AATCTTTTTTCAACATTGCT+GGG | + | chr1_3:53446015-53446034 | Msa0125120:CDS | 25.0% |
| ! | CACAAATAAACACCTATAAT+AGG | + | chr1_3:53446425-53446444 | Msa0125120:intron | 25.0% |
| !! | AGGCAAATAAACATCTATTT+TGG | + | chr1_3:53446492-53446511 | Msa0125120:intron | 25.0% |
| ! | CATGAGTACATAAAAATCAT+AGG | + | chr1_3:53446673-53446692 | Msa0125120:intron | 25.0% |
| !!! | GGAAGTTTTATTTTGTAAGA+AGG | + | chr1_3:53447009-53447028 | Msa0125120:intron | 25.0% |
| !!! | TTTATTTTGTAAGAAGGATG+TGG | + | chr1_3:53447015-53447034 | Msa0125120:intron | 25.0% |
| ! | AAAAATAGCAAAATTTGTGC+AGG | + | chr1_3:53447296-53447315 | Msa0125120:intron | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | + | chr1_3:53447735-53447754 | Msa0125120:intron | 25.0% |
| !! | TTTTCGAATGATTTCTCTAA+TGG | - | chr1_3:53447870-53447889 | None:intergenic | 25.0% |
| ! | AATCATTCGAAAAAGTTTAG+AGG | + | chr1_3:53447877-53447896 | Msa0125120:intron | 25.0% |
| !! | CAATAAGTTGGATCTAAATA+TGG | + | chr1_3:53447901-53447920 | Msa0125120:intron | 25.0% |
| !! | CCAACTTTTAATATATCTCT+CGG | + | chr1_3:53448037-53448056 | Msa0125120:intron | 25.0% |
| ! | CTTGAAATTAAGGAGTTAAA+AGG | - | chr1_3:53448778-53448797 | None:intergenic | 25.0% |
| !!! | CTTTTAACTCCTTAATTTCA+AGG | + | chr1_3:53448776-53448795 | Msa0125120:intron | 25.0% |
| !! | TCAAGGGTTAAATATGTTTT+TGG | + | chr1_3:53448793-53448812 | Msa0125120:intron | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | - | chr1_3:53448912-53448931 | None:intergenic | 25.0% |
| !!! | TTTTACGATATTTTTTTCGG+AGG | - | chr1_3:53449004-53449023 | None:intergenic | 25.0% |
| ! | TATAAAATTGCAACCTTCTA+AGG | - | chr1_3:53449261-53449280 | None:intergenic | 25.0% |
| !! | TTAGAAGGTTGCAATTTTAT+AGG | + | chr1_3:53449260-53449279 | Msa0125120:intron | 25.0% |
| !! | TAGAAGGTTGCAATTTTATA+GGG | + | chr1_3:53449261-53449280 | Msa0125120:intron | 25.0% |
| !!! | TTTTTTAACATGTACCCTTA+GGG | - | chr1_3:53449342-53449361 | None:intergenic | 25.0% |
| !!! | TTTTTTTAACATGTACCCTT+AGG | - | chr1_3:53449343-53449362 | None:intergenic | 25.0% |
| !!! | GTTTTTCTTTGTTTCAATTG+TGG | - | chr1_3:53449531-53449550 | None:intergenic | 25.0% |
| !!! | ATAAAGTTTTGATGAGTTCA+AGG | + | chr1_3:53449701-53449720 | Msa0125120:intron | 25.0% |
| ! | TTCAATGAAGATCTTTCTTA+AGG | + | chr1_3:53449933-53449952 | Msa0125120:intron | 25.0% |
| ! | TCAATGAAGATCTTTCTTAA+GGG | + | chr1_3:53449934-53449953 | Msa0125120:intron | 25.0% |
| !! | AAGTTTTCAGAAGGATTTTT+TGG | - | chr1_3:53450002-53450021 | None:intergenic | 25.0% |
| !!! | AATAGTTTGACAGGTTTTTT+AGG | - | chr1_3:53450124-53450143 | None:intergenic | 25.0% |
| !! | AAAACATCGCAATGAAATTT+TGG | + | chr1_3:53450298-53450317 | Msa0125120:CDS | 25.0% |
| ! | GGAAGAAAATACTTCAATTT+GGG | - | chr1_3:53450825-53450844 | None:intergenic | 25.0% |
| !! | CATTTCATATGATTCAAGTT+TGG | + | chr1_3:53451437-53451456 | Msa0125120:CDS | 25.0% |
| !! | TTTCATATGATTCAAGTTTG+GGG | + | chr1_3:53451439-53451458 | Msa0125120:CDS | 25.0% |
| ! | AATGACACAAGAATTAATGT+GGG | + | chr1_3:53451501-53451520 | Msa0125120:CDS | 25.0% |
| ! | TTAAATGGGTACGTATAATT+CGG | + | chr1_3:53451557-53451576 | Msa0125120:intron | 25.0% |
| !! | AAAATGTGGTTAACAACTTT+TGG | + | chr1_3:53451829-53451848 | Msa0125120:CDS | 25.0% |
| ! | AAAGATGTCGTAATCAATAA+AGG | + | chr1_3:53452038-53452057 | Msa0125120:CDS | 25.0% |
| ! | AAGATTTTGTGTGTTTTGTG+TGG | - | chr1_3:53445796-53445815 | None:intergenic | 30.0% |
| ! | AAAATTACTCTTGTGGGTTA+TGG | - | chr1_3:53445829-53445848 | None:intergenic | 30.0% |
| TGCACTAAAATTACTCTTGT+GGG | - | chr1_3:53445835-53445854 | None:intergenic | 30.0% | |
| ! | CATCAAATTTAGTGTCACTA+TGG | - | chr1_3:53445992-53446011 | None:intergenic | 30.0% |
| !!! | GAATCTTTTTTCAACATTGC+TGG | + | chr1_3:53446014-53446033 | Msa0125120:CDS | 30.0% |
| TACAAACCAATTTCAGAATC+AGG | - | chr1_3:53446531-53446550 | None:intergenic | 30.0% | |
| ACTCATGAGTAGTGTTTATA+GGG | - | chr1_3:53446660-53446679 | None:intergenic | 30.0% | |
| TACTCATGAGTAGTGTTTAT+AGG | - | chr1_3:53446661-53446680 | None:intergenic | 30.0% | |
| TTCTTTCATTCTATGTCACA+AGG | - | chr1_3:53447091-53447110 | None:intergenic | 30.0% | |
| ! | CAGATTTTTGTTAGCCAATT+GGG | + | chr1_3:53447170-53447189 | Msa0125120:intron | 30.0% |
| ATTACTAAAACAATTGTGGG+TGG | + | chr1_3:53447238-53447257 | Msa0125120:intron | 30.0% | |
| TTACTAAAACAATTGTGGGT+GGG | + | chr1_3:53447239-53447258 | Msa0125120:intron | 30.0% | |
| ATATCTAAACCGTGTAACTT+GGG | - | chr1_3:53447392-53447411 | None:intergenic | 30.0% | |
| TTACACGGTTTAGATATCTT+GGG | + | chr1_3:53447395-53447414 | Msa0125120:intron | 30.0% | |
| !!! | TTCTCCGTCATTTTTTACTA+TGG | - | chr1_3:53447422-53447441 | None:intergenic | 30.0% |
| ! | TCTACCAACTTTTCTACTAT+AGG | - | chr1_3:53447731-53447750 | None:intergenic | 30.0% |
| TTGATCTACTCTTCTTACAA+CGG | - | chr1_3:53447801-53447820 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | + | chr1_3:53447802-53447821 | Msa0125120:intron | 30.0% | |
| ATTTCTCTAATGGTTCTCTT+AGG | - | chr1_3:53447860-53447879 | None:intergenic | 30.0% | |
| AAGTTTAGAGGTCAATAAGT+TGG | + | chr1_3:53447889-53447908 | Msa0125120:intron | 30.0% | |
| CCGAGAGATATATTAAAAGT+TGG | - | chr1_3:53448040-53448059 | None:intergenic | 30.0% | |
| TATAATTATCAGGGACATCA+AGG | + | chr1_3:53448107-53448126 | Msa0125120:intron | 30.0% | |
| ! | TTTGAAGCAAATTAACTCTG+AGG | + | chr1_3:53448190-53448209 | Msa0125120:CDS | 30.0% |
| !! | AAGACTAAGAGTATCTCTAA+TGG | + | chr1_3:53448301-53448320 | Msa0125120:intron | 30.0% |
| ! | ATTGTTATTAGAGAGAGCAA+GGG | - | chr1_3:53448368-53448387 | None:intergenic | 30.0% |
| ! | AATTGTTATTAGAGAGAGCA+AGG | - | chr1_3:53448369-53448388 | None:intergenic | 30.0% |
| TTGCTCTCTCTAATAACAAT+TGG | + | chr1_3:53448368-53448387 | Msa0125120:intron | 30.0% | |
| ATCTCTCCAAATAGAAGAAA+TGG | - | chr1_3:53448611-53448630 | None:intergenic | 30.0% | |
| ! | TAGAAGGTCGCAATTTTATA+GGG | - | chr1_3:53448820-53448839 | None:intergenic | 30.0% |
| ! | TTAGAAGGTCGCAATTTTAT+AGG | - | chr1_3:53448821-53448840 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTAGA+AGG | - | chr1_3:53448836-53448855 | None:intergenic | 30.0% | |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | - | chr1_3:53448880-53448899 | None:intergenic | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | - | chr1_3:53448881-53448900 | None:intergenic | 30.0% |
| ! | CAAGTTTAGAACACTATGAA+AGG | - | chr1_3:53449107-53449126 | None:intergenic | 30.0% |
| TCCTTAACTAATTGAAGCTA+GGG | - | chr1_3:53449304-53449323 | None:intergenic | 30.0% | |
| ATCCTTAACTAATTGAAGCT+AGG | - | chr1_3:53449305-53449324 | None:intergenic | 30.0% | |
| TCATATTAACTAATGCCCTA+AGG | + | chr1_3:53449324-53449343 | Msa0125120:intron | 30.0% | |
| CATATTAACTAATGCCCTAA+GGG | + | chr1_3:53449325-53449344 | Msa0125120:intron | 30.0% | |
| ! | AGAAAGGACAAAAGAGTTTT+CGG | - | chr1_3:53449499-53449518 | None:intergenic | 30.0% |
| AAACCTTATCCATGAAGATT+TGG | + | chr1_3:53449547-53449566 | Msa0125120:intron | 30.0% | |
| TAAATATGTTGGGATGATCT+TGG | - | chr1_3:53449604-53449623 | None:intergenic | 30.0% | |
| AAAACCTGTCAAACTATTCA+TGG | + | chr1_3:53450126-53450145 | Msa0125120:CDS | 30.0% | |
| AAACCTGTCAAACTATTCAT+GGG | + | chr1_3:53450127-53450146 | Msa0125120:CDS | 30.0% | |
| CTTGATTATGCCTAATGATT+TGG | - | chr1_3:53450243-53450262 | None:intergenic | 30.0% | |
| CATTGAAATCATCATTGAGT+TGG | + | chr1_3:53450355-53450374 | Msa0125120:CDS | 30.0% | |
| ! | AATTCCCAGTTGATGTATAT+TGG | + | chr1_3:53450438-53450457 | Msa0125120:CDS | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | + | chr1_3:53450439-53450458 | Msa0125120:CDS | 30.0% |
| TAACCCAATATACATCAACT+GGG | - | chr1_3:53450445-53450464 | None:intergenic | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | - | chr1_3:53450446-53450465 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTCCAGGGATAAG+AGG | + | chr1_3:53450654-53450673 | Msa0125120:intron | 30.0% |
| ! | AGGCAGAATTTATCTCATTT+TGG | + | chr1_3:53450674-53450693 | Msa0125120:CDS | 30.0% |
| ACATCATAATCAGCAAATTG+AGG | + | chr1_3:53450708-53450727 | Msa0125120:CDS | 30.0% | |
| ! | GATTATAGCTTGACACATTT+TGG | + | chr1_3:53450764-53450783 | Msa0125120:intron | 30.0% |
| GGGAAGAAAATACTTCAATT+TGG | - | chr1_3:53450826-53450845 | None:intergenic | 30.0% | |
| ! | GTATTTTCTTCCCATATTGA+TGG | + | chr1_3:53450833-53450852 | Msa0125120:intron | 30.0% |
| !! | GGAAATTATGGAAGTGTTTA+AGG | + | chr1_3:53450924-53450943 | Msa0125120:CDS | 30.0% |
| TGTTTAAGTATGTACAAGGT+TGG | + | chr1_3:53451050-53451069 | Msa0125120:intron | 30.0% | |
| TCAAAATTGAGATGTCTTCT+TGG | - | chr1_3:53451171-53451190 | None:intergenic | 30.0% | |
| ATGTACTTGATGCCTTTAAT+TGG | - | chr1_3:53451340-53451359 | None:intergenic | 30.0% | |
| !! | TAAAGGCATCAAGTACATAA+AGG | + | chr1_3:53451342-53451361 | Msa0125120:CDS | 30.0% |
| !! | CATTGATTCTTCTTTGGATT+TGG | - | chr1_3:53451485-53451504 | None:intergenic | 30.0% |
| !! | TTGTGTCATTGATTCTTCTT+TGG | - | chr1_3:53451491-53451510 | None:intergenic | 30.0% |
| CAATGACACAAGAATTAATG+TGG | + | chr1_3:53451500-53451519 | Msa0125120:CDS | 30.0% | |
| ! | TTATCTTTGGAAACTGAAGA+AGG | + | chr1_3:53451662-53451681 | Msa0125120:intron | 30.0% |
| GAAAAGTCTGTCATCATTTA+TGG | + | chr1_3:53451687-53451706 | Msa0125120:CDS | 30.0% | |
| CATTTATGGAGGTAAAGATA+AGG | + | chr1_3:53451701-53451720 | Msa0125120:CDS | 30.0% | |
| ! | TTCAATTGACCTATTTTGCT+TGG | + | chr1_3:53451794-53451813 | Msa0125120:CDS | 30.0% |
| !! | GGTTAACAACTTTTGGAAAA+AGG | + | chr1_3:53451836-53451855 | Msa0125120:CDS | 30.0% |
| TTTCATACAAGAATGAGACA+GGG | + | chr1_3:53451928-53451947 | Msa0125120:CDS | 30.0% | |
| ATTTAGAGAACATCATCACA+AGG | + | chr1_3:53452073-53452092 | Msa0125120:CDS | 30.0% | |
| GTGCACTAAAATTACTCTTG+TGG | - | chr1_3:53445836-53445855 | None:intergenic | 35.0% | |
| CAGACATGGTTAAATGGTTA+TGG | - | chr1_3:53445932-53445951 | None:intergenic | 35.0% | |
| CAGAACGTTATCAACAACAT+GGG | - | chr1_3:53446060-53446079 | None:intergenic | 35.0% | |
| !! | GCAGATGATATAGTCTTGTT+TGG | + | chr1_3:53446158-53446177 | Msa0125120:intron | 35.0% |
| TGGAATGTAACTTCAGCAAA+AGG | + | chr1_3:53446276-53446295 | Msa0125120:intron | 35.0% | |
| ATATTCCAGCGACCTATTAT+AGG | - | chr1_3:53446440-53446459 | None:intergenic | 35.0% | |
| !! | GATTGTCCTGATTCTGAAAT+TGG | + | chr1_3:53446522-53446541 | Msa0125120:intron | 35.0% |
| !!! | TTTTTTCTCTCTTCCTCCAT+TGG | - | chr1_3:53446954-53446973 | None:intergenic | 35.0% |
| AGATTAGAGACCAAGAAACA+AGG | + | chr1_3:53446982-53447001 | Msa0125120:intron | 35.0% | |
| TTGATGTTGTTGAAACAGAG+AGG | + | chr1_3:53447052-53447071 | Msa0125120:intron | 35.0% | |
| TGATGTTGTTGAAACAGAGA+GGG | + | chr1_3:53447053-53447072 | Msa0125120:intron | 35.0% | |
| ! | CTGTGATTTTGTGAACTGAT+GGG | + | chr1_3:53447120-53447139 | Msa0125120:intron | 35.0% |
| ! | TGTGATTTTGTGAACTGATG+GGG | + | chr1_3:53447121-53447140 | Msa0125120:intron | 35.0% |
| ! | GCAGATTTTTGTTAGCCAAT+TGG | + | chr1_3:53447169-53447188 | Msa0125120:intron | 35.0% |
| TACTAAAACAATTGTGGGTG+GGG | + | chr1_3:53447240-53447259 | Msa0125120:intron | 35.0% | |
| ATATCATACCCCAAGTTACA+CGG | + | chr1_3:53447380-53447399 | Msa0125120:intron | 35.0% | |
| TATCTAAACCGTGTAACTTG+GGG | - | chr1_3:53447391-53447410 | None:intergenic | 35.0% | |
| GATATCTAAACCGTGTAACT+TGG | - | chr1_3:53447393-53447412 | None:intergenic | 35.0% | |
| GTTACACGGTTTAGATATCT+TGG | + | chr1_3:53447394-53447413 | Msa0125120:intron | 35.0% | |
| GGGTCCATAGTAAAAAATGA+CGG | + | chr1_3:53447415-53447434 | Msa0125120:intron | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | + | chr1_3:53447520-53447539 | Msa0125120:intron | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | - | chr1_3:53447529-53447548 | None:intergenic | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | + | chr1_3:53447724-53447743 | Msa0125120:intron | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | + | chr1_3:53447744-53447763 | Msa0125120:intron | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | + | chr1_3:53447749-53447768 | Msa0125120:intron | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | + | chr1_3:53447805-53447824 | Msa0125120:intron | 35.0% | |
| AGAAGAGTAGATCAAATGGA+GGG | + | chr1_3:53447806-53447825 | Msa0125120:intron | 35.0% | |
| AATCAGGTTAAAAGAGGTAG+AGG | + | chr1_3:53447830-53447849 | Msa0125120:intron | 35.0% | |
| ! | TGGTTTTTGATAGAACACTC+TGG | + | chr1_3:53447921-53447940 | Msa0125120:intron | 35.0% |
| ATTTGCTTCAAAGTACACAG+CGG | - | chr1_3:53448182-53448201 | None:intergenic | 35.0% | |
| GGAGAGACTAATAAATGTAG+AGG | - | chr1_3:53448590-53448609 | None:intergenic | 35.0% | |
| GTCTCTCCATTTCTTCTATT+TGG | + | chr1_3:53448602-53448621 | Msa0125120:intron | 35.0% | |
| AAGTAAGGACTAACCTTAGA+AGG | + | chr1_3:53449245-53449264 | Msa0125120:intron | 35.0% | |
| GCTAGGGTTAAATATGTTTC+TGG | - | chr1_3:53449288-53449307 | None:intergenic | 35.0% | |
| ACCCTAGCTTCAATTAGTTA+AGG | + | chr1_3:53449300-53449319 | Msa0125120:intron | 35.0% | |
| TCCTTAACATGTGTTCATGA+AGG | + | chr1_3:53449457-53449476 | Msa0125120:intron | 35.0% | |
| CCTTAACATGTGTTCATGAA+GGG | + | chr1_3:53449458-53449477 | Msa0125120:intron | 35.0% | |
| ! | ATTGTGGGCTAATTTGAGAA+AGG | - | chr1_3:53449515-53449534 | None:intergenic | 35.0% |
| GTACCAAATCTTCATGGATA+AGG | - | chr1_3:53449553-53449572 | None:intergenic | 35.0% | |
| GAATTGGTACCAAATCTTCA+TGG | - | chr1_3:53449559-53449578 | None:intergenic | 35.0% | |
| ! | AACTATTCATGGGTTGCAAA+AGG | + | chr1_3:53450137-53450156 | Msa0125120:CDS | 35.0% |
| !!! | CGATGTTTTTTCAATGCTTC+AGG | - | chr1_3:53450287-53450306 | None:intergenic | 35.0% |
| AGAATTTGATCAAGGCAACT+TGG | + | chr1_3:53450327-53450346 | Msa0125120:CDS | 35.0% | |
| CTGAGCAACAATTACAACAA+TGG | - | chr1_3:53450474-53450493 | None:intergenic | 35.0% | |
| TCACAATGCACTATACAGAT+TGG | + | chr1_3:53450740-53450759 | Msa0125120:CDS | 35.0% | |
| CAGAGTATAACAAGTTACTC+AGG | + | chr1_3:53450881-53450900 | Msa0125120:CDS | 35.0% | |
| AACACTTCCATAATTTCCGT+CGG | - | chr1_3:53450922-53450941 | None:intergenic | 35.0% | |
| TTAGTCGAACCATCATAGAT+GGG | - | chr1_3:53450982-53451001 | None:intergenic | 35.0% | |
| TTTAGTCGAACCATCATAGA+TGG | - | chr1_3:53450983-53451002 | None:intergenic | 35.0% | |
| !! | TATCGAAGTGCTGAAAAAGA+AGG | + | chr1_3:53451111-53451130 | Msa0125120:CDS | 35.0% |
| GTTCTTGTTCATTTCAACTC+TGG | + | chr1_3:53451138-53451157 | Msa0125120:CDS | 35.0% | |
| AAGTGATGCAAAACATACCA+AGG | - | chr1_3:53451313-53451332 | None:intergenic | 35.0% | |
| CATCACTTTGCACCAATTAA+AGG | + | chr1_3:53451325-53451344 | Msa0125120:CDS | 35.0% | |
| GGACTCAACACAACAAATAA+AGG | - | chr1_3:53451391-53451410 | None:intergenic | 35.0% | |
| ! | ATTCAAGTTTGGGGAGTAAA+GGG | + | chr1_3:53451448-53451467 | Msa0125120:CDS | 35.0% |
| ! | CTTCTTTGGATTTGGAGTAA+GGG | - | chr1_3:53451477-53451496 | None:intergenic | 35.0% |
| ! | TCTTCTTTGGATTTGGAGTA+AGG | - | chr1_3:53451478-53451497 | None:intergenic | 35.0% |
| AAGTCTGTCATCATTTATGG+AGG | + | chr1_3:53451690-53451709 | Msa0125120:CDS | 35.0% | |
| ATGGAGGTAAAGATAAGGAA+TGG | + | chr1_3:53451706-53451725 | Msa0125120:CDS | 35.0% | |
| CAACAATTCACTAAGTATGC+TGG | + | chr1_3:53451732-53451751 | Msa0125120:CDS | 35.0% | |
| !! | GTTTGTTTTCTCATGCATCT+TGG | - | chr1_3:53451880-53451899 | None:intergenic | 35.0% |
| AACAAACACTGTTACACAAC+AGG | + | chr1_3:53451893-53451912 | Msa0125120:CDS | 35.0% | |
| CTTTCATACAAGAATGAGAC+AGG | + | chr1_3:53451927-53451946 | Msa0125120:CDS | 35.0% | |
| AAGGTGAGAGCAAATATGAA+CGG | - | chr1_3:53452108-53452127 | None:intergenic | 35.0% | |
| CTGGACACTCAATAAAATCT+GGG | - | chr1_3:53452157-53452176 | None:intergenic | 35.0% | |
| TCTGGACACTCAATAAAATC+TGG | - | chr1_3:53452158-53452177 | None:intergenic | 35.0% | |
| TAATGAACACTTCCATTGTG+CGG | - | chr1_3:53452187-53452206 | None:intergenic | 35.0% | |
| TCACGAATGCAACTAGAATA+AGG | + | chr1_3:53452424-53452443 | Msa0125120:three_prime_UTR | 35.0% | |
| TGTGAATAAGTGATCGCACT+AGG | - | chr1_3:53445887-53445906 | None:intergenic | 40.0% | |
| GTGCGATCACTTATTCACAT+TGG | + | chr1_3:53445888-53445907 | Msa0125120:CDS | 40.0% | |
| GCTCATCAGACATGGTTAAA+TGG | - | chr1_3:53445938-53445957 | None:intergenic | 40.0% | |
| CAAAATGTGCTCATCAGACA+TGG | - | chr1_3:53445946-53445965 | None:intergenic | 40.0% | |
| ! | CATGTCTGATGAGCACATTT+TGG | + | chr1_3:53445944-53445963 | Msa0125120:CDS | 40.0% |
| GCAGAACGTTATCAACAACA+TGG | - | chr1_3:53446061-53446080 | None:intergenic | 40.0% | |
| TAGAAGCAAGACGGAGTATA+TGG | + | chr1_3:53446256-53446275 | Msa0125120:intron | 40.0% | |
| AACTTCAGCAAAAGGAGAAG+TGG | + | chr1_3:53446284-53446303 | Msa0125120:intron | 40.0% | |
| ACTTCAGCAAAAGGAGAAGT+GGG | + | chr1_3:53446285-53446304 | Msa0125120:intron | 40.0% | |
| AAACACCTATAATAGGTCGC+TGG | + | chr1_3:53446432-53446451 | Msa0125120:intron | 40.0% | |
| ! | ACTTCCTCTTCCTTGTTTCT+TGG | - | chr1_3:53446995-53447014 | None:intergenic | 40.0% |
| TTGTAAGAAGGATGTGGATG+TGG | + | chr1_3:53447021-53447040 | Msa0125120:intron | 40.0% | |
| ! | GCTGTGATTTTGTGAACTGA+TGG | + | chr1_3:53447119-53447138 | Msa0125120:intron | 40.0% |
| ATAGCAAAATTTGTGCAGGC+AGG | + | chr1_3:53447300-53447319 | Msa0125120:intron | 40.0% | |
| GTACATCATCGTATTCAAGC+CGG | + | chr1_3:53447454-53447473 | Msa0125120:intron | 40.0% | |
| TACATCATCGTATTCAAGCC+GGG | + | chr1_3:53447455-53447474 | Msa0125120:intron | 40.0% | |
| ACTGGCAATGTTGTATGGTA+CGG | + | chr1_3:53447567-53447586 | Msa0125120:intron | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | + | chr1_3:53447662-53447681 | Msa0125120:intron | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | - | chr1_3:53447792-53447811 | None:intergenic | 40.0% | |
| GAAGAGTAGATCAAATGGAG+GGG | + | chr1_3:53447807-53447826 | Msa0125120:intron | 40.0% | |
| AATTATCAGGGACATCAAGG+AGG | + | chr1_3:53448110-53448129 | Msa0125120:intron | 40.0% | |
| ! | GTGGATTAATGTTATCCAGG+TGG | - | chr1_3:53448142-53448161 | None:intergenic | 40.0% |
| !! | CTGGTGGATTAATGTTATCC+AGG | - | chr1_3:53448145-53448164 | None:intergenic | 40.0% |
| ! | AATGGGTTCTACCACTAAGT+GGG | - | chr1_3:53448668-53448687 | None:intergenic | 40.0% |
| !! | TAATGGGTTCTACCACTAAG+TGG | - | chr1_3:53448669-53448688 | None:intergenic | 40.0% |
| CCCTTCATGAACACATGTTA+AGG | - | chr1_3:53449461-53449480 | None:intergenic | 40.0% | |
| TTAGAGCTGTAGCGAAGAAT+TGG | - | chr1_3:53449575-53449594 | None:intergenic | 40.0% | |
| ! | TTGTAAGCTATTTCCTCACC+TGG | - | chr1_3:53450086-53450105 | None:intergenic | 40.0% |
| CAACCCATGAATAGTTTGAC+AGG | - | chr1_3:53450133-53450152 | None:intergenic | 40.0% | |
| CCAGAAATCTCCATACTCAA+GGG | - | chr1_3:53450186-53450205 | None:intergenic | 40.0% | |
| GAACCACTTGCCAAATCATT+AGG | + | chr1_3:53450230-53450249 | Msa0125120:CDS | 40.0% | |
| ! | ATGCCTAATGATTTGGCAAG+TGG | - | chr1_3:53450236-53450255 | None:intergenic | 40.0% |
| GGAGCTCAAGAATTTGATCA+AGG | + | chr1_3:53450319-53450338 | Msa0125120:CDS | 40.0% | |
| !! | AGCACTGATGTGATACATCA+TGG | + | chr1_3:53450535-53450554 | Msa0125120:intron | 40.0% |
| TAAATTCTGCCTCTTATCCC+TGG | - | chr1_3:53450666-53450685 | None:intergenic | 40.0% | |
| ACACTTCCATAATTTCCGTC+GGG | - | chr1_3:53450921-53450940 | None:intergenic | 40.0% | |
| TGATGGTTCGACTAAAACAC+TGG | + | chr1_3:53450987-53451006 | Msa0125120:CDS | 40.0% | |
| AAGCCAACACAAGATTGTGT+GGG | + | chr1_3:53451222-53451241 | Msa0125120:CDS | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | - | chr1_3:53451250-53451269 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | - | chr1_3:53451251-53451270 | None:intergenic | 40.0% | |
| !! | CTTTGAAGTCAAAGATGCCT+TGG | + | chr1_3:53451293-53451312 | Msa0125120:CDS | 40.0% |
| AGGCATCAAGTACATAAAGG+AGG | + | chr1_3:53451345-53451364 | Msa0125120:CDS | 40.0% | |
| ! | TTTGTTGTGTTGAGTCCACA+AGG | + | chr1_3:53451394-53451413 | Msa0125120:CDS | 40.0% |
| TGATGCAGAATCTTTCCTTG+TGG | - | chr1_3:53451412-53451431 | None:intergenic | 40.0% | |
| ! | GATTCAAGTTTGGGGAGTAA+AGG | + | chr1_3:53451447-53451466 | Msa0125120:CDS | 40.0% |
| TATATCAATGTCAGCCAGCA+GGG | - | chr1_3:53451533-53451552 | None:intergenic | 40.0% | |
| TTATATCAATGTCAGCCAGC+AGG | - | chr1_3:53451534-53451553 | None:intergenic | 40.0% | |
| ! | TCTTTGGAAACTGAAGAAGG+AGG | + | chr1_3:53451665-53451684 | Msa0125120:intron | 40.0% |
| ! | AATCGCAGCATCATTTGCTA+GGG | - | chr1_3:53451760-53451779 | None:intergenic | 40.0% |
| TAATCGCAGCATCATTTGCT+AGG | - | chr1_3:53451761-53451780 | None:intergenic | 40.0% | |
| GTTGAGACTCCAAGCAAAAT+AGG | - | chr1_3:53451806-53451825 | None:intergenic | 40.0% | |
| ATACAAGAATGAGACAGGGT+GGG | + | chr1_3:53451932-53451951 | Msa0125120:CDS | 40.0% | |
| !!! | GACTACAGTTTTGAAGACAG+TGG | + | chr1_3:53451998-53452017 | Msa0125120:CDS | 40.0% |
| !!! | TACAGTTTTGAAGACAGTGG+CGG | + | chr1_3:53452001-53452020 | Msa0125120:CDS | 40.0% |
| CAGCAACATTAGGAATCTCA+AGG | - | chr1_3:53452127-53452146 | None:intergenic | 40.0% | |
| CTTGAGATTCCTAATGTTGC+TGG | + | chr1_3:53452125-53452144 | Msa0125120:CDS | 40.0% | |
| ! | GGGATTTTTCCAGCAACATT+AGG | - | chr1_3:53452137-53452156 | None:intergenic | 40.0% |
| ! | AGCTACAAGTGTTGCCATAA+CGG | + | chr1_3:53452206-53452225 | Msa0125120:CDS | 40.0% |
| CTCATGGCTACATTGCTTAA+GGG | - | chr1_3:53452376-53452395 | None:intergenic | 40.0% | |
| ACTCATGGCTACATTGCTTA+AGG | - | chr1_3:53452377-53452396 | None:intergenic | 40.0% | |
| CAACGATAATGCAAGACTCA+TGG | - | chr1_3:53452392-53452411 | None:intergenic | 40.0% | |
| ! | CAACATGGGTTGAACGTGTA+AGG | - | chr1_3:53446046-53446065 | None:intergenic | 45.0% |
| !! | TAGTCTTGTTTGGTGAGTCG+AGG | + | chr1_3:53446168-53446187 | Msa0125120:intron | 45.0% |
| !! | AGTCTTGTTTGGTGAGTCGA+GGG | + | chr1_3:53446169-53446188 | Msa0125120:intron | 45.0% |
| TAAACGAGAGGCTAGAGACT+TGG | + | chr1_3:53446198-53446217 | Msa0125120:intron | 45.0% | |
| GAGCCAGGAATTTCAACTAG+TGG | + | chr1_3:53446329-53446348 | Msa0125120:intron | 45.0% | |
| CCTCCACTAGTTGAAATTCC+TGG | - | chr1_3:53446335-53446354 | None:intergenic | 45.0% | |
| CCAGGAATTTCAACTAGTGG+AGG | + | chr1_3:53446332-53446351 | Msa0125120:intron | 45.0% | |
| AGGTCGCTGGAATATTTAGC+AGG | + | chr1_3:53446445-53446464 | Msa0125120:intron | 45.0% | |
| ACCTCTTAGATCACCACCAA+TGG | + | chr1_3:53446935-53446954 | Msa0125120:intron | 45.0% | |
| !! | TCCATTGGTGGTGATCTAAG+AGG | - | chr1_3:53446939-53446958 | None:intergenic | 45.0% |
| TCTTAGATCACCACCAATGG+AGG | + | chr1_3:53446938-53446957 | Msa0125120:intron | 45.0% | |
| TTTCTCTCTTCCTCCATTGG+TGG | - | chr1_3:53446951-53446970 | None:intergenic | 45.0% | |
| GAGACCAAGAAACAAGGAAG+AGG | + | chr1_3:53446988-53447007 | Msa0125120:intron | 45.0% | |
| ! | GATTTTGTGAACTGATGGGG+CGG | + | chr1_3:53447124-53447143 | Msa0125120:intron | 45.0% |
| TTTGTTAGCCAATTGGGCCT+TGG | + | chr1_3:53447176-53447195 | Msa0125120:intron | 45.0% | |
| TTGTTAGCCAATTGGGCCTT+GGG | + | chr1_3:53447177-53447196 | Msa0125120:intron | 45.0% | |
| TCTTCTCCATTTCAACCACC+CGG | - | chr1_3:53447476-53447495 | None:intergenic | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | + | chr1_3:53447481-53447500 | Msa0125120:intron | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | - | chr1_3:53447500-53447519 | None:intergenic | 45.0% | |
| GTCAGACTGGCAATGTTGTA+TGG | + | chr1_3:53447562-53447581 | Msa0125120:intron | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | + | chr1_3:53447575-53447594 | Msa0125120:intron | 45.0% | |
| ! | GTTGTATGGTACGGAGTGTT+GGG | + | chr1_3:53447576-53447595 | Msa0125120:intron | 45.0% |
| CGCTTACTTTACTCTCGTGT+TGG | - | chr1_3:53447612-53447631 | None:intergenic | 45.0% | |
| CGAGAGTAAAGTAAGCGTAG+CGG | + | chr1_3:53447615-53447634 | Msa0125120:intron | 45.0% | |
| ACCATTAGAGAGAGAGAGAG+TGG | + | chr1_3:53447697-53447716 | Msa0125120:intron | 45.0% | |
| CCATTAGAGAGAGAGAGAGT+GGG | + | chr1_3:53447698-53447717 | Msa0125120:intron | 45.0% | |
| CATTAGAGAGAGAGAGAGTG+GGG | + | chr1_3:53447699-53447718 | Msa0125120:intron | 45.0% | |
| ATTAGAGAGAGAGAGAGTGG+GGG | + | chr1_3:53447700-53447719 | Msa0125120:intron | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | - | chr1_3:53447791-53447810 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGGGAATC+AGG | + | chr1_3:53447814-53447833 | Msa0125120:intron | 45.0% | |
| GAGGGGAATCAGGTTAAAAG+AGG | + | chr1_3:53447824-53447843 | Msa0125120:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr1_3:53447970-53447989 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr1_3:53447971-53447990 | None:intergenic | 45.0% |
| ! | TAGTAGTGGAACCCACTTAG+TGG | + | chr1_3:53448654-53448673 | Msa0125120:intron | 45.0% |
| AGACGCGCAACTAGATTAGT+TGG | - | chr1_3:53449750-53449769 | None:intergenic | 45.0% | |
| !! | TCTGCTTTTGCCCTTGAGTA+TGG | + | chr1_3:53450173-53450192 | Msa0125120:CDS | 45.0% |
| CCCTTGAGTATGGAGATTTC+TGG | + | chr1_3:53450183-53450202 | Msa0125120:CDS | 45.0% | |
| GCCAGAAATCTCCATACTCA+AGG | - | chr1_3:53450187-53450206 | None:intergenic | 45.0% | |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | - | chr1_3:53450227-53450246 | None:intergenic | 45.0% |
| ACTGGGAATTGTTCCAAAGC+TGG | - | chr1_3:53450428-53450447 | None:intergenic | 45.0% | |
| TCAAACCCCGACGGAAATTA+TGG | + | chr1_3:53450912-53450931 | Msa0125120:CDS | 45.0% | |
| CACTTCCATAATTTCCGTCG+GGG | - | chr1_3:53450920-53450939 | None:intergenic | 45.0% | |
| ! | CCATCATAGATGGGAGCTTT+TGG | - | chr1_3:53450973-53450992 | None:intergenic | 45.0% |
| CCAAAAGCTCCCATCTATGA+TGG | + | chr1_3:53450970-53450989 | Msa0125120:CDS | 45.0% | |
| GAAGCCAACACAAGATTGTG+TGG | + | chr1_3:53451221-53451240 | Msa0125120:CDS | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | - | chr1_3:53451228-53451247 | None:intergenic | 45.0% | |
| GGAGTCTCAACAGCAAAATG+TGG | + | chr1_3:53451815-53451834 | Msa0125120:CDS | 45.0% | |
| CATACAAGAATGAGACAGGG+TGG | + | chr1_3:53451931-53451950 | Msa0125120:CDS | 45.0% | |
| GGTGGGCAATAGTAACCAAA+GGG | + | chr1_3:53451949-53451968 | Msa0125120:CDS | 45.0% | |
| GGAAGTCACAATAGACCCTT+TGG | - | chr1_3:53451967-53451986 | None:intergenic | 45.0% | |
| ATTGTGACTTCCGTTGGTCA+TGG | + | chr1_3:53451975-53451994 | Msa0125120:CDS | 45.0% | |
| TTGTGACTTCCGTTGGTCAT+GGG | + | chr1_3:53451976-53451995 | Msa0125120:CDS | 45.0% | |
| AACTGTAGTCCCATGACCAA+CGG | - | chr1_3:53451988-53452007 | None:intergenic | 45.0% | |
| ! | GCTACAAGTGTTGCCATAAC+GGG | + | chr1_3:53452207-53452226 | Msa0125120:CDS | 45.0% |
| ! | CTACAAGTGTTGCCATAACG+GGG | + | chr1_3:53452208-53452227 | Msa0125120:CDS | 45.0% |
| !! | AAATAAAATGAAAAAAAAAA+TGG | - | chr1_3:53446111-53446130 | None:intergenic | 5.0% |
| ! | AGGCAAGCCTTAGAAGCGTA+TGG | + | chr1_3:53446221-53446240 | Msa0125120:intron | 50.0% |
| ACTCCGTCTTGCTTCTACTC+AGG | - | chr1_3:53446253-53446272 | None:intergenic | 50.0% | |
| AAGGAGAAGTGGGTCTACCT+TGG | + | chr1_3:53446295-53446314 | Msa0125120:intron | 50.0% | |
| CACAACAGCACTGCAGCAAA+AGG | + | chr1_3:53446472-53446491 | Msa0125120:intron | 50.0% | |
| CAACTTTCACCTCCAAGCAG+GGG | - | chr1_3:53447354-53447373 | None:intergenic | 50.0% | |
| CCAACTTTCACCTCCAAGCA+GGG | - | chr1_3:53447355-53447374 | None:intergenic | 50.0% | |
| TCCAACTTTCACCTCCAAGC+AGG | - | chr1_3:53447356-53447375 | None:intergenic | 50.0% | |
| ATCATCGTATTCAAGCCGGG+TGG | + | chr1_3:53447458-53447477 | Msa0125120:intron | 50.0% | |
| TTCAAGCCGGGTGGTTGAAA+TGG | + | chr1_3:53447467-53447486 | Msa0125120:intron | 50.0% | |
| CTATCGAACAGCAGTCAGAC+TGG | + | chr1_3:53447549-53447568 | Msa0125120:intron | 50.0% | |
| ! | AAGTAAGCGTAGCGGAGATG+AGG | + | chr1_3:53447623-53447642 | Msa0125120:intron | 50.0% |
| AGGATGTTGCGTTGGATGAG+TGG | + | chr1_3:53447643-53447662 | Msa0125120:intron | 50.0% | |
| CCCACTCTCTCTCTCTCTAA+TGG | - | chr1_3:53447701-53447720 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr1_3:53447966-53447985 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr1_3:53447972-53447991 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr1_3:53447969-53447988 | Msa0125120:intron | 50.0% | |
| AGGATGGCAGATGTCATGCA+AGG | + | chr1_3:53450058-53450077 | Msa0125120:intron | 50.0% | |
| ! | TGGCAAGTGGTTCTGTTGGT+TGG | - | chr1_3:53450223-53450242 | None:intergenic | 50.0% |
| GCTTCAGGCTTCGAAAGTTG+AGG | - | chr1_3:53450272-53450291 | None:intergenic | 50.0% | |
| CAACTCGCGTCATGACATCA+AGG | + | chr1_3:53450385-53450404 | Msa0125120:CDS | 50.0% | |
| GAAGCTCTTTCAAACCCCGA+CGG | + | chr1_3:53450903-53450922 | Msa0125120:CDS | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | + | chr1_3:53451234-53451253 | Msa0125120:CDS | 50.0% | |
| !! | AATGTGGGTTGATTCCCTGC+TGG | + | chr1_3:53451516-53451535 | Msa0125120:CDS | 50.0% |
| GGGTGGGCAATAGTAACCAA+AGG | + | chr1_3:53451948-53451967 | Msa0125120:CDS | 50.0% | |
| GGGTCTATTGTGACTTCCGT+TGG | + | chr1_3:53451969-53451988 | Msa0125120:CDS | 50.0% | |
| ! | CAGTGGCGGAGTTTGACAAA+TGG | + | chr1_3:53452015-53452034 | Msa0125120:CDS | 50.0% |
| TCCAGATTGTCACCGCACAA+TGG | + | chr1_3:53452172-53452191 | Msa0125120:CDS | 50.0% | |
| TCCATTGTGCGGTGACAATC+TGG | - | chr1_3:53452176-53452195 | None:intergenic | 50.0% | |
| ! | GTGTTGCCATAACGGGGATA+AGG | + | chr1_3:53452214-53452233 | Msa0125120:CDS | 50.0% |
| !! | CATTGGCCTTATCCCCGTTA+TGG | - | chr1_3:53452223-53452242 | None:intergenic | 50.0% |
| ! | CATAACGGGGATAAGGCCAA+TGG | + | chr1_3:53452221-53452240 | Msa0125120:CDS | 50.0% |
| AGCGAGCTAATGCTCACCAT+TGG | - | chr1_3:53452240-53452259 | None:intergenic | 50.0% | |
| TGAGCATTAGCTCGCTTCAC+TGG | + | chr1_3:53452244-53452263 | Msa0125120:exon | 50.0% | |
| !! | TAGCTCGCTTCACTGGTCTT+TGG | + | chr1_3:53452251-53452270 | Msa0125120:exon | 50.0% |
| !! | GCTTCACTGGTCTTTGGCAT+TGG | + | chr1_3:53452257-53452276 | Msa0125120:three_prime_UTR | 50.0% |
| ! | CTTGTTTGGTGAGTCGAGGG+AGG | + | chr1_3:53446172-53446191 | Msa0125120:intron | 55.0% |
| CGAGGGAGGAGTTAAACGAG+AGG | + | chr1_3:53446186-53446205 | Msa0125120:intron | 55.0% | |
| ACGAGAGGCTAGAGACTTGG+AGG | + | chr1_3:53446201-53446220 | Msa0125120:intron | 55.0% | |
| GCGGAAGCCATACGCTTCTA+AGG | - | chr1_3:53446231-53446250 | None:intergenic | 55.0% | |
| CCGTCTTGCTTCTACTCAGG+CGG | - | chr1_3:53446250-53446269 | None:intergenic | 55.0% | |
| CCGCCTGAGTAGAAGCAAGA+CGG | + | chr1_3:53446247-53446266 | Msa0125120:intron | 55.0% | |
| GAGAAGTGGGTCTACCTTGG+AGG | + | chr1_3:53446298-53446317 | Msa0125120:intron | 55.0% | |
| !! | GGCGGCTGTTTTGTGCTGTT+TGG | + | chr1_3:53447142-53447161 | Msa0125120:intron | 55.0% |
| AACCCAACTTCCCAAGCCCA+AGG | - | chr1_3:53447196-53447215 | None:intergenic | 55.0% | |
| AGCCACTCACATGGTTGTGG+GGG | - | chr1_3:53447328-53447347 | None:intergenic | 55.0% | |
| GAGCCACTCACATGGTTGTG+GGG | - | chr1_3:53447329-53447348 | None:intergenic | 55.0% | |
| GGAGCCACTCACATGGTTGT+GGG | - | chr1_3:53447330-53447349 | None:intergenic | 55.0% | |
| CCCTGCTTGGAGGTGAAAGT+TGG | + | chr1_3:53447352-53447371 | Msa0125120:intron | 55.0% | |
| !! | GTATGGTACGGAGTGTTGGG+TGG | + | chr1_3:53447579-53447598 | Msa0125120:intron | 55.0% |
| CGGAGATGAGGATGTTGCGT+TGG | + | chr1_3:53447635-53447654 | Msa0125120:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr1_3:53447958-53447977 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr1_3:53447957-53447976 | Msa0125120:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr1_3:53447958-53447977 | Msa0125120:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr1_3:53447964-53447983 | Msa0125120:intron | 55.0% | |
| TCAGGGACATCAAGGAGGTC+TGG | + | chr1_3:53448115-53448134 | Msa0125120:intron | 55.0% | |
| GGTGAAGTGAAGCTAGCTGG+TGG | - | chr1_3:53448161-53448180 | None:intergenic | 55.0% | |
| AGCGGTGAAGTGAAGCTAGC+TGG | - | chr1_3:53448164-53448183 | None:intergenic | 55.0% | |
| ! | CAGATGTCATGCAAGGCACC+AGG | + | chr1_3:53450065-53450084 | Msa0125120:intron | 55.0% |
| TCCAGCTCTTGCACCAGCTT+TGG | + | chr1_3:53450412-53450431 | Msa0125120:CDS | 55.0% | |
| TCCAAAGCTGGTGCAAGAGC+TGG | - | chr1_3:53450416-53450435 | None:intergenic | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | + | chr1_3:53451237-53451256 | Msa0125120:CDS | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | + | chr1_3:53451242-53451261 | Msa0125120:CDS | 55.0% | |
| AGTGGGTCTACCTTGGAGGC+AGG | + | chr1_3:53446302-53446321 | Msa0125120:intron | 60.0% | |
| GTGGGTCTACCTTGGAGGCA+GGG | + | chr1_3:53446303-53446322 | Msa0125120:intron | 60.0% | |
| TGGGTCTACCTTGGAGGCAG+GGG | + | chr1_3:53446304-53446323 | Msa0125120:intron | 60.0% | |
| AGCCAATTGGGCCTTGGGCT+TGG | + | chr1_3:53447182-53447201 | Msa0125120:intron | 60.0% | |
| GCCAATTGGGCCTTGGGCTT+GGG | + | chr1_3:53447183-53447202 | Msa0125120:intron | 60.0% | |
| TCCCAAGCCCAAGGCCCAAT+TGG | - | chr1_3:53447187-53447206 | None:intergenic | 60.0% | |
| GGCCTTGGGCTTGGGAAGTT+GGG | + | chr1_3:53447191-53447210 | Msa0125120:intron | 60.0% | |
| AGCCCCCACAACCATGTGAG+TGG | + | chr1_3:53447323-53447342 | Msa0125120:intron | 60.0% | |
| CGGAGCCACTCACATGGTTG+TGG | - | chr1_3:53447331-53447350 | None:intergenic | 60.0% | |
| CTTTCACCTCCAAGCAGGGG+CGG | - | chr1_3:53447351-53447370 | None:intergenic | 60.0% | |
| TCAAGGAGGTCTGGACCACC+TGG | + | chr1_3:53448124-53448143 | Msa0125120:CDS | 60.0% | |
| ! | GTCATGCAAGGCACCAGGTG+AGG | + | chr1_3:53450070-53450089 | Msa0125120:CDS | 60.0% |
| GTCTACCTTGGAGGCAGGGG+CGG | + | chr1_3:53446307-53446326 | Msa0125120:intron | 65.0% | |
| GGGCCTTGGGCTTGGGAAGT+TGG | + | chr1_3:53447190-53447209 | Msa0125120:intron | 65.0% | |
| CAGGGGCGGAGCCACTCACA+TGG | - | chr1_3:53447337-53447356 | None:intergenic | 70.0% | |
| TGAGTGGCTCCGCCCCTGCT+TGG | + | chr1_3:53447339-53447358 | Msa0125120:intron | 70.0% | |
| TGGCTCCGCCCCTGCCTCCA+AGG | - | chr1_3:53446315-53446334 | None:intergenic | 75.0% | |
| TTGGAGGCAGGGGCGGAGCC+AGG | + | chr1_3:53446314-53446333 | Msa0125120:intron | 75.0% | |
| GTGGCTCCGCCCCTGCTTGG+AGG | + | chr1_3:53447342-53447361 | Msa0125120:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 53445787 | 53452511 | 53445787 | ID=Msa0125120;Name=Msa0125120 |
| chr1_3 | mRNA | 53445787 | 53452511 | 53445787 | ID=Msa0125120-mRNA-1;Parent=Msa0125120;Name=Msa0125120-mRNA-1;_AED=0.18;_eAED=0.18;_QI=89|1|1|1|0.66|0.71|7|258|669 |
| chr1_3 | exon | 53445787 | 53446082 | 53445787 | ID=Msa0125120-mRNA-1:exon:16365;Parent=Msa0125120-mRNA-1 |
| chr1_3 | exon | 53448119 | 53448211 | 53448119 | ID=Msa0125120-mRNA-1:exon:16366;Parent=Msa0125120-mRNA-1 |
| chr1_3 | exon | 53450068 | 53450516 | 53450068 | ID=Msa0125120-mRNA-1:exon:16367;Parent=Msa0125120-mRNA-1 |
| chr1_3 | exon | 53450667 | 53450761 | 53450667 | ID=Msa0125120-mRNA-1:exon:16368;Parent=Msa0125120-mRNA-1 |
| chr1_3 | exon | 53450875 | 53451008 | 53450875 | ID=Msa0125120-mRNA-1:exon:16369;Parent=Msa0125120-mRNA-1 |
| chr1_3 | exon | 53451106 | 53451564 | 53451106 | ID=Msa0125120-mRNA-1:exon:16370;Parent=Msa0125120-mRNA-1 |
| chr1_3 | exon | 53451681 | 53452511 | 53451681 | ID=Msa0125120-mRNA-1:exon:16371;Parent=Msa0125120-mRNA-1 |
| chr1_3 | five_prime_UTR | 53445787 | 53445875 | 53445787 | ID=Msa0125120-mRNA-1:five_prime_utr;Parent=Msa0125120-mRNA-1 |
| chr1_3 | CDS | 53445876 | 53446082 | 53445876 | ID=Msa0125120-mRNA-1:cds;Parent=Msa0125120-mRNA-1 |
| chr1_3 | CDS | 53448119 | 53448211 | 53448119 | ID=Msa0125120-mRNA-1:cds;Parent=Msa0125120-mRNA-1 |
| chr1_3 | CDS | 53450068 | 53450516 | 53450068 | ID=Msa0125120-mRNA-1:cds;Parent=Msa0125120-mRNA-1 |
| chr1_3 | CDS | 53450667 | 53450761 | 53450667 | ID=Msa0125120-mRNA-1:cds;Parent=Msa0125120-mRNA-1 |
| chr1_3 | CDS | 53450875 | 53451008 | 53450875 | ID=Msa0125120-mRNA-1:cds;Parent=Msa0125120-mRNA-1 |
| chr1_3 | CDS | 53451106 | 53451564 | 53451106 | ID=Msa0125120-mRNA-1:cds;Parent=Msa0125120-mRNA-1 |
| chr1_3 | CDS | 53451681 | 53452253 | 53451681 | ID=Msa0125120-mRNA-1:cds;Parent=Msa0125120-mRNA-1 |
| chr1_3 | three_prime_UTR | 53452254 | 53452511 | 53452254 | ID=Msa0125120-mRNA-1:three_prime_utr;Parent=Msa0125120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
