Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077130 | XP_003590763.1 | 97.309 | 669 | 18 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077130 | sp|Q9SS87|SEOB_ARATH | 31.300 | 623 | 349 | 22 | 109 | 661 | 116 | 729 | 6.79e-87 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077130 | E2FKJ5 | 97.309 | 669 | 18 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1342 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029880 | Msa0077130 | 0.872908 | 2.214484e-67 | -8.615850e-47 |
| Msa0029890 | Msa0077130 | 0.855189 | 7.453431e-62 | -8.615850e-47 |
| Msa0029900 | Msa0077130 | 0.918618 | 1.247799e-86 | -8.615850e-47 |
| Msa0029910 | Msa0077130 | 0.878086 | 3.733197e-69 | -8.615850e-47 |
| Msa0077120 | Msa0077130 | 0.884877 | 1.316805e-71 | -8.615850e-47 |
| Msa0077130 | Msa0077140 | 0.855155 | 7.626282e-62 | -8.615850e-47 |
| Msa0077130 | Msa0125090 | 0.829580 | 4.753009e-55 | -8.615850e-47 |
| Msa0077130 | Msa0125100 | 0.824442 | 8.055564e-54 | -8.615850e-47 |
| Msa0077130 | Msa0125110 | 0.863831 | 1.879973e-64 | -8.615850e-47 |
| Msa0077130 | Msa0125120 | 0.828911 | 6.908807e-55 | -8.615850e-47 |
| Msa0077130 | Msa0169860 | 0.862910 | 3.625680e-64 | -8.615850e-47 |
| Msa0077130 | Msa0169870 | 0.861647 | 8.858203e-64 | -8.615850e-47 |
| Msa0077130 | Msa0169920 | 0.883610 | 3.879901e-71 | -8.615850e-47 |
| Msa0077130 | Msa0170090 | 0.943058 | 2.380122e-102 | -8.615850e-47 |
| Msa0077130 | Msa0220420 | 0.804782 | 1.830731e-49 | -8.615850e-47 |
| Msa0077130 | Msa0620790 | 0.802643 | 5.088797e-49 | -8.615850e-47 |
| Msa0077130 | Msa0664850 | 0.802828 | 4.660843e-49 | -8.615850e-47 |
| Msa0077130 | Msa0730270 | 0.812787 | 3.556007e-51 | -8.615850e-47 |
| Msa0077130 | Msa1098560 | 0.808969 | 2.384849e-50 | -8.615850e-47 |
| Msa0077130 | Msa1214880 | 0.801739 | 7.812653e-49 | -8.615850e-47 |
| Msa0077130 | Msa1460890 | 0.816013 | 6.882111e-52 | -8.615850e-47 |
| Msa0077130 | Msa1464160 | 0.832150 | 1.113656e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077130 | MtrunA17_Chr1g0186851 | 97.309 | 669 | 18 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1342 |
| Msa0077130 | MtrunA17_Chr1g0186861 | 83.107 | 663 | 110 | 1 | 1 | 661 | 1 | 663 | 0.0 | 1139 |
| Msa0077130 | MtrunA17_Chr1g0187041 | 77.477 | 666 | 148 | 1 | 1 | 664 | 1 | 666 | 0.0 | 1041 |
| Msa0077130 | MtrunA17_Chr1g0186911 | 84.135 | 561 | 89 | 0 | 101 | 661 | 1 | 561 | 0.0 | 976 |
| Msa0077130 | MtrunA17_Chr1g0186841 | 58.982 | 668 | 266 | 6 | 5 | 669 | 9 | 671 | 0.0 | 809 |
| Msa0077130 | MtrunA17_Chr1g0165791 | 35.982 | 667 | 403 | 10 | 20 | 668 | 25 | 685 | 1.25e-148 | 447 |
| Msa0077130 | MtrunA17_Chr7g0226571 | 33.815 | 692 | 399 | 19 | 24 | 661 | 25 | 711 | 5.32e-111 | 351 |
| Msa0077130 | MtrunA17_Chr1g0187001 | 31.587 | 668 | 393 | 16 | 20 | 663 | 11 | 638 | 2.23e-103 | 328 |
| Msa0077130 | MtrunA17_Chr1g0186991 | 31.297 | 671 | 402 | 17 | 20 | 663 | 31 | 669 | 1.64e-100 | 322 |
| Msa0077130 | MtrunA17_Chr3g0116601 | 31.241 | 685 | 416 | 19 | 23 | 659 | 27 | 704 | 8.96e-97 | 313 |
| Msa0077130 | MtrunA17_Chr8g0381301 | 30.880 | 693 | 419 | 22 | 22 | 660 | 17 | 703 | 1.88e-96 | 312 |
| Msa0077130 | MtrunA17_Chr1g0186981 | 29.925 | 665 | 406 | 14 | 20 | 660 | 34 | 662 | 4.03e-93 | 302 |
| Msa0077130 | MtrunA17_Chr1g0186901 | 79.612 | 103 | 19 | 1 | 1 | 101 | 1 | 103 | 9.43e-49 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077130 | AT3G01680.1 | 31.300 | 623 | 349 | 22 | 109 | 661 | 116 | 729 | 6.90e-88 | 290 |
| Msa0077130 | AT3G01670.1 | 25.847 | 708 | 434 | 22 | 22 | 659 | 134 | 820 | 6.28e-55 | 201 |
| Msa0077130 | AT3G01670.2 | 25.847 | 708 | 434 | 21 | 22 | 659 | 158 | 844 | 9.10e-55 | 201 |
| Msa0077130 | AT1G67790.1 | 24.378 | 603 | 398 | 19 | 96 | 657 | 79 | 664 | 1.49e-39 | 155 |
Find 156 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTATATGATCATAAAT+TGG | 0.139133 | 1_2:+53643602 | None:intergenic |
| GGAAATTATGGAAGTGTTTA+AGG | 0.152895 | 1_2:-53643875 | Msa0077130:CDS |
| AAAACATCGCAATGAAATTT+TGG | 0.167607 | 1_2:-53644500 | Msa0077130:CDS |
| TTTCTTCTTAGTCTTCTTTA+TGG | 0.173728 | 1_2:-53642482 | Msa0077130:three_prime_UTR |
| TATGTACTTGATACCTTTAA+TGG | 0.197622 | 1_2:+53643457 | None:intergenic |
| CATTGATTCTTCTTTGGATT+TGG | 0.201689 | 1_2:+53643313 | None:intergenic |
| CATCACTTTGCACCCATTAA+AGG | 0.204242 | 1_2:-53643470 | Msa0077130:CDS |
| AATTCCCAGTTGATGTATAT+TGG | 0.204655 | 1_2:-53644360 | Msa0077130:CDS |
| ACATTGATATAAAGATTAAA+TGG | 0.204759 | 1_2:-53643253 | Msa0077130:CDS |
| TGTTTAAGGTGCTGATATTT+TGG | 0.216136 | 1_2:-53643861 | Msa0077130:CDS |
| GAAAAGTCTGTCATCATTTA+TGG | 0.229545 | 1_2:-53643107 | Msa0077130:CDS |
| CAAATGTGGTTAACAACTTT+TGG | 0.237806 | 1_2:-53642965 | Msa0077130:CDS |
| CATTGACCTTATCCATATTA+TGG | 0.238930 | 1_2:+53642574 | None:intergenic |
| TTGTGTCATTGATTCTTCTT+TGG | 0.239627 | 1_2:+53643307 | None:intergenic |
| CCATCATAGATGGGAGCTTT+TGG | 0.253276 | 1_2:+53643829 | None:intergenic |
| CTTGATTATGCCTAATGATT+TGG | 0.255438 | 1_2:+53644558 | None:intergenic |
| TCAAACCCCGACGGAAATTA+TGG | 0.258203 | 1_2:-53643887 | Msa0077130:CDS |
| AGGCAGGATTTATCTCATTT+TGG | 0.270915 | 1_2:-53644124 | Msa0077130:CDS |
| ATTCCATATGATTCAAGTTT+GGG | 0.287868 | 1_2:-53643357 | Msa0077130:CDS |
| CTACAAGTGTTGCCATAATA+TGG | 0.289104 | 1_2:-53642586 | Msa0077130:CDS |
| CAAAAGTTGTTAACCACATT+TGG | 0.289864 | 1_2:+53642966 | None:intergenic |
| TGCTCATCAGACATGGTTAA+AGG | 0.291226 | 1_2:+53647312 | None:intergenic |
| CATTCCATATGATTCAAGTT+TGG | 0.299165 | 1_2:-53643358 | Msa0077130:CDS |
| TCCAGCTCTTGCACCAGCTT+TGG | 0.314260 | 1_2:-53644386 | Msa0077130:CDS |
| ATTCCCAGTTGATGTATATT+GGG | 0.322317 | 1_2:-53644359 | Msa0077130:CDS |
| CCCTTGAGTATGGAGACTTC+TGG | 0.329114 | 1_2:-53644615 | Msa0077130:CDS |
| CTTGAGATTCCTAATGTTGC+TGG | 0.329358 | 1_2:-53642669 | Msa0077130:CDS |
| TCAAAATTGAGATGTCTTCT+TGG | 0.335715 | 1_2:+53643627 | None:intergenic |
| TCACAAATGCAACTAGAATA+AGG | 0.336343 | 1_2:-53642370 | Msa0077130:three_prime_UTR |
| CATGTCTGATGAGCACATTT+TGG | 0.345477 | 1_2:-53647304 | Msa0077130:CDS |
| CTCCCCAAACTTGAATCATA+TGG | 0.346723 | 1_2:+53643354 | None:intergenic |
| ATAACCCAATATACATCAAC+TGG | 0.359445 | 1_2:+53644355 | None:intergenic |
| ATTCAAGTTTGGGGAGTAAA+GGG | 0.363993 | 1_2:-53643347 | Msa0077130:CDS |
| TCTGGACACTCGATAAAATC+TGG | 0.364613 | 1_2:+53642639 | None:intergenic |
| AAAACCTGTCAAACTATTCA+TGG | 0.371032 | 1_2:-53644672 | Msa0077130:CDS |
| TCTTCTTTGGATTTGGAGTA+AGG | 0.371960 | 1_2:+53643320 | None:intergenic |
| GTTGAGACTCCAAGCAAAAT+AGG | 0.374745 | 1_2:+53642991 | None:intergenic |
| TCTTTATATGATCATAAATT+GGG | 0.380456 | 1_2:+53643603 | None:intergenic |
| TTTAGTGGAACCATCATAGA+TGG | 0.382422 | 1_2:+53643819 | None:intergenic |
| TCCATTGTGCGGTGACAATC+TGG | 0.382744 | 1_2:+53642621 | None:intergenic |
| ATGTACTTGATACCTTTAAT+GGG | 0.385849 | 1_2:+53643458 | None:intergenic |
| TATGATCATATAAAGAAAAC+TGG | 0.388913 | 1_2:-53643596 | Msa0077130:CDS |
| CAAAATTGAGATGTCTTCTT+GGG | 0.390337 | 1_2:+53643628 | None:intergenic |
| ACTCATGGCTACATTGCTTA+AGG | 0.392544 | 1_2:+53642420 | None:intergenic |
| AAAGATGTCGCAATCAATAA+AGG | 0.397602 | 1_2:-53642756 | Msa0077130:CDS |
| GGACTCAACACAAGAAATAA+AGG | 0.400912 | 1_2:+53643407 | None:intergenic |
| TAAGGTCAATGGCGAGCATT+AGG | 0.411115 | 1_2:-53642562 | Msa0077130:exon |
| CAGACATGGTTAAAGGGTTA+TGG | 0.416704 | 1_2:+53647319 | None:intergenic |
| CTTTCTTACAAAACTGAGAC+AGG | 0.418823 | 1_2:-53642867 | Msa0077130:CDS |
| CATCAAACTTAGTGTCACTA+TGG | 0.419012 | 1_2:+53647259 | None:intergenic |
| ATTGTGACTTCCGTTGGTCA+TGG | 0.436478 | 1_2:-53642819 | Msa0077130:CDS |
| TAAAGGTATCAAGTACATAA+AGG | 0.437070 | 1_2:-53643453 | Msa0077130:CDS |
| GAACCACTTGCCAAATCATT+AGG | 0.438307 | 1_2:-53644568 | Msa0077130:CDS |
| TGGCAAGTGGTTCTGTTGGT+TGG | 0.443588 | 1_2:+53644578 | None:intergenic |
| AACAAACACTGTTACACAAC+AGG | 0.447051 | 1_2:-53642901 | Msa0077130:CDS |
| GATTCAAGTTTGGGGAGTAA+AGG | 0.451419 | 1_2:-53643348 | Msa0077130:CDS |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1_2:+53643548 | None:intergenic |
| CAACATGGGTTGAACGTGTA+AGG | 0.459385 | 1_2:+53647205 | None:intergenic |
| GGAGCTCAACAATTTGATCA+AGG | 0.463664 | 1_2:-53644479 | Msa0077130:CDS |
| TAATAGCGGCATCATTTGCT+AGG | 0.464096 | 1_2:+53643036 | None:intergenic |
| TCCAAAGCTGGTGCAAGAGC+TGG | 0.468376 | 1_2:+53644385 | None:intergenic |
| CTTTGAAGTTAAAGATGCCT+TGG | 0.470296 | 1_2:-53643502 | Msa0077130:CDS |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1_2:-53644661 | Msa0077130:CDS |
| CCAGGGACATCAAGGAGGTC+TGG | 0.473458 | 1_2:-53647003 | Msa0077130:intron |
| CATTGAAATCATCATTGAGT+TGG | 0.474539 | 1_2:-53644443 | Msa0077130:CDS |
| TTGTATGCTATTTCCTCACC+TGG | 0.476461 | 1_2:+53644715 | None:intergenic |
| CAACCCATGAATAGTTTGAC+AGG | 0.478125 | 1_2:+53644668 | None:intergenic |
| CATTGATATAAAGATTAAAT+GGG | 0.479358 | 1_2:-53643252 | Msa0077130:intron |
| GGAAGTCACAATAGACCCTT+TGG | 0.480483 | 1_2:+53642830 | None:intergenic |
| GCGAGCATTAGGTAGCTTCA+TGG | 0.481339 | 1_2:-53642551 | Msa0077130:exon |
| GCTCATCAGACATGGTTAAA+GGG | 0.484807 | 1_2:+53647313 | None:intergenic |
| TTATATCAATGTCAGCCAGC+AGG | 0.486824 | 1_2:+53643264 | None:intergenic |
| TTGTGACTTCCGTTGGTCAT+GGG | 0.487496 | 1_2:-53642818 | Msa0077130:CDS |
| TATAATTACCAGGGACATCA+AGG | 0.488936 | 1_2:-53647011 | Msa0077130:intron |
| CCGTGGCGGAGTTTGACAAA+TGG | 0.489513 | 1_2:-53642779 | Msa0077130:CDS |
| ACAATTTGATCAAGGCAACT+TGG | 0.492049 | 1_2:-53644471 | Msa0077130:CDS |
| CATAATATGGATAAGGTCAA+TGG | 0.494269 | 1_2:-53642573 | Msa0077130:CDS |
| TCACAATGCACTATACAGAT+TGG | 0.496814 | 1_2:-53644058 | Msa0077130:intron |
| CTGGTGGATTAATGTTATCC+AGG | 0.508936 | 1_2:+53646976 | None:intergenic |
| GTGTTGCCATAATATGGATA+AGG | 0.513789 | 1_2:-53642580 | Msa0077130:CDS |
| GCTTCATGGGTATTTAGCAT+TGG | 0.514749 | 1_2:-53642537 | Msa0077130:three_prime_UTR |
| ACACTTCCATAATTTCCGTC+GGG | 0.516308 | 1_2:+53643881 | None:intergenic |
| CCAAAAGCTCCCATCTATGA+TGG | 0.519285 | 1_2:-53643829 | Msa0077130:CDS |
| ACTGGGAATTGTTCCAAAGC+TGG | 0.521352 | 1_2:+53644373 | None:intergenic |
| CTGGACACTCGATAAAATCT+GGG | 0.524375 | 1_2:+53642640 | None:intergenic |
| TCAAGGAGGTCTGGACCACC+TGG | 0.524704 | 1_2:-53646994 | Msa0077130:CDS |
| CAATGACACAAGAATTAATG+TGG | 0.525892 | 1_2:-53643295 | Msa0077130:CDS |
| ATCATTCCATTCCTCCACAA+TGG | 0.531780 | 1_2:+53643547 | None:intergenic |
| AATGTGGGTTGATTCCCTGC+TGG | 0.532892 | 1_2:-53643279 | Msa0077130:CDS |
| CAACAATTCACTAAGTATGC+TGG | 0.534554 | 1_2:-53643062 | Msa0077130:CDS |
| ATGCCTAATGATTTGGCAAG+TGG | 0.539047 | 1_2:+53644565 | None:intergenic |
| GCTTCAGGCTTTGAAAGTTG+AGG | 0.543555 | 1_2:+53644529 | None:intergenic |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.544476 | 1_2:+53644574 | None:intergenic |
| CAGATGTCATGCAAGGCACC+AGG | 0.546738 | 1_2:-53644733 | Msa0077130:CDS |
| ATGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1_2:-53643088 | Msa0077130:CDS |
| AGCGGTGAAGTGAAGCTAGC+TGG | 0.549501 | 1_2:+53646957 | None:intergenic |
| CATTTATGGAGGTAAAGATA+AGG | 0.555548 | 1_2:-53643093 | Msa0077130:CDS |
| AACACTTCCATAATTTCCGT+CGG | 0.557817 | 1_2:+53643880 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1_2:-53644090 | Msa0077130:CDS |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1_2:-53643553 | Msa0077130:CDS |
| CTTCTTTGGATTTGGAGTAA+GGG | 0.567493 | 1_2:+53643321 | None:intergenic |
| TATATCAATGTCAGCCAGCA+GGG | 0.567784 | 1_2:+53643265 | None:intergenic |
| CAGAATATAACAAGTTACTC+AGG | 0.569457 | 1_2:-53643918 | Msa0077130:CDS |
| GGGTCTATTGTGACTTCCGT+TGG | 0.572144 | 1_2:-53642825 | Msa0077130:CDS |
| CCATTTGTCAAACTCCGCCA+CGG | 0.572946 | 1_2:+53642779 | None:intergenic |
| TGATGGTTCCACTAAAACAC+TGG | 0.573095 | 1_2:-53643812 | Msa0077130:intron |
| AAACCTGTCAAACTATTCAT+GGG | 0.575469 | 1_2:-53644671 | Msa0077130:CDS |
| AATAGCGGCATCATTTGCTA+GGG | 0.575747 | 1_2:+53643037 | None:intergenic |
| CAAAATGTGCTCATCAGACA+TGG | 0.576873 | 1_2:+53647305 | None:intergenic |
| CAACGGTAATGCAAGACTCA+TGG | 0.577072 | 1_2:+53642405 | None:intergenic |
| TGTGAATAAGTGATCGCACT+AGG | 0.578637 | 1_2:+53647364 | None:intergenic |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1_2:+53643570 | None:intergenic |
| CTGAGTAACAATCGCAACAA+TGG | 0.581293 | 1_2:+53644327 | None:intergenic |
| CAGCAACATTAGGAATCTCA+AGG | 0.582036 | 1_2:+53642670 | None:intergenic |
| TGATGTAGAATCTTTCCTTG+TGG | 0.585970 | 1_2:+53643386 | None:intergenic |
| TTAGTGGAACCATCATAGAT+GGG | 0.587810 | 1_2:+53643820 | None:intergenic |
| TTTCTTGTGTTGAGTCCACA+AGG | 0.590992 | 1_2:-53643401 | Msa0077130:CDS |
| GGGTGGGCAATTGTAACCAA+AGG | 0.592436 | 1_2:-53642846 | Msa0077130:CDS |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1_2:-53643561 | Msa0077130:CDS |
| CGAGCATTAGGTAGCTTCAT+GGG | 0.595092 | 1_2:-53642550 | Msa0077130:exon |
| GAAGCCAACACAAGATTGTG+TGG | 0.598027 | 1_2:-53643574 | Msa0077130:CDS |
| GTCATGCAAGGCACCAGGTG+AGG | 0.600067 | 1_2:-53644728 | Msa0077130:CDS |
| AACTGTAGTCCCATGACCAA+CGG | 0.603887 | 1_2:+53642809 | None:intergenic |
| GTGCGATCACTTATTCACAT+TGG | 0.606075 | 1_2:-53647360 | Msa0077130:CDS |
| GGTGGGCAATTGTAACCAAA+GGG | 0.607043 | 1_2:-53642845 | Msa0077130:CDS |
| ACCAGAAGTCTCCATACTCA+AGG | 0.607323 | 1_2:+53644614 | None:intergenic |
| CAACTCGCGTCATGACATCA+AGG | 0.608552 | 1_2:-53644413 | Msa0077130:CDS |
| GCAGAACGTTATCAACAACA+TGG | 0.612191 | 1_2:+53647190 | None:intergenic |
| TTCCATATGATTCAAGTTTG+GGG | 0.613604 | 1_2:-53643356 | Msa0077130:CDS |
| TGTGATCTCACTGTGATCAA+CGG | 0.622745 | 1_2:+53642388 | None:intergenic |
| CACTTCCATAATTTCCGTCG+GGG | 0.623012 | 1_2:+53643882 | None:intergenic |
| AATGACACAAGAATTAATGT+GGG | 0.631951 | 1_2:-53643294 | Msa0077130:CDS |
| TTTGAAGCAAATTAACTCTG+AGG | 0.632146 | 1_2:-53646928 | Msa0077130:intron |
| TTACAAAACTGAGACAGGGT+GGG | 0.637237 | 1_2:-53642862 | Msa0077130:CDS |
| TCCAGATTGTCACCGCACAA+TGG | 0.640478 | 1_2:-53642622 | Msa0077130:CDS |
| CAGAACGTTATCAACAACAT+GGG | 0.651391 | 1_2:+53647191 | None:intergenic |
| GGAGTCTCAACAGCCAAATG+TGG | 0.652213 | 1_2:-53642979 | Msa0077130:CDS |
| CCAGAAGTCTCCATACTCAA+GGG | 0.652849 | 1_2:+53644615 | None:intergenic |
| AGGTATCAAGTACATAAAGG+AGG | 0.656067 | 1_2:-53643450 | Msa0077130:CDS |
| AAGTCTGTCATCATTTATGG+AGG | 0.656284 | 1_2:-53643104 | Msa0077130:CDS |
| GTGGATTAATGTTATCCAGG+TGG | 0.656925 | 1_2:+53646979 | None:intergenic |
| AGTCTTCGTCTGCTTAATAG+CGG | 0.660331 | 1_2:+53643022 | None:intergenic |
| TTTCTTACAAAACTGAGACA+GGG | 0.660582 | 1_2:-53642866 | Msa0077130:CDS |
| ATGATGGCAGATGTCATGCA+AGG | 0.662170 | 1_2:-53644740 | Msa0077130:intron |
| ATTTAGAGAACATCATCACA+AGG | 0.662401 | 1_2:-53642721 | Msa0077130:CDS |
| AAGTGATGCAAAACATACCA+AGG | 0.663117 | 1_2:+53643485 | None:intergenic |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1_2:+53644356 | None:intergenic |
| CTTACAAAACTGAGACAGGG+TGG | 0.667191 | 1_2:-53642863 | Msa0077130:CDS |
| AAGCCAACACAAGATTGTGT+GGG | 0.670390 | 1_2:-53643573 | Msa0077130:CDS |
| TAATGAACACTTCCATTGTG+CGG | 0.679237 | 1_2:+53642610 | None:intergenic |
| AAGGTGAGAGCAAATATGAA+CGG | 0.680495 | 1_2:+53642689 | None:intergenic |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1_2:-53643558 | Msa0077130:CDS |
| GAAGCTCTTTCAAACCCCGA+CGG | 0.688404 | 1_2:-53643896 | Msa0077130:CDS |
| GGTGAAGTGAAGCTAGCTGG+TGG | 0.705282 | 1_2:+53646960 | None:intergenic |
| AATTACCAGGGACATCAAGG+AGG | 0.737889 | 1_2:-53647008 | Msa0077130:intron |
| ATTTGCTTCAAAGTACACAG+CGG | 0.765745 | 1_2:+53646939 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAAATTTTATTTTAAA+TGG | + | chr1_2:53643678-53643697 | None:intergenic | 0.0% |
| !! | AAAAATATATTATTAGAAGT+TGG | + | chr1_2:53642604-53642623 | None:intergenic | 10.0% |
| !!! | ACTTCTAATAATATATTTTT+CGG | - | chr1_2:53642604-53642623 | Msa0077130:CDS | 10.0% |
| !!! | TTGTTTCTTATTTTAATTAT+GGG | + | chr1_2:53642996-53643015 | None:intergenic | 10.0% |
| !!! | TTTGTTTCTTATTTTAATTA+TGG | + | chr1_2:53642997-53643016 | None:intergenic | 10.0% |
| !! | TCTAAAAAAAATCATTAAAT+GGG | + | chr1_2:53643049-53643068 | None:intergenic | 10.0% |
| !!! | TTTTTTAATTCAAAATCTTA+AGG | - | chr1_2:53643860-53643879 | Msa0077130:CDS | 10.0% |
| !! | AAAGTTATTAAAATTAAGTA+AGG | - | chr1_2:53644529-53644548 | Msa0077130:CDS | 10.0% |
| !!! | ATATGTTTTTATAATTAATC+AGG | - | chr1_2:53645976-53645995 | Msa0077130:intron | 10.0% |
| !! | AGTTATTTGTATTTAATTAG+AGG | + | chr1_2:53642652-53642671 | None:intergenic | 15.0% |
| !!! | CTCTAAAAAAAATCATTAAA+TGG | + | chr1_2:53643050-53643069 | None:intergenic | 15.0% |
| !!! | CATTTAATGATTTTTTTTAG+AGG | - | chr1_2:53643048-53643067 | Msa0077130:CDS | 15.0% |
| !!! | TCACTAAAAAAGTTTTAAAT+AGG | - | chr1_2:53643137-53643156 | Msa0077130:intron | 15.0% |
| !!! | TAATGCATTTTATTATGAAA+TGG | + | chr1_2:53643366-53643385 | None:intergenic | 15.0% |
| !! | CAAAAAATGTTATATTCAAA+TGG | + | chr1_2:53643574-53643593 | None:intergenic | 15.0% |
| !!! | TATTTTACTAAAATTGACAA+GGG | + | chr1_2:53644002-53644021 | None:intergenic | 15.0% |
| !!! | TTATTTTACTAAAATTGACA+AGG | + | chr1_2:53644003-53644022 | None:intergenic | 15.0% |
| !! | AAAAAAAATTGGTATAAAAG+AGG | - | chr1_2:53644021-53644040 | Msa0077130:intron | 15.0% |
| !! | AAAAAAATTGGTATAAAAGA+GGG | - | chr1_2:53644022-53644041 | Msa0077130:intron | 15.0% |
| !!! | TTTAGAGTTAAATATGTTTT+TGG | - | chr1_2:53644069-53644088 | Msa0077130:CDS | 15.0% |
| !! | AATGCTAATAAAATTAAGTA+AGG | + | chr1_2:53644127-53644146 | None:intergenic | 15.0% |
| !!! | AAACAAATTTAGTTTTTACA+AGG | + | chr1_2:53644189-53644208 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAATTCA+AGG | + | chr1_2:53644218-53644237 | None:intergenic | 15.0% |
| !!! | TAAATTTTTGAACGATATTT+TGG | - | chr1_2:53644226-53644245 | Msa0077130:intron | 15.0% |
| !! | TAAGCATAATTAAACAAATT+TGG | - | chr1_2:53644457-53644476 | Msa0077130:CDS | 15.0% |
| !!! | TTTTTTATCCCTATAAAATT+AGG | + | chr1_2:53644571-53644590 | None:intergenic | 15.0% |
| !! | TATAATAATGAAAATGGAAA+AGG | - | chr1_2:53644610-53644629 | Msa0077130:CDS | 15.0% |
| !!! | CCAATTTTTTTTTTAAAAGA+TGG | + | chr1_2:53644669-53644688 | None:intergenic | 15.0% |
| !!! | CCATCTTTTAAAAAAAAAAT+TGG | - | chr1_2:53644666-53644685 | Msa0077130:CDS | 15.0% |
| !! | TTAAAAAAAAAATTGGAGAA+AGG | - | chr1_2:53644673-53644692 | Msa0077130:CDS | 15.0% |
| !!! | TATGAACTTTTAAAAAATGT+TGG | + | chr1_2:53644769-53644788 | None:intergenic | 15.0% |
| !! | ATATTAATCAAATTCATGAA+AGG | - | chr1_2:53644786-53644805 | Msa0077130:intron | 15.0% |
| !! | TTTACTATAAAGTTTACATA+AGG | + | chr1_2:53644900-53644919 | None:intergenic | 15.0% |
| !! | TCTTTATATGATCATAAATT+GGG | + | chr1_2:53646087-53646106 | None:intergenic | 15.0% |
| !! | TTCTTTATATGATCATAAAT+TGG | + | chr1_2:53646088-53646107 | None:intergenic | 15.0% |
| !! | ACATTGATATAAAGATTAAA+TGG | - | chr1_2:53646434-53646453 | Msa0077130:intron | 15.0% |
| !! | CATTGATATAAAGATTAAAT+GGG | - | chr1_2:53646435-53646454 | Msa0077130:intron | 15.0% |
| !!! | ATAACTTGTTTATAATTACC+AGG | - | chr1_2:53642666-53642685 | Msa0077130:CDS | 20.0% |
| !!! | TAACTTGTTTATAATTACCA+GGG | - | chr1_2:53642667-53642686 | Msa0077130:CDS | 20.0% |
| !!! | TTTTCGTATGATAAGTAAAT+AGG | - | chr1_2:53642800-53642819 | Msa0077130:CDS | 20.0% |
| !! | TTTCGTATGATAAGTAAATA+GGG | - | chr1_2:53642801-53642820 | Msa0077130:CDS | 20.0% |
| !! | CATTAAAAAAGTTTCTTAAC+AGG | - | chr1_2:53643109-53643128 | Msa0077130:CDS | 20.0% |
| !!! | AAAAAGTTTTAAATAGGTGA+TGG | - | chr1_2:53643143-53643162 | Msa0077130:intron | 20.0% |
| !!! | AAAAGTTTTAAATAGGTGAT+GGG | - | chr1_2:53643144-53643163 | Msa0077130:intron | 20.0% |
| !! | AAAATGTCAAAACTATTCAT+GGG | + | chr1_2:53643173-53643192 | None:intergenic | 20.0% |
| !! | AAAAATGTCAAAACTATTCA+TGG | + | chr1_2:53643174-53643193 | None:intergenic | 20.0% |
| !!! | AGTTTAAGTTAAAGAGTTAA+AGG | + | chr1_2:53643463-53643482 | None:intergenic | 20.0% |
| !! | ATGTTATATTCAAATGGATA+AGG | + | chr1_2:53643568-53643587 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTATCGAAAGATT+TGG | - | chr1_2:53643589-53643608 | Msa0077130:CDS | 20.0% |
| !!! | AAAATTCAAGTTAGGTTTTT+AGG | + | chr1_2:53643886-53643905 | None:intergenic | 20.0% |
| !!! | TAAAGCAAAAAATTCAAGTT+AGG | + | chr1_2:53643894-53643913 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTTATTCTTTTAG+AGG | - | chr1_2:53643903-53643922 | Msa0077130:CDS | 20.0% |
| !!! | CATGTAATTTTCTTTTTGTA+GGG | + | chr1_2:53644156-53644175 | None:intergenic | 20.0% |
| !!! | ACATGTAATTTTCTTTTTGT+AGG | + | chr1_2:53644157-53644176 | None:intergenic | 20.0% |
| !! | TGAAAAGAGTAACAAAAATA+TGG | - | chr1_2:53644350-53644369 | Msa0077130:CDS | 20.0% |
| !! | TAAACAAATTTGGATTAAGA+AGG | - | chr1_2:53644467-53644486 | Msa0077130:CDS | 20.0% |
| !!! | AAATGCAGAATGTTTTTATA+CGG | - | chr1_2:53644500-53644519 | Msa0077130:CDS | 20.0% |
| !!! | AAGTAAGGACTAAATTTTAA+AGG | - | chr1_2:53644544-53644563 | Msa0077130:CDS | 20.0% |
| !!! | TTTAAAGGTCCTAATTTTAT+AGG | - | chr1_2:53644559-53644578 | Msa0077130:CDS | 20.0% |
| !!! | TTAAAGGTCCTAATTTTATA+GGG | - | chr1_2:53644560-53644579 | Msa0077130:CDS | 20.0% |
| !!! | GTTTACATAAGGATATTTTT+TGG | + | chr1_2:53644889-53644908 | None:intergenic | 20.0% |
| !! | ACTTGATTATAAACAAAACA+AGG | + | chr1_2:53645465-53645484 | None:intergenic | 20.0% |
| !!! | AGTTACAATTTTTTTTTTCC+AGG | - | chr1_2:53645534-53645553 | Msa0077130:intron | 20.0% |
| !!! | GTTACAATTTTTTTTTTCCA+GGG | - | chr1_2:53645535-53645554 | Msa0077130:intron | 20.0% |
| !! | TTTATGTTTAAGTATGTACA+AGG | - | chr1_2:53645938-53645957 | Msa0077130:intron | 20.0% |
| !! | TATGATCATATAAAGAAAAC+TGG | - | chr1_2:53646091-53646110 | Msa0077130:intron | 20.0% |
| ! | TTCGTATGATAAGTAAATAG+GGG | - | chr1_2:53642802-53642821 | Msa0077130:CDS | 25.0% |
| ! | AAGACTAAAAACATATCCAA+TGG | - | chr1_2:53642896-53642915 | Msa0077130:CDS | 25.0% |
| ! | AAAAGTAAATGACTTTCCAT+TGG | + | chr1_2:53642915-53642934 | None:intergenic | 25.0% |
| !!! | TTTTTTTAGAGGTGAAGAAT+TGG | - | chr1_2:53643059-53643078 | Msa0077130:CDS | 25.0% |
| !!! | TTTTTCGTTGATTCAATTGT+GGG | + | chr1_2:53643545-53643564 | None:intergenic | 25.0% |
| !!! | TTTTTGGTCCCTATAAAATT+GGG | - | chr1_2:53644085-53644104 | Msa0077130:CDS | 25.0% |
| !! | TAGAAGTTCCCAATTTTATA+GGG | + | chr1_2:53644096-53644115 | None:intergenic | 25.0% |
| !! | TTAGAAGTTCCCAATTTTAT+AGG | + | chr1_2:53644097-53644116 | None:intergenic | 25.0% |
| !! | GAAATCAAATATTTTGCAGA+GGG | - | chr1_2:53644378-53644397 | Msa0077130:CDS | 25.0% |
| !! | AAAACATCGCAATGAAATTT+TGG | - | chr1_2:53645187-53645206 | Msa0077130:intron | 25.0% |
| ! | TAATTACAGCTTTACACATT+TGG | - | chr1_2:53645652-53645671 | Msa0077130:intron | 25.0% |
| !! | GAAGAAAATACTTCCATTTT+GGG | + | chr1_2:53645712-53645731 | None:intergenic | 25.0% |
| ! | CAAATAATCTCCATCAATAT+GGG | + | chr1_2:53645734-53645753 | None:intergenic | 25.0% |
| ! | TCAAATAATCTCCATCAATA+TGG | + | chr1_2:53645735-53645754 | None:intergenic | 25.0% |
| ! | ATGTACTTGATACCTTTAAT+GGG | + | chr1_2:53646232-53646251 | None:intergenic | 25.0% |
| ! | TATGTACTTGATACCTTTAA+TGG | + | chr1_2:53646233-53646252 | None:intergenic | 25.0% |
| !!! | TAAAGGTATCAAGTACATAA+AGG | - | chr1_2:53646234-53646253 | Msa0077130:intron | 25.0% |
| !! | ATTCCATATGATTCAAGTTT+GGG | - | chr1_2:53646330-53646349 | Msa0077130:intron | 25.0% |
| ! | AATGACACAAGAATTAATGT+GGG | - | chr1_2:53646393-53646412 | Msa0077130:intron | 25.0% |
| ! | TTGTAATTTCATGTGAACTT+TGG | - | chr1_2:53646542-53646561 | Msa0077130:intron | 25.0% |
| !! | TTTCTTCTTAGTCTTCTTTA+TGG | - | chr1_2:53647205-53647224 | Msa0077130:CDS | 25.0% |
| ! | AATCTCTTTTCAACATTGCT+GGG | - | chr1_2:53642454-53642473 | Msa0077130:three_prime_UTR | 30.0% |
| ! | TTTGAAGCAAATTAACTCTG+AGG | - | chr1_2:53642759-53642778 | Msa0077130:CDS | 30.0% |
| GGAGTCATTGAATATTTAAC+AGG | - | chr1_2:53643080-53643099 | Msa0077130:CDS | 30.0% | |
| ! | TAGATAAGAGACTTTTGATG+TGG | + | chr1_2:53643227-53643246 | None:intergenic | 30.0% |
| ATGGACAAAACACTTAGAAA+TGG | + | chr1_2:53643347-53643366 | None:intergenic | 30.0% | |
| AAGCAATATCAAAGGAAGAA+AGG | + | chr1_2:53643493-53643512 | None:intergenic | 30.0% | |
| ! | AGTGTTTGAAGCAATATCAA+AGG | + | chr1_2:53643501-53643520 | None:intergenic | 30.0% |
| !!! | GTTTTTCGTTGATTCAATTG+TGG | + | chr1_2:53643546-53643565 | None:intergenic | 30.0% |
| ! | CAGCTCTAATAGTTATTTAG+AGG | - | chr1_2:53643628-53643647 | Msa0077130:CDS | 30.0% |
| !! | ATCAAGTTTTGACGAGTTTA+AGG | - | chr1_2:53643723-53643742 | Msa0077130:intron | 30.0% |
| AGCTTAATTGGTCAAAAAGA+GGG | + | chr1_2:53643760-53643779 | None:intergenic | 30.0% | |
| TAGCTTAATTGGTCAAAAAG+AGG | + | chr1_2:53643761-53643780 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGTCCCTATAAAAT+TGG | - | chr1_2:53644084-53644103 | Msa0077130:CDS | 30.0% |
| ! | CGAAATCAAATATTTTGCAG+AGG | - | chr1_2:53644377-53644396 | Msa0077130:CDS | 30.0% |
| ! | TTTTTGACAAGTGAGAAGAA+AGG | - | chr1_2:53644713-53644732 | Msa0077130:CDS | 30.0% |
| ACATTTATATTGCACGATGA+TGG | - | chr1_2:53644931-53644950 | Msa0077130:intron | 30.0% | |
| ! | AATAGTTTGACAGGTTTTTC+AGG | + | chr1_2:53645013-53645032 | None:intergenic | 30.0% |
| AAAACCTGTCAAACTATTCA+TGG | - | chr1_2:53645015-53645034 | Msa0077130:intron | 30.0% | |
| AAACCTGTCAAACTATTCAT+GGG | - | chr1_2:53645016-53645035 | Msa0077130:intron | 30.0% | |
| CTTGATTATGCCTAATGATT+TGG | + | chr1_2:53645132-53645151 | None:intergenic | 30.0% | |
| CATTGAAATCATCATTGAGT+TGG | - | chr1_2:53645244-53645263 | Msa0077130:intron | 30.0% | |
| ! | AATTCCCAGTTGATGTATAT+TGG | - | chr1_2:53645327-53645346 | Msa0077130:intron | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | - | chr1_2:53645328-53645347 | Msa0077130:intron | 30.0% |
| TAACCCAATATACATCAACT+GGG | + | chr1_2:53645334-53645353 | None:intergenic | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | + | chr1_2:53645335-53645354 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTCCAGGGATAAG+AGG | - | chr1_2:53645543-53645562 | Msa0077130:intron | 30.0% |
| ACATCATAATCAGCAAATTG+AGG | - | chr1_2:53645597-53645616 | Msa0077130:intron | 30.0% | |
| !!! | TTTGTTTTGTCAACCCAAAA+TGG | - | chr1_2:53645696-53645715 | Msa0077130:intron | 30.0% |
| ! | GGAAGAAAATACTTCCATTT+TGG | + | chr1_2:53645713-53645732 | None:intergenic | 30.0% |
| ! | GTATTTTCTTCCCATATTGA+TGG | - | chr1_2:53645721-53645740 | Msa0077130:intron | 30.0% |
| CAGAATATAACAAGTTACTC+AGG | - | chr1_2:53645769-53645788 | Msa0077130:intron | 30.0% | |
| !! | GGAAATTATGGAAGTGTTTA+AGG | - | chr1_2:53645812-53645831 | Msa0077130:intron | 30.0% |
| !!! | TGTTTAAGGTGCTGATATTT+TGG | - | chr1_2:53645826-53645845 | Msa0077130:intron | 30.0% |
| TGTTTAAGTATGTACAAGGT+TGG | - | chr1_2:53645942-53645961 | Msa0077130:intron | 30.0% | |
| !! | TATCGAAGTGTTGAAAAAGA+AGG | - | chr1_2:53646003-53646022 | Msa0077130:intron | 30.0% |
| CAAAATTGAGATGTCTTCTT+GGG | + | chr1_2:53646062-53646081 | None:intergenic | 30.0% | |
| TCAAAATTGAGATGTCTTCT+TGG | + | chr1_2:53646063-53646082 | None:intergenic | 30.0% | |
| ! | CATTCCATATGATTCAAGTT+TGG | - | chr1_2:53646329-53646348 | Msa0077130:intron | 30.0% |
| ! | TTCCATATGATTCAAGTTTG+GGG | - | chr1_2:53646331-53646350 | Msa0077130:intron | 30.0% |
| !! | CATTGATTCTTCTTTGGATT+TGG | + | chr1_2:53646377-53646396 | None:intergenic | 30.0% |
| !! | TTGTGTCATTGATTCTTCTT+TGG | + | chr1_2:53646383-53646402 | None:intergenic | 30.0% |
| CAATGACACAAGAATTAATG+TGG | - | chr1_2:53646392-53646411 | Msa0077130:intron | 30.0% | |
| AGATTAAATGGGTACGTATT+CGG | - | chr1_2:53646446-53646465 | Msa0077130:intron | 30.0% | |
| ! | TGAACTTTGGAAATTGAAGA+AGG | - | chr1_2:53646555-53646574 | Msa0077130:intron | 30.0% |
| GAAAAGTCTGTCATCATTTA+TGG | - | chr1_2:53646580-53646599 | Msa0077130:intron | 30.0% | |
| CATTTATGGAGGTAAAGATA+AGG | - | chr1_2:53646594-53646613 | Msa0077130:intron | 30.0% | |
| ! | TTCAATTGACCTATTTTGCT+TGG | - | chr1_2:53646687-53646706 | Msa0077130:intron | 30.0% |
| CAAAAGTTGTTAACCACATT+TGG | + | chr1_2:53646724-53646743 | None:intergenic | 30.0% | |
| ! | CAAATGTGGTTAACAACTTT+TGG | - | chr1_2:53646722-53646741 | Msa0077130:intron | 30.0% |
| !! | GGTTAACAACTTTTGGAAAA+AGG | - | chr1_2:53646729-53646748 | Msa0077130:intron | 30.0% |
| TTTCTTACAAAACTGAGACA+GGG | - | chr1_2:53646821-53646840 | Msa0077130:intron | 30.0% | |
| AAAGATGTCGCAATCAATAA+AGG | - | chr1_2:53646931-53646950 | Msa0077130:CDS | 30.0% | |
| ATTTAGAGAACATCATCACA+AGG | - | chr1_2:53646966-53646985 | Msa0077130:CDS | 30.0% | |
| CATTGACCTTATCCATATTA+TGG | + | chr1_2:53647116-53647135 | None:intergenic | 30.0% | |
| CATAATATGGATAAGGTCAA+TGG | - | chr1_2:53647114-53647133 | Msa0077130:intron | 30.0% | |
| TCACAAATGCAACTAGAATA+AGG | - | chr1_2:53647317-53647336 | Msa0077130:CDS | 30.0% | |
| ! | CATCAAACTTAGTGTCACTA+TGG | + | chr1_2:53642431-53642450 | None:intergenic | 35.0% |
| ! | GAATCTCTTTTCAACATTGC+TGG | - | chr1_2:53642453-53642472 | Msa0077130:three_prime_UTR | 35.0% |
| CAGAACGTTATCAACAACAT+GGG | + | chr1_2:53642499-53642518 | None:intergenic | 35.0% | |
| TATAATTACCAGGGACATCA+AGG | - | chr1_2:53642676-53642695 | Msa0077130:CDS | 35.0% | |
| ATTTGCTTCAAAGTACACAG+CGG | + | chr1_2:53642751-53642770 | None:intergenic | 35.0% | |
| TTGTGGGCTTATTTGAGAAA+AGG | + | chr1_2:53643529-53643548 | None:intergenic | 35.0% | |
| TTAGAGCTGTAGCAAAGAAT+TGG | + | chr1_2:53643617-53643636 | None:intergenic | 35.0% | |
| TATAAAAGAGGGCAAAAGCT+CGG | - | chr1_2:53644033-53644052 | Msa0077130:intron | 35.0% | |
| TTCAGCGTAGATCTTTCTTA+AGG | - | chr1_2:53644817-53644836 | Msa0077130:intron | 35.0% | |
| TCAGCGTAGATCTTTCTTAA+GGG | - | chr1_2:53644818-53644837 | Msa0077130:intron | 35.0% | |
| ! | AACTATTCATGGGTTGCAAA+AGG | - | chr1_2:53645026-53645045 | Msa0077130:intron | 35.0% |
| ACAATTTGATCAAGGCAACT+TGG | - | chr1_2:53645216-53645235 | Msa0077130:intron | 35.0% | |
| ! | AGGCAGGATTTATCTCATTT+TGG | - | chr1_2:53645563-53645582 | Msa0077130:intron | 35.0% |
| TCACAATGCACTATACAGAT+TGG | - | chr1_2:53645629-53645648 | Msa0077130:intron | 35.0% | |
| AACACTTCCATAATTTCCGT+CGG | + | chr1_2:53645810-53645829 | None:intergenic | 35.0% | |
| TTAGTGGAACCATCATAGAT+GGG | + | chr1_2:53645870-53645889 | None:intergenic | 35.0% | |
| TTTAGTGGAACCATCATAGA+TGG | + | chr1_2:53645871-53645890 | None:intergenic | 35.0% | |
| !! | ACTACTAACCAGTGTTTTAG+TGG | + | chr1_2:53645886-53645905 | None:intergenic | 35.0% |
| !! | CTTTGAAGTTAAAGATGCCT+TGG | - | chr1_2:53646185-53646204 | Msa0077130:intron | 35.0% |
| AAGTGATGCAAAACATACCA+AGG | + | chr1_2:53646205-53646224 | None:intergenic | 35.0% | |
| AGGTATCAAGTACATAAAGG+AGG | - | chr1_2:53646237-53646256 | Msa0077130:intron | 35.0% | |
| GGACTCAACACAAGAAATAA+AGG | + | chr1_2:53646283-53646302 | None:intergenic | 35.0% | |
| TGATGTAGAATCTTTCCTTG+TGG | + | chr1_2:53646304-53646323 | None:intergenic | 35.0% | |
| ! | ATTCAAGTTTGGGGAGTAAA+GGG | - | chr1_2:53646340-53646359 | Msa0077130:intron | 35.0% |
| ! | CTTCTTTGGATTTGGAGTAA+GGG | + | chr1_2:53646369-53646388 | None:intergenic | 35.0% |
| ! | TCTTCTTTGGATTTGGAGTA+AGG | + | chr1_2:53646370-53646389 | None:intergenic | 35.0% |
| ! | ACTTTGGAAATTGAAGAAGG+AGG | - | chr1_2:53646558-53646577 | Msa0077130:intron | 35.0% |
| AAGTCTGTCATCATTTATGG+AGG | - | chr1_2:53646583-53646602 | Msa0077130:intron | 35.0% | |
| ATGGAGGTAAAGATAAGGAA+TGG | - | chr1_2:53646599-53646618 | Msa0077130:intron | 35.0% | |
| CAACAATTCACTAAGTATGC+TGG | - | chr1_2:53646625-53646644 | Msa0077130:intron | 35.0% | |
| !! | GTTTGTTTTCTCATGCATCT+TGG | + | chr1_2:53646773-53646792 | None:intergenic | 35.0% |
| AACAAACACTGTTACACAAC+AGG | - | chr1_2:53646786-53646805 | Msa0077130:intron | 35.0% | |
| CTTTCTTACAAAACTGAGAC+AGG | - | chr1_2:53646820-53646839 | Msa0077130:intron | 35.0% | |
| AAGGTGAGAGCAAATATGAA+CGG | + | chr1_2:53647001-53647020 | None:intergenic | 35.0% | |
| TAATGAACACTTCCATTGTG+CGG | + | chr1_2:53647080-53647099 | None:intergenic | 35.0% | |
| ! | CTACAAGTGTTGCCATAATA+TGG | - | chr1_2:53647101-53647120 | Msa0077130:intron | 35.0% |
| GTGTTGCCATAATATGGATA+AGG | - | chr1_2:53647107-53647126 | Msa0077130:intron | 35.0% | |
| TGTGAATAAGTGATCGCACT+AGG | + | chr1_2:53642326-53642345 | None:intergenic | 40.0% | |
| GTGCGATCACTTATTCACAT+TGG | - | chr1_2:53642327-53642346 | Msa0077130:three_prime_UTR | 40.0% | |
| CAGACATGGTTAAAGGGTTA+TGG | + | chr1_2:53642371-53642390 | None:intergenic | 40.0% | |
| GCTCATCAGACATGGTTAAA+GGG | + | chr1_2:53642377-53642396 | None:intergenic | 40.0% | |
| TGCTCATCAGACATGGTTAA+AGG | + | chr1_2:53642378-53642397 | None:intergenic | 40.0% | |
| CAAAATGTGCTCATCAGACA+TGG | + | chr1_2:53642385-53642404 | None:intergenic | 40.0% | |
| ! | CATGTCTGATGAGCACATTT+TGG | - | chr1_2:53642383-53642402 | Msa0077130:three_prime_UTR | 40.0% |
| GCAGAACGTTATCAACAACA+TGG | + | chr1_2:53642500-53642519 | None:intergenic | 40.0% | |
| ! | GTGGATTAATGTTATCCAGG+TGG | + | chr1_2:53642711-53642730 | None:intergenic | 40.0% |
| !! | CTGGTGGATTAATGTTATCC+AGG | + | chr1_2:53642714-53642733 | None:intergenic | 40.0% |
| TCTCCCTCTCTAATAACAAC+TGG | - | chr1_2:53642969-53642988 | Msa0077130:CDS | 40.0% | |
| ! | GGTCCAGTTGTTATTAGAGA+GGG | + | chr1_2:53642975-53642994 | None:intergenic | 40.0% |
| ! | AGATGTGCAGCTAGCTTAAT+TGG | + | chr1_2:53643772-53643791 | None:intergenic | 40.0% |
| TAACCTGAGTTTGTCTAACG+TGG | - | chr1_2:53643947-53643966 | Msa0077130:intron | 40.0% | |
| !! | TTGTATGCTATTTCCTCACC+TGG | + | chr1_2:53644975-53644994 | None:intergenic | 40.0% |
| CAACCCATGAATAGTTTGAC+AGG | + | chr1_2:53645022-53645041 | None:intergenic | 40.0% | |
| GAACCACTTGCCAAATCATT+AGG | - | chr1_2:53645119-53645138 | Msa0077130:intron | 40.0% | |
| ! | ATGCCTAATGATTTGGCAAG+TGG | + | chr1_2:53645125-53645144 | None:intergenic | 40.0% |
| !!! | CGATGTTTTTTCAGTGCTTC+AGG | + | chr1_2:53645176-53645195 | None:intergenic | 40.0% |
| GGAGCTCAACAATTTGATCA+AGG | - | chr1_2:53645208-53645227 | Msa0077130:intron | 40.0% | |
| CTGAGTAACAATCGCAACAA+TGG | + | chr1_2:53645363-53645382 | None:intergenic | 40.0% | |
| !! | AGCACTGATGTGATACATCA+TGG | - | chr1_2:53645424-53645443 | Msa0077130:intron | 40.0% |
| ACACTTCCATAATTTCCGTC+GGG | + | chr1_2:53645809-53645828 | None:intergenic | 40.0% | |
| TGATGGTTCCACTAAAACAC+TGG | - | chr1_2:53645875-53645894 | Msa0077130:intron | 40.0% | |
| AAGCCAACACAAGATTGTGT+GGG | - | chr1_2:53646114-53646133 | Msa0077130:intron | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | + | chr1_2:53646142-53646161 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | + | chr1_2:53646143-53646162 | None:intergenic | 40.0% | |
| CATCACTTTGCACCCATTAA+AGG | - | chr1_2:53646217-53646236 | Msa0077130:intron | 40.0% | |
| TTTCTTGTGTTGAGTCCACA+AGG | - | chr1_2:53646286-53646305 | Msa0077130:intron | 40.0% | |
| CTCCCCAAACTTGAATCATA+TGG | + | chr1_2:53646336-53646355 | None:intergenic | 40.0% | |
| ! | GATTCAAGTTTGGGGAGTAA+AGG | - | chr1_2:53646339-53646358 | Msa0077130:intron | 40.0% |
| TATATCAATGTCAGCCAGCA+GGG | + | chr1_2:53646425-53646444 | None:intergenic | 40.0% | |
| TTATATCAATGTCAGCCAGC+AGG | + | chr1_2:53646426-53646445 | None:intergenic | 40.0% | |
| ! | AATAGCGGCATCATTTGCTA+GGG | + | chr1_2:53646653-53646672 | None:intergenic | 40.0% |
| TAATAGCGGCATCATTTGCT+AGG | + | chr1_2:53646654-53646673 | None:intergenic | 40.0% | |
| AGTCTTCGTCTGCTTAATAG+CGG | + | chr1_2:53646668-53646687 | None:intergenic | 40.0% | |
| GTTGAGACTCCAAGCAAAAT+AGG | + | chr1_2:53646699-53646718 | None:intergenic | 40.0% | |
| TTACAAAACTGAGACAGGGT+GGG | - | chr1_2:53646825-53646844 | Msa0077130:intron | 40.0% | |
| CAGCAACATTAGGAATCTCA+AGG | + | chr1_2:53647020-53647039 | None:intergenic | 40.0% | |
| CTTGAGATTCCTAATGTTGC+TGG | - | chr1_2:53647018-53647037 | Msa0077130:intron | 40.0% | |
| ! | GGGATTTTTCCAGCAACATT+AGG | + | chr1_2:53647030-53647049 | None:intergenic | 40.0% |
| CTGGACACTCGATAAAATCT+GGG | + | chr1_2:53647050-53647069 | None:intergenic | 40.0% | |
| TCTGGACACTCGATAAAATC+TGG | + | chr1_2:53647051-53647070 | None:intergenic | 40.0% | |
| GCTTCATGGGTATTTAGCAT+TGG | - | chr1_2:53647150-53647169 | Msa0077130:intron | 40.0% | |
| ACTCATGGCTACATTGCTTA+AGG | + | chr1_2:53647270-53647289 | None:intergenic | 40.0% | |
| TGTGATCTCACTGTGATCAA+CGG | + | chr1_2:53647302-53647321 | None:intergenic | 40.0% | |
| ! | CAACATGGGTTGAACGTGTA+AGG | + | chr1_2:53642485-53642504 | None:intergenic | 45.0% |
| AATTACCAGGGACATCAAGG+AGG | - | chr1_2:53642679-53642698 | Msa0077130:CDS | 45.0% | |
| ! | GGGTCCAGTTGTTATTAGAG+AGG | + | chr1_2:53642976-53642995 | None:intergenic | 45.0% |
| ATGATGGCAGATGTCATGCA+AGG | - | chr1_2:53644947-53644966 | Msa0077130:intron | 45.0% | |
| !! | TCTGCTTTTGCCCTTGAGTA+TGG | - | chr1_2:53645062-53645081 | Msa0077130:intron | 45.0% |
| CCAGAAGTCTCCATACTCAA+GGG | + | chr1_2:53645075-53645094 | None:intergenic | 45.0% | |
| ACCAGAAGTCTCCATACTCA+AGG | + | chr1_2:53645076-53645095 | None:intergenic | 45.0% | |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | + | chr1_2:53645116-53645135 | None:intergenic | 45.0% |
| !! | GCTTCAGGCTTTGAAAGTTG+AGG | + | chr1_2:53645161-53645180 | None:intergenic | 45.0% |
| ACTGGGAATTGTTCCAAAGC+TGG | + | chr1_2:53645317-53645336 | None:intergenic | 45.0% | |
| ! | TTTTTCCAGGGATAAGAGGC+AGG | - | chr1_2:53645547-53645566 | Msa0077130:intron | 45.0% |
| TAAATCCTGCCTCTTATCCC+TGG | + | chr1_2:53645555-53645574 | None:intergenic | 45.0% | |
| TCAAACCCCGACGGAAATTA+TGG | - | chr1_2:53645800-53645819 | Msa0077130:intron | 45.0% | |
| CACTTCCATAATTTCCGTCG+GGG | + | chr1_2:53645808-53645827 | None:intergenic | 45.0% | |
| ! | CCATCATAGATGGGAGCTTT+TGG | + | chr1_2:53645861-53645880 | None:intergenic | 45.0% |
| CCAAAAGCTCCCATCTATGA+TGG | - | chr1_2:53645858-53645877 | Msa0077130:intron | 45.0% | |
| GAAGCCAACACAAGATTGTG+TGG | - | chr1_2:53646113-53646132 | Msa0077130:intron | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | + | chr1_2:53646120-53646139 | None:intergenic | 45.0% | |
| CTTACAAAACTGAGACAGGG+TGG | - | chr1_2:53646824-53646843 | Msa0077130:intron | 45.0% | |
| GGTGGGCAATTGTAACCAAA+GGG | - | chr1_2:53646842-53646861 | Msa0077130:intron | 45.0% | |
| GGAAGTCACAATAGACCCTT+TGG | + | chr1_2:53646860-53646879 | None:intergenic | 45.0% | |
| ATTGTGACTTCCGTTGGTCA+TGG | - | chr1_2:53646868-53646887 | Msa0077130:intron | 45.0% | |
| TTGTGACTTCCGTTGGTCAT+GGG | - | chr1_2:53646869-53646888 | Msa0077130:intron | 45.0% | |
| AACTGTAGTCCCATGACCAA+CGG | + | chr1_2:53646881-53646900 | None:intergenic | 45.0% | |
| !!! | GACTACAGTTTTGAAGACCG+TGG | - | chr1_2:53646891-53646910 | Msa0077130:intron | 45.0% |
| !!! | TACAGTTTTGAAGACCGTGG+CGG | - | chr1_2:53646894-53646913 | Msa0077130:intron | 45.0% |
| TAAGGTCAATGGCGAGCATT+AGG | - | chr1_2:53647125-53647144 | Msa0077130:intron | 45.0% | |
| CGAGCATTAGGTAGCTTCAT+GGG | - | chr1_2:53647137-53647156 | Msa0077130:intron | 45.0% | |
| CAACGGTAATGCAAGACTCA+TGG | + | chr1_2:53647285-53647304 | None:intergenic | 45.0% | |
| !! | AATTATATACATTTATTTAT+GGG | + | chr1_2:53643202-53643221 | None:intergenic | 5.0% |
| !! | TAATTATATACATTTATTTA+TGG | + | chr1_2:53643203-53643222 | None:intergenic | 5.0% |
| !! | TTTAGTAAAATAAAAAAAAT+TGG | - | chr1_2:53644010-53644029 | Msa0077130:intron | 5.0% |
| !! | TTTCATTATTATAAAATTTA+GGG | + | chr1_2:53644603-53644622 | None:intergenic | 5.0% |
| !!! | TTTTCATTATTATAAAATTT+AGG | + | chr1_2:53644604-53644623 | None:intergenic | 5.0% |
| !!! | AAATTTTATAATAATGAAAA+TGG | - | chr1_2:53644604-53644623 | Msa0077130:CDS | 5.0% |
| !! | AATATTAAAATTTACTAAAA+AGG | - | chr1_2:53644636-53644655 | Msa0077130:CDS | 5.0% |
| GGTCCACGTTAGACAAACTC+AGG | + | chr1_2:53643953-53643972 | None:intergenic | 50.0% | |
| TAACGTGGACCTCCGAAGAA+AGG | - | chr1_2:53643962-53643981 | Msa0077130:intron | 50.0% | |
| AACGTGGACCTCCGAAGAAA+GGG | - | chr1_2:53643963-53643982 | Msa0077130:intron | 50.0% | |
| TCCGAAGAAAGGGGTCCAAA+GGG | - | chr1_2:53643973-53643992 | Msa0077130:intron | 50.0% | |
| TCCCTTTGGACCCCTTTCTT+CGG | + | chr1_2:53643977-53643996 | None:intergenic | 50.0% | |
| AATTGACAAGGGCCTCCCTT+TGG | + | chr1_2:53643991-53644010 | None:intergenic | 50.0% | |
| CCCTTGAGTATGGAGACTTC+TGG | - | chr1_2:53645072-53645091 | Msa0077130:intron | 50.0% | |
| ! | TGGCAAGTGGTTCTGTTGGT+TGG | + | chr1_2:53645112-53645131 | None:intergenic | 50.0% |
| CAACTCGCGTCATGACATCA+AGG | - | chr1_2:53645274-53645293 | Msa0077130:intron | 50.0% | |
| GAAGCTCTTTCAAACCCCGA+CGG | - | chr1_2:53645791-53645810 | Msa0077130:intron | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | - | chr1_2:53646126-53646145 | Msa0077130:intron | 50.0% | |
| !! | AATGTGGGTTGATTCCCTGC+TGG | - | chr1_2:53646408-53646427 | Msa0077130:intron | 50.0% |
| GGAGTCTCAACAGCCAAATG+TGG | - | chr1_2:53646708-53646727 | Msa0077130:intron | 50.0% | |
| GGGTGGGCAATTGTAACCAA+AGG | - | chr1_2:53646841-53646860 | Msa0077130:intron | 50.0% | |
| GGGTCTATTGTGACTTCCGT+TGG | - | chr1_2:53646862-53646881 | Msa0077130:intron | 50.0% | |
| CCATTTGTCAAACTCCGCCA+CGG | + | chr1_2:53646911-53646930 | None:intergenic | 50.0% | |
| TCCAGATTGTCACCGCACAA+TGG | - | chr1_2:53647065-53647084 | Msa0077130:intron | 50.0% | |
| TCCATTGTGCGGTGACAATC+TGG | + | chr1_2:53647069-53647088 | None:intergenic | 50.0% | |
| GCGAGCATTAGGTAGCTTCA+TGG | - | chr1_2:53647136-53647155 | Msa0077130:intron | 50.0% | |
| GGTGAAGTGAAGCTAGCTGG+TGG | + | chr1_2:53642730-53642749 | None:intergenic | 55.0% | |
| AGCGGTGAAGTGAAGCTAGC+TGG | + | chr1_2:53642733-53642752 | None:intergenic | 55.0% | |
| ACGTGGACCTCCGAAGAAAG+GGG | - | chr1_2:53643964-53643983 | Msa0077130:intron | 55.0% | |
| CTTTGGACCCCTTTCTTCGG+AGG | + | chr1_2:53643974-53643993 | None:intergenic | 55.0% | |
| CTCCGAAGAAAGGGGTCCAA+AGG | - | chr1_2:53643972-53643991 | Msa0077130:intron | 55.0% | |
| GAAGAAAGGGGTCCAAAGGG+AGG | - | chr1_2:53643976-53643995 | Msa0077130:intron | 55.0% | |
| ! | CAGATGTCATGCAAGGCACC+AGG | - | chr1_2:53644954-53644973 | Msa0077130:intron | 55.0% |
| TCCAGCTCTTGCACCAGCTT+TGG | - | chr1_2:53645301-53645320 | Msa0077130:intron | 55.0% | |
| TCCAAAGCTGGTGCAAGAGC+TGG | + | chr1_2:53645305-53645324 | None:intergenic | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | - | chr1_2:53646129-53646148 | Msa0077130:intron | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | - | chr1_2:53646134-53646153 | Msa0077130:intron | 55.0% | |
| ! | CCGTGGCGGAGTTTGACAAA+TGG | - | chr1_2:53646908-53646927 | Msa0077130:intron | 55.0% |
| CCAGACCTCCTTGATGTCCC+TGG | + | chr1_2:53642687-53642706 | None:intergenic | 60.0% | |
| CCAGGGACATCAAGGAGGTC+TGG | - | chr1_2:53642684-53642703 | Msa0077130:CDS | 60.0% | |
| TCAAGGAGGTCTGGACCACC+TGG | - | chr1_2:53642693-53642712 | Msa0077130:CDS | 60.0% | |
| ! | GTCATGCAAGGCACCAGGTG+AGG | - | chr1_2:53644959-53644978 | Msa0077130:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 53642315 | 53647394 | 53642315 | ID=Msa0077130;Name=Msa0077130 |
| chr1_2 | mRNA | 53642315 | 53647394 | 53642315 | ID=Msa0077130-mRNA-1;Parent=Msa0077130;Name=Msa0077130-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.83|0.85|1|1|1|7|248|669 |
| chr1_2 | exon | 53642315 | 53643135 | 53642315 | ID=Msa0077130-mRNA-1:exon:16625;Parent=Msa0077130-mRNA-1 |
| chr1_2 | exon | 53643253 | 53643711 | 53643253 | ID=Msa0077130-mRNA-1:exon:16624;Parent=Msa0077130-mRNA-1 |
| chr1_2 | exon | 53643813 | 53643946 | 53643813 | ID=Msa0077130-mRNA-1:exon:16623;Parent=Msa0077130-mRNA-1 |
| chr1_2 | exon | 53644059 | 53644153 | 53644059 | ID=Msa0077130-mRNA-1:exon:16622;Parent=Msa0077130-mRNA-1 |
| chr1_2 | exon | 53644304 | 53644752 | 53644304 | ID=Msa0077130-mRNA-1:exon:16621;Parent=Msa0077130-mRNA-1 |
| chr1_2 | exon | 53646929 | 53647021 | 53646929 | ID=Msa0077130-mRNA-1:exon:16620;Parent=Msa0077130-mRNA-1 |
| chr1_2 | exon | 53647188 | 53647394 | 53647188 | ID=Msa0077130-mRNA-1:exon:16619;Parent=Msa0077130-mRNA-1 |
| chr1_2 | CDS | 53647188 | 53647394 | 53647188 | ID=Msa0077130-mRNA-1:cds;Parent=Msa0077130-mRNA-1 |
| chr1_2 | CDS | 53646929 | 53647021 | 53646929 | ID=Msa0077130-mRNA-1:cds;Parent=Msa0077130-mRNA-1 |
| chr1_2 | CDS | 53644304 | 53644752 | 53644304 | ID=Msa0077130-mRNA-1:cds;Parent=Msa0077130-mRNA-1 |
| chr1_2 | CDS | 53644059 | 53644153 | 53644059 | ID=Msa0077130-mRNA-1:cds;Parent=Msa0077130-mRNA-1 |
| chr1_2 | CDS | 53643813 | 53643946 | 53643813 | ID=Msa0077130-mRNA-1:cds;Parent=Msa0077130-mRNA-1 |
| chr1_2 | CDS | 53643253 | 53643711 | 53643253 | ID=Msa0077130-mRNA-1:cds;Parent=Msa0077130-mRNA-1 |
| chr1_2 | CDS | 53642563 | 53643135 | 53642563 | ID=Msa0077130-mRNA-1:cds;Parent=Msa0077130-mRNA-1 |
| chr1_2 | three_prime_UTR | 53642315 | 53642562 | 53642315 | ID=Msa0077130-mRNA-1:three_prime_utr;Parent=Msa0077130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
