AlfalfaGEDB | Msa0169920

M. sativa cultivar zhongmu-4 / Msa0169920

KEGG: -
GO: -
PFAM: PF14576.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169920	XP_003590763.1	96.413	669	24	0	1	669	1	669	0.0	1328

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169920	sp\|Q9SS87\|SEOB_ARATH	31.300	623	349	21	109	661	116	729	3.60e-87	291

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169920	E2FKJ5	96.413	669	24	0	1	669	1	669	0.0	1328

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002930	Msa0169920	0.802394	5.728164e-49	-8.615850e-47
Msa0007080	Msa0169920	0.808985	2.366019e-50	-8.615850e-47
Msa0017510	Msa0169920	0.828885	7.009780e-55	-8.615850e-47
Msa0029880	Msa0169920	0.844036	9.692817e-59	-8.615850e-47
Msa0029890	Msa0169920	0.836208	1.070936e-56	-8.615850e-47
Msa0029900	Msa0169920	0.903414	3.557432e-79	-8.615850e-47
Msa0029910	Msa0169920	0.967665	1.365746e-127	-8.615850e-47
Msa0040450	Msa0169920	0.811068	8.422922e-51	-8.615850e-47
Msa0068680	Msa0169920	0.803674	3.113738e-49	-8.615850e-47
Msa0077120	Msa0169920	0.938207	9.854358e-99	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169920	MtrunA17_Chr1g0186851	96.413	669	24	0	1	669	1	669	0.0	1328
Msa0169920	MtrunA17_Chr1g0186861	81.928	664	118	1	1	662	1	664	0.0	1126
Msa0169920	MtrunA17_Chr1g0187041	77.061	667	151	1	1	665	1	667	0.0	1036
Msa0169920	MtrunA17_Chr1g0186911	83.274	562	94	0	101	662	1	562	0.0	971
Msa0169920	MtrunA17_Chr1g0186841	58.383	668	270	6	5	669	9	671	0.0	801
Msa0169920	MtrunA17_Chr1g0165791	35.232	667	408	10	20	668	25	685	2.72e-142	431
Msa0169920	MtrunA17_Chr7g0226571	33.862	694	400	19	24	663	25	713	1.19e-110	350
Msa0169920	MtrunA17_Chr1g0187001	31.947	673	397	16	20	668	11	646	2.04e-102	326
Msa0169920	MtrunA17_Chr1g0186991	30.700	671	406	17	20	663	31	669	2.86e-99	318
Msa0169920	MtrunA17_Chr8g0381301	30.484	702	428	22	13	660	8	703	1.14e-95	310

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169920	AT3G01680.1	31.300	623	349	21	109	661	116	729	3.66e-88	291
Msa0169920	AT3G01670.1	25.424	708	437	23	22	659	134	820	7.41e-53	196
Msa0169920	AT3G01670.2	25.424	708	437	23	22	659	158	844	8.44e-53	196
Msa0169920	AT1G67790.1	24.378	603	398	19	96	657	79	664	2.37e-40	157

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Find 155 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCGCAATGAAATTT+TGG	0.167607	1_4:-53471285	Msa0169920:CDS
AAAACCTGTCAAACTATTCA+TGG	0.362097	1_4:-53471457	Msa0169920:CDS
AAAATGCAATAATTAAACAT+AGG	0.573094	1_4:+53469290	None:intergenic
AAAATTACTCTTGTGGGTTA+TGG	0.300184	1_4:+53474870	None:intergenic
AAACCTGTCAAACTATTCAT+GGG	0.575469	1_4:-53471456	Msa0169920:CDS
AAAGATGTGGCGATCAATAA+GGG	0.468286	1_4:-53469544	Msa0169920:CDS
AACAAACACTGTTACACAAC+AGG	0.447051	1_4:-53469689	Msa0169920:CDS
AACACTTCCATAATTTCCGT+CGG	0.557817	1_4:+53470665	None:intergenic
AACTATTCATGGGTTGCAAA+AGG	0.472460	1_4:-53471446	Msa0169920:CDS
AAGCCAACACAAGATTGTGT+GGG	0.670390	1_4:-53470362	Msa0169920:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCACTAAAATTACTCTTGT+GGG	+	chr1_4:53469133-53469152	None:intergenic	30.0%
TGAAATGTAACTTCAGCAAA+AGG	-	chr1_4:53469575-53469594	Msa0169920:CDS	30.0%
ATATCTAAACCGTGTAACTT+GGG	+	chr1_4:53469647-53469666	None:intergenic	30.0%
TTACACGGTTTAGATATCTT+GGG	-	chr1_4:53469650-53469669	Msa0169920:CDS	30.0%
TTGATCTACTCTTCTTACAA+CGG	+	chr1_4:53470146-53470165	None:intergenic	30.0%
TGTAAGAAGAGTAGATCAAA+TGG	-	chr1_4:53470147-53470166	Msa0169920:CDS	30.0%
ATTTCTCTAATGGTTCTCTT+AGG	+	chr1_4:53470205-53470224	None:intergenic	30.0%
AATCATTCGAAAAGGTTTAG+AGG	-	chr1_4:53470222-53470241	Msa0169920:CDS	30.0%
CCGAGAGATATATTAAAAGT+TGG	+	chr1_4:53470385-53470404	None:intergenic	30.0%
TATAATTATCAGGGACATCA+AGG	-	chr1_4:53470452-53470471	Msa0169920:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	53469085	53474931	53469085	ID=Msa0169920;Name=Msa0169920
chr1_4	mRNA	53469085	53474931	53469085	ID=Msa0169920-mRNA-1;Parent=Msa0169920;Name=Msa0169920-mRNA-1;_AED=0.06;_eAED=0.06;_QI=89\|1\|1\|1\|0.71\|0.87\|8\|246\|669
chr1_4	exon	53469085	53469330	53469085	ID=Msa0169920-mRNA-1:exon:15917;Parent=Msa0169920-mRNA-1
chr1_4	exon	53469351	53469923	53469351	ID=Msa0169920-mRNA-1:exon:15916;Parent=Msa0169920-mRNA-1
chr1_4	exon	53470042	53470500	53470042	ID=Msa0169920-mRNA-1:exon:15915;Parent=Msa0169920-mRNA-1
chr1_4	exon	53470598	53470731	53470598	ID=Msa0169920-mRNA-1:exon:15914;Parent=Msa0169920-mRNA-1
chr1_4	exon	53470845	53470939	53470845	ID=Msa0169920-mRNA-1:exon:15913;Parent=Msa0169920-mRNA-1
chr1_4	exon	53471089	53471537	53471089	ID=Msa0169920-mRNA-1:exon:15912;Parent=Msa0169920-mRNA-1
chr1_4	exon	53473460	53473552	53473460	ID=Msa0169920-mRNA-1:exon:15911;Parent=Msa0169920-mRNA-1
chr1_4	exon	53474636	53474931	53474636	ID=Msa0169920-mRNA-1:exon:15910;Parent=Msa0169920-mRNA-1
chr1_4	five_prime_UTR	53474843	53474931	53474843	ID=Msa0169920-mRNA-1:five_prime_utr;Parent=Msa0169920-mRNA-1
chr1_4	CDS	53474636	53474842	53474636	ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1
chr1_4	CDS	53473460	53473552	53473460	ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1
chr1_4	CDS	53471089	53471537	53471089	ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1
chr1_4	CDS	53470845	53470939	53470845	ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1
chr1_4	CDS	53470598	53470731	53470598	ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1
chr1_4	CDS	53470042	53470500	53470042	ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1
chr1_4	CDS	53469351	53469923	53469351	ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1
chr1_4	three_prime_UTR	53469085	53469330	53469085	ID=Msa0169920-mRNA-1:three_prime_utr;Parent=Msa0169920-mRNA-1

Gene Sequence

>Msa0169920

ATGGTTAGCCTAGTGCGATCACTTATTCACATTGGTAATGATAATAGCATTGACCATAACCATTTAACCATGTCTGATGAGCACATTTTGGAAGAGATTTATGTAACTCATGTCCATAGTGACACTAAATTTGATGCTGAATCTTTTTTCAACATTGCTGGGAACATCCTTACACGTTCAACCCATGTTGTTGATAACGTTCTGCACGGACATCAAGGAGGTCTGGACCACCTGGATAACATTAATCCACCAGCTAGCTTCACTTCACCGCTGTGTACTTTGAAGCAAATTAACTCTGAGATGTCATGCAAGGCACCAGGTGAGGAAATAGCTTACAAAACAACATTAGCAATCCTAAAAAACCTGTCAAACTATTCATGGGTTGCAAAAGGAGTGCTTACTCTTTCTGCTTTTGCCCTTGAGTATGGAGATTTCTGGCTGTTATCACAGAACCAACCAACAGAACCACTTGCCAAATCATTAGGCATAATCAAGAGAGTTCCTCAACTTTCGAAGCCTGAAGCATTGAAAAAACATCGCAATGAAATTTTGGAGCTCAAGAATTTGATCAAGGCAACTTGGCAAGTCATTGAAATCATCATTGAGTTGGAAAGACTCAACTCGCGTCATGACATCAAGGAAGTTCCAGCTCTTGCACCAGCTTTGGAACAATTCCCAGTTGATGTATATTGGGTTATCATCACCATTGTTGCAATTGTTGCTCAGTTTGAATGTCTCACTACTAATTCGGATAAGAGGCAGAATTTATCTCATTTTGGTCAAAAGATTAACATCATAATCAGCAAATTGAGGAAGCATTTGTCACAATGCACTATACAGATTGATGAAGCAGAGTATAACAAGTTACTCAGGAAGCTCTTTCAAACCCCGACGGAAATTATGGAAGTGTTTAAGGTTTTAATTTTCTGGAAAGACACTCCAAAAGCTCCCATCTATGATGGTTCGACTAAAACACTGGTTAATATCGAAGTGCTGAAAAAGAAGGACGTGTTCTTGTTCATTTCAACTCTGGACATAAGCCAAGAAGACATCTCAATTTTGATCCCAATTTATGATCATATAAAGAAAACTGGAAGCCAACACAAGATTGTGTGGGTTCCCATTGTGGAGGAATGGAATGATAAGTTGAAGAAAAAATTTGATTCTTTGAAGTCAAAGATGCCTTGGTATGTTTTGCATCACTTTGCACCCATTAAAGGTATCAAGTACATAAAGGAGGAGTTGCATTTCAAGCAGAAGCCTTTATTTCTTGTGTTGAGTCCACAAGGAAAGATTCTACATCAGAATGCATTCCATATGATTCAAGTTTGGGGAGTAAAGGGCTTCCCTTACTCCAAATCCAAAGAAGAATCAATGACACAAGAATTAATGTGGGTTGATTCCCTGCTGGCTGACATTGATATAAATATTAAATGGAAGGAGGAAAAGTCTGTCATCATTTATGGAGGTAAAGATAAGGAATGGATTCAACAATTCACTAAGTATGCTGGCGCCCTAGCAAATGATGCCGCTATTAAGCAGACGAAGACTTCAATTGACCTATTTTGCTTGGAGTCTCAACAGCCAAATGTGGTTAACAACTTTTGGAAAAAGGTAGAAAGTTTGTTTGTGACCAAGATGCATGAGAAAACAAACACTGTTACACAACAGGTTGAGAAATTGCTTTCTTACAAGAATGAGACTGGGTGGGCAATTGTAACCAAAGGGTCTATTGTGACTTCTGTTGATCATGGGACAACAGTTCTGAAGACAGTGTCCGAGTTTGACAAATGGAAAGATGTGGCGATCAATAAGGGCTTTGAGTTCGCATTTAGAGAACATCATCACAAGGTTGCTAGTACCGTTCATATTTGCTCTCACCTAGAGATTCCCAATATTGCTGGAAAAATTCCAGATTTTATCGAGTGTCCAGATTGTCACCGCGCAATGGAAGTGTTTATTAGCTACAAGTGTTGCCATAACGGCGATAAGGCCAATGGCAAGCATTAG

Protein sequence

>Msa0169920

MVSLVRSLIHIGNDNSIDHNHLTMSDEHILEEIYVTHVHSDTKFDAESFFNIAGNILTRSTHVVDNVLHGHQGGLDHLDNINPPASFTSPLCTLKQINSEMSCKAPGEEIAYKTTLAILKNLSNYSWVAKGVLTLSAFALEYGDFWLLSQNQPTEPLAKSLGIIKRVPQLSKPEALKKHRNEILELKNLIKATWQVIEIIIELERLNSRHDIKEVPALAPALEQFPVDVYWVIITIVAIVAQFECLTTNSDKRQNLSHFGQKINIIISKLRKHLSQCTIQIDEAEYNKLLRKLFQTPTEIMEVFKVLIFWKDTPKAPIYDGSTKTLVNIEVLKKKDVFLFISTLDISQEDISILIPIYDHIKKTGSQHKIVWVPIVEEWNDKLKKKFDSLKSKMPWYVLHHFAPIKGIKYIKEELHFKQKPLFLVLSPQGKILHQNAFHMIQVWGVKGFPYSKSKEESMTQELMWVDSLLADIDINIKWKEEKSVIIYGGKDKEWIQQFTKYAGALANDAAIKQTKTSIDLFCLESQQPNVVNNFWKKVESLFVTKMHEKTNTVTQQVEKLLSYKNETGWAIVTKGSIVTSVDHGTTVLKTVSEFDKWKDVAINKGFEFAFREHHHKVASTVHICSHLEIPNIAGKIPDFIECPDCHRAMEVFISYKCCHNGDKANGKH*