Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029900 | XP_003590763.1 | 98.057 | 669 | 13 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029900 | sp|Q9SS87|SEOB_ARATH | 30.794 | 630 | 366 | 21 | 93 | 661 | 109 | 729 | 3.02e-88 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007080 | Msa0029900 | 0.805732 | 1.157848e-49 | -8.615850e-47 |
| Msa0012060 | Msa0029900 | 0.802801 | 4.721126e-49 | -8.615850e-47 |
| Msa0029880 | Msa0029900 | 0.867575 | 1.236641e-65 | -8.615850e-47 |
| Msa0029890 | Msa0029900 | 0.874775 | 5.188310e-68 | -8.615850e-47 |
| Msa0029900 | Msa0029910 | 0.897061 | 2.024961e-76 | -8.615850e-47 |
| Msa0029900 | Msa0077120 | 0.908553 | 1.507177e-81 | -8.615850e-47 |
| Msa0029900 | Msa0077130 | 0.918618 | 1.247799e-86 | -8.615850e-47 |
| Msa0029900 | Msa0077140 | 0.863802 | 1.918874e-64 | -8.615850e-47 |
| Msa0029900 | Msa0125090 | 0.827053 | 1.934776e-54 | -8.615850e-47 |
| Msa0029900 | Msa0125100 | 0.816793 | 4.604279e-52 | -8.615850e-47 |
| Msa0029900 | Msa0125110 | 0.878135 | 3.586192e-69 | -8.615850e-47 |
| Msa0029900 | Msa0125120 | 0.846310 | 2.354059e-59 | -8.615850e-47 |
| Msa0029900 | Msa0141230 | 0.803661 | 3.133656e-49 | -8.615850e-47 |
| Msa0029900 | Msa0169860 | 0.873571 | 1.326287e-67 | -8.615850e-47 |
| Msa0029900 | Msa0169870 | 0.866321 | 3.105950e-65 | -8.615850e-47 |
| Msa0029900 | Msa0169920 | 0.903414 | 3.557432e-79 | -8.615850e-47 |
| Msa0029900 | Msa0170090 | 0.960357 | 1.821984e-118 | -8.615850e-47 |
| Msa0029900 | Msa0220420 | 0.801495 | 8.766810e-49 | -8.615850e-47 |
| Msa0029900 | Msa0299550 | 0.803795 | 2.939027e-49 | -8.615850e-47 |
| Msa0029900 | Msa0483650 | 0.809090 | 2.246574e-50 | -8.615850e-47 |
| Msa0029900 | Msa0484780 | 0.806877 | 6.643945e-50 | -8.615850e-47 |
| Msa0029900 | Msa0620790 | 0.809146 | 2.185137e-50 | -8.615850e-47 |
| Msa0029900 | Msa0626280 | 0.813883 | 2.042345e-51 | -8.615850e-47 |
| Msa0029900 | Msa0664850 | 0.801869 | 7.346937e-49 | -8.615850e-47 |
| Msa0029900 | Msa0696740 | 0.801672 | 8.062030e-49 | -8.615850e-47 |
| Msa0029900 | Msa0696770 | 0.804197 | 2.424991e-49 | -8.615850e-47 |
| Msa0029900 | Msa0730270 | 0.812544 | 4.018622e-51 | -8.615850e-47 |
| Msa0029900 | Msa0977180 | -0.800672 | 1.291098e-48 | -8.615850e-47 |
| Msa0029900 | Msa1082500 | 0.816407 | 5.617848e-52 | -8.615850e-47 |
| Msa0029900 | Msa1098560 | 0.803873 | 2.832437e-49 | -8.615850e-47 |
| Msa0029900 | Msa1214880 | 0.804870 | 1.755071e-49 | -8.615850e-47 |
| Msa0029900 | Msa1278840 | 0.816667 | 4.913630e-52 | -8.615850e-47 |
| Msa0029900 | Msa1381940 | 0.801744 | 7.791387e-49 | -8.615850e-47 |
| Msa0029900 | Msa1464160 | 0.835485 | 1.632893e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029900 | MtrunA17_Chr1g0186851 | 98.057 | 669 | 13 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1350 |
| Msa0029900 | MtrunA17_Chr1g0186861 | 83.409 | 663 | 108 | 1 | 1 | 661 | 1 | 663 | 0.0 | 1144 |
| Msa0029900 | MtrunA17_Chr1g0187041 | 78.228 | 666 | 143 | 1 | 1 | 664 | 1 | 666 | 0.0 | 1050 |
| Msa0029900 | MtrunA17_Chr1g0186911 | 84.492 | 561 | 87 | 0 | 101 | 661 | 1 | 561 | 0.0 | 981 |
| Msa0029900 | MtrunA17_Chr1g0186841 | 59.132 | 668 | 265 | 6 | 5 | 669 | 9 | 671 | 0.0 | 813 |
| Msa0029900 | MtrunA17_Chr1g0165791 | 35.982 | 667 | 403 | 10 | 20 | 668 | 25 | 685 | 4.08e-148 | 446 |
| Msa0029900 | MtrunA17_Chr7g0226571 | 34.104 | 692 | 397 | 19 | 24 | 661 | 25 | 711 | 2.86e-112 | 354 |
| Msa0029900 | MtrunA17_Chr1g0187001 | 31.587 | 668 | 393 | 16 | 20 | 663 | 11 | 638 | 8.59e-104 | 330 |
| Msa0029900 | MtrunA17_Chr1g0186991 | 31.297 | 671 | 402 | 17 | 20 | 663 | 31 | 669 | 7.51e-101 | 323 |
| Msa0029900 | MtrunA17_Chr8g0381301 | 31.313 | 693 | 416 | 22 | 22 | 660 | 17 | 703 | 1.71e-98 | 317 |
| Msa0029900 | MtrunA17_Chr3g0116601 | 31.679 | 685 | 413 | 19 | 23 | 659 | 27 | 704 | 3.17e-98 | 317 |
| Msa0029900 | MtrunA17_Chr1g0186981 | 30.376 | 665 | 403 | 14 | 20 | 660 | 34 | 662 | 4.59e-94 | 305 |
| Msa0029900 | MtrunA17_Chr1g0186901 | 79.612 | 103 | 19 | 1 | 1 | 101 | 1 | 103 | 1.11e-48 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029900 | AT3G01680.1 | 30.794 | 630 | 366 | 21 | 93 | 661 | 109 | 729 | 3.07e-89 | 294 |
| Msa0029900 | AT3G01670.1 | 25.847 | 708 | 434 | 22 | 22 | 659 | 134 | 820 | 2.78e-54 | 199 |
| Msa0029900 | AT3G01670.2 | 25.847 | 708 | 434 | 22 | 22 | 659 | 158 | 844 | 4.76e-54 | 199 |
| Msa0029900 | AT1G67790.1 | 24.378 | 603 | 398 | 19 | 96 | 657 | 79 | 664 | 2.86e-40 | 157 |
Find 154 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTATATGATCATAAAT+TGG | 0.139133 | 1_1:-55616383 | None:intergenic |
| GGAAATTATGGAAGTGTTTA+AGG | 0.152895 | 1_1:+55616114 | Msa0029900:CDS |
| AAAACATCGCAATGAAATTT+TGG | 0.167607 | 1_1:+55615490 | Msa0029900:CDS |
| TATGTACTTGATACCTTTAA+TGG | 0.197622 | 1_1:-55616528 | None:intergenic |
| CATTGATTCTTCTTTGGATT+TGG | 0.201689 | 1_1:-55616672 | None:intergenic |
| CATCACTTTGCACCCATTAA+AGG | 0.204242 | 1_1:+55616515 | Msa0029900:CDS |
| AATTCCCAGTTGATGTATAT+TGG | 0.204655 | 1_1:+55615630 | Msa0029900:CDS |
| ACATTGATATAAAGATTAAA+TGG | 0.204759 | 1_1:+55616732 | Msa0029900:CDS |
| TGTTTAAGGTGCTGATATTT+TGG | 0.216136 | 1_1:+55616128 | Msa0029900:CDS |
| GAAAAGTCTGTCATCATTTA+TGG | 0.229545 | 1_1:+55616880 | Msa0029900:CDS |
| CAAATGTGGTTAACAACTTT+TGG | 0.237806 | 1_1:+55617022 | Msa0029900:CDS |
| CATTGACCTTATCCATATTA+TGG | 0.238930 | 1_1:-55617413 | None:intergenic |
| TTGTGTCATTGATTCTTCTT+TGG | 0.239627 | 1_1:-55616678 | None:intergenic |
| CTTGATTATGCCTAATGATT+TGG | 0.255438 | 1_1:-55615432 | None:intergenic |
| TCAAACCCCGACGGAAATTA+TGG | 0.258203 | 1_1:+55616102 | Msa0029900:CDS |
| CCATCATAGATGGGAGCTTT+TGG | 0.260268 | 1_1:-55616160 | None:intergenic |
| AGGCAGGATTTATCTCATTT+TGG | 0.270915 | 1_1:+55615866 | Msa0029900:CDS |
| ATTCCATATGATTCAAGTTT+GGG | 0.287868 | 1_1:+55616628 | Msa0029900:CDS |
| CTACAAGTGTTGCCATAATA+TGG | 0.289104 | 1_1:+55617401 | Msa0029900:CDS |
| CAAAAGTTGTTAACCACATT+TGG | 0.289864 | 1_1:-55617021 | None:intergenic |
| TGCTCATCAGACATGGTTAA+AGG | 0.291226 | 1_1:-55612678 | None:intergenic |
| TCAAAATTGAGATGTCTTCT+TGG | 0.293163 | 1_1:-55616358 | None:intergenic |
| CATTCCATATGATTCAAGTT+TGG | 0.299165 | 1_1:+55616627 | Msa0029900:CDS |
| TCCAGCTCTTGCACCAGCTT+TGG | 0.314260 | 1_1:+55615604 | Msa0029900:CDS |
| ATTCCCAGTTGATGTATATT+GGG | 0.322317 | 1_1:+55615631 | Msa0029900:CDS |
| CCCTTGAGTATGGAGACTTC+TGG | 0.329114 | 1_1:+55615375 | Msa0029900:CDS |
| CTTGAGATTCCTAATGTTGC+TGG | 0.329358 | 1_1:+55617318 | Msa0029900:CDS |
| TCACAAATGCAACTAGAATA+AGG | 0.336343 | 1_1:+55617617 | Msa0029900:three_prime_UTR |
| CATGTCTGATGAGCACATTT+TGG | 0.345477 | 1_1:+55612686 | Msa0029900:CDS |
| CTCCCCAAACTTGAATCATA+TGG | 0.346723 | 1_1:-55616631 | None:intergenic |
| ATAACCCAATATACATCAAC+TGG | 0.359445 | 1_1:-55615635 | None:intergenic |
| ATTCAAGTTTGGGGAGTAAA+GGG | 0.363993 | 1_1:+55616638 | Msa0029900:CDS |
| TCTGGACACTCGATAAAATC+TGG | 0.364613 | 1_1:-55617348 | None:intergenic |
| AAAACCTGTCAAACTATTCA+TGG | 0.371032 | 1_1:+55615318 | Msa0029900:CDS |
| TCTTCTTTGGATTTGGAGTA+AGG | 0.371960 | 1_1:-55616665 | None:intergenic |
| GTTGAGACTCCAAGCAAAAT+AGG | 0.374745 | 1_1:-55616996 | None:intergenic |
| TCTTTATATGATCATAAATT+GGG | 0.380456 | 1_1:-55616382 | None:intergenic |
| TCCATTGTGCGGTGACAATC+TGG | 0.382744 | 1_1:-55617366 | None:intergenic |
| TTTAGTCGAACCATCATAGA+TGG | 0.384861 | 1_1:-55616170 | None:intergenic |
| ATGTACTTGATACCTTTAAT+GGG | 0.385849 | 1_1:-55616527 | None:intergenic |
| TATGATCATATAAAGAAAAC+TGG | 0.388913 | 1_1:+55616389 | Msa0029900:CDS |
| ACTCATGGCTACATTGCTTA+AGG | 0.392544 | 1_1:-55617567 | None:intergenic |
| AAAGATGTCGCAATCAATAA+AGG | 0.397602 | 1_1:+55617231 | Msa0029900:CDS |
| GGACTCAACACAAGAAATAA+AGG | 0.400912 | 1_1:-55616578 | None:intergenic |
| TAAGGTCAATGGCGAGCATT+AGG | 0.411115 | 1_1:+55617425 | Msa0029900:CDS |
| CTTTCTTACAAGAATGAGAC+TGG | 0.413501 | 1_1:+55617120 | Msa0029900:CDS |
| CAGACATGGTTAAAGGGTTA+TGG | 0.416704 | 1_1:-55612671 | None:intergenic |
| CATCAAACTTAGTGTCACTA+TGG | 0.419012 | 1_1:-55612731 | None:intergenic |
| TAAAGGTATCAAGTACATAA+AGG | 0.437070 | 1_1:+55616532 | Msa0029900:CDS |
| GAACCACTTGCCAAATCATT+AGG | 0.438307 | 1_1:+55615422 | Msa0029900:CDS |
| TGGCAAGTGGTTCTGTTGGT+TGG | 0.443588 | 1_1:-55615412 | None:intergenic |
| AACAAACACTGTTACACAAC+AGG | 0.447051 | 1_1:+55617086 | Msa0029900:CDS |
| GATTCAAGTTTGGGGAGTAA+AGG | 0.451419 | 1_1:+55616637 | Msa0029900:CDS |
| GTTCTTGTTCATTTCAACTC+TGG | 0.451654 | 1_1:+55616328 | Msa0029900:CDS |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1_1:-55616437 | None:intergenic |
| CTTTGAAGTCAAAGATGCCT+TGG | 0.456421 | 1_1:+55616483 | Msa0029900:CDS |
| AGAAGTCACAATAGACCCTT+TGG | 0.457140 | 1_1:-55617157 | None:intergenic |
| CAACATGGGTTGAACGTGTA+AGG | 0.459385 | 1_1:-55612785 | None:intergenic |
| GGAGCTCAACAATTTGATCA+AGG | 0.463664 | 1_1:+55615511 | Msa0029900:CDS |
| TAATAGCGGCATCATTTGCT+AGG | 0.464096 | 1_1:-55616951 | None:intergenic |
| ATTGTGACTTCTGTTGGTCA+TGG | 0.465244 | 1_1:+55617168 | Msa0029900:CDS |
| TCCAAAGCTGGTGCAAGAGC+TGG | 0.468376 | 1_1:-55615605 | None:intergenic |
| TCAGGGACATCAAGGAGGTC+TGG | 0.469377 | 1_1:+55612987 | Msa0029900:intron |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1_1:+55615329 | Msa0029900:CDS |
| TATAATTATCAGGGACATCA+AGG | 0.473246 | 1_1:+55612979 | Msa0029900:intron |
| CATTGAAATCATCATTGAGT+TGG | 0.474539 | 1_1:+55615547 | Msa0029900:CDS |
| TTGTATGCTATTTCCTCACC+TGG | 0.476461 | 1_1:-55615275 | None:intergenic |
| CAACCCATGAATAGTTTGAC+AGG | 0.478125 | 1_1:-55615322 | None:intergenic |
| CATTGATATAAAGATTAAAT+GGG | 0.479358 | 1_1:+55616733 | Msa0029900:CDS |
| GCGAGCATTAGGTAGCTTCA+TGG | 0.481339 | 1_1:+55617436 | Msa0029900:exon |
| GCTCATCAGACATGGTTAAA+GGG | 0.484807 | 1_1:-55612677 | None:intergenic |
| TTATATCAATGTCAGCCAGC+AGG | 0.486824 | 1_1:-55616721 | None:intergenic |
| ACAATTTGATCAAGGCAACT+TGG | 0.492049 | 1_1:+55615519 | Msa0029900:CDS |
| TTGTGACTTCTGTTGGTCAT+GGG | 0.494189 | 1_1:+55617169 | Msa0029900:CDS |
| CATAATATGGATAAGGTCAA+TGG | 0.494269 | 1_1:+55617414 | Msa0029900:CDS |
| TCACAATGCACTATACAGAT+TGG | 0.496814 | 1_1:+55615932 | Msa0029900:CDS |
| CTGGTGGATTAATGTTATCC+AGG | 0.508936 | 1_1:-55613014 | None:intergenic |
| ATCTTTCCATTTGTCAAACT+CGG | 0.509793 | 1_1:-55617214 | None:intergenic |
| GGGTCTATTGTGACTTCTGT+TGG | 0.512177 | 1_1:+55617162 | Msa0029900:CDS |
| GTGTTGCCATAATATGGATA+AGG | 0.513789 | 1_1:+55617407 | Msa0029900:CDS |
| GCTTCATGGGTATTTAGCAT+TGG | 0.514749 | 1_1:+55617450 | Msa0029900:three_prime_UTR |
| ACACTTCCATAATTTCCGTC+GGG | 0.516308 | 1_1:-55616108 | None:intergenic |
| CCAAAAGCTCCCATCTATGA+TGG | 0.519285 | 1_1:+55616160 | Msa0029900:CDS |
| ACTGGGAATTGTTCCAAAGC+TGG | 0.521352 | 1_1:-55615617 | None:intergenic |
| CTGAGTAACAATTGCAACAA+TGG | 0.523241 | 1_1:-55615663 | None:intergenic |
| CTGGACACTCGATAAAATCT+GGG | 0.524375 | 1_1:-55617347 | None:intergenic |
| TCAAGGAGGTCTGGACCACC+TGG | 0.524704 | 1_1:+55612996 | Msa0029900:CDS |
| CAATGACACAAGAATTAATG+TGG | 0.525892 | 1_1:+55616690 | Msa0029900:CDS |
| CAGTGTCCGAGTTTGACAAA+TGG | 0.528291 | 1_1:+55617208 | Msa0029900:CDS |
| ATCATTCCATTCCTCCACAA+TGG | 0.531780 | 1_1:-55616438 | None:intergenic |
| AATGTGGGTTGATTCCCTGC+TGG | 0.532892 | 1_1:+55616706 | Msa0029900:CDS |
| CAACAATTCACTAAGTATGC+TGG | 0.534554 | 1_1:+55616925 | Msa0029900:CDS |
| ATGCCTAATGATTTGGCAAG+TGG | 0.539047 | 1_1:-55615425 | None:intergenic |
| GCTTCAGGCTTTGAAAGTTG+AGG | 0.543555 | 1_1:-55615461 | None:intergenic |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.544476 | 1_1:-55615416 | None:intergenic |
| CAGATGTCATGCAAGGCACC+AGG | 0.546738 | 1_1:+55615257 | Msa0029900:intron |
| ATGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1_1:+55616899 | Msa0029900:CDS |
| AGCGGTGAAGTGAAGCTAGC+TGG | 0.549501 | 1_1:-55613033 | None:intergenic |
| CATTTATGGAGGTAAAGATA+AGG | 0.555548 | 1_1:+55616894 | Msa0029900:CDS |
| AACACTTCCATAATTTCCGT+CGG | 0.557817 | 1_1:-55616109 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1_1:+55615900 | Msa0029900:CDS |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1_1:+55616432 | Msa0029900:CDS |
| CTTCTTTGGATTTGGAGTAA+GGG | 0.567493 | 1_1:-55616664 | None:intergenic |
| TATATCAATGTCAGCCAGCA+GGG | 0.567784 | 1_1:-55616720 | None:intergenic |
| CAGAATATAACAAGTTACTC+AGG | 0.569457 | 1_1:+55616071 | Msa0029900:CDS |
| AAACCTGTCAAACTATTCAT+GGG | 0.575469 | 1_1:+55615319 | Msa0029900:CDS |
| AATAGCGGCATCATTTGCTA+GGG | 0.575747 | 1_1:-55616950 | None:intergenic |
| CAAAATGTGCTCATCAGACA+TGG | 0.576873 | 1_1:-55612685 | None:intergenic |
| CAACGGTAATGCAAGACTCA+TGG | 0.577072 | 1_1:-55617582 | None:intergenic |
| TGTGAATAAGTGATCGCACT+AGG | 0.578637 | 1_1:-55612626 | None:intergenic |
| GGGTGGGCAATTGTAACCAA+AGG | 0.579885 | 1_1:+55617141 | Msa0029900:CDS |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1_1:-55616415 | None:intergenic |
| CAGCAACATTAGGAATCTCA+AGG | 0.582036 | 1_1:-55617317 | None:intergenic |
| TGATGTAGAATCTTTCCTTG+TGG | 0.585970 | 1_1:-55616599 | None:intergenic |
| TGATGGTTCGACTAAAACAC+TGG | 0.587238 | 1_1:+55616177 | Msa0029900:CDS |
| TTTCTTGTGTTGAGTCCACA+AGG | 0.590992 | 1_1:+55616584 | Msa0029900:CDS |
| TTAGTCGAACCATCATAGAT+GGG | 0.591512 | 1_1:-55616169 | None:intergenic |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1_1:+55616424 | Msa0029900:CDS |
| CGAGCATTAGGTAGCTTCAT+GGG | 0.595092 | 1_1:+55617437 | Msa0029900:exon |
| GAAGCCAACACAAGATTGTG+TGG | 0.598027 | 1_1:+55616411 | Msa0029900:CDS |
| GGTGGGCAATTGTAACCAAA+GGG | 0.598470 | 1_1:+55617142 | Msa0029900:CDS |
| GTCATGCAAGGCACCAGGTG+AGG | 0.600067 | 1_1:+55615262 | Msa0029900:CDS |
| GTGCGATCACTTATTCACAT+TGG | 0.606075 | 1_1:+55612630 | Msa0029900:CDS |
| ACCAGAAGTCTCCATACTCA+AGG | 0.607323 | 1_1:-55615376 | None:intergenic |
| CAACTCGCGTCATGACATCA+AGG | 0.608552 | 1_1:+55615577 | Msa0029900:CDS |
| GCAGAACGTTATCAACAACA+TGG | 0.612191 | 1_1:-55612800 | None:intergenic |
| TTACAAGAATGAGACTGGGT+GGG | 0.613509 | 1_1:+55617125 | Msa0029900:CDS |
| TTCCATATGATTCAAGTTTG+GGG | 0.613604 | 1_1:+55616629 | Msa0029900:CDS |
| TGTGATCTCACTGTGATCAA+CGG | 0.622745 | 1_1:-55617599 | None:intergenic |
| CACTTCCATAATTTCCGTCG+GGG | 0.623012 | 1_1:-55616107 | None:intergenic |
| AATGACACAAGAATTAATGT+GGG | 0.631951 | 1_1:+55616691 | Msa0029900:CDS |
| TTTGAAGCAAATTAACTCTG+AGG | 0.632146 | 1_1:+55613062 | Msa0029900:CDS |
| TTTCTTACAAGAATGAGACT+GGG | 0.638297 | 1_1:+55617121 | Msa0029900:CDS |
| TCCAGATTGTCACCGCACAA+TGG | 0.640478 | 1_1:+55617365 | Msa0029900:CDS |
| CTTACAAGAATGAGACTGGG+TGG | 0.646290 | 1_1:+55617124 | Msa0029900:CDS |
| CAGAACGTTATCAACAACAT+GGG | 0.651391 | 1_1:-55612799 | None:intergenic |
| GGAGTCTCAACAGCCAAATG+TGG | 0.652213 | 1_1:+55617008 | Msa0029900:CDS |
| CCAGAAGTCTCCATACTCAA+GGG | 0.652849 | 1_1:-55615375 | None:intergenic |
| AGGTATCAAGTACATAAAGG+AGG | 0.656067 | 1_1:+55616535 | Msa0029900:CDS |
| AAGTCTGTCATCATTTATGG+AGG | 0.656284 | 1_1:+55616883 | Msa0029900:CDS |
| GTGGATTAATGTTATCCAGG+TGG | 0.656925 | 1_1:-55613011 | None:intergenic |
| AGTCTTCGTCTGCTTAATAG+CGG | 0.660331 | 1_1:-55616965 | None:intergenic |
| ATGATGGCAGATGTCATGCA+AGG | 0.662170 | 1_1:+55615250 | Msa0029900:intron |
| ATTTAGAGAACATCATCACA+AGG | 0.662401 | 1_1:+55617266 | Msa0029900:CDS |
| AAGTGATGCAAAACATACCA+AGG | 0.663117 | 1_1:-55616500 | None:intergenic |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1_1:-55615634 | None:intergenic |
| AAGCCAACACAAGATTGTGT+GGG | 0.670390 | 1_1:+55616412 | Msa0029900:CDS |
| TAATGAACACTTCCATTGTG+CGG | 0.679237 | 1_1:-55617377 | None:intergenic |
| AAGGTGAGAGCAAATATGAA+CGG | 0.680495 | 1_1:-55617298 | None:intergenic |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1_1:+55616427 | Msa0029900:CDS |
| GAAGCTCTTTCAAACCCCGA+CGG | 0.688404 | 1_1:+55616093 | Msa0029900:CDS |
| GGTGAAGTGAAGCTAGCTGG+TGG | 0.705282 | 1_1:-55613030 | None:intergenic |
| AATTATCAGGGACATCAAGG+AGG | 0.721162 | 1_1:+55612982 | Msa0029900:intron |
| ATTTGCTTCAAAGTACACAG+CGG | 0.765745 | 1_1:-55613051 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATATTATTAGAAGT+TGG | - | chr1_1:55612907-55612926 | None:intergenic | 10.0% |
| !!! | ACTTCTAATAATATATTTTT+CGG | + | chr1_1:55612907-55612926 | Msa0029900:intron | 10.0% |
| !!! | TTGTTTCTTATTTTAATTAT+GGG | - | chr1_1:55613299-55613318 | None:intergenic | 10.0% |
| !!! | TTTGTTTCTTATTTTAATTA+TGG | - | chr1_1:55613300-55613319 | None:intergenic | 10.0% |
| !! | TCTAAAAAAAATCATTAAAT+GGG | - | chr1_1:55613352-55613371 | None:intergenic | 10.0% |
| !!! | TTTTTTAATTCAAAATCTTA+AGG | + | chr1_1:55614163-55614182 | Msa0029900:intron | 10.0% |
| !! | AAAGTTATTAAAATTAAGTA+AGG | + | chr1_1:55614832-55614851 | Msa0029900:intron | 10.0% |
| !!! | ATATGTTTTTATAATTAAAC+AGG | + | chr1_1:55616274-55616293 | Msa0029900:intron | 10.0% |
| !! | AGTTATTTGTATTTAATTAG+AGG | - | chr1_1:55612955-55612974 | None:intergenic | 15.0% |
| !!! | ATAACTTGTTTATAATTATC+AGG | + | chr1_1:55612969-55612988 | Msa0029900:intron | 15.0% |
| !!! | TAACTTGTTTATAATTATCA+GGG | + | chr1_1:55612970-55612989 | Msa0029900:intron | 15.0% |
| !!! | CTCTAAAAAAAATCATTAAA+TGG | - | chr1_1:55613353-55613372 | None:intergenic | 15.0% |
| !!! | CATTTAATGATTTTTTTTAG+AGG | + | chr1_1:55613351-55613370 | Msa0029900:intron | 15.0% |
| !!! | TCACTAAAAAAGTTTTAAAT+AGG | + | chr1_1:55613440-55613459 | Msa0029900:intron | 15.0% |
| !!! | TAATGCATTTTATTATGAAA+TGG | - | chr1_1:55613669-55613688 | None:intergenic | 15.0% |
| !! | CAAAAAATGTTATATTCAAA+TGG | - | chr1_1:55613877-55613896 | None:intergenic | 15.0% |
| !!! | TATTTTACTAAAATTGACAA+GGG | - | chr1_1:55614305-55614324 | None:intergenic | 15.0% |
| !!! | TTATTTTACTAAAATTGACA+AGG | - | chr1_1:55614306-55614325 | None:intergenic | 15.0% |
| !! | AAAAAAAATTGGTATAAAAG+AGG | + | chr1_1:55614324-55614343 | Msa0029900:intron | 15.0% |
| !! | AAAAAAATTGGTATAAAAGA+GGG | + | chr1_1:55614325-55614344 | Msa0029900:intron | 15.0% |
| !!! | TTTAGAGTTAAATATGTTTT+TGG | + | chr1_1:55614372-55614391 | Msa0029900:intron | 15.0% |
| !! | AATGCTAATAAAATTAAGTA+AGG | - | chr1_1:55614430-55614449 | None:intergenic | 15.0% |
| !!! | AAACAAATTTAGTTTTTACA+AGG | - | chr1_1:55614492-55614511 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAATTCA+AGG | - | chr1_1:55614521-55614540 | None:intergenic | 15.0% |
| !!! | TAAATTTTTGAACGATATTT+TGG | + | chr1_1:55614529-55614548 | Msa0029900:intron | 15.0% |
| !! | TAAGCATAATTAAACAAATT+TGG | + | chr1_1:55614760-55614779 | Msa0029900:intron | 15.0% |
| !!! | TTTTTTATCCCTATAAAATT+AGG | - | chr1_1:55614874-55614893 | None:intergenic | 15.0% |
| !! | TATAATAATGAAAATGGAAA+AGG | + | chr1_1:55614913-55614932 | Msa0029900:intron | 15.0% |
| !!! | CCAATTTTTTTTTTAAAAGA+TGG | - | chr1_1:55614972-55614991 | None:intergenic | 15.0% |
| !!! | CCATCTTTTAAAAAAAAAAT+TGG | + | chr1_1:55614969-55614988 | Msa0029900:intron | 15.0% |
| !! | TTAAAAAAAAAATTGGAGAA+AGG | + | chr1_1:55614976-55614995 | Msa0029900:intron | 15.0% |
| !!! | TATGAACTTTTAAAAAATGT+TGG | - | chr1_1:55615072-55615091 | None:intergenic | 15.0% |
| !! | ATATTAATCAAATTCATGAA+AGG | + | chr1_1:55615089-55615108 | Msa0029900:intron | 15.0% |
| !! | TTTACTATAAAGTTTACATA+AGG | - | chr1_1:55615203-55615222 | None:intergenic | 15.0% |
| !!! | ATATCTTAATTTAGTTTCAT+TGG | + | chr1_1:55616212-55616231 | Msa0029900:intron | 15.0% |
| !! | TCTTTATATGATCATAAATT+GGG | - | chr1_1:55616385-55616404 | None:intergenic | 15.0% |
| !! | TTCTTTATATGATCATAAAT+TGG | - | chr1_1:55616386-55616405 | None:intergenic | 15.0% |
| !! | ACATTGATATAAAGATTAAA+TGG | + | chr1_1:55616732-55616751 | Msa0029900:CDS | 15.0% |
| !! | CATTGATATAAAGATTAAAT+GGG | + | chr1_1:55616733-55616752 | Msa0029900:CDS | 15.0% |
| !!! | TTTTCGTATGATAAGTAAAT+AGG | + | chr1_1:55613103-55613122 | Msa0029900:intron | 20.0% |
| !! | TTTCGTATGATAAGTAAATA+GGG | + | chr1_1:55613104-55613123 | Msa0029900:intron | 20.0% |
| !! | CATTAAAAAAGTTTCTTAAC+AGG | + | chr1_1:55613412-55613431 | Msa0029900:intron | 20.0% |
| !!! | AAAAAGTTTTAAATAGGTGA+TGG | + | chr1_1:55613446-55613465 | Msa0029900:intron | 20.0% |
| !!! | AAAAGTTTTAAATAGGTGAT+GGG | + | chr1_1:55613447-55613466 | Msa0029900:intron | 20.0% |
| !! | AAAATGTCAAAACTATTCAT+GGG | - | chr1_1:55613476-55613495 | None:intergenic | 20.0% |
| !! | AAAAATGTCAAAACTATTCA+TGG | - | chr1_1:55613477-55613496 | None:intergenic | 20.0% |
| !!! | AGTTTAAGTTAAAGAGTTAA+AGG | - | chr1_1:55613766-55613785 | None:intergenic | 20.0% |
| !! | ATGTTATATTCAAATGGATA+AGG | - | chr1_1:55613871-55613890 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTATCGAAAGATT+TGG | + | chr1_1:55613892-55613911 | Msa0029900:intron | 20.0% |
| !!! | AAAATTCAAGTTAGGTTTTT+AGG | - | chr1_1:55614189-55614208 | None:intergenic | 20.0% |
| !!! | TAAAGCAAAAAATTCAAGTT+AGG | - | chr1_1:55614197-55614216 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTTATTCTTTTAG+AGG | + | chr1_1:55614206-55614225 | Msa0029900:intron | 20.0% |
| !!! | CATGTAATTTTCTTTTTGTA+GGG | - | chr1_1:55614459-55614478 | None:intergenic | 20.0% |
| !!! | ACATGTAATTTTCTTTTTGT+AGG | - | chr1_1:55614460-55614479 | None:intergenic | 20.0% |
| !! | TGAAAAGAGTAACAAAAATA+TGG | + | chr1_1:55614653-55614672 | Msa0029900:intron | 20.0% |
| !! | TAAACAAATTTGGATTAAGA+AGG | + | chr1_1:55614770-55614789 | Msa0029900:intron | 20.0% |
| !!! | AAATGCAGAATGTTTTTATA+CGG | + | chr1_1:55614803-55614822 | Msa0029900:intron | 20.0% |
| !!! | AAGTAAGGACTAAATTTTAA+AGG | + | chr1_1:55614847-55614866 | Msa0029900:intron | 20.0% |
| !!! | TTTAAAGGTCCTAATTTTAT+AGG | + | chr1_1:55614862-55614881 | Msa0029900:intron | 20.0% |
| !!! | TTAAAGGTCCTAATTTTATA+GGG | + | chr1_1:55614863-55614882 | Msa0029900:intron | 20.0% |
| !!! | GTTTACATAAGGATATTTTT+TGG | - | chr1_1:55615192-55615211 | None:intergenic | 20.0% |
| !! | ACTTGATTATAAACAAAACA+AGG | - | chr1_1:55615768-55615787 | None:intergenic | 20.0% |
| !!! | AGTTACAATTTTTTTTTTCC+AGG | + | chr1_1:55615837-55615856 | Msa0029900:intron | 20.0% |
| !!! | GTTACAATTTTTTTTTTCCA+GGG | + | chr1_1:55615838-55615857 | Msa0029900:intron | 20.0% |
| !! | TATGATCATATAAAGAAAAC+TGG | + | chr1_1:55616389-55616408 | Msa0029900:CDS | 20.0% |
| !!! | TTTCTTCTTAGTTTTCTTTA+TGG | + | chr1_1:55617505-55617524 | Msa0029900:three_prime_UTR | 20.0% |
| ! | TTCGTATGATAAGTAAATAG+GGG | + | chr1_1:55613105-55613124 | Msa0029900:intron | 25.0% |
| ! | AAGACTAAAAACATATCCAA+TGG | + | chr1_1:55613199-55613218 | Msa0029900:intron | 25.0% |
| ! | AAAAGTAAATGACTTTCCAT+TGG | - | chr1_1:55613218-55613237 | None:intergenic | 25.0% |
| !!! | TTTTTTTAGAGGTGAAGAAT+TGG | + | chr1_1:55613362-55613381 | Msa0029900:intron | 25.0% |
| !!! | TTTTTCGTTGATTCAATTGT+GGG | - | chr1_1:55613848-55613867 | None:intergenic | 25.0% |
| !!! | TTTTTGGTCCCTATAAAATT+GGG | + | chr1_1:55614388-55614407 | Msa0029900:intron | 25.0% |
| !! | TAGAAGTTCCCAATTTTATA+GGG | - | chr1_1:55614399-55614418 | None:intergenic | 25.0% |
| !! | TTAGAAGTTCCCAATTTTAT+AGG | - | chr1_1:55614400-55614419 | None:intergenic | 25.0% |
| !! | GAAATCAAATATTTTGCAGA+GGG | + | chr1_1:55614681-55614700 | Msa0029900:intron | 25.0% |
| !! | AAAACATCGCAATGAAATTT+TGG | + | chr1_1:55615490-55615509 | Msa0029900:CDS | 25.0% |
| ! | TAATTACAGCTTTACACATT+TGG | + | chr1_1:55615955-55615974 | Msa0029900:intron | 25.0% |
| !! | GAAGAAAATACTTCCATTTT+GGG | - | chr1_1:55616014-55616033 | None:intergenic | 25.0% |
| ! | CAAATAATCTCCATCAATAT+GGG | - | chr1_1:55616036-55616055 | None:intergenic | 25.0% |
| ! | TCAAATAATCTCCATCAATA+TGG | - | chr1_1:55616037-55616056 | None:intergenic | 25.0% |
| ! | TTTATGTTTAAGTATGTGCA+AGG | + | chr1_1:55616236-55616255 | Msa0029900:intron | 25.0% |
| ! | ATGTACTTGATACCTTTAAT+GGG | - | chr1_1:55616530-55616549 | None:intergenic | 25.0% |
| ! | TATGTACTTGATACCTTTAA+TGG | - | chr1_1:55616531-55616550 | None:intergenic | 25.0% |
| !!! | TAAAGGTATCAAGTACATAA+AGG | + | chr1_1:55616532-55616551 | Msa0029900:CDS | 25.0% |
| !! | ATTCCATATGATTCAAGTTT+GGG | + | chr1_1:55616628-55616647 | Msa0029900:CDS | 25.0% |
| ! | AATGACACAAGAATTAATGT+GGG | + | chr1_1:55616691-55616710 | Msa0029900:CDS | 25.0% |
| ! | TTGTAATTTCATGTGAACTT+TGG | + | chr1_1:55616842-55616861 | Msa0029900:intron | 25.0% |
| ! | AATCTCTTTTCAACATTGCT+GGG | + | chr1_1:55612757-55612776 | Msa0029900:CDS | 30.0% |
| TATAATTATCAGGGACATCA+AGG | + | chr1_1:55612979-55612998 | Msa0029900:intron | 30.0% | |
| ! | TTTGAAGCAAATTAACTCTG+AGG | + | chr1_1:55613062-55613081 | Msa0029900:CDS | 30.0% |
| GGAGTCATTGAATATTTAAC+AGG | + | chr1_1:55613383-55613402 | Msa0029900:intron | 30.0% | |
| ! | TAGATAAGAGACTTTTGATG+TGG | - | chr1_1:55613530-55613549 | None:intergenic | 30.0% |
| ATGGACAAAACACTTAGAAA+TGG | - | chr1_1:55613650-55613669 | None:intergenic | 30.0% | |
| AAGCAATATCAAAGGAAGAA+AGG | - | chr1_1:55613796-55613815 | None:intergenic | 30.0% | |
| ! | AGTGTTTGAAGCAATATCAA+AGG | - | chr1_1:55613804-55613823 | None:intergenic | 30.0% |
| !!! | GTTTTTCGTTGATTCAATTG+TGG | - | chr1_1:55613849-55613868 | None:intergenic | 30.0% |
| ! | CAGCTCTAATAGTTATTTAG+AGG | + | chr1_1:55613931-55613950 | Msa0029900:intron | 30.0% |
| !! | ATCAAGTTTTGACGAGTTTA+AGG | + | chr1_1:55614026-55614045 | Msa0029900:intron | 30.0% |
| AGCTTAATTGGTCAAAAAGA+GGG | - | chr1_1:55614063-55614082 | None:intergenic | 30.0% | |
| TAGCTTAATTGGTCAAAAAG+AGG | - | chr1_1:55614064-55614083 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGTCCCTATAAAAT+TGG | + | chr1_1:55614387-55614406 | Msa0029900:intron | 30.0% |
| ! | CGAAATCAAATATTTTGCAG+AGG | + | chr1_1:55614680-55614699 | Msa0029900:intron | 30.0% |
| ! | TTTTTGACAAGTGAGAAGAA+AGG | + | chr1_1:55615016-55615035 | Msa0029900:intron | 30.0% |
| ACATTTATATTGCACGATGA+TGG | + | chr1_1:55615234-55615253 | Msa0029900:intron | 30.0% | |
| ! | AATAGTTTGACAGGTTTTTC+AGG | - | chr1_1:55615316-55615335 | None:intergenic | 30.0% |
| AAAACCTGTCAAACTATTCA+TGG | + | chr1_1:55615318-55615337 | Msa0029900:CDS | 30.0% | |
| AAACCTGTCAAACTATTCAT+GGG | + | chr1_1:55615319-55615338 | Msa0029900:CDS | 30.0% | |
| CTTGATTATGCCTAATGATT+TGG | - | chr1_1:55615435-55615454 | None:intergenic | 30.0% | |
| CATTGAAATCATCATTGAGT+TGG | + | chr1_1:55615547-55615566 | Msa0029900:CDS | 30.0% | |
| ! | AATTCCCAGTTGATGTATAT+TGG | + | chr1_1:55615630-55615649 | Msa0029900:CDS | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | + | chr1_1:55615631-55615650 | Msa0029900:CDS | 30.0% |
| TAACCCAATATACATCAACT+GGG | - | chr1_1:55615637-55615656 | None:intergenic | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | - | chr1_1:55615638-55615657 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTCCAGGGATAAG+AGG | + | chr1_1:55615846-55615865 | Msa0029900:intron | 30.0% |
| ACATCATAATCAGCAAATTG+AGG | + | chr1_1:55615900-55615919 | Msa0029900:CDS | 30.0% | |
| !!! | TTTGTTTTGTCAACCCAAAA+TGG | + | chr1_1:55615998-55616017 | Msa0029900:intron | 30.0% |
| ! | GGAAGAAAATACTTCCATTT+TGG | - | chr1_1:55616015-55616034 | None:intergenic | 30.0% |
| ! | GTATTTTCTTCCCATATTGA+TGG | + | chr1_1:55616023-55616042 | Msa0029900:intron | 30.0% |
| CAGAATATAACAAGTTACTC+AGG | + | chr1_1:55616071-55616090 | Msa0029900:CDS | 30.0% | |
| !! | GGAAATTATGGAAGTGTTTA+AGG | + | chr1_1:55616114-55616133 | Msa0029900:CDS | 30.0% |
| !!! | TGTTTAAGGTGCTGATATTT+TGG | + | chr1_1:55616128-55616147 | Msa0029900:CDS | 30.0% |
| TCAAAATTGAGATGTCTTCT+TGG | - | chr1_1:55616361-55616380 | None:intergenic | 30.0% | |
| ! | CATTCCATATGATTCAAGTT+TGG | + | chr1_1:55616627-55616646 | Msa0029900:CDS | 30.0% |
| ! | TTCCATATGATTCAAGTTTG+GGG | + | chr1_1:55616629-55616648 | Msa0029900:CDS | 30.0% |
| !! | CATTGATTCTTCTTTGGATT+TGG | - | chr1_1:55616675-55616694 | None:intergenic | 30.0% |
| !! | TTGTGTCATTGATTCTTCTT+TGG | - | chr1_1:55616681-55616700 | None:intergenic | 30.0% |
| CAATGACACAAGAATTAATG+TGG | + | chr1_1:55616690-55616709 | Msa0029900:CDS | 30.0% | |
| AGATTAAATGGGTACGTATT+CGG | + | chr1_1:55616744-55616763 | Msa0029900:intron | 30.0% | |
| ! | TGAACTTTGGAAATTGAAGA+AGG | + | chr1_1:55616855-55616874 | Msa0029900:intron | 30.0% |
| GAAAAGTCTGTCATCATTTA+TGG | + | chr1_1:55616880-55616899 | Msa0029900:CDS | 30.0% | |
| CATTTATGGAGGTAAAGATA+AGG | + | chr1_1:55616894-55616913 | Msa0029900:CDS | 30.0% | |
| ! | TTCAATTGACCTATTTTGCT+TGG | + | chr1_1:55616987-55617006 | Msa0029900:CDS | 30.0% |
| CAAAAGTTGTTAACCACATT+TGG | - | chr1_1:55617024-55617043 | None:intergenic | 30.0% | |
| ! | CAAATGTGGTTAACAACTTT+TGG | + | chr1_1:55617022-55617041 | Msa0029900:CDS | 30.0% |
| !! | GGTTAACAACTTTTGGAAAA+AGG | + | chr1_1:55617029-55617048 | Msa0029900:CDS | 30.0% |
| TTTCTTACAAGAATGAGACT+GGG | + | chr1_1:55617121-55617140 | Msa0029900:CDS | 30.0% | |
| ATCTTTCCATTTGTCAAACT+CGG | - | chr1_1:55617217-55617236 | None:intergenic | 30.0% | |
| AAAGATGTCGCAATCAATAA+AGG | + | chr1_1:55617231-55617250 | Msa0029900:CDS | 30.0% | |
| ATTTAGAGAACATCATCACA+AGG | + | chr1_1:55617266-55617285 | Msa0029900:CDS | 30.0% | |
| CATTGACCTTATCCATATTA+TGG | - | chr1_1:55617416-55617435 | None:intergenic | 30.0% | |
| CATAATATGGATAAGGTCAA+TGG | + | chr1_1:55617414-55617433 | Msa0029900:CDS | 30.0% | |
| TCACAAATGCAACTAGAATA+AGG | + | chr1_1:55617617-55617636 | Msa0029900:three_prime_UTR | 30.0% | |
| ! | CATCAAACTTAGTGTCACTA+TGG | - | chr1_1:55612734-55612753 | None:intergenic | 35.0% |
| ! | GAATCTCTTTTCAACATTGC+TGG | + | chr1_1:55612756-55612775 | Msa0029900:CDS | 35.0% |
| CAGAACGTTATCAACAACAT+GGG | - | chr1_1:55612802-55612821 | None:intergenic | 35.0% | |
| ATTTGCTTCAAAGTACACAG+CGG | - | chr1_1:55613054-55613073 | None:intergenic | 35.0% | |
| TTGTGGGCTTATTTGAGAAA+AGG | - | chr1_1:55613832-55613851 | None:intergenic | 35.0% | |
| TTAGAGCTGTAGCAAAGAAT+TGG | - | chr1_1:55613920-55613939 | None:intergenic | 35.0% | |
| TATAAAAGAGGGCAAAAGCT+CGG | + | chr1_1:55614336-55614355 | Msa0029900:intron | 35.0% | |
| TTCAGCGTAGATCTTTCTTA+AGG | + | chr1_1:55615120-55615139 | Msa0029900:intron | 35.0% | |
| TCAGCGTAGATCTTTCTTAA+GGG | + | chr1_1:55615121-55615140 | Msa0029900:intron | 35.0% | |
| ! | AACTATTCATGGGTTGCAAA+AGG | + | chr1_1:55615329-55615348 | Msa0029900:CDS | 35.0% |
| ACAATTTGATCAAGGCAACT+TGG | + | chr1_1:55615519-55615538 | Msa0029900:CDS | 35.0% | |
| CTGAGTAACAATTGCAACAA+TGG | - | chr1_1:55615666-55615685 | None:intergenic | 35.0% | |
| ! | AGGCAGGATTTATCTCATTT+TGG | + | chr1_1:55615866-55615885 | Msa0029900:CDS | 35.0% |
| TCACAATGCACTATACAGAT+TGG | + | chr1_1:55615932-55615951 | Msa0029900:CDS | 35.0% | |
| AACACTTCCATAATTTCCGT+CGG | - | chr1_1:55616112-55616131 | None:intergenic | 35.0% | |
| TTAGTCGAACCATCATAGAT+GGG | - | chr1_1:55616172-55616191 | None:intergenic | 35.0% | |
| TTTAGTCGAACCATCATAGA+TGG | - | chr1_1:55616173-55616192 | None:intergenic | 35.0% | |
| TGTTTAAGTATGTGCAAGGT+TGG | + | chr1_1:55616240-55616259 | Msa0029900:intron | 35.0% | |
| !! | TATCGAAGTGCTGAAAAAGA+AGG | + | chr1_1:55616301-55616320 | Msa0029900:CDS | 35.0% |
| GTTCTTGTTCATTTCAACTC+TGG | + | chr1_1:55616328-55616347 | Msa0029900:CDS | 35.0% | |
| AAGTGATGCAAAACATACCA+AGG | - | chr1_1:55616503-55616522 | None:intergenic | 35.0% | |
| AGGTATCAAGTACATAAAGG+AGG | + | chr1_1:55616535-55616554 | Msa0029900:CDS | 35.0% | |
| GGACTCAACACAAGAAATAA+AGG | - | chr1_1:55616581-55616600 | None:intergenic | 35.0% | |
| TGATGTAGAATCTTTCCTTG+TGG | - | chr1_1:55616602-55616621 | None:intergenic | 35.0% | |
| ! | ATTCAAGTTTGGGGAGTAAA+GGG | + | chr1_1:55616638-55616657 | Msa0029900:CDS | 35.0% |
| ! | CTTCTTTGGATTTGGAGTAA+GGG | - | chr1_1:55616667-55616686 | None:intergenic | 35.0% |
| ! | TCTTCTTTGGATTTGGAGTA+AGG | - | chr1_1:55616668-55616687 | None:intergenic | 35.0% |
| ! | ACTTTGGAAATTGAAGAAGG+AGG | + | chr1_1:55616858-55616877 | Msa0029900:intron | 35.0% |
| AAGTCTGTCATCATTTATGG+AGG | + | chr1_1:55616883-55616902 | Msa0029900:CDS | 35.0% | |
| ATGGAGGTAAAGATAAGGAA+TGG | + | chr1_1:55616899-55616918 | Msa0029900:CDS | 35.0% | |
| CAACAATTCACTAAGTATGC+TGG | + | chr1_1:55616925-55616944 | Msa0029900:CDS | 35.0% | |
| !! | GTTTGTTTTCTCATGCATCT+TGG | - | chr1_1:55617073-55617092 | None:intergenic | 35.0% |
| AACAAACACTGTTACACAAC+AGG | + | chr1_1:55617086-55617105 | Msa0029900:CDS | 35.0% | |
| CTTTCTTACAAGAATGAGAC+TGG | + | chr1_1:55617120-55617139 | Msa0029900:CDS | 35.0% | |
| AAGGTGAGAGCAAATATGAA+CGG | - | chr1_1:55617301-55617320 | None:intergenic | 35.0% | |
| TAATGAACACTTCCATTGTG+CGG | - | chr1_1:55617380-55617399 | None:intergenic | 35.0% | |
| ! | CTACAAGTGTTGCCATAATA+TGG | + | chr1_1:55617401-55617420 | Msa0029900:CDS | 35.0% |
| GTGTTGCCATAATATGGATA+AGG | + | chr1_1:55617407-55617426 | Msa0029900:CDS | 35.0% | |
| TGTGAATAAGTGATCGCACT+AGG | - | chr1_1:55612629-55612648 | None:intergenic | 40.0% | |
| GTGCGATCACTTATTCACAT+TGG | + | chr1_1:55612630-55612649 | Msa0029900:CDS | 40.0% | |
| CAGACATGGTTAAAGGGTTA+TGG | - | chr1_1:55612674-55612693 | None:intergenic | 40.0% | |
| GCTCATCAGACATGGTTAAA+GGG | - | chr1_1:55612680-55612699 | None:intergenic | 40.0% | |
| TGCTCATCAGACATGGTTAA+AGG | - | chr1_1:55612681-55612700 | None:intergenic | 40.0% | |
| CAAAATGTGCTCATCAGACA+TGG | - | chr1_1:55612688-55612707 | None:intergenic | 40.0% | |
| ! | CATGTCTGATGAGCACATTT+TGG | + | chr1_1:55612686-55612705 | Msa0029900:CDS | 40.0% |
| GCAGAACGTTATCAACAACA+TGG | - | chr1_1:55612803-55612822 | None:intergenic | 40.0% | |
| AATTATCAGGGACATCAAGG+AGG | + | chr1_1:55612982-55613001 | Msa0029900:intron | 40.0% | |
| ! | GTGGATTAATGTTATCCAGG+TGG | - | chr1_1:55613014-55613033 | None:intergenic | 40.0% |
| !! | CTGGTGGATTAATGTTATCC+AGG | - | chr1_1:55613017-55613036 | None:intergenic | 40.0% |
| TCTCCCTCTCTAATAACAAC+TGG | + | chr1_1:55613272-55613291 | Msa0029900:intron | 40.0% | |
| ! | GGTCCAGTTGTTATTAGAGA+GGG | - | chr1_1:55613278-55613297 | None:intergenic | 40.0% |
| ! | AGATGTGCAGCTAGCTTAAT+TGG | - | chr1_1:55614075-55614094 | None:intergenic | 40.0% |
| TAACCTGAGTTTGTCTAACG+TGG | + | chr1_1:55614250-55614269 | Msa0029900:intron | 40.0% | |
| !! | TTGTATGCTATTTCCTCACC+TGG | - | chr1_1:55615278-55615297 | None:intergenic | 40.0% |
| CAACCCATGAATAGTTTGAC+AGG | - | chr1_1:55615325-55615344 | None:intergenic | 40.0% | |
| GAACCACTTGCCAAATCATT+AGG | + | chr1_1:55615422-55615441 | Msa0029900:CDS | 40.0% | |
| ! | ATGCCTAATGATTTGGCAAG+TGG | - | chr1_1:55615428-55615447 | None:intergenic | 40.0% |
| !!! | CGATGTTTTTTCAGTGCTTC+AGG | - | chr1_1:55615479-55615498 | None:intergenic | 40.0% |
| GGAGCTCAACAATTTGATCA+AGG | + | chr1_1:55615511-55615530 | Msa0029900:CDS | 40.0% | |
| !! | AGCACTGATGTGATACATCA+TGG | + | chr1_1:55615727-55615746 | Msa0029900:intron | 40.0% |
| ACACTTCCATAATTTCCGTC+GGG | - | chr1_1:55616111-55616130 | None:intergenic | 40.0% | |
| TGATGGTTCGACTAAAACAC+TGG | + | chr1_1:55616177-55616196 | Msa0029900:CDS | 40.0% | |
| AAGCCAACACAAGATTGTGT+GGG | + | chr1_1:55616412-55616431 | Msa0029900:CDS | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | - | chr1_1:55616440-55616459 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | - | chr1_1:55616441-55616460 | None:intergenic | 40.0% | |
| !! | CTTTGAAGTCAAAGATGCCT+TGG | + | chr1_1:55616483-55616502 | Msa0029900:CDS | 40.0% |
| CATCACTTTGCACCCATTAA+AGG | + | chr1_1:55616515-55616534 | Msa0029900:CDS | 40.0% | |
| TTTCTTGTGTTGAGTCCACA+AGG | + | chr1_1:55616584-55616603 | Msa0029900:CDS | 40.0% | |
| CTCCCCAAACTTGAATCATA+TGG | - | chr1_1:55616634-55616653 | None:intergenic | 40.0% | |
| ! | GATTCAAGTTTGGGGAGTAA+AGG | + | chr1_1:55616637-55616656 | Msa0029900:CDS | 40.0% |
| TATATCAATGTCAGCCAGCA+GGG | - | chr1_1:55616723-55616742 | None:intergenic | 40.0% | |
| TTATATCAATGTCAGCCAGC+AGG | - | chr1_1:55616724-55616743 | None:intergenic | 40.0% | |
| ! | AATAGCGGCATCATTTGCTA+GGG | - | chr1_1:55616953-55616972 | None:intergenic | 40.0% |
| TAATAGCGGCATCATTTGCT+AGG | - | chr1_1:55616954-55616973 | None:intergenic | 40.0% | |
| AGTCTTCGTCTGCTTAATAG+CGG | - | chr1_1:55616968-55616987 | None:intergenic | 40.0% | |
| GTTGAGACTCCAAGCAAAAT+AGG | - | chr1_1:55616999-55617018 | None:intergenic | 40.0% | |
| TTACAAGAATGAGACTGGGT+GGG | + | chr1_1:55617125-55617144 | Msa0029900:CDS | 40.0% | |
| AGAAGTCACAATAGACCCTT+TGG | - | chr1_1:55617160-55617179 | None:intergenic | 40.0% | |
| ATTGTGACTTCTGTTGGTCA+TGG | + | chr1_1:55617168-55617187 | Msa0029900:CDS | 40.0% | |
| TTGTGACTTCTGTTGGTCAT+GGG | + | chr1_1:55617169-55617188 | Msa0029900:CDS | 40.0% | |
| CAGCAACATTAGGAATCTCA+AGG | - | chr1_1:55617320-55617339 | None:intergenic | 40.0% | |
| CTTGAGATTCCTAATGTTGC+TGG | + | chr1_1:55617318-55617337 | Msa0029900:CDS | 40.0% | |
| ! | GGGATTTTTCCAGCAACATT+AGG | - | chr1_1:55617330-55617349 | None:intergenic | 40.0% |
| CTGGACACTCGATAAAATCT+GGG | - | chr1_1:55617350-55617369 | None:intergenic | 40.0% | |
| TCTGGACACTCGATAAAATC+TGG | - | chr1_1:55617351-55617370 | None:intergenic | 40.0% | |
| GCTTCATGGGTATTTAGCAT+TGG | + | chr1_1:55617450-55617469 | Msa0029900:three_prime_UTR | 40.0% | |
| ACTCATGGCTACATTGCTTA+AGG | - | chr1_1:55617570-55617589 | None:intergenic | 40.0% | |
| TGTGATCTCACTGTGATCAA+CGG | - | chr1_1:55617602-55617621 | None:intergenic | 40.0% | |
| ! | CAACATGGGTTGAACGTGTA+AGG | - | chr1_1:55612788-55612807 | None:intergenic | 45.0% |
| ! | GGGTCCAGTTGTTATTAGAG+AGG | - | chr1_1:55613279-55613298 | None:intergenic | 45.0% |
| ATGATGGCAGATGTCATGCA+AGG | + | chr1_1:55615250-55615269 | Msa0029900:intron | 45.0% | |
| !! | TCTGCTTTTGCCCTTGAGTA+TGG | + | chr1_1:55615365-55615384 | Msa0029900:CDS | 45.0% |
| CCAGAAGTCTCCATACTCAA+GGG | - | chr1_1:55615378-55615397 | None:intergenic | 45.0% | |
| ACCAGAAGTCTCCATACTCA+AGG | - | chr1_1:55615379-55615398 | None:intergenic | 45.0% | |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | - | chr1_1:55615419-55615438 | None:intergenic | 45.0% |
| !! | GCTTCAGGCTTTGAAAGTTG+AGG | - | chr1_1:55615464-55615483 | None:intergenic | 45.0% |
| ACTGGGAATTGTTCCAAAGC+TGG | - | chr1_1:55615620-55615639 | None:intergenic | 45.0% | |
| ! | TTTTTCCAGGGATAAGAGGC+AGG | + | chr1_1:55615850-55615869 | Msa0029900:intron | 45.0% |
| TAAATCCTGCCTCTTATCCC+TGG | - | chr1_1:55615858-55615877 | None:intergenic | 45.0% | |
| TCAAACCCCGACGGAAATTA+TGG | + | chr1_1:55616102-55616121 | Msa0029900:CDS | 45.0% | |
| CACTTCCATAATTTCCGTCG+GGG | - | chr1_1:55616110-55616129 | None:intergenic | 45.0% | |
| ! | CCATCATAGATGGGAGCTTT+TGG | - | chr1_1:55616163-55616182 | None:intergenic | 45.0% |
| CCAAAAGCTCCCATCTATGA+TGG | + | chr1_1:55616160-55616179 | Msa0029900:CDS | 45.0% | |
| GAAGCCAACACAAGATTGTG+TGG | + | chr1_1:55616411-55616430 | Msa0029900:CDS | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | - | chr1_1:55616418-55616437 | None:intergenic | 45.0% | |
| CTTACAAGAATGAGACTGGG+TGG | + | chr1_1:55617124-55617143 | Msa0029900:CDS | 45.0% | |
| GGTGGGCAATTGTAACCAAA+GGG | + | chr1_1:55617142-55617161 | Msa0029900:CDS | 45.0% | |
| GGGTCTATTGTGACTTCTGT+TGG | + | chr1_1:55617162-55617181 | Msa0029900:CDS | 45.0% | |
| CAGTGTCCGAGTTTGACAAA+TGG | + | chr1_1:55617208-55617227 | Msa0029900:CDS | 45.0% | |
| TAAGGTCAATGGCGAGCATT+AGG | + | chr1_1:55617425-55617444 | Msa0029900:CDS | 45.0% | |
| CGAGCATTAGGTAGCTTCAT+GGG | + | chr1_1:55617437-55617456 | Msa0029900:exon | 45.0% | |
| CAACGGTAATGCAAGACTCA+TGG | - | chr1_1:55617585-55617604 | None:intergenic | 45.0% | |
| !! | AATTATATACATTTATTTAT+GGG | - | chr1_1:55613505-55613524 | None:intergenic | 5.0% |
| !! | TAATTATATACATTTATTTA+TGG | - | chr1_1:55613506-55613525 | None:intergenic | 5.0% |
| !!! | ATTATAACTTTTATTTTAAA+TGG | - | chr1_1:55613981-55614000 | None:intergenic | 5.0% |
| !! | TTTAGTAAAATAAAAAAAAT+TGG | + | chr1_1:55614313-55614332 | Msa0029900:intron | 5.0% |
| !! | TTTCATTATTATAAAATTTA+GGG | - | chr1_1:55614906-55614925 | None:intergenic | 5.0% |
| !!! | TTTTCATTATTATAAAATTT+AGG | - | chr1_1:55614907-55614926 | None:intergenic | 5.0% |
| !!! | AAATTTTATAATAATGAAAA+TGG | + | chr1_1:55614907-55614926 | Msa0029900:intron | 5.0% |
| !! | AATATTAAAATTTACTAAAA+AGG | + | chr1_1:55614939-55614958 | Msa0029900:intron | 5.0% |
| GGTCCACGTTAGACAAACTC+AGG | - | chr1_1:55614256-55614275 | None:intergenic | 50.0% | |
| TAACGTGGACCTCCGAAGAA+AGG | + | chr1_1:55614265-55614284 | Msa0029900:intron | 50.0% | |
| AACGTGGACCTCCGAAGAAA+GGG | + | chr1_1:55614266-55614285 | Msa0029900:intron | 50.0% | |
| TCCGAAGAAAGGGGTCCAAA+GGG | + | chr1_1:55614276-55614295 | Msa0029900:intron | 50.0% | |
| TCCCTTTGGACCCCTTTCTT+CGG | - | chr1_1:55614280-55614299 | None:intergenic | 50.0% | |
| AATTGACAAGGGCCTCCCTT+TGG | - | chr1_1:55614294-55614313 | None:intergenic | 50.0% | |
| CCCTTGAGTATGGAGACTTC+TGG | + | chr1_1:55615375-55615394 | Msa0029900:CDS | 50.0% | |
| ! | TGGCAAGTGGTTCTGTTGGT+TGG | - | chr1_1:55615415-55615434 | None:intergenic | 50.0% |
| CAACTCGCGTCATGACATCA+AGG | + | chr1_1:55615577-55615596 | Msa0029900:CDS | 50.0% | |
| GAAGCTCTTTCAAACCCCGA+CGG | + | chr1_1:55616093-55616112 | Msa0029900:CDS | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | + | chr1_1:55616424-55616443 | Msa0029900:CDS | 50.0% | |
| !! | AATGTGGGTTGATTCCCTGC+TGG | + | chr1_1:55616706-55616725 | Msa0029900:CDS | 50.0% |
| GGAGTCTCAACAGCCAAATG+TGG | + | chr1_1:55617008-55617027 | Msa0029900:CDS | 50.0% | |
| GGGTGGGCAATTGTAACCAA+AGG | + | chr1_1:55617141-55617160 | Msa0029900:CDS | 50.0% | |
| TCCAGATTGTCACCGCACAA+TGG | + | chr1_1:55617365-55617384 | Msa0029900:CDS | 50.0% | |
| TCCATTGTGCGGTGACAATC+TGG | - | chr1_1:55617369-55617388 | None:intergenic | 50.0% | |
| GCGAGCATTAGGTAGCTTCA+TGG | + | chr1_1:55617436-55617455 | Msa0029900:exon | 50.0% | |
| TCAGGGACATCAAGGAGGTC+TGG | + | chr1_1:55612987-55613006 | Msa0029900:intron | 55.0% | |
| GGTGAAGTGAAGCTAGCTGG+TGG | - | chr1_1:55613033-55613052 | None:intergenic | 55.0% | |
| AGCGGTGAAGTGAAGCTAGC+TGG | - | chr1_1:55613036-55613055 | None:intergenic | 55.0% | |
| ACGTGGACCTCCGAAGAAAG+GGG | + | chr1_1:55614267-55614286 | Msa0029900:intron | 55.0% | |
| CTTTGGACCCCTTTCTTCGG+AGG | - | chr1_1:55614277-55614296 | None:intergenic | 55.0% | |
| CTCCGAAGAAAGGGGTCCAA+AGG | + | chr1_1:55614275-55614294 | Msa0029900:intron | 55.0% | |
| GAAGAAAGGGGTCCAAAGGG+AGG | + | chr1_1:55614279-55614298 | Msa0029900:intron | 55.0% | |
| ! | CAGATGTCATGCAAGGCACC+AGG | + | chr1_1:55615257-55615276 | Msa0029900:intron | 55.0% |
| TCCAGCTCTTGCACCAGCTT+TGG | + | chr1_1:55615604-55615623 | Msa0029900:CDS | 55.0% | |
| TCCAAAGCTGGTGCAAGAGC+TGG | - | chr1_1:55615608-55615627 | None:intergenic | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | + | chr1_1:55616427-55616446 | Msa0029900:CDS | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | + | chr1_1:55616432-55616451 | Msa0029900:CDS | 55.0% | |
| TCAAGGAGGTCTGGACCACC+TGG | + | chr1_1:55612996-55613015 | Msa0029900:CDS | 60.0% | |
| ! | GTCATGCAAGGCACCAGGTG+AGG | + | chr1_1:55615262-55615281 | Msa0029900:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 55612618 | 55617694 | 55612618 | ID=Msa0029900;Name=Msa0029900 |
| chr1_1 | mRNA | 55612618 | 55617694 | 55612618 | ID=Msa0029900-mRNA-1;Parent=Msa0029900;Name=Msa0029900-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.83|0.85|1|1|1|7|248|669 |
| chr1_1 | exon | 55612618 | 55612824 | 55612618 | ID=Msa0029900-mRNA-1:exon:16615;Parent=Msa0029900-mRNA-1 |
| chr1_1 | exon | 55612991 | 55613083 | 55612991 | ID=Msa0029900-mRNA-1:exon:16616;Parent=Msa0029900-mRNA-1 |
| chr1_1 | exon | 55615260 | 55615708 | 55615260 | ID=Msa0029900-mRNA-1:exon:16617;Parent=Msa0029900-mRNA-1 |
| chr1_1 | exon | 55615859 | 55615953 | 55615859 | ID=Msa0029900-mRNA-1:exon:16618;Parent=Msa0029900-mRNA-1 |
| chr1_1 | exon | 55616065 | 55616198 | 55616065 | ID=Msa0029900-mRNA-1:exon:16619;Parent=Msa0029900-mRNA-1 |
| chr1_1 | exon | 55616296 | 55616754 | 55616296 | ID=Msa0029900-mRNA-1:exon:16620;Parent=Msa0029900-mRNA-1 |
| chr1_1 | exon | 55616874 | 55617694 | 55616874 | ID=Msa0029900-mRNA-1:exon:16621;Parent=Msa0029900-mRNA-1 |
| chr1_1 | CDS | 55612618 | 55612824 | 55612618 | ID=Msa0029900-mRNA-1:cds;Parent=Msa0029900-mRNA-1 |
| chr1_1 | CDS | 55612991 | 55613083 | 55612991 | ID=Msa0029900-mRNA-1:cds;Parent=Msa0029900-mRNA-1 |
| chr1_1 | CDS | 55615260 | 55615708 | 55615260 | ID=Msa0029900-mRNA-1:cds;Parent=Msa0029900-mRNA-1 |
| chr1_1 | CDS | 55615859 | 55615953 | 55615859 | ID=Msa0029900-mRNA-1:cds;Parent=Msa0029900-mRNA-1 |
| chr1_1 | CDS | 55616065 | 55616198 | 55616065 | ID=Msa0029900-mRNA-1:cds;Parent=Msa0029900-mRNA-1 |
| chr1_1 | CDS | 55616296 | 55616754 | 55616296 | ID=Msa0029900-mRNA-1:cds;Parent=Msa0029900-mRNA-1 |
| chr1_1 | CDS | 55616874 | 55617446 | 55616874 | ID=Msa0029900-mRNA-1:cds;Parent=Msa0029900-mRNA-1 |
| chr1_1 | three_prime_UTR | 55617447 | 55617694 | 55617447 | ID=Msa0029900-mRNA-1:three_prime_utr;Parent=Msa0029900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
