Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169920 | XP_003590763.1 | 96.413 | 669 | 24 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169920 | sp|Q9SS87|SEOB_ARATH | 31.300 | 623 | 349 | 21 | 109 | 661 | 116 | 729 | 3.60e-87 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169920 | E2FKJ5 | 96.413 | 669 | 24 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1328 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0169920 | 0.802394 | 5.728164e-49 | -8.615850e-47 |
| Msa0007080 | Msa0169920 | 0.808985 | 2.366019e-50 | -8.615850e-47 |
| Msa0017510 | Msa0169920 | 0.828885 | 7.009780e-55 | -8.615850e-47 |
| Msa0029880 | Msa0169920 | 0.844036 | 9.692817e-59 | -8.615850e-47 |
| Msa0029890 | Msa0169920 | 0.836208 | 1.070936e-56 | -8.615850e-47 |
| Msa0029900 | Msa0169920 | 0.903414 | 3.557432e-79 | -8.615850e-47 |
| Msa0029910 | Msa0169920 | 0.967665 | 1.365746e-127 | -8.615850e-47 |
| Msa0040450 | Msa0169920 | 0.811068 | 8.422922e-51 | -8.615850e-47 |
| Msa0068680 | Msa0169920 | 0.803674 | 3.113738e-49 | -8.615850e-47 |
| Msa0077120 | Msa0169920 | 0.938207 | 9.854358e-99 | -8.615850e-47 |
| Msa0077130 | Msa0169920 | 0.883610 | 3.879901e-71 | -8.615850e-47 |
| Msa0077140 | Msa0169920 | 0.827964 | 1.169226e-54 | -8.615850e-47 |
| Msa0101810 | Msa0169920 | -0.811707 | 6.118273e-51 | -8.615850e-47 |
| Msa0110970 | Msa0169920 | 0.818122 | 2.311169e-52 | -8.615850e-47 |
| Msa0112750 | Msa0169920 | 0.820618 | 6.237160e-53 | -8.615850e-47 |
| Msa0125090 | Msa0169920 | 0.844396 | 7.758300e-59 | -8.615850e-47 |
| Msa0125100 | Msa0169920 | 0.805382 | 1.371769e-49 | -8.615850e-47 |
| Msa0125110 | Msa0169920 | 0.843427 | 1.410851e-58 | -8.615850e-47 |
| Msa0125120 | Msa0169920 | 0.869924 | 2.150111e-66 | -8.615850e-47 |
| Msa0142200 | Msa0169920 | 0.814247 | 1.697797e-51 | -8.615850e-47 |
| Msa0157290 | Msa0169920 | 0.827936 | 1.188077e-54 | -8.615850e-47 |
| Msa0165510 | Msa0169920 | 0.809229 | 2.098293e-50 | -8.615850e-47 |
| Msa0169860 | Msa0169920 | 0.869075 | 4.062188e-66 | -8.615850e-47 |
| Msa0169870 | Msa0169920 | 0.827090 | 1.895390e-54 | -8.615850e-47 |
| Msa0169920 | Msa0170090 | 0.910986 | 1.013254e-82 | -8.615850e-47 |
| Msa0169920 | Msa0173990 | 0.821817 | 3.300593e-53 | -8.615850e-47 |
| Msa0169920 | Msa0191040 | 0.802727 | 4.889739e-49 | -8.615850e-47 |
| Msa0169920 | Msa0191250 | 0.832713 | 8.081123e-56 | -8.615850e-47 |
| Msa0169920 | Msa0197660 | 0.810365 | 1.195101e-50 | -8.615850e-47 |
| Msa0169920 | Msa0205850 | 0.805229 | 1.476590e-49 | -8.615850e-47 |
| Msa0169920 | Msa0213520 | 0.801684 | 8.015623e-49 | -8.615850e-47 |
| Msa0169920 | Msa0220420 | 0.814586 | 1.429049e-51 | -8.615850e-47 |
| Msa0169920 | Msa0220580 | 0.812652 | 3.806734e-51 | -8.615850e-47 |
| Msa0169920 | Msa0221290 | 0.821997 | 2.997750e-53 | -8.615850e-47 |
| Msa0169920 | Msa0227470 | 0.817817 | 2.709144e-52 | -8.615850e-47 |
| Msa0169920 | Msa0233340 | 0.802442 | 5.600261e-49 | -8.615850e-47 |
| Msa0169920 | Msa0239800 | 0.809133 | 2.199980e-50 | -8.615850e-47 |
| Msa0169920 | Msa0243100 | 0.817881 | 2.619877e-52 | -8.615850e-47 |
| Msa0169920 | Msa0276920 | 0.810218 | 1.285914e-50 | -8.615850e-47 |
| Msa0169920 | Msa0287650 | 0.824952 | 6.108136e-54 | -8.615850e-47 |
| Msa0169920 | Msa0298240 | 0.803981 | 2.688796e-49 | -8.615850e-47 |
| Msa0169920 | Msa0311860 | 0.806655 | 7.403475e-50 | -8.615850e-47 |
| Msa0169920 | Msa0317510 | 0.819534 | 1.104357e-52 | -8.615850e-47 |
| Msa0169920 | Msa0317730 | 0.806101 | 9.685516e-50 | -8.615850e-47 |
| Msa0169920 | Msa0317740 | 0.800084 | 1.701198e-48 | -8.615850e-47 |
| Msa0169920 | Msa0323610 | 0.825613 | 4.261065e-54 | -8.615850e-47 |
| Msa0169920 | Msa0333920 | 0.815642 | 8.328150e-52 | -8.615850e-47 |
| Msa0169920 | Msa0334040 | 0.828267 | 9.887310e-55 | -8.615850e-47 |
| Msa0169920 | Msa0357020 | 0.803892 | 2.805948e-49 | -8.615850e-47 |
| Msa0169920 | Msa0374850 | 0.801757 | 7.743563e-49 | -8.615850e-47 |
| Msa0169920 | Msa0385390 | 0.834969 | 2.203808e-56 | -8.615850e-47 |
| Msa0169920 | Msa0395790 | 0.807499 | 4.905602e-50 | -8.615850e-47 |
| Msa0169920 | Msa0407900 | 0.808241 | 3.412184e-50 | -8.615850e-47 |
| Msa0169920 | Msa0407920 | 0.824723 | 6.916272e-54 | -8.615850e-47 |
| Msa0169920 | Msa0410650 | 0.807031 | 6.164416e-50 | -8.615850e-47 |
| Msa0169920 | Msa0415320 | 0.811316 | 7.439742e-51 | -8.615850e-47 |
| Msa0169920 | Msa0419820 | 0.806362 | 8.534246e-50 | -8.615850e-47 |
| Msa0169920 | Msa0443260 | 0.805268 | 1.449161e-49 | -8.615850e-47 |
| Msa0169920 | Msa0452920 | 0.828724 | 7.667835e-55 | -8.615850e-47 |
| Msa0169920 | Msa0483650 | 0.829480 | 5.027423e-55 | -8.615850e-47 |
| Msa0169920 | Msa0484780 | 0.841263 | 5.284184e-58 | -8.615850e-47 |
| Msa0169920 | Msa0503540 | 0.805080 | 1.586059e-49 | -8.615850e-47 |
| Msa0169920 | Msa0507680 | 0.805110 | 1.563975e-49 | -8.615850e-47 |
| Msa0169920 | Msa0512900 | 0.803304 | 3.716044e-49 | -8.615850e-47 |
| Msa0169920 | Msa0520700 | 0.808334 | 3.259509e-50 | -8.615850e-47 |
| Msa0169920 | Msa0523460 | 0.815351 | 9.667997e-52 | -8.615850e-47 |
| Msa0169920 | Msa0534590 | 0.804974 | 1.669121e-49 | -8.615850e-47 |
| Msa0169920 | Msa0626220 | 0.804045 | 2.608296e-49 | -8.615850e-47 |
| Msa0169920 | Msa0626280 | 0.804827 | 1.791548e-49 | -8.615850e-47 |
| Msa0169920 | Msa0631120 | 0.807651 | 4.554395e-50 | -8.615850e-47 |
| Msa0169920 | Msa0641360 | 0.801148 | 1.032439e-48 | -8.615850e-47 |
| Msa0169920 | Msa0662240 | 0.814227 | 1.715590e-51 | -8.615850e-47 |
| Msa0169920 | Msa0667050 | 0.809881 | 1.519590e-50 | -8.615850e-47 |
| Msa0169920 | Msa0669440 | 0.815060 | 1.121895e-51 | -8.615850e-47 |
| Msa0169920 | Msa0682330 | 0.804470 | 2.126746e-49 | -8.615850e-47 |
| Msa0169920 | Msa0682550 | 0.820221 | 7.690317e-53 | -8.615850e-47 |
| Msa0169920 | Msa0684500 | 0.806242 | 9.047755e-50 | -8.615850e-47 |
| Msa0169920 | Msa0702350 | 0.805451 | 1.326601e-49 | -8.615850e-47 |
| Msa0169920 | Msa0715470 | 0.809017 | 2.328840e-50 | -8.615850e-47 |
| Msa0169920 | Msa0723990 | 0.808468 | 3.052442e-50 | -8.615850e-47 |
| Msa0169920 | Msa0727710 | 0.812162 | 4.870374e-51 | -8.615850e-47 |
| Msa0169920 | Msa0741900 | 0.808702 | 2.720471e-50 | -8.615850e-47 |
| Msa0169920 | Msa0742180 | 0.812637 | 3.835750e-51 | -8.615850e-47 |
| Msa0169920 | Msa0756630 | -0.807151 | 5.815361e-50 | -8.615850e-47 |
| Msa0169920 | Msa0789660 | 0.810986 | 8.774070e-51 | -8.615850e-47 |
| Msa0169920 | Msa0824660 | 0.814333 | 1.625228e-51 | -8.615850e-47 |
| Msa0169920 | Msa0829620 | 0.826346 | 2.853153e-54 | -8.615850e-47 |
| Msa0169920 | Msa0843400 | 0.801404 | 9.148711e-49 | -8.615850e-47 |
| Msa0169920 | Msa0863930 | 0.804947 | 1.691661e-49 | -8.615850e-47 |
| Msa0169920 | Msa0867890 | 0.833599 | 4.860548e-56 | -8.615850e-47 |
| Msa0169920 | Msa0880140 | 0.827873 | 1.230139e-54 | -8.615850e-47 |
| Msa0169920 | Msa0895790 | 0.814647 | 1.385260e-51 | -8.615850e-47 |
| Msa0169920 | Msa0909120 | 0.809538 | 1.800592e-50 | -8.615850e-47 |
| Msa0169920 | Msa0910430 | 0.814881 | 1.228904e-51 | -8.615850e-47 |
| Msa0169920 | Msa0940460 | 0.800334 | 1.513044e-48 | -8.615850e-47 |
| Msa0169920 | Msa0941820 | 0.802653 | 5.064903e-49 | -8.615850e-47 |
| Msa0169920 | Msa0961690 | 0.801644 | 8.170202e-49 | -8.615850e-47 |
| Msa0169920 | Msa0964840 | 0.809700 | 1.662377e-50 | -8.615850e-47 |
| Msa0169920 | Msa1032170 | 0.806485 | 8.041006e-50 | -8.615850e-47 |
| Msa0169920 | Msa1070690 | 0.805126 | 1.552013e-49 | -8.615850e-47 |
| Msa0169920 | Msa1079590 | 0.806087 | 9.754457e-50 | -8.615850e-47 |
| Msa0169920 | Msa1082500 | 0.847904 | 8.607320e-60 | -8.615850e-47 |
| Msa0169920 | Msa1085200 | 0.800725 | 1.259533e-48 | -8.615850e-47 |
| Msa0169920 | Msa1104000 | 0.805102 | 1.569972e-49 | -8.615850e-47 |
| Msa0169920 | Msa1127770 | 0.800953 | 1.131626e-48 | -8.615850e-47 |
| Msa0169920 | Msa1140690 | 0.802744 | 4.850770e-49 | -8.615850e-47 |
| Msa0169920 | Msa1151910 | 0.801537 | 8.594512e-49 | -8.615850e-47 |
| Msa0169920 | Msa1152990 | 0.804964 | 1.677315e-49 | -8.615850e-47 |
| Msa0169920 | Msa1169990 | 0.800614 | 1.326762e-48 | -8.615850e-47 |
| Msa0169920 | Msa1172670 | 0.811181 | 7.961154e-51 | -8.615850e-47 |
| Msa0169920 | Msa1179280 | 0.803119 | 4.058459e-49 | -8.615850e-47 |
| Msa0169920 | Msa1179520 | 0.802768 | 4.795858e-49 | -8.615850e-47 |
| Msa0169920 | Msa1185980 | 0.804221 | 2.396679e-49 | -8.615850e-47 |
| Msa0169920 | Msa1193290 | 0.807251 | 5.537552e-50 | -8.615850e-47 |
| Msa0169920 | Msa1214880 | 0.820651 | 6.128397e-53 | -8.615850e-47 |
| Msa0169920 | Msa1214890 | 0.824372 | 8.366054e-54 | -8.615850e-47 |
| Msa0169920 | Msa1224830 | 0.803103 | 4.088834e-49 | -8.615850e-47 |
| Msa0169920 | Msa1233560 | 0.808067 | 3.716042e-50 | -8.615850e-47 |
| Msa0169920 | Msa1242220 | 0.807625 | 4.612806e-50 | -8.615850e-47 |
| Msa0169920 | Msa1260610 | 0.817453 | 3.271224e-52 | -8.615850e-47 |
| Msa0169920 | Msa1266960 | 0.801157 | 1.027880e-48 | -8.615850e-47 |
| Msa0169920 | Msa1271260 | 0.807305 | 5.393421e-50 | -8.615850e-47 |
| Msa0169920 | Msa1278840 | 0.807527 | 4.839689e-50 | -8.615850e-47 |
| Msa0169920 | Msa1283860 | 0.802519 | 5.397872e-49 | -8.615850e-47 |
| Msa0169920 | Msa1287440 | 0.801022 | 1.095379e-48 | -8.615850e-47 |
| Msa0169920 | Msa1305870 | 0.807679 | 4.492710e-50 | -8.615850e-47 |
| Msa0169920 | Msa1313970 | 0.807459 | 5.002241e-50 | -8.615850e-47 |
| Msa0169920 | Msa1314340 | 0.800280 | 1.552152e-48 | -8.615850e-47 |
| Msa0169920 | Msa1322890 | 0.811494 | 6.808146e-51 | -8.615850e-47 |
| Msa0169920 | Msa1331910 | 0.828962 | 6.715384e-55 | -8.615850e-47 |
| Msa0169920 | Msa1341570 | 0.805568 | 1.253779e-49 | -8.615850e-47 |
| Msa0169920 | Msa1346370 | 0.802913 | 4.476830e-49 | -8.615850e-47 |
| Msa0169920 | Msa1409870 | 0.802196 | 6.291940e-49 | -8.615850e-47 |
| Msa0169920 | Msa1410210 | 0.800288 | 1.546245e-48 | -8.615850e-47 |
| Msa0169920 | Msa1438250 | 0.812033 | 5.197182e-51 | -8.615850e-47 |
| Msa0169920 | Msa1452120 | 0.809196 | 2.132636e-50 | -8.615850e-47 |
| Msa0169920 | Msa1457430 | 0.812001 | 5.279852e-51 | -8.615850e-47 |
| Msa0169920 | Msa1460020 | 0.806077 | 9.799701e-50 | -8.615850e-47 |
| Msa0169920 | Msa1464160 | 0.810628 | 1.048910e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169920 | MtrunA17_Chr1g0186851 | 96.413 | 669 | 24 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1328 |
| Msa0169920 | MtrunA17_Chr1g0186861 | 81.928 | 664 | 118 | 1 | 1 | 662 | 1 | 664 | 0.0 | 1126 |
| Msa0169920 | MtrunA17_Chr1g0187041 | 77.061 | 667 | 151 | 1 | 1 | 665 | 1 | 667 | 0.0 | 1036 |
| Msa0169920 | MtrunA17_Chr1g0186911 | 83.274 | 562 | 94 | 0 | 101 | 662 | 1 | 562 | 0.0 | 971 |
| Msa0169920 | MtrunA17_Chr1g0186841 | 58.383 | 668 | 270 | 6 | 5 | 669 | 9 | 671 | 0.0 | 801 |
| Msa0169920 | MtrunA17_Chr1g0165791 | 35.232 | 667 | 408 | 10 | 20 | 668 | 25 | 685 | 2.72e-142 | 431 |
| Msa0169920 | MtrunA17_Chr7g0226571 | 33.862 | 694 | 400 | 19 | 24 | 663 | 25 | 713 | 1.19e-110 | 350 |
| Msa0169920 | MtrunA17_Chr1g0187001 | 31.947 | 673 | 397 | 16 | 20 | 668 | 11 | 646 | 2.04e-102 | 326 |
| Msa0169920 | MtrunA17_Chr1g0186991 | 30.700 | 671 | 406 | 17 | 20 | 663 | 31 | 669 | 2.86e-99 | 318 |
| Msa0169920 | MtrunA17_Chr8g0381301 | 30.484 | 702 | 428 | 22 | 13 | 660 | 8 | 703 | 1.14e-95 | 310 |
| Msa0169920 | MtrunA17_Chr3g0116601 | 31.387 | 685 | 415 | 19 | 23 | 659 | 27 | 704 | 1.75e-95 | 309 |
| Msa0169920 | MtrunA17_Chr1g0186981 | 29.955 | 671 | 410 | 14 | 20 | 666 | 34 | 668 | 8.95e-93 | 301 |
| Msa0169920 | MtrunA17_Chr1g0186901 | 76.699 | 103 | 22 | 1 | 1 | 101 | 1 | 103 | 1.03e-45 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169920 | AT3G01680.1 | 31.300 | 623 | 349 | 21 | 109 | 661 | 116 | 729 | 3.66e-88 | 291 |
| Msa0169920 | AT3G01670.1 | 25.424 | 708 | 437 | 23 | 22 | 659 | 134 | 820 | 7.41e-53 | 196 |
| Msa0169920 | AT3G01670.2 | 25.424 | 708 | 437 | 23 | 22 | 659 | 158 | 844 | 8.44e-53 | 196 |
| Msa0169920 | AT1G67790.1 | 24.378 | 603 | 398 | 19 | 96 | 657 | 79 | 664 | 2.37e-40 | 157 |
Find 155 sgRNAs with CRISPR-Local
Find 365 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGAGTATGGAGATTTC+TGG | 0.121043 | 1_4:-53471400 | Msa0169920:CDS |
| TTCTTTATATGATCATAAAT+TGG | 0.139133 | 1_4:+53470391 | None:intergenic |
| GGAAATTATGGAAGTGTTTA+AGG | 0.152492 | 1_4:-53470660 | Msa0169920:CDS |
| AAAACATCGCAATGAAATTT+TGG | 0.167607 | 1_4:-53471285 | Msa0169920:CDS |
| TATGTACTTGATACCTTTAA+TGG | 0.197622 | 1_4:+53470246 | None:intergenic |
| CATTGATTCTTCTTTGGATT+TGG | 0.201689 | 1_4:+53470102 | None:intergenic |
| CATCACTTTGCACCCATTAA+AGG | 0.204242 | 1_4:-53470259 | Msa0169920:CDS |
| AATTCCCAGTTGATGTATAT+TGG | 0.204655 | 1_4:-53471145 | Msa0169920:CDS |
| ACATTGATATAAATATTAAA+TGG | 0.221988 | 1_4:-53470042 | Msa0169920:CDS |
| GAAAAGTCTGTCATCATTTA+TGG | 0.229545 | 1_4:-53469895 | Msa0169920:CDS |
| CAAATGTGGTTAACAACTTT+TGG | 0.237806 | 1_4:-53469753 | Msa0169920:CDS |
| TTGTGTCATTGATTCTTCTT+TGG | 0.239627 | 1_4:+53470096 | None:intergenic |
| AGGCAGAATTTATCTCATTT+TGG | 0.249523 | 1_4:-53470910 | Msa0169920:CDS |
| CTTGATTATGCCTAATGATT+TGG | 0.255438 | 1_4:+53471343 | None:intergenic |
| TCAAACCCCGACGGAAATTA+TGG | 0.258203 | 1_4:-53470672 | Msa0169920:CDS |
| CCATCATAGATGGGAGCTTT+TGG | 0.260268 | 1_4:+53470614 | None:intergenic |
| ATTCCATATGATTCAAGTTT+GGG | 0.287868 | 1_4:-53470146 | Msa0169920:CDS |
| CAAAAGTTGTTAACCACATT+TGG | 0.289864 | 1_4:+53469754 | None:intergenic |
| TCAAAATTGAGATGTCTTCT+TGG | 0.293163 | 1_4:+53470416 | None:intergenic |
| CATTCCATATGATTCAAGTT+TGG | 0.299165 | 1_4:-53470147 | Msa0169920:CDS |
| AAAATTACTCTTGTGGGTTA+TGG | 0.300184 | 1_4:+53474870 | None:intergenic |
| TCCAGCTCTTGCACCAGCTT+TGG | 0.314260 | 1_4:-53471171 | Msa0169920:CDS |
| GCTCATCAGACATGGTTAAA+TGG | 0.320274 | 1_4:+53474761 | None:intergenic |
| ATTCCCAGTTGATGTATATT+GGG | 0.322317 | 1_4:-53471144 | Msa0169920:CDS |
| TCACAAATGCAACTAGAATA+AGG | 0.336343 | 1_4:-53469158 | Msa0169920:three_prime_UTR |
| GAAAGATGTGGCGATCAATA+AGG | 0.338625 | 1_4:-53469545 | Msa0169920:CDS |
| CATGTCTGATGAGCACATTT+TGG | 0.345477 | 1_4:-53474752 | Msa0169920:CDS |
| CTCCCCAAACTTGAATCATA+TGG | 0.346723 | 1_4:+53470143 | None:intergenic |
| CATTGGCCTTATCGCCGTTA+TGG | 0.358368 | 1_4:+53469362 | None:intergenic |
| ATAACCCAATATACATCAAC+TGG | 0.359445 | 1_4:+53471140 | None:intergenic |
| AAAACCTGTCAAACTATTCA+TGG | 0.362097 | 1_4:-53471457 | Msa0169920:CDS |
| ATTCAAGTTTGGGGAGTAAA+GGG | 0.363993 | 1_4:-53470136 | Msa0169920:CDS |
| ACTCATGGCTACATTGCTTA+AGG | 0.368571 | 1_4:+53469208 | None:intergenic |
| TCTTCTTTGGATTTGGAGTA+AGG | 0.371960 | 1_4:+53470109 | None:intergenic |
| GTTGAGACTCCAAGCAAAAT+AGG | 0.374745 | 1_4:+53469779 | None:intergenic |
| CTAGAGATTCCCAATATTGC+TGG | 0.376689 | 1_4:-53469457 | Msa0169920:CDS |
| TCTTTATATGATCATAAATT+GGG | 0.380456 | 1_4:+53470392 | None:intergenic |
| TCCATTGCGCGGTGACAATC+TGG | 0.382744 | 1_4:+53469409 | None:intergenic |
| TTTAGTCGAACCATCATAGA+TGG | 0.384861 | 1_4:+53470604 | None:intergenic |
| ATGTACTTGATACCTTTAAT+GGG | 0.385849 | 1_4:+53470247 | None:intergenic |
| TATGATCATATAAAGAAAAC+TGG | 0.388913 | 1_4:-53470385 | Msa0169920:CDS |
| CAGACATGGTTAAATGGTTA+TGG | 0.390652 | 1_4:+53474767 | None:intergenic |
| TGCACTAAAATTACTCTTGT+GGG | 0.397684 | 1_4:+53474864 | None:intergenic |
| GGACTCAACACAAGAAATAA+AGG | 0.400912 | 1_4:+53470196 | None:intergenic |
| CATCAAATTTAGTGTCACTA+TGG | 0.409076 | 1_4:+53474707 | None:intergenic |
| CTTTCTTACAAGAATGAGAC+TGG | 0.413501 | 1_4:-53469655 | Msa0169920:CDS |
| TCTGGACACTCGATAAAATC+TGG | 0.418484 | 1_4:+53469427 | None:intergenic |
| CTCATGGCTACATTGCTTAA+GGG | 0.430820 | 1_4:+53469209 | None:intergenic |
| ATTGTGACTTCTGTTGATCA+TGG | 0.431318 | 1_4:-53469607 | Msa0169920:CDS |
| TAAAGGTATCAAGTACATAA+AGG | 0.437070 | 1_4:-53470242 | Msa0169920:CDS |
| ATTTAAGTTATCTGTTCTAA+AGG | 0.438062 | 1_4:-53469091 | Msa0169920:three_prime_UTR |
| GAACCACTTGCCAAATCATT+AGG | 0.438307 | 1_4:-53471353 | Msa0169920:CDS |
| TGGCAAGTGGTTCTGTTGGT+TGG | 0.443588 | 1_4:+53471363 | None:intergenic |
| AACAAACACTGTTACACAAC+AGG | 0.447051 | 1_4:-53469689 | Msa0169920:CDS |
| GATTCAAGTTTGGGGAGTAA+AGG | 0.451419 | 1_4:-53470137 | Msa0169920:CDS |
| GTTCTTGTTCATTTCAACTC+TGG | 0.451654 | 1_4:-53470446 | Msa0169920:CDS |
| TAAGGCCAATGGCAAGCATT+AGG | 0.453416 | 1_4:-53469350 | Msa0169920:intron |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1_4:+53470337 | None:intergenic |
| CTTTGAAGTCAAAGATGCCT+TGG | 0.456421 | 1_4:-53470291 | Msa0169920:CDS |
| AGAAGTCACAATAGACCCTT+TGG | 0.457140 | 1_4:+53469618 | None:intergenic |
| CAACATGGGTTGAACGTGTA+AGG | 0.459385 | 1_4:+53474653 | None:intergenic |
| TAATAGCGGCATCATTTGCT+AGG | 0.464096 | 1_4:+53469824 | None:intergenic |
| AAAGATGTGGCGATCAATAA+GGG | 0.468286 | 1_4:-53469544 | Msa0169920:CDS |
| TCCAAAGCTGGTGCAAGAGC+TGG | 0.468376 | 1_4:+53471170 | None:intergenic |
| TCAGGGACATCAAGGAGGTC+TGG | 0.469377 | 1_4:-53473534 | Msa0169920:intron |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1_4:-53471446 | Msa0169920:CDS |
| CATTGATATAAATATTAAAT+GGG | 0.472794 | 1_4:-53470041 | Msa0169920:intron |
| TATAATTATCAGGGACATCA+AGG | 0.473246 | 1_4:-53473542 | Msa0169920:intron |
| CATTGAAATCATCATTGAGT+TGG | 0.474539 | 1_4:-53471228 | Msa0169920:CDS |
| GGAGCTCAAGAATTTGATCA+AGG | 0.477807 | 1_4:-53471264 | Msa0169920:CDS |
| CAACCCATGAATAGTTTGAC+AGG | 0.478125 | 1_4:+53471453 | None:intergenic |
| TTGTAAGCTATTTCCTCACC+TGG | 0.482226 | 1_4:+53471500 | None:intergenic |
| TTATATCAATGTCAGCCAGC+AGG | 0.486824 | 1_4:+53470053 | None:intergenic |
| AGAATTTGATCAAGGCAACT+TGG | 0.494238 | 1_4:-53471256 | Msa0169920:CDS |
| TCACAATGCACTATACAGAT+TGG | 0.496814 | 1_4:-53470844 | Msa0169920:intron |
| AGCTACAAGTGTTGCCATAA+CGG | 0.504999 | 1_4:-53469376 | Msa0169920:CDS |
| CTGGTGGATTAATGTTATCC+AGG | 0.508936 | 1_4:+53473507 | None:intergenic |
| ATCTTTCCATTTGTCAAACT+CGG | 0.509793 | 1_4:+53469561 | None:intergenic |
| GTGTTGCCATAACGGCGATA+AGG | 0.515751 | 1_4:-53469368 | Msa0169920:CDS |
| ACACTTCCATAATTTCCGTC+GGG | 0.516308 | 1_4:+53470666 | None:intergenic |
| CAGCAATATTGGGAATCTCT+AGG | 0.518330 | 1_4:+53469458 | None:intergenic |
| CCAAAAGCTCCCATCTATGA+TGG | 0.519285 | 1_4:-53470614 | Msa0169920:CDS |
| CAGAGTATAACAAGTTACTC+AGG | 0.520550 | 1_4:-53470703 | Msa0169920:CDS |
| ACTGGGAATTGTTCCAAAGC+TGG | 0.521352 | 1_4:+53471158 | None:intergenic |
| GTGCACTAAAATTACTCTTG+TGG | 0.523282 | 1_4:+53474863 | None:intergenic |
| TCAAGGAGGTCTGGACCACC+TGG | 0.524704 | 1_4:-53473525 | Msa0169920:CDS |
| CAATGACACAAGAATTAATG+TGG | 0.525892 | 1_4:-53470084 | Msa0169920:CDS |
| CAGTGTCCGAGTTTGACAAA+TGG | 0.528291 | 1_4:-53469567 | Msa0169920:CDS |
| ATCATTCCATTCCTCCACAA+TGG | 0.531780 | 1_4:+53470336 | None:intergenic |
| AATGTGGGTTGATTCCCTGC+TGG | 0.532892 | 1_4:-53470068 | Msa0169920:CDS |
| CAACAATTCACTAAGTATGC+TGG | 0.534554 | 1_4:-53469850 | Msa0169920:CDS |
| CTGAGCAACAATTGCAACAA+TGG | 0.536652 | 1_4:+53471112 | None:intergenic |
| ATGCCTAATGATTTGGCAAG+TGG | 0.539047 | 1_4:+53471350 | None:intergenic |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.544476 | 1_4:+53471359 | None:intergenic |
| TATATCAATGTCAGCCAGCA+GGG | 0.546119 | 1_4:+53470054 | None:intergenic |
| CAGATGTCATGCAAGGCACC+AGG | 0.546738 | 1_4:-53471518 | Msa0169920:CDS |
| ATGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1_4:-53469876 | Msa0169920:CDS |
| AGCGGTGAAGTGAAGCTAGC+TGG | 0.549501 | 1_4:+53473488 | None:intergenic |
| TTGTGACTTCTGTTGATCAT+GGG | 0.554557 | 1_4:-53469606 | Msa0169920:CDS |
| CATTTATGGAGGTAAAGATA+AGG | 0.555548 | 1_4:-53469881 | Msa0169920:CDS |
| CAATGATAATGCAAGACTCA+TGG | 0.555837 | 1_4:+53469193 | None:intergenic |
| AACACTTCCATAATTTCCGT+CGG | 0.557817 | 1_4:+53470665 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1_4:-53470876 | Msa0169920:CDS |
| TCCAGATTGTCACCGCGCAA+TGG | 0.563294 | 1_4:-53469410 | Msa0169920:CDS |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1_4:-53470342 | Msa0169920:CDS |
| CTTCTTTGGATTTGGAGTAA+GGG | 0.567493 | 1_4:+53470110 | None:intergenic |
| AGCTACCTAATGCTTGCCAT+TGG | 0.572796 | 1_4:+53469345 | None:intergenic |
| AAAATGCAATAATTAAACAT+AGG | 0.573094 | 1_4:+53469290 | None:intergenic |
| AAACCTGTCAAACTATTCAT+GGG | 0.575469 | 1_4:-53471456 | Msa0169920:CDS |
| AATAGCGGCATCATTTGCTA+GGG | 0.575747 | 1_4:+53469825 | None:intergenic |
| CAAAATGTGCTCATCAGACA+TGG | 0.576873 | 1_4:+53474753 | None:intergenic |
| GCTTCAGGCTTCGAAAGTTG+AGG | 0.577864 | 1_4:+53471314 | None:intergenic |
| TGTGAATAAGTGATCGCACT+AGG | 0.578637 | 1_4:+53474812 | None:intergenic |
| GGGTGGGCAATTGTAACCAA+AGG | 0.579885 | 1_4:-53469634 | Msa0169920:CDS |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1_4:+53470359 | None:intergenic |
| TGATGTAGAATCTTTCCTTG+TGG | 0.585970 | 1_4:+53470175 | None:intergenic |
| TGATGGTTCGACTAAAACAC+TGG | 0.587238 | 1_4:-53470597 | Msa0169920:intron |
| TTTCTTGTGTTGAGTCCACA+AGG | 0.590992 | 1_4:-53470190 | Msa0169920:CDS |
| TTAGTCGAACCATCATAGAT+GGG | 0.591512 | 1_4:+53470605 | None:intergenic |
| GCCAGAAATCTCCATACTCA+AGG | 0.592198 | 1_4:+53471399 | None:intergenic |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1_4:-53470350 | Msa0169920:CDS |
| GAAGCCAACACAAGATTGTG+TGG | 0.598027 | 1_4:-53470363 | Msa0169920:CDS |
| GGTGGGCAATTGTAACCAAA+GGG | 0.598470 | 1_4:-53469633 | Msa0169920:CDS |
| GTCATGCAAGGCACCAGGTG+AGG | 0.600067 | 1_4:-53471513 | Msa0169920:CDS |
| GTGCGATCACTTATTCACAT+TGG | 0.606075 | 1_4:-53474808 | Msa0169920:CDS |
| CAACTCGCGTCATGACATCA+AGG | 0.608552 | 1_4:-53471198 | Msa0169920:CDS |
| TTACAAGAATGAGACTGGGT+GGG | 0.613509 | 1_4:-53469650 | Msa0169920:CDS |
| TTCCATATGATTCAAGTTTG+GGG | 0.613604 | 1_4:-53470145 | Msa0169920:CDS |
| GCAGAACGTTATCAACAACA+TGG | 0.615403 | 1_4:+53474638 | None:intergenic |
| CACTTCCATAATTTCCGTCG+GGG | 0.623012 | 1_4:+53470667 | None:intergenic |
| AATGACACAAGAATTAATGT+GGG | 0.631951 | 1_4:-53470083 | Msa0169920:CDS |
| TTTGAAGCAAATTAACTCTG+AGG | 0.632146 | 1_4:-53473459 | Msa0169920:intron |
| CCAGAAATCTCCATACTCAA+GGG | 0.637724 | 1_4:+53471400 | None:intergenic |
| TTTCTTACAAGAATGAGACT+GGG | 0.638297 | 1_4:-53469654 | Msa0169920:CDS |
| CATAACGGCGATAAGGCCAA+TGG | 0.641863 | 1_4:-53469361 | Msa0169920:CDS |
| CTTACAAGAATGAGACTGGG+TGG | 0.646290 | 1_4:-53469651 | Msa0169920:CDS |
| GGAGTCTCAACAGCCAAATG+TGG | 0.652213 | 1_4:-53469767 | Msa0169920:CDS |
| AGGTATCAAGTACATAAAGG+AGG | 0.656067 | 1_4:-53470239 | Msa0169920:CDS |
| AAGTCTGTCATCATTTATGG+AGG | 0.656284 | 1_4:-53469892 | Msa0169920:CDS |
| GTGGATTAATGTTATCCAGG+TGG | 0.656925 | 1_4:+53473510 | None:intergenic |
| GTTTGACAAATGGAAAGATG+TGG | 0.658966 | 1_4:-53469557 | Msa0169920:CDS |
| ATGATGGCAGATGTCATGCA+AGG | 0.660192 | 1_4:-53471525 | Msa0169920:intron |
| AGTCTTCGTCTGCTTAATAG+CGG | 0.660331 | 1_4:+53469810 | None:intergenic |
| AAGTGATGCAAAACATACCA+AGG | 0.663117 | 1_4:+53470274 | None:intergenic |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1_4:+53471141 | None:intergenic |
| TAGGTGAGAGCAAATATGAA+CGG | 0.669677 | 1_4:+53469477 | None:intergenic |
| AAGCCAACACAAGATTGTGT+GGG | 0.670390 | 1_4:-53470362 | Msa0169920:CDS |
| TAATAAACACTTCCATTGCG+CGG | 0.681677 | 1_4:+53469398 | None:intergenic |
| CAGAACGTTATCAACAACAT+GGG | 0.681953 | 1_4:+53474639 | None:intergenic |
| ATTTAGAGAACATCATCACA+AGG | 0.686779 | 1_4:-53469509 | Msa0169920:CDS |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1_4:-53470347 | Msa0169920:CDS |
| GAAGCTCTTTCAAACCCCGA+CGG | 0.688404 | 1_4:-53470681 | Msa0169920:CDS |
| GGTGAAGTGAAGCTAGCTGG+TGG | 0.705282 | 1_4:+53473491 | None:intergenic |
| AATTATCAGGGACATCAAGG+AGG | 0.721162 | 1_4:-53473539 | Msa0169920:intron |
| ATTTGCTTCAAAGTACACAG+CGG | 0.765745 | 1_4:+53473470 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAATTTAAGAGTTTA+AGG | - | chr1_4:53471518-53471537 | Msa0169920:CDS | 10.0% |
| !!! | TTATAAGTAATTTTTTTTGT+AGG | - | chr1_4:53471577-53471596 | Msa0169920:intron | 10.0% |
| !!! | TATAAGTAATTTTTTTTGTA+GGG | - | chr1_4:53471578-53471597 | Msa0169920:intron | 10.0% |
| !!! | TTCAATTTTTTTTAAAAACA+TGG | + | chr1_4:53472219-53472238 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAAAATTGAAGAA+AGG | - | chr1_4:53472222-53472241 | Msa0169920:intron | 10.0% |
| !!! | ATATGTTTTTATAATTAAAC+AGG | - | chr1_4:53473494-53473513 | Msa0169920:CDS | 10.0% |
| !! | ACATTGATATAAATATTAAA+TGG | - | chr1_4:53473952-53473971 | Msa0169920:intron | 10.0% |
| !! | CATTGATATAAATATTAAAT+GGG | - | chr1_4:53473953-53473972 | Msa0169920:intron | 10.0% |
| !! | AGTTATTTGTCTTTAATTAT+AGG | + | chr1_4:53470428-53470447 | None:intergenic | 15.0% |
| !!! | ATAACTTGTTTATAATTATC+AGG | - | chr1_4:53470442-53470461 | Msa0169920:CDS | 15.0% |
| !!! | TAACTTGTTTATAATTATCA+GGG | - | chr1_4:53470443-53470462 | Msa0169920:CDS | 15.0% |
| !!! | TTGTTTCTTATTTTAATTGT+GGG | + | chr1_4:53470741-53470760 | None:intergenic | 15.0% |
| !!! | TTTGTTTCTTATTTTAATTG+TGG | + | chr1_4:53470742-53470761 | None:intergenic | 15.0% |
| !! | ATATGTCATTGATAAAAAAA+AGG | + | chr1_4:53470845-53470864 | None:intergenic | 15.0% |
| !!! | TACTATTTTCAAATTTCTTT+GGG | + | chr1_4:53470984-53471003 | None:intergenic | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | + | chr1_4:53471607-53471626 | None:intergenic | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | + | chr1_4:53471268-53471287 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | + | chr1_4:53471387-53471406 | None:intergenic | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | - | chr1_4:53471607-53471626 | Msa0169920:intron | 15.0% |
| !!! | TATTTTGTTATATTGAAGAA+AGG | - | chr1_4:53472186-53472205 | Msa0169920:intron | 15.0% |
| !!! | TTTCATGAATTTGTTTAATA+TGG | + | chr1_4:53472314-53472333 | None:intergenic | 15.0% |
| !! | ATATTAAACAAATTCATGAA+AGG | - | chr1_4:53472313-53472332 | Msa0169920:intron | 15.0% |
| !! | ACATTTATATTGTATAATGA+TGG | - | chr1_4:53472453-53472472 | Msa0169920:intron | 15.0% |
| !! | TAAATAATTTCCATCAATAT+GGG | + | chr1_4:53473256-53473275 | None:intergenic | 15.0% |
| !! | TTAAATAATTTCCATCAATA+TGG | + | chr1_4:53473257-53473276 | None:intergenic | 15.0% |
| !!! | ATATCTTAATTTAGTTTCAT+TGG | - | chr1_4:53473432-53473451 | Msa0169920:intron | 15.0% |
| !! | TCTTTATATGATCATAAATT+GGG | + | chr1_4:53473605-53473624 | None:intergenic | 15.0% |
| !! | TTCTTTATATGATCATAAAT+TGG | + | chr1_4:53473606-53473625 | None:intergenic | 15.0% |
| !! | AAAATGCAATAATTAAACAT+AGG | + | chr1_4:53474707-53474726 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTCTGAATCAATA+TGG | - | chr1_4:53469155-53469174 | Msa0169920:three_prime_UTR | 20.0% |
| !!! | CTACTATTTTCAAATTTCTT+TGG | + | chr1_4:53470985-53471004 | None:intergenic | 20.0% |
| !! | AAGAAATTTGAAAATAGTAG+TGG | - | chr1_4:53470985-53471004 | Msa0169920:intron | 20.0% |
| !!! | GATACAAAAAAGTATGTAAT+GGG | + | chr1_4:53471030-53471049 | None:intergenic | 20.0% |
| !!! | AGATACAAAAAAGTATGTAA+TGG | + | chr1_4:53471031-53471050 | None:intergenic | 20.0% |
| !! | CTTCATTTACTAAAAGTAAA+TGG | + | chr1_4:53471076-53471095 | None:intergenic | 20.0% |
| !!! | TTTACTTTTAGTAAATGAAG+AGG | - | chr1_4:53471076-53471095 | Msa0169920:intron | 20.0% |
| !! | TTGAAATTAAGGAGTTAAAA+GGG | + | chr1_4:53471122-53471141 | None:intergenic | 20.0% |
| !!! | TTTTAACTCCTTAATTTCAA+GGG | - | chr1_4:53471122-53471141 | Msa0169920:CDS | 20.0% |
| !! | ATATTTAACCCTTGAAATTA+AGG | + | chr1_4:53471133-53471152 | None:intergenic | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | - | chr1_4:53471298-53471317 | Msa0169920:CDS | 20.0% |
| !!! | TTTTACGATATTTTTTTCAG+AGG | + | chr1_4:53471349-53471368 | None:intergenic | 20.0% |
| !!! | TAAACAAAATTTGTTTTAGC+AGG | - | chr1_4:53471546-53471565 | Msa0169920:intron | 20.0% |
| !!! | AAACAAAATTTGTTTTAGCA+GGG | - | chr1_4:53471547-53471566 | Msa0169920:intron | 20.0% |
| !!! | TTTTTCTTTGTTTCAATTGT+GGG | + | chr1_4:53471944-53471963 | None:intergenic | 20.0% |
| !! | TTTAGACTTCTAAATATGTT+GGG | + | chr1_4:53472028-53472047 | None:intergenic | 20.0% |
| !!! | TTTTAGACTTCTAAATATGT+TGG | + | chr1_4:53472029-53472048 | None:intergenic | 20.0% |
| !!! | TAAACTATAAAGTTTTCAGA+AGG | + | chr1_4:53472422-53472441 | None:intergenic | 20.0% |
| !! | ACTTGATTATAAACAAAACA+AGG | + | chr1_4:53472987-53473006 | None:intergenic | 20.0% |
| !!! | TAGTTACAATTTTTTTTTCC+AGG | - | chr1_4:53473055-53473074 | Msa0169920:intron | 20.0% |
| !!! | AGTTACAATTTTTTTTTCCA+GGG | - | chr1_4:53473056-53473075 | Msa0169920:intron | 20.0% |
| !!! | TGTTTAAGGTTTTAATTTTC+TGG | - | chr1_4:53473348-53473367 | Msa0169920:intron | 20.0% |
| !! | TATGATCATATAAAGAAAAC+TGG | - | chr1_4:53473609-53473628 | Msa0169920:intron | 20.0% |
| !! | TTGTAATTTCATGTTATCTT+TGG | - | chr1_4:53474061-53474080 | Msa0169920:intron | 20.0% |
| !!! | TTTCTTCTTAGTTTTCTTTA+TGG | - | chr1_4:53474724-53474743 | Msa0169920:CDS | 20.0% |
| !!! | ATTTAAGTTATCTGTTCTAA+AGG | - | chr1_4:53474903-53474922 | Msa0169920:five_prime_UTR | 20.0% |
| !!! | AATCTTTTTTCAACATTGCT+GGG | - | chr1_4:53469313-53469332 | Msa0169920:intron | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | - | chr1_4:53470080-53470099 | Msa0169920:CDS | 25.0% |
| !! | TTTTCGAATGATTTCTCTAA+TGG | + | chr1_4:53470215-53470234 | None:intergenic | 25.0% |
| ! | ATTAGAGAAATCATTCGAAA+AGG | - | chr1_4:53470214-53470233 | Msa0169920:CDS | 25.0% |
| !! | CCAACTTTTAATATATCTCT+CGG | - | chr1_4:53470382-53470401 | Msa0169920:CDS | 25.0% |
| ! | CTTGAAATTAAGGAGTTAAA+AGG | + | chr1_4:53471123-53471142 | None:intergenic | 25.0% |
| !!! | CTTTTAACTCCTTAATTTCA+AGG | - | chr1_4:53471121-53471140 | Msa0169920:CDS | 25.0% |
| !! | TCAAGGGTTAAATATGTTTT+TGG | - | chr1_4:53471138-53471157 | Msa0169920:CDS | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | + | chr1_4:53471257-53471276 | None:intergenic | 25.0% |
| !! | TTAGAAGGTTGCAATTTTAT+AGG | - | chr1_4:53471637-53471656 | Msa0169920:intron | 25.0% |
| !! | TAGAAGGTTGCAATTTTATA+GGG | - | chr1_4:53471638-53471657 | Msa0169920:intron | 25.0% |
| !!! | TTTTTTAACATGTACCCTTA+GGG | + | chr1_4:53471719-53471738 | None:intergenic | 25.0% |
| !!! | TTTTTTTAACATGTACCCTT+AGG | + | chr1_4:53471720-53471739 | None:intergenic | 25.0% |
| ! | AAAAAAGAACAACTTTGCAT+TGG | - | chr1_4:53471741-53471760 | Msa0169920:intron | 25.0% |
| !!! | GTTTTTCTTTGTTTCAATTG+TGG | + | chr1_4:53471945-53471964 | None:intergenic | 25.0% |
| ! | AAACCTTATCCATAAAGATT+TGG | - | chr1_4:53471961-53471980 | Msa0169920:intron | 25.0% |
| !!! | ATAAAGTTTTGATGAGTTCA+AGG | - | chr1_4:53472112-53472131 | Msa0169920:intron | 25.0% |
| ! | TTCAATGAAGATCTTTCTTA+AGG | - | chr1_4:53472344-53472363 | Msa0169920:intron | 25.0% |
| ! | TCAATGAAGATCTTTCTTAA+GGG | - | chr1_4:53472345-53472364 | Msa0169920:intron | 25.0% |
| !!! | AATAGTTTGACAGGTTTTTT+AGG | + | chr1_4:53472535-53472554 | None:intergenic | 25.0% |
| !! | AAAACATCGCAATGAAATTT+TGG | - | chr1_4:53472709-53472728 | Msa0169920:intron | 25.0% |
| ! | GGAAGAAAATACTTCAATTT+GGG | + | chr1_4:53473235-53473254 | None:intergenic | 25.0% |
| ! | TTTCTGTTTAAGTATGTACA+AGG | - | chr1_4:53473456-53473475 | Msa0169920:intron | 25.0% |
| ! | ATGTACTTGATACCTTTAAT+GGG | + | chr1_4:53473750-53473769 | None:intergenic | 25.0% |
| ! | TATGTACTTGATACCTTTAA+TGG | + | chr1_4:53473751-53473770 | None:intergenic | 25.0% |
| !!! | TAAAGGTATCAAGTACATAA+AGG | - | chr1_4:53473752-53473771 | Msa0169920:intron | 25.0% |
| !! | ATTCCATATGATTCAAGTTT+GGG | - | chr1_4:53473848-53473867 | Msa0169920:intron | 25.0% |
| ! | AATGACACAAGAATTAATGT+GGG | - | chr1_4:53473911-53473930 | Msa0169920:intron | 25.0% |
| ! | ATATTAAATGGGTACGTATT+CGG | - | chr1_4:53473964-53473983 | Msa0169920:intron | 25.0% |
| ! | AAGATTTTGTGTGTTTTGTG+TGG | + | chr1_4:53469094-53469113 | None:intergenic | 30.0% |
| ! | AAAATTACTCTTGTGGGTTA+TGG | + | chr1_4:53469127-53469146 | None:intergenic | 30.0% |
| TGCACTAAAATTACTCTTGT+GGG | + | chr1_4:53469133-53469152 | None:intergenic | 30.0% | |
| ! | CATCAAATTTAGTGTCACTA+TGG | + | chr1_4:53469290-53469309 | None:intergenic | 30.0% |
| !!! | GAATCTTTTTTCAACATTGC+TGG | - | chr1_4:53469312-53469331 | Msa0169920:intron | 30.0% |
| TGAAATGTAACTTCAGCAAA+AGG | - | chr1_4:53469575-53469594 | Msa0169920:CDS | 30.0% | |
| ATATCTAAACCGTGTAACTT+GGG | + | chr1_4:53469647-53469666 | None:intergenic | 30.0% | |
| TTACACGGTTTAGATATCTT+GGG | - | chr1_4:53469650-53469669 | Msa0169920:CDS | 30.0% | |
| !!! | TTCTCCGTCATTTTTTACTA+TGG | + | chr1_4:53469677-53469696 | None:intergenic | 30.0% |
| ! | TCTACCAACTTTTCTACTAT+AGG | + | chr1_4:53470076-53470095 | None:intergenic | 30.0% |
| TTGATCTACTCTTCTTACAA+CGG | + | chr1_4:53470146-53470165 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | - | chr1_4:53470147-53470166 | Msa0169920:CDS | 30.0% | |
| ATTTCTCTAATGGTTCTCTT+AGG | + | chr1_4:53470205-53470224 | None:intergenic | 30.0% | |
| AATCATTCGAAAAGGTTTAG+AGG | - | chr1_4:53470222-53470241 | Msa0169920:CDS | 30.0% | |
| ! | CAATGAGTTGGATCTAAATA+TGG | - | chr1_4:53470246-53470265 | Msa0169920:CDS | 30.0% |
| CCGAGAGATATATTAAAAGT+TGG | + | chr1_4:53470385-53470404 | None:intergenic | 30.0% | |
| TATAATTATCAGGGACATCA+AGG | - | chr1_4:53470452-53470471 | Msa0169920:CDS | 30.0% | |
| ! | TTTGAAGCAAATTAACTCTG+AGG | - | chr1_4:53470535-53470554 | Msa0169920:intron | 30.0% |
| ! | ATTGTTATTAGAGAGAGCAA+AGG | + | chr1_4:53470713-53470732 | None:intergenic | 30.0% |
| TTGCTCTCTCTAATAACAAT+TGG | - | chr1_4:53470713-53470732 | Msa0169920:intron | 30.0% | |
| ATCTCTCCAAATAGAAGAAA+TGG | + | chr1_4:53470956-53470975 | None:intergenic | 30.0% | |
| ! | TAGAAGGTCGCAATTTTATA+GGG | + | chr1_4:53471165-53471184 | None:intergenic | 30.0% |
| ! | TTAGAAGGTCGCAATTTTAT+AGG | + | chr1_4:53471166-53471185 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTAGA+AGG | + | chr1_4:53471622-53471641 | None:intergenic | 30.0% | |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | + | chr1_4:53471225-53471244 | None:intergenic | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | + | chr1_4:53471226-53471245 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTAGA+AGG | - | chr1_4:53471622-53471641 | Msa0169920:intron | 30.0% | |
| TCCTTAACTAATTGAAGCTA+GGG | + | chr1_4:53471681-53471700 | None:intergenic | 30.0% | |
| ATCCTTAACTAATTGAAGCT+AGG | + | chr1_4:53471682-53471701 | None:intergenic | 30.0% | |
| TCATATTAACTAATGCCCTA+AGG | - | chr1_4:53471701-53471720 | Msa0169920:intron | 30.0% | |
| CATATTAACTAATGCCCTAA+GGG | - | chr1_4:53471702-53471721 | Msa0169920:intron | 30.0% | |
| GTACCAAATCTTTATGGATA+AGG | + | chr1_4:53471967-53471986 | None:intergenic | 30.0% | |
| GAATTGGTACCAAATCTTTA+TGG | + | chr1_4:53471973-53471992 | None:intergenic | 30.0% | |
| TAAATATGTTGGGATGATCT+TGG | + | chr1_4:53472018-53472037 | None:intergenic | 30.0% | |
| ! | AAGTTTTCAGAAGGATGTTT+TGG | + | chr1_4:53472413-53472432 | None:intergenic | 30.0% |
| AAAACCTGTCAAACTATTCA+TGG | - | chr1_4:53472537-53472556 | Msa0169920:intron | 30.0% | |
| AAACCTGTCAAACTATTCAT+GGG | - | chr1_4:53472538-53472557 | Msa0169920:intron | 30.0% | |
| CTTGATTATGCCTAATGATT+TGG | + | chr1_4:53472654-53472673 | None:intergenic | 30.0% | |
| CATTGAAATCATCATTGAGT+TGG | - | chr1_4:53472766-53472785 | Msa0169920:intron | 30.0% | |
| ! | AATTCCCAGTTGATGTATAT+TGG | - | chr1_4:53472849-53472868 | Msa0169920:intron | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | - | chr1_4:53472850-53472869 | Msa0169920:intron | 30.0% |
| TAACCCAATATACATCAACT+GGG | + | chr1_4:53472856-53472875 | None:intergenic | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | + | chr1_4:53472857-53472876 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTCCAGGGATAAG+AGG | - | chr1_4:53473064-53473083 | Msa0169920:intron | 30.0% |
| ! | AGGCAGAATTTATCTCATTT+TGG | - | chr1_4:53473084-53473103 | Msa0169920:intron | 30.0% |
| ACATCATAATCAGCAAATTG+AGG | - | chr1_4:53473118-53473137 | Msa0169920:intron | 30.0% | |
| ! | GATTATAGCTTGACACATTT+TGG | - | chr1_4:53473174-53473193 | Msa0169920:intron | 30.0% |
| GGGAAGAAAATACTTCAATT+TGG | + | chr1_4:53473236-53473255 | None:intergenic | 30.0% | |
| ! | GTATTTTCTTCCCATATTGA+TGG | - | chr1_4:53473243-53473262 | Msa0169920:intron | 30.0% |
| !! | GGAAATTATGGAAGTGTTTA+AGG | - | chr1_4:53473334-53473353 | Msa0169920:intron | 30.0% |
| TGTTTAAGTATGTACAAGGT+TGG | - | chr1_4:53473460-53473479 | Msa0169920:CDS | 30.0% | |
| TCAAAATTGAGATGTCTTCT+TGG | + | chr1_4:53473581-53473600 | None:intergenic | 30.0% | |
| ! | CATTCCATATGATTCAAGTT+TGG | - | chr1_4:53473847-53473866 | Msa0169920:intron | 30.0% |
| ! | TTCCATATGATTCAAGTTTG+GGG | - | chr1_4:53473849-53473868 | Msa0169920:intron | 30.0% |
| !! | CATTGATTCTTCTTTGGATT+TGG | + | chr1_4:53473895-53473914 | None:intergenic | 30.0% |
| !! | TTGTGTCATTGATTCTTCTT+TGG | + | chr1_4:53473901-53473920 | None:intergenic | 30.0% |
| CAATGACACAAGAATTAATG+TGG | - | chr1_4:53473910-53473929 | Msa0169920:intron | 30.0% | |
| GAAAAGTCTGTCATCATTTA+TGG | - | chr1_4:53474099-53474118 | Msa0169920:intron | 30.0% | |
| CATTTATGGAGGTAAAGATA+AGG | - | chr1_4:53474113-53474132 | Msa0169920:intron | 30.0% | |
| ! | TTCAATTGACCTATTTTGCT+TGG | - | chr1_4:53474206-53474225 | Msa0169920:intron | 30.0% |
| CAAAAGTTGTTAACCACATT+TGG | + | chr1_4:53474243-53474262 | None:intergenic | 30.0% | |
| ! | CAAATGTGGTTAACAACTTT+TGG | - | chr1_4:53474241-53474260 | Msa0169920:intron | 30.0% |
| !! | GGTTAACAACTTTTGGAAAA+AGG | - | chr1_4:53474248-53474267 | Msa0169920:intron | 30.0% |
| TTTCTTACAAGAATGAGACT+GGG | - | chr1_4:53474340-53474359 | Msa0169920:intron | 30.0% | |
| ATCTTTCCATTTGTCAAACT+CGG | + | chr1_4:53474436-53474455 | None:intergenic | 30.0% | |
| ATTTAGAGAACATCATCACA+AGG | - | chr1_4:53474485-53474504 | Msa0169920:intron | 30.0% | |
| ! | GGAATTTTTCCAGCAATATT+GGG | + | chr1_4:53474549-53474568 | None:intergenic | 30.0% |
| ! | TGGAATTTTTCCAGCAATAT+TGG | + | chr1_4:53474550-53474569 | None:intergenic | 30.0% |
| TCACAAATGCAACTAGAATA+AGG | - | chr1_4:53474836-53474855 | Msa0169920:exon | 30.0% | |
| GTGCACTAAAATTACTCTTG+TGG | + | chr1_4:53469134-53469153 | None:intergenic | 35.0% | |
| CAGACATGGTTAAATGGTTA+TGG | + | chr1_4:53469230-53469249 | None:intergenic | 35.0% | |
| CAGAACGTTATCAACAACAT+GGG | + | chr1_4:53469358-53469377 | None:intergenic | 35.0% | |
| ATATCATACCCCAAGTTACA+CGG | - | chr1_4:53469635-53469654 | Msa0169920:CDS | 35.0% | |
| TATCTAAACCGTGTAACTTG+GGG | + | chr1_4:53469646-53469665 | None:intergenic | 35.0% | |
| GATATCTAAACCGTGTAACT+TGG | + | chr1_4:53469648-53469667 | None:intergenic | 35.0% | |
| GTTACACGGTTTAGATATCT+TGG | - | chr1_4:53469649-53469668 | Msa0169920:CDS | 35.0% | |
| GGGTCCATAGTAAAAAATGA+CGG | - | chr1_4:53469670-53469689 | Msa0169920:CDS | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | - | chr1_4:53469775-53469794 | Msa0169920:CDS | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | + | chr1_4:53469784-53469803 | None:intergenic | 35.0% | |
| AGACTAGACATGATAGGATT+AGG | - | chr1_4:53469923-53469942 | Msa0169920:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | - | chr1_4:53470069-53470088 | Msa0169920:CDS | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | - | chr1_4:53470089-53470108 | Msa0169920:CDS | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | - | chr1_4:53470094-53470113 | Msa0169920:CDS | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | - | chr1_4:53470150-53470169 | Msa0169920:CDS | 35.0% | |
| AATCAGGTTAAAAGAGGTAG+AGG | - | chr1_4:53470175-53470194 | Msa0169920:CDS | 35.0% | |
| ! | TGGTTTTTGATAGAACACTC+TGG | - | chr1_4:53470266-53470285 | Msa0169920:CDS | 35.0% |
| ATTTGCTTCAAAGTACACAG+CGG | + | chr1_4:53470527-53470546 | None:intergenic | 35.0% | |
| !! | AAGACTAAGAGCATCTCTAA+TGG | - | chr1_4:53470646-53470665 | Msa0169920:CDS | 35.0% |
| GGAGAGACTAATAAATGTAG+AGG | + | chr1_4:53470935-53470954 | None:intergenic | 35.0% | |
| GTCTCTCCATTTCTTCTATT+TGG | - | chr1_4:53470947-53470966 | Msa0169920:intron | 35.0% | |
| ! | CAAGTTTAGAGCACTATGAA+AGG | + | chr1_4:53471484-53471503 | None:intergenic | 35.0% |
| GCTAGGGTTAAATATGTTTC+TGG | + | chr1_4:53471665-53471684 | None:intergenic | 35.0% | |
| ACCCTAGCTTCAATTAGTTA+AGG | - | chr1_4:53471677-53471696 | Msa0169920:intron | 35.0% | |
| TCCTTAACATGTGTTCATCA+AGG | - | chr1_4:53471833-53471852 | Msa0169920:intron | 35.0% | |
| CCTTAACATGTGTTCATCAA+GGG | - | chr1_4:53471834-53471853 | Msa0169920:intron | 35.0% | |
| ! | GGAAAGGACAAAAGAGTTTT+CGG | + | chr1_4:53471875-53471894 | None:intergenic | 35.0% |
| ! | TTTGAAGCGATTTCAAAGGA+AGG | + | chr1_4:53471896-53471915 | None:intergenic | 35.0% |
| ! | TGTGTTTGAAGCGATTTCAA+AGG | + | chr1_4:53471900-53471919 | None:intergenic | 35.0% |
| ! | TTGTGGGCTAATTTGAGAAA+AGG | + | chr1_4:53471928-53471947 | None:intergenic | 35.0% |
| ! | AACTATTCATGGGTTGCAAA+AGG | - | chr1_4:53472548-53472567 | Msa0169920:intron | 35.0% |
| !!! | CGATGTTTTTTCAATGCTTC+AGG | + | chr1_4:53472698-53472717 | None:intergenic | 35.0% |
| AGAATTTGATCAAGGCAACT+TGG | - | chr1_4:53472738-53472757 | Msa0169920:intron | 35.0% | |
| TCACAATGCACTATACAGAT+TGG | - | chr1_4:53473150-53473169 | Msa0169920:intron | 35.0% | |
| CAGAGTATAACAAGTTACTC+AGG | - | chr1_4:53473291-53473310 | Msa0169920:intron | 35.0% | |
| AACACTTCCATAATTTCCGT+CGG | + | chr1_4:53473332-53473351 | None:intergenic | 35.0% | |
| TTAGTCGAACCATCATAGAT+GGG | + | chr1_4:53473392-53473411 | None:intergenic | 35.0% | |
| TTTAGTCGAACCATCATAGA+TGG | + | chr1_4:53473393-53473412 | None:intergenic | 35.0% | |
| !! | TATCGAAGTGCTGAAAAAGA+AGG | - | chr1_4:53473521-53473540 | Msa0169920:CDS | 35.0% |
| GTTCTTGTTCATTTCAACTC+TGG | - | chr1_4:53473548-53473567 | Msa0169920:intron | 35.0% | |
| AAGTGATGCAAAACATACCA+AGG | + | chr1_4:53473723-53473742 | None:intergenic | 35.0% | |
| AGGTATCAAGTACATAAAGG+AGG | - | chr1_4:53473755-53473774 | Msa0169920:intron | 35.0% | |
| GGACTCAACACAAGAAATAA+AGG | + | chr1_4:53473801-53473820 | None:intergenic | 35.0% | |
| TGATGTAGAATCTTTCCTTG+TGG | + | chr1_4:53473822-53473841 | None:intergenic | 35.0% | |
| ! | ATTCAAGTTTGGGGAGTAAA+GGG | - | chr1_4:53473858-53473877 | Msa0169920:intron | 35.0% |
| ! | CTTCTTTGGATTTGGAGTAA+GGG | + | chr1_4:53473887-53473906 | None:intergenic | 35.0% |
| ! | TCTTCTTTGGATTTGGAGTA+AGG | + | chr1_4:53473888-53473907 | None:intergenic | 35.0% |
| AAGTCTGTCATCATTTATGG+AGG | - | chr1_4:53474102-53474121 | Msa0169920:intron | 35.0% | |
| ATGGAGGTAAAGATAAGGAA+TGG | - | chr1_4:53474118-53474137 | Msa0169920:intron | 35.0% | |
| CAACAATTCACTAAGTATGC+TGG | - | chr1_4:53474144-53474163 | Msa0169920:intron | 35.0% | |
| !! | GTTTGTTTTCTCATGCATCT+TGG | + | chr1_4:53474292-53474311 | None:intergenic | 35.0% |
| AACAAACACTGTTACACAAC+AGG | - | chr1_4:53474305-53474324 | Msa0169920:intron | 35.0% | |
| CTTTCTTACAAGAATGAGAC+TGG | - | chr1_4:53474339-53474358 | Msa0169920:intron | 35.0% | |
| ATTGTGACTTCTGTTGATCA+TGG | - | chr1_4:53474387-53474406 | Msa0169920:intron | 35.0% | |
| TTGTGACTTCTGTTGATCAT+GGG | - | chr1_4:53474388-53474407 | Msa0169920:intron | 35.0% | |
| GTTTGACAAATGGAAAGATG+TGG | - | chr1_4:53474437-53474456 | Msa0169920:intron | 35.0% | |
| AAAGATGTGGCGATCAATAA+GGG | - | chr1_4:53474450-53474469 | Msa0169920:intron | 35.0% | |
| TAGGTGAGAGCAAATATGAA+CGG | + | chr1_4:53474520-53474539 | None:intergenic | 35.0% | |
| TAATAAACACTTCCATTGCG+CGG | + | chr1_4:53474599-53474618 | None:intergenic | 35.0% | |
| ! | CAATGATAATGCAAGACTCA+TGG | + | chr1_4:53474804-53474823 | None:intergenic | 35.0% |
| TGTGAATAAGTGATCGCACT+AGG | + | chr1_4:53469185-53469204 | None:intergenic | 40.0% | |
| GTGCGATCACTTATTCACAT+TGG | - | chr1_4:53469186-53469205 | Msa0169920:three_prime_UTR | 40.0% | |
| GCTCATCAGACATGGTTAAA+TGG | + | chr1_4:53469236-53469255 | None:intergenic | 40.0% | |
| CAAAATGTGCTCATCAGACA+TGG | + | chr1_4:53469244-53469263 | None:intergenic | 40.0% | |
| ! | CATGTCTGATGAGCACATTT+TGG | - | chr1_4:53469242-53469261 | Msa0169920:three_prime_UTR | 40.0% |
| GCAGAACGTTATCAACAACA+TGG | + | chr1_4:53469359-53469378 | None:intergenic | 40.0% | |
| ! | GCAGATGATATAGTCTTGCT+TGG | - | chr1_4:53469457-53469476 | Msa0169920:CDS | 40.0% |
| AACTTCAGCAAAAGGAGAAG+TGG | - | chr1_4:53469583-53469602 | Msa0169920:CDS | 40.0% | |
| ACTTCAGCAAAAGGAGAAGT+GGG | - | chr1_4:53469584-53469603 | Msa0169920:CDS | 40.0% | |
| GTACATCATCGTATTCAAGC+CGG | - | chr1_4:53469709-53469728 | Msa0169920:CDS | 40.0% | |
| TACATCATCGTATTCAAGCC+GGG | - | chr1_4:53469710-53469729 | Msa0169920:CDS | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | - | chr1_4:53469917-53469936 | Msa0169920:intron | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | + | chr1_4:53470137-53470156 | None:intergenic | 40.0% | |
| AGATCAAATGGAGGAGAATC+AGG | - | chr1_4:53470159-53470178 | Msa0169920:CDS | 40.0% | |
| GAGGAGAATCAGGTTAAAAG+AGG | - | chr1_4:53470169-53470188 | Msa0169920:CDS | 40.0% | |
| AGGTTTAGAGGTCAATGAGT+TGG | - | chr1_4:53470234-53470253 | Msa0169920:CDS | 40.0% | |
| AATTATCAGGGACATCAAGG+AGG | - | chr1_4:53470455-53470474 | Msa0169920:CDS | 40.0% | |
| ! | GTGGATTAATGTTATCCAGG+TGG | + | chr1_4:53470487-53470506 | None:intergenic | 40.0% |
| !! | CTGGTGGATTAATGTTATCC+AGG | + | chr1_4:53470490-53470509 | None:intergenic | 40.0% |
| ! | AATGGGTTCTACCACTAAGT+GGG | + | chr1_4:53471013-53471032 | None:intergenic | 40.0% |
| !! | TAATGGGTTCTACCACTAAG+TGG | + | chr1_4:53471014-53471033 | None:intergenic | 40.0% |
| CCCTTGATGAACACATGTTA+AGG | + | chr1_4:53471837-53471856 | None:intergenic | 40.0% | |
| AGCGATTTCAAAGGAAGGAA+AGG | + | chr1_4:53471891-53471910 | None:intergenic | 40.0% | |
| TTAGAGCTGTAGCGAAGAAT+TGG | + | chr1_4:53471989-53472008 | None:intergenic | 40.0% | |
| AGATGCGCAACTAGATTAGT+TGG | + | chr1_4:53472161-53472180 | None:intergenic | 40.0% | |
| ! | TTGTAAGCTATTTCCTCACC+TGG | + | chr1_4:53472497-53472516 | None:intergenic | 40.0% |
| CAACCCATGAATAGTTTGAC+AGG | + | chr1_4:53472544-53472563 | None:intergenic | 40.0% | |
| CCAGAAATCTCCATACTCAA+GGG | + | chr1_4:53472597-53472616 | None:intergenic | 40.0% | |
| GAACCACTTGCCAAATCATT+AGG | - | chr1_4:53472641-53472660 | Msa0169920:intron | 40.0% | |
| ! | ATGCCTAATGATTTGGCAAG+TGG | + | chr1_4:53472647-53472666 | None:intergenic | 40.0% |
| GGAGCTCAAGAATTTGATCA+AGG | - | chr1_4:53472730-53472749 | Msa0169920:intron | 40.0% | |
| CTGAGCAACAATTGCAACAA+TGG | + | chr1_4:53472885-53472904 | None:intergenic | 40.0% | |
| !! | AGCACTGATGTGATACATCA+TGG | - | chr1_4:53472946-53472965 | Msa0169920:intron | 40.0% |
| TAAATTCTGCCTCTTATCCC+TGG | + | chr1_4:53473076-53473095 | None:intergenic | 40.0% | |
| ACACTTCCATAATTTCCGTC+GGG | + | chr1_4:53473331-53473350 | None:intergenic | 40.0% | |
| TGATGGTTCGACTAAAACAC+TGG | - | chr1_4:53473397-53473416 | Msa0169920:intron | 40.0% | |
| AAGCCAACACAAGATTGTGT+GGG | - | chr1_4:53473632-53473651 | Msa0169920:intron | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | + | chr1_4:53473660-53473679 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | + | chr1_4:53473661-53473680 | None:intergenic | 40.0% | |
| !! | CTTTGAAGTCAAAGATGCCT+TGG | - | chr1_4:53473703-53473722 | Msa0169920:intron | 40.0% |
| CATCACTTTGCACCCATTAA+AGG | - | chr1_4:53473735-53473754 | Msa0169920:intron | 40.0% | |
| TTTCTTGTGTTGAGTCCACA+AGG | - | chr1_4:53473804-53473823 | Msa0169920:intron | 40.0% | |
| CTCCCCAAACTTGAATCATA+TGG | + | chr1_4:53473854-53473873 | None:intergenic | 40.0% | |
| ! | GATTCAAGTTTGGGGAGTAA+AGG | - | chr1_4:53473857-53473876 | Msa0169920:intron | 40.0% |
| TATATCAATGTCAGCCAGCA+GGG | + | chr1_4:53473943-53473962 | None:intergenic | 40.0% | |
| TTATATCAATGTCAGCCAGC+AGG | + | chr1_4:53473944-53473963 | None:intergenic | 40.0% | |
| ! | AATAGCGGCATCATTTGCTA+GGG | + | chr1_4:53474172-53474191 | None:intergenic | 40.0% |
| TAATAGCGGCATCATTTGCT+AGG | + | chr1_4:53474173-53474192 | None:intergenic | 40.0% | |
| AGTCTTCGTCTGCTTAATAG+CGG | + | chr1_4:53474187-53474206 | None:intergenic | 40.0% | |
| GTTGAGACTCCAAGCAAAAT+AGG | + | chr1_4:53474218-53474237 | None:intergenic | 40.0% | |
| TTACAAGAATGAGACTGGGT+GGG | - | chr1_4:53474344-53474363 | Msa0169920:intron | 40.0% | |
| AGAAGTCACAATAGACCCTT+TGG | + | chr1_4:53474379-53474398 | None:intergenic | 40.0% | |
| GAAAGATGTGGCGATCAATA+AGG | - | chr1_4:53474449-53474468 | Msa0169920:intron | 40.0% | |
| CAGCAATATTGGGAATCTCT+AGG | + | chr1_4:53474539-53474558 | None:intergenic | 40.0% | |
| CTAGAGATTCCCAATATTGC+TGG | - | chr1_4:53474537-53474556 | Msa0169920:intron | 40.0% | |
| TCTGGACACTCGATAAAATC+TGG | + | chr1_4:53474570-53474589 | None:intergenic | 40.0% | |
| ! | AGCTACAAGTGTTGCCATAA+CGG | - | chr1_4:53474618-53474637 | Msa0169920:intron | 40.0% |
| CTCATGGCTACATTGCTTAA+GGG | + | chr1_4:53474788-53474807 | None:intergenic | 40.0% | |
| ACTCATGGCTACATTGCTTA+AGG | + | chr1_4:53474789-53474808 | None:intergenic | 40.0% | |
| ! | CAACATGGGTTGAACGTGTA+AGG | + | chr1_4:53469344-53469363 | None:intergenic | 45.0% |
| TAAACGAGAGGCTAGAGACT+TGG | - | chr1_4:53469497-53469516 | Msa0169920:CDS | 45.0% | |
| TCTACCTTGGAGGTGAAAGT+TGG | - | chr1_4:53469607-53469626 | Msa0169920:CDS | 45.0% | |
| ATCTCCAACTTTCACCTCCA+AGG | + | chr1_4:53469614-53469633 | None:intergenic | 45.0% | |
| TCTTCTCCATTTCAACCACC+CGG | + | chr1_4:53469731-53469750 | None:intergenic | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | - | chr1_4:53469736-53469755 | Msa0169920:CDS | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | + | chr1_4:53469755-53469774 | None:intergenic | 45.0% | |
| ACCGGCAATGTTGTATGGTA+CGG | - | chr1_4:53469822-53469841 | Msa0169920:CDS | 45.0% | |
| TCCGTACCATACAACATTGC+CGG | + | chr1_4:53469826-53469845 | None:intergenic | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | - | chr1_4:53469830-53469849 | Msa0169920:CDS | 45.0% | |
| ! | GTTGTATGGTACGGAGTGTT+GGG | - | chr1_4:53469831-53469850 | Msa0169920:CDS | 45.0% |
| CGCTTACTTTACTCTCGTGT+TGG | + | chr1_4:53469867-53469886 | None:intergenic | 45.0% | |
| CGAGAGTAAAGTAAGCGTAG+CGG | - | chr1_4:53469870-53469889 | Msa0169920:CDS | 45.0% | |
| AGGATGTTGTGTTGGATGAG+TGG | - | chr1_4:53469898-53469917 | Msa0169920:CDS | 45.0% | |
| CTCTCTCTCTCTCTCTCTAA+TGG | + | chr1_4:53469956-53469975 | None:intergenic | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | + | chr1_4:53470136-53470155 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1_4:53470315-53470334 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1_4:53470316-53470335 | None:intergenic | 45.0% |
| ! | TCAAGCCTTATCCCACTAAG+TGG | + | chr1_4:53470317-53470336 | None:intergenic | 45.0% |
| ! | TAGTAGTGGAACCCACTTAG+TGG | - | chr1_4:53470999-53471018 | Msa0169920:intron | 45.0% |
| ATGATGGCAGATGTCATGCA+AGG | - | chr1_4:53472469-53472488 | Msa0169920:intron | 45.0% | |
| !! | TCTGCTTTTGCCCTTGAGTA+TGG | - | chr1_4:53472584-53472603 | Msa0169920:intron | 45.0% |
| CCCTTGAGTATGGAGATTTC+TGG | - | chr1_4:53472594-53472613 | Msa0169920:intron | 45.0% | |
| GCCAGAAATCTCCATACTCA+AGG | + | chr1_4:53472598-53472617 | None:intergenic | 45.0% | |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | + | chr1_4:53472638-53472657 | None:intergenic | 45.0% |
| ACTGGGAATTGTTCCAAAGC+TGG | + | chr1_4:53472839-53472858 | None:intergenic | 45.0% | |
| TCAAACCCCGACGGAAATTA+TGG | - | chr1_4:53473322-53473341 | Msa0169920:intron | 45.0% | |
| CACTTCCATAATTTCCGTCG+GGG | + | chr1_4:53473330-53473349 | None:intergenic | 45.0% | |
| ! | CCATCATAGATGGGAGCTTT+TGG | + | chr1_4:53473383-53473402 | None:intergenic | 45.0% |
| CCAAAAGCTCCCATCTATGA+TGG | - | chr1_4:53473380-53473399 | Msa0169920:intron | 45.0% | |
| GAAGCCAACACAAGATTGTG+TGG | - | chr1_4:53473631-53473650 | Msa0169920:intron | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | + | chr1_4:53473638-53473657 | None:intergenic | 45.0% | |
| CTTACAAGAATGAGACTGGG+TGG | - | chr1_4:53474343-53474362 | Msa0169920:intron | 45.0% | |
| GGTGGGCAATTGTAACCAAA+GGG | - | chr1_4:53474361-53474380 | Msa0169920:intron | 45.0% | |
| CAGTGTCCGAGTTTGACAAA+TGG | - | chr1_4:53474427-53474446 | Msa0169920:intron | 45.0% | |
| TAAGGCCAATGGCAAGCATT+AGG | - | chr1_4:53474644-53474663 | Msa0169920:CDS | 45.0% | |
| AGCTACCTAATGCTTGCCAT+TGG | + | chr1_4:53474652-53474671 | None:intergenic | 45.0% | |
| CAAGCATTAGGTAGCTTCAC+TGG | - | chr1_4:53474656-53474675 | Msa0169920:CDS | 45.0% | |
| !! | TAGGTAGCTTCACTGGTCTT+TGG | - | chr1_4:53474663-53474682 | Msa0169920:CDS | 45.0% |
| !! | AATAAAATGAAAAAAAAAAA+TGG | + | chr1_4:53469409-53469428 | None:intergenic | 5.0% |
| !!! | TGTTATAATTTTATTTTAAA+TGG | + | chr1_4:53472069-53472088 | None:intergenic | 5.0% |
| ! | TAGTCTTGCTTGGTGAGTCG+AGG | - | chr1_4:53469467-53469486 | Msa0169920:CDS | 50.0% |
| ! | AGTCTTGCTTGGTGAGTCGA+GGG | - | chr1_4:53469468-53469487 | Msa0169920:CDS | 50.0% |
| ! | AGGCAAGCCTTAGAAGCGTA+TGG | - | chr1_4:53469520-53469539 | Msa0169920:CDS | 50.0% |
| ACTCCGTCTTGCTTCTACTC+AGG | + | chr1_4:53469552-53469571 | None:intergenic | 50.0% | |
| AAGGAGAAGTGGGTCTACCT+TGG | - | chr1_4:53469594-53469613 | Msa0169920:CDS | 50.0% | |
| ATCATCGTATTCAAGCCGGG+TGG | - | chr1_4:53469713-53469732 | Msa0169920:CDS | 50.0% | |
| TTCAAGCCGGGTGGTTGAAA+TGG | - | chr1_4:53469722-53469741 | Msa0169920:CDS | 50.0% | |
| CTATCGAACAGCAGTCAGAC+CGG | - | chr1_4:53469804-53469823 | Msa0169920:CDS | 50.0% | |
| GTCAGACCGGCAATGTTGTA+TGG | - | chr1_4:53469817-53469836 | Msa0169920:CDS | 50.0% | |
| ! | AAGTAAGCGTAGCGGAGATG+AGG | - | chr1_4:53469878-53469897 | Msa0169920:CDS | 50.0% |
| CGGAGATGAGGATGTTGTGT+TGG | - | chr1_4:53469890-53469909 | Msa0169920:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+TGG | - | chr1_4:53469958-53469977 | Msa0169920:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGT+GGG | - | chr1_4:53470043-53470062 | Msa0169920:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGTG+GGG | - | chr1_4:53470044-53470063 | Msa0169920:CDS | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr1_4:53470311-53470330 | None:intergenic | 50.0% | |
| ! | TGGCAAGTGGTTCTGTTGGT+TGG | + | chr1_4:53472634-53472653 | None:intergenic | 50.0% |
| GCTTCAGGCTTCGAAAGTTG+AGG | + | chr1_4:53472683-53472702 | None:intergenic | 50.0% | |
| CAACTCGCGTCATGACATCA+AGG | - | chr1_4:53472796-53472815 | Msa0169920:intron | 50.0% | |
| GAAGCTCTTTCAAACCCCGA+CGG | - | chr1_4:53473313-53473332 | Msa0169920:intron | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | - | chr1_4:53473644-53473663 | Msa0169920:intron | 50.0% | |
| !! | AATGTGGGTTGATTCCCTGC+TGG | - | chr1_4:53473926-53473945 | Msa0169920:intron | 50.0% |
| GGAGTCTCAACAGCCAAATG+TGG | - | chr1_4:53474227-53474246 | Msa0169920:intron | 50.0% | |
| GGGTGGGCAATTGTAACCAA+AGG | - | chr1_4:53474360-53474379 | Msa0169920:intron | 50.0% | |
| GTGTTGCCATAACGGCGATA+AGG | - | chr1_4:53474626-53474645 | Msa0169920:intron | 50.0% | |
| !! | CATTGGCCTTATCGCCGTTA+TGG | + | chr1_4:53474635-53474654 | None:intergenic | 50.0% |
| CATAACGGCGATAAGGCCAA+TGG | - | chr1_4:53474633-53474652 | Msa0169920:intron | 50.0% | |
| !! | GCTTCACTGGTCTTTGGCAT+TGG | - | chr1_4:53474669-53474688 | Msa0169920:CDS | 50.0% |
| CGAGGGAGGAGTTAAACGAG+AGG | - | chr1_4:53469485-53469504 | Msa0169920:CDS | 55.0% | |
| ACGAGAGGCTAGAGACTTGG+AGG | - | chr1_4:53469500-53469519 | Msa0169920:CDS | 55.0% | |
| GCGGAAGCCATACGCTTCTA+AGG | + | chr1_4:53469530-53469549 | None:intergenic | 55.0% | |
| CCGTCTTGCTTCTACTCAGG+CGG | + | chr1_4:53469549-53469568 | None:intergenic | 55.0% | |
| CCGCCTGAGTAGAAGCAAGA+CGG | - | chr1_4:53469546-53469565 | Msa0169920:CDS | 55.0% | |
| GAGAAGTGGGTCTACCTTGG+AGG | - | chr1_4:53469597-53469616 | Msa0169920:CDS | 55.0% | |
| !! | GTATGGTACGGAGTGTTGGG+TGG | - | chr1_4:53469834-53469853 | Msa0169920:CDS | 55.0% |
| GAGAGAGAGAGAGAGAGTGG+GGG | - | chr1_4:53470045-53470064 | Msa0169920:CDS | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1_4:53470303-53470322 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1_4:53470302-53470321 | Msa0169920:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1_4:53470303-53470322 | Msa0169920:CDS | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1_4:53470309-53470328 | Msa0169920:CDS | 55.0% | |
| TCAGGGACATCAAGGAGGTC+TGG | - | chr1_4:53470460-53470479 | Msa0169920:CDS | 55.0% | |
| GGTGAAGTGAAGCTAGCTGG+TGG | + | chr1_4:53470506-53470525 | None:intergenic | 55.0% | |
| AGCGGTGAAGTGAAGCTAGC+TGG | + | chr1_4:53470509-53470528 | None:intergenic | 55.0% | |
| ! | CAGATGTCATGCAAGGCACC+AGG | - | chr1_4:53472476-53472495 | Msa0169920:intron | 55.0% |
| TCCAGCTCTTGCACCAGCTT+TGG | - | chr1_4:53472823-53472842 | Msa0169920:intron | 55.0% | |
| TCCAAAGCTGGTGCAAGAGC+TGG | + | chr1_4:53472827-53472846 | None:intergenic | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | - | chr1_4:53473647-53473666 | Msa0169920:intron | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | - | chr1_4:53473652-53473671 | Msa0169920:intron | 55.0% | |
| TCCAGATTGTCACCGCGCAA+TGG | - | chr1_4:53474584-53474603 | Msa0169920:intron | 55.0% | |
| TCCATTGCGCGGTGACAATC+TGG | + | chr1_4:53474588-53474607 | None:intergenic | 55.0% | |
| ! | CTTGCTTGGTGAGTCGAGGG+AGG | - | chr1_4:53469471-53469490 | Msa0169920:CDS | 60.0% |
| TCAAGGAGGTCTGGACCACC+TGG | - | chr1_4:53470469-53470488 | Msa0169920:CDS | 60.0% | |
| ! | GTCATGCAAGGCACCAGGTG+AGG | - | chr1_4:53472481-53472500 | Msa0169920:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 53469085 | 53474931 | 53469085 | ID=Msa0169920;Name=Msa0169920 |
| chr1_4 | mRNA | 53469085 | 53474931 | 53469085 | ID=Msa0169920-mRNA-1;Parent=Msa0169920;Name=Msa0169920-mRNA-1;_AED=0.06;_eAED=0.06;_QI=89|1|1|1|0.71|0.87|8|246|669 |
| chr1_4 | exon | 53469085 | 53469330 | 53469085 | ID=Msa0169920-mRNA-1:exon:15917;Parent=Msa0169920-mRNA-1 |
| chr1_4 | exon | 53469351 | 53469923 | 53469351 | ID=Msa0169920-mRNA-1:exon:15916;Parent=Msa0169920-mRNA-1 |
| chr1_4 | exon | 53470042 | 53470500 | 53470042 | ID=Msa0169920-mRNA-1:exon:15915;Parent=Msa0169920-mRNA-1 |
| chr1_4 | exon | 53470598 | 53470731 | 53470598 | ID=Msa0169920-mRNA-1:exon:15914;Parent=Msa0169920-mRNA-1 |
| chr1_4 | exon | 53470845 | 53470939 | 53470845 | ID=Msa0169920-mRNA-1:exon:15913;Parent=Msa0169920-mRNA-1 |
| chr1_4 | exon | 53471089 | 53471537 | 53471089 | ID=Msa0169920-mRNA-1:exon:15912;Parent=Msa0169920-mRNA-1 |
| chr1_4 | exon | 53473460 | 53473552 | 53473460 | ID=Msa0169920-mRNA-1:exon:15911;Parent=Msa0169920-mRNA-1 |
| chr1_4 | exon | 53474636 | 53474931 | 53474636 | ID=Msa0169920-mRNA-1:exon:15910;Parent=Msa0169920-mRNA-1 |
| chr1_4 | five_prime_UTR | 53474843 | 53474931 | 53474843 | ID=Msa0169920-mRNA-1:five_prime_utr;Parent=Msa0169920-mRNA-1 |
| chr1_4 | CDS | 53474636 | 53474842 | 53474636 | ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1 |
| chr1_4 | CDS | 53473460 | 53473552 | 53473460 | ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1 |
| chr1_4 | CDS | 53471089 | 53471537 | 53471089 | ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1 |
| chr1_4 | CDS | 53470845 | 53470939 | 53470845 | ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1 |
| chr1_4 | CDS | 53470598 | 53470731 | 53470598 | ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1 |
| chr1_4 | CDS | 53470042 | 53470500 | 53470042 | ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1 |
| chr1_4 | CDS | 53469351 | 53469923 | 53469351 | ID=Msa0169920-mRNA-1:cds;Parent=Msa0169920-mRNA-1 |
| chr1_4 | three_prime_UTR | 53469085 | 53469330 | 53469085 | ID=Msa0169920-mRNA-1:three_prime_utr;Parent=Msa0169920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
