Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125110 | XP_003590763.1 | 97.309 | 669 | 18 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125110 | sp|Q9SS87|SEOB_ARATH | 31.360 | 625 | 346 | 23 | 109 | 661 | 116 | 729 | 6.71e-87 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125110 | E2FKJ5 | 97.309 | 669 | 18 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1346 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029880 | Msa0125110 | 0.832104 | 1.143768e-55 | -8.615850e-47 |
| Msa0029890 | Msa0125110 | 0.819551 | 1.094383e-52 | -8.615850e-47 |
| Msa0029900 | Msa0125110 | 0.878135 | 3.586192e-69 | -8.615850e-47 |
| Msa0029910 | Msa0125110 | 0.840540 | 8.176598e-58 | -8.615850e-47 |
| Msa0077120 | Msa0125110 | 0.835182 | 1.947921e-56 | -8.615850e-47 |
| Msa0077130 | Msa0125110 | 0.863831 | 1.879973e-64 | -8.615850e-47 |
| Msa0077140 | Msa0125110 | 0.832804 | 7.668587e-56 | -8.615850e-47 |
| Msa0125110 | Msa0125120 | 0.880302 | 6.138034e-70 | -8.615850e-47 |
| Msa0125110 | Msa0169860 | 0.835960 | 1.237522e-56 | -8.615850e-47 |
| Msa0125110 | Msa0169870 | 0.828602 | 8.205102e-55 | -8.615850e-47 |
| Msa0125110 | Msa0169920 | 0.843427 | 1.410851e-58 | -8.615850e-47 |
| Msa0125110 | Msa0170090 | 0.892440 | 1.583958e-74 | -8.615850e-47 |
| Msa0125110 | Msa1464160 | 0.815361 | 9.616942e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125110 | MtrunA17_Chr1g0186851 | 97.309 | 669 | 18 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1346 |
| Msa0125110 | MtrunA17_Chr1g0186861 | 83.133 | 664 | 110 | 1 | 1 | 662 | 1 | 664 | 0.0 | 1144 |
| Msa0125110 | MtrunA17_Chr1g0187041 | 77.661 | 667 | 147 | 1 | 1 | 665 | 1 | 667 | 0.0 | 1046 |
| Msa0125110 | MtrunA17_Chr1g0186911 | 84.342 | 562 | 88 | 0 | 101 | 662 | 1 | 562 | 0.0 | 983 |
| Msa0125110 | MtrunA17_Chr1g0186841 | 60.061 | 656 | 257 | 5 | 17 | 669 | 18 | 671 | 0.0 | 813 |
| Msa0125110 | MtrunA17_Chr1g0165791 | 35.982 | 667 | 403 | 10 | 20 | 668 | 25 | 685 | 3.25e-148 | 446 |
| Msa0125110 | MtrunA17_Chr7g0226571 | 34.150 | 694 | 398 | 19 | 24 | 663 | 25 | 713 | 7.52e-113 | 355 |
| Msa0125110 | MtrunA17_Chr1g0187001 | 31.893 | 671 | 399 | 15 | 20 | 669 | 11 | 644 | 7.73e-104 | 330 |
| Msa0125110 | MtrunA17_Chr3g0116601 | 31.778 | 686 | 411 | 20 | 23 | 659 | 27 | 704 | 1.24e-98 | 318 |
| Msa0125110 | MtrunA17_Chr1g0186991 | 31.091 | 669 | 406 | 17 | 20 | 663 | 31 | 669 | 1.48e-98 | 317 |
| Msa0125110 | MtrunA17_Chr8g0381301 | 31.358 | 692 | 417 | 21 | 22 | 660 | 17 | 703 | 1.75e-98 | 317 |
| Msa0125110 | MtrunA17_Chr1g0186981 | 30.163 | 673 | 406 | 16 | 20 | 666 | 34 | 668 | 1.67e-93 | 303 |
| Msa0125110 | MtrunA17_Chr1g0186901 | 78.641 | 103 | 20 | 1 | 1 | 101 | 1 | 103 | 2.16e-48 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125110 | AT3G01680.1 | 31.360 | 625 | 346 | 23 | 109 | 661 | 116 | 729 | 6.83e-88 | 290 |
| Msa0125110 | AT3G01670.1 | 25.743 | 707 | 436 | 21 | 22 | 659 | 134 | 820 | 1.31e-54 | 201 |
| Msa0125110 | AT3G01670.2 | 25.743 | 707 | 436 | 21 | 22 | 659 | 158 | 844 | 1.82e-54 | 200 |
| Msa0125110 | AT1G67790.1 | 24.212 | 603 | 399 | 19 | 96 | 657 | 79 | 664 | 6.72e-40 | 156 |
Find 158 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTATATGATCATAAAT+TGG | 0.136694 | 1_3:-53403005 | None:intergenic |
| GGAAATTATGGAAGTGTTTA+AGG | 0.152895 | 1_3:+53402741 | Msa0125110:CDS |
| AAAACATCGCAATGAAATTT+TGG | 0.167607 | 1_3:+53402118 | Msa0125110:CDS |
| TTTCTTCTTAGTCTTCTTTA+TGG | 0.173728 | 1_3:+53404122 | Msa0125110:three_prime_UTR |
| CATTGATTCTTCTTTGGATT+TGG | 0.187378 | 1_3:-53403294 | None:intergenic |
| TATGTACTTGATACCTTTAA+TGG | 0.197622 | 1_3:-53403150 | None:intergenic |
| CATCACTTTGCACCCATTAA+AGG | 0.204242 | 1_3:+53403137 | Msa0125110:CDS |
| AATTCCCAGTTGATGTATAT+TGG | 0.204655 | 1_3:+53402258 | Msa0125110:CDS |
| ACATTGATATAAAGATTAAA+TGG | 0.204759 | 1_3:+53403354 | Msa0125110:CDS |
| TGTTTAAGGTGCTGATATTT+TGG | 0.216136 | 1_3:+53402755 | Msa0125110:CDS |
| TTGGGTCATTGATTCTTCTT+TGG | 0.216483 | 1_3:-53403300 | None:intergenic |
| GAAAAGTCTGTCATCATTTA+TGG | 0.229545 | 1_3:+53403496 | Msa0125110:CDS |
| CTTGATTATGCCTAATGATT+TGG | 0.255438 | 1_3:-53402060 | None:intergenic |
| TCAAACCCCGACGGAAATTA+TGG | 0.258203 | 1_3:+53402729 | Msa0125110:CDS |
| CCATCGTAGATGGGAGCTTT+TGG | 0.262564 | 1_3:-53402787 | None:intergenic |
| AGGCAGGATTTATCTCATTT+TGG | 0.270915 | 1_3:+53402492 | Msa0125110:CDS |
| ATTCCATATGATTCAAGTTT+GGG | 0.287868 | 1_3:+53403250 | Msa0125110:CDS |
| TGCTCATCAGACATGGTTAA+AGG | 0.291226 | 1_3:-53400371 | None:intergenic |
| CATTCCATATGATTCAAGTT+TGG | 0.299165 | 1_3:+53403249 | Msa0125110:CDS |
| CAAATGTGGTTAACAACTTC+TGG | 0.309632 | 1_3:+53403638 | Msa0125110:CDS |
| CAGAAGTTGTTAACCACATT+TGG | 0.310909 | 1_3:-53403637 | None:intergenic |
| TCCAGCTCTTGCACCAGCTT+TGG | 0.314260 | 1_3:+53402232 | Msa0125110:CDS |
| ATTCCCAGTTGATGTATATT+GGG | 0.322317 | 1_3:+53402259 | Msa0125110:CDS |
| AAAACTTGTCAAACTATTCA+TGG | 0.324557 | 1_3:+53401946 | Msa0125110:CDS |
| CTTGAGATTCCTAATGTTGC+TGG | 0.329358 | 1_3:+53403934 | Msa0125110:CDS |
| TCACAAATGCAACTAGAATA+AGG | 0.336343 | 1_3:+53404234 | Msa0125110:three_prime_UTR |
| AATCAACCCACATTAATTCT+TGG | 0.337130 | 1_3:-53403319 | None:intergenic |
| CATGTCTGATGAGCACATTT+TGG | 0.345477 | 1_3:+53400379 | Msa0125110:CDS |
| CTCCCCAAACTTGAATCATA+TGG | 0.346723 | 1_3:-53403253 | None:intergenic |
| GGTTAACAACTTCTGGAAAA+AGG | 0.351962 | 1_3:+53403645 | Msa0125110:CDS |
| ATAACCCAATATACATCAAC+TGG | 0.359445 | 1_3:-53402263 | None:intergenic |
| ATTCAAGTTTGGGGAGTAAA+GGG | 0.363993 | 1_3:+53403260 | Msa0125110:CDS |
| TCTGGACACTCGATAAAATC+TGG | 0.364613 | 1_3:-53403964 | None:intergenic |
| CTCTTGAGTATGGAGACTTC+TGG | 0.369562 | 1_3:+53402003 | Msa0125110:CDS |
| TCTTCTTTGGATTTGGAGTA+AGG | 0.371960 | 1_3:-53403287 | None:intergenic |
| GCTATAAGTGTTGCCATAAC+GGG | 0.372899 | 1_3:+53404016 | Msa0125110:CDS |
| TTTAGTGGAACCATCGTAGA+TGG | 0.374609 | 1_3:-53402797 | None:intergenic |
| GTTGAGACTCCAAGCAAAAT+AGG | 0.374745 | 1_3:-53403612 | None:intergenic |
| TCAAAATCGAGATGTCTTCT+TGG | 0.377400 | 1_3:-53402980 | None:intergenic |
| CCGAGCACTAAGTAGCTTCA+TGG | 0.378293 | 1_3:+53404052 | Msa0125110:exon |
| TCTTTATATGATCATAAATT+GGG | 0.380456 | 1_3:-53403004 | None:intergenic |
| TCCATTGTGCGGTGACAATC+TGG | 0.382744 | 1_3:-53403982 | None:intergenic |
| ATGTACTTGATACCTTTAAT+GGG | 0.385849 | 1_3:-53403149 | None:intergenic |
| AAAGATGTGGCGATCAATAA+AGG | 0.389351 | 1_3:+53403847 | Msa0125110:CDS |
| ACTCATGGCTACATTGCTTA+AGG | 0.392544 | 1_3:-53404184 | None:intergenic |
| AGCTACTTAGTGCTCGGAAT+TGG | 0.395477 | 1_3:-53404046 | None:intergenic |
| AATTGGCCTTATCCCCGTTA+TGG | 0.399829 | 1_3:-53404029 | None:intergenic |
| GGACTCAACACAAGAAATAA+AGG | 0.400912 | 1_3:-53403200 | None:intergenic |
| CAGACATGGTTAAAGGGTTA+TGG | 0.416704 | 1_3:-53400364 | None:intergenic |
| CATCAAACTTAGTGTCACTA+TGG | 0.419012 | 1_3:-53400424 | None:intergenic |
| TAATCGCGGCATCATTTGCT+AGG | 0.429478 | 1_3:-53403567 | None:intergenic |
| AACAAATACTGTCACACAAC+AGG | 0.430975 | 1_3:+53403702 | Msa0125110:CDS |
| TATGATCATATAAAGAAAAC+AGG | 0.436408 | 1_3:+53403011 | Msa0125110:CDS |
| ATTGTGACTTCCGTTGGTCA+TGG | 0.436478 | 1_3:+53403784 | Msa0125110:CDS |
| TAAAGGTATCAAGTACATAA+AGG | 0.437070 | 1_3:+53403154 | Msa0125110:CDS |
| GAACCACTTGCCAAATCATT+AGG | 0.438307 | 1_3:+53402050 | Msa0125110:CDS |
| ATCAACCCACATTAATTCTT+GGG | 0.438934 | 1_3:-53403318 | None:intergenic |
| GATTCAAGTTTGGGGAGTAA+AGG | 0.451419 | 1_3:+53403259 | Msa0125110:CDS |
| GTTCTTGTTCATTTCAACTC+TGG | 0.451654 | 1_3:+53402950 | Msa0125110:CDS |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1_3:-53403059 | None:intergenic |
| CTTTCATACAAGAATGAGAC+AGG | 0.456026 | 1_3:+53403736 | Msa0125110:CDS |
| CTTTGAAGTCAAAGATGCCT+TGG | 0.456421 | 1_3:+53403105 | Msa0125110:CDS |
| AGCTATAAGTGTTGCCATAA+CGG | 0.456608 | 1_3:+53404015 | Msa0125110:CDS |
| CAACATGGGTTGAACGTGTA+AGG | 0.459385 | 1_3:-53400478 | None:intergenic |
| GGAGCTCAACAATTTGATCA+AGG | 0.463664 | 1_3:+53402139 | Msa0125110:CDS |
| TCCAAAGCTGGTGCAAGAGC+TGG | 0.468376 | 1_3:-53402233 | None:intergenic |
| TCAGGGACATCAAGGAGGTC+TGG | 0.469377 | 1_3:+53400671 | Msa0125110:intron |
| GTGTTGCCATAACGGGGATA+AGG | 0.469992 | 1_3:+53404023 | Msa0125110:CDS |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1_3:+53401957 | Msa0125110:CDS |
| TATAATTATCAGGGACATCA+AGG | 0.473246 | 1_3:+53400663 | Msa0125110:intron |
| CATTGATATAAAGATTAAAT+GGG | 0.479358 | 1_3:+53403355 | Msa0125110:CDS |
| GGAAGTCACAATAGACCCTT+TGG | 0.480483 | 1_3:-53403773 | None:intergenic |
| CAGTGGCCGAGTTTGACAAA+TGG | 0.480489 | 1_3:+53403824 | Msa0125110:CDS |
| TTGTAAGCTATTTCCTCACC+TGG | 0.482226 | 1_3:-53401903 | None:intergenic |
| GCTCATCAGACATGGTTAAA+GGG | 0.484807 | 1_3:-53400370 | None:intergenic |
| TTATATCAATGTCAGCCAGC+AGG | 0.486824 | 1_3:-53403343 | None:intergenic |
| TTGTGACTTCCGTTGGTCAT+GGG | 0.487496 | 1_3:+53403785 | Msa0125110:CDS |
| ACAATTTGATCAAGGCAACT+TGG | 0.492049 | 1_3:+53402147 | Msa0125110:CDS |
| ATCTTTCCATTTGTCAAACT+CGG | 0.492560 | 1_3:-53403830 | None:intergenic |
| TCACAATGCACTATACAGAT+TGG | 0.496814 | 1_3:+53402558 | Msa0125110:CDS |
| CTGGTGGATTAATGTTATCC+AGG | 0.508936 | 1_3:-53400698 | None:intergenic |
| ACACTTCCATAATTTCCGTC+GGG | 0.516308 | 1_3:-53402735 | None:intergenic |
| ACTGGGAATTGTTCCAAAGC+TGG | 0.521352 | 1_3:-53402245 | None:intergenic |
| CTGAGTAACAATTGCAACAA+TGG | 0.523241 | 1_3:-53402291 | None:intergenic |
| CAATGACCCAAGAATTAATG+TGG | 0.523498 | 1_3:+53403312 | Msa0125110:CDS |
| CATTGAAATCATCATCGAGT+TGG | 0.523833 | 1_3:+53402175 | Msa0125110:CDS |
| CTGGACACTCGATAAAATCT+GGG | 0.524375 | 1_3:-53403963 | None:intergenic |
| TCAAGGAGGTCTGGACCACC+TGG | 0.524704 | 1_3:+53400680 | Msa0125110:CDS |
| AAACTTGTCAAACTATTCAT+GGG | 0.529229 | 1_3:+53401947 | Msa0125110:CDS |
| AATCGCGGCATCATTTGCTA+GGG | 0.530967 | 1_3:-53403566 | None:intergenic |
| ATCATTCCATTCCTCCACAA+TGG | 0.531780 | 1_3:-53403060 | None:intergenic |
| AATGTGGGTTGATTCCCTGC+TGG | 0.532892 | 1_3:+53403328 | Msa0125110:CDS |
| CAACAATTCACTAAGTATGC+TGG | 0.534554 | 1_3:+53403541 | Msa0125110:CDS |
| ATGCCTAATGATTTGGCAAG+TGG | 0.539047 | 1_3:-53402053 | None:intergenic |
| TGTGAATAAGTGCTCGCACT+AGG | 0.544630 | 1_3:-53400319 | None:intergenic |
| GCTTCATGGGTACTTAGCAT+TGG | 0.545020 | 1_3:+53404066 | Msa0125110:three_prime_UTR |
| CGATGGTTCCACTAAAACAC+TGG | 0.545113 | 1_3:+53402804 | Msa0125110:CDS |
| CAGATGTCATGCAAGGCACC+AGG | 0.546738 | 1_3:+53401885 | Msa0125110:intron |
| ATGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1_3:+53403515 | Msa0125110:CDS |
| AGCGGTGAAGTGAAGCTAGC+TGG | 0.549501 | 1_3:-53400717 | None:intergenic |
| CATTTATGGAGGTAAAGATA+AGG | 0.555548 | 1_3:+53403510 | Msa0125110:CDS |
| AACACTTCCATAATTTCCGT+CGG | 0.557817 | 1_3:-53402736 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1_3:+53402526 | Msa0125110:CDS |
| GCTTCAGGCTTCAAAAGTTG+AGG | 0.563018 | 1_3:-53402089 | None:intergenic |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1_3:+53403054 | Msa0125110:CDS |
| CTTCTTTGGATTTGGAGTAA+GGG | 0.567493 | 1_3:-53403286 | None:intergenic |
| TATATCAATGTCAGCCAGCA+GGG | 0.567784 | 1_3:-53403342 | None:intergenic |
| CGAGCACTAAGTAGCTTCAT+GGG | 0.568345 | 1_3:+53404053 | Msa0125110:exon |
| CAGAATATAACAAGTTACTC+AGG | 0.569457 | 1_3:+53402698 | Msa0125110:CDS |
| CCATGAAGCTACTTAGTGCT+CGG | 0.569780 | 1_3:-53404052 | None:intergenic |
| GGGTCTATTGTGACTTCCGT+TGG | 0.572144 | 1_3:+53403778 | Msa0125110:CDS |
| CAAAATGTGCTCATCAGACA+TGG | 0.576873 | 1_3:-53400378 | None:intergenic |
| CAACGGTAATGCAAGACTCA+TGG | 0.577072 | 1_3:-53404199 | None:intergenic |
| TTAGTGGAACCATCGTAGAT+GGG | 0.578940 | 1_3:-53402796 | None:intergenic |
| GGGTGGGCAGTTGTAACCAA+AGG | 0.579928 | 1_3:+53403757 | Msa0125110:CDS |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1_3:-53403037 | None:intergenic |
| CAGCAACATTAGGAATCTCA+AGG | 0.582036 | 1_3:-53403933 | None:intergenic |
| TGATGTAGAATCTTTCCTTG+TGG | 0.585970 | 1_3:-53403221 | None:intergenic |
| TTTCTTGTGTTGAGTCCACA+AGG | 0.590992 | 1_3:+53403206 | Msa0125110:CDS |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1_3:+53403046 | Msa0125110:CDS |
| GAAGCCAACACAAGATTGTG+TGG | 0.596089 | 1_3:+53403033 | Msa0125110:CDS |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.596869 | 1_3:-53402044 | None:intergenic |
| GTCATGCAAGGCACCAGGTG+AGG | 0.600067 | 1_3:+53401890 | Msa0125110:CDS |
| AACTGTAGTCCCATGACCAA+CGG | 0.603887 | 1_3:-53403794 | None:intergenic |
| CAACTCGCGTCATGACATCA+AGG | 0.608552 | 1_3:+53402205 | Msa0125110:CDS |
| GCAGAACGTTATCAACAACA+TGG | 0.612191 | 1_3:-53400493 | None:intergenic |
| TTCCATATGATTCAAGTTTG+GGG | 0.613604 | 1_3:+53403251 | Msa0125110:CDS |
| GGTGGGCAGTTGTAACCAAA+GGG | 0.617533 | 1_3:+53403758 | Msa0125110:CDS |
| GTGCGAGCACTTATTCACAT+TGG | 0.618062 | 1_3:+53400323 | Msa0125110:CDS |
| TGTGATCTCACTGTGATCAA+CGG | 0.622745 | 1_3:-53404216 | None:intergenic |
| CACTTCCATAATTTCCGTCG+GGG | 0.623012 | 1_3:-53402734 | None:intergenic |
| TTTGAAGCAAATTAACTCTG+AGG | 0.632146 | 1_3:+53400746 | Msa0125110:CDS |
| TCCAGATTGTCACCGCACAA+TGG | 0.640478 | 1_3:+53403981 | Msa0125110:CDS |
| CAGAACGTTATCAACAACAT+GGG | 0.651391 | 1_3:-53400492 | None:intergenic |
| GGAGTCTCAACAGCCAAATG+TGG | 0.652213 | 1_3:+53403624 | Msa0125110:CDS |
| AGGTATCAAGTACATAAAGG+AGG | 0.656067 | 1_3:+53403157 | Msa0125110:CDS |
| AAGTCTGTCATCATTTATGG+AGG | 0.656284 | 1_3:+53403499 | Msa0125110:CDS |
| GTGGATTAATGTTATCCAGG+TGG | 0.656925 | 1_3:-53400695 | None:intergenic |
| AATGACCCAAGAATTAATGT+GGG | 0.657678 | 1_3:+53403313 | Msa0125110:CDS |
| CCAAAAGCTCCCATCTACGA+TGG | 0.658024 | 1_3:+53402787 | Msa0125110:CDS |
| GTTTGACAAATGGAAAGATG+TGG | 0.658966 | 1_3:+53403834 | Msa0125110:CDS |
| CTATAAGTGTTGCCATAACG+GGG | 0.660354 | 1_3:+53404017 | Msa0125110:CDS |
| ATTTAGAGAACATCATCACA+AGG | 0.662401 | 1_3:+53403882 | Msa0125110:CDS |
| AAGTGATGCAAAACATACCA+AGG | 0.663117 | 1_3:-53403122 | None:intergenic |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1_3:-53402262 | None:intergenic |
| ATACAAGAATGAGACAGGGT+GGG | 0.667580 | 1_3:+53403741 | Msa0125110:CDS |
| AGTCTTCGTCTGCTTAATCG+CGG | 0.668046 | 1_3:-53403581 | None:intergenic |
| AAGCCAACACAAGATTGTGT+GGG | 0.674200 | 1_3:+53403034 | Msa0125110:CDS |
| TAATGAACACTTCCATTGTG+CGG | 0.679237 | 1_3:-53403993 | None:intergenic |
| AAGGTGAGAGCAAATATGAA+CGG | 0.680495 | 1_3:-53403914 | None:intergenic |
| CATACAAGAATGAGACAGGG+TGG | 0.684075 | 1_3:+53403740 | Msa0125110:CDS |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1_3:+53403049 | Msa0125110:CDS |
| GAAGCTCTTTCAAACCCCGA+CGG | 0.688404 | 1_3:+53402720 | Msa0125110:CDS |
| GGTGAAGTGAAGCTAGCTGG+TGG | 0.705282 | 1_3:-53400714 | None:intergenic |
| ATGATGGCAGATGTCATGCA+AGG | 0.708131 | 1_3:+53401878 | Msa0125110:intron |
| AATTATCAGGGACATCAAGG+AGG | 0.721162 | 1_3:+53400666 | Msa0125110:intron |
| TTTCATACAAGAATGAGACA+GGG | 0.731641 | 1_3:+53403737 | Msa0125110:CDS |
| ATTTGCTTCAAAGTACACAG+CGG | 0.765745 | 1_3:-53400735 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCTAATTTTATCTATT+TGG | - | chr1_3:53400978-53400997 | None:intergenic | 10.0% |
| !! | ATTTAAATTAAGGAATTAAA+GGG | - | chr1_3:53401115-53401134 | None:intergenic | 10.0% |
| !! | AATTTAAATTAAGGAATTAA+AGG | - | chr1_3:53401116-53401135 | None:intergenic | 10.0% |
| !!! | TTCAATTTTTTTTAAAAACA+TGG | - | chr1_3:53401598-53401617 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAAAATTGAAGAA+AGG | + | chr1_3:53401601-53401620 | Msa0125110:intron | 10.0% |
| !!! | ATATGTTTTTATAATTAAAC+AGG | + | chr1_3:53402896-53402915 | Msa0125110:intron | 10.0% |
| !!! | CCAATTTCTATTATATTTTT+CGG | + | chr1_3:53400591-53400610 | Msa0125110:intron | 15.0% |
| !! | AGTTATTTGTATTTAATTAG+AGG | - | chr1_3:53400639-53400658 | None:intergenic | 15.0% |
| !!! | ATAACTTGTTTATAATTATC+AGG | + | chr1_3:53400653-53400672 | Msa0125110:intron | 15.0% |
| !!! | TAACTTGTTTATAATTATCA+GGG | + | chr1_3:53400654-53400673 | Msa0125110:intron | 15.0% |
| !! | TACTATCATCTATTTAAAAA+AGG | - | chr1_3:53401062-53401081 | None:intergenic | 15.0% |
| !! | TCCTTAATTTAAATTAGTTA+AGG | + | chr1_3:53401121-53401140 | Msa0125110:intron | 15.0% |
| !! | TCCTTAACTAATTTAAATTA+AGG | - | chr1_3:53401125-53401144 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTAAAAACATGGA+CGG | - | chr1_3:53401594-53401613 | None:intergenic | 15.0% |
| !! | TATACTATAAAGTTTACATA+AGG | - | chr1_3:53401828-53401847 | None:intergenic | 15.0% |
| !! | TCTTTATATGATCATAAATT+GGG | - | chr1_3:53403007-53403026 | None:intergenic | 15.0% |
| !! | TTCTTTATATGATCATAAAT+TGG | - | chr1_3:53403008-53403027 | None:intergenic | 15.0% |
| !! | ACATTGATATAAAGATTAAA+TGG | + | chr1_3:53403354-53403373 | Msa0125110:CDS | 15.0% |
| !! | CATTGATATAAAGATTAAAT+GGG | + | chr1_3:53403355-53403374 | Msa0125110:CDS | 15.0% |
| !! | CCGAAAAATATAATAGAAAT+TGG | - | chr1_3:53400594-53400613 | None:intergenic | 20.0% |
| !!! | TTAACAAATTTGTTTTCTTC+CGG | + | chr1_3:53401021-53401040 | Msa0125110:intron | 20.0% |
| !!! | CATTTTGTTATATTGAAGAA+AGG | + | chr1_3:53401561-53401580 | Msa0125110:intron | 20.0% |
| !!! | TTTCATGAATTTGTTTAATG+TGG | - | chr1_3:53401715-53401734 | None:intergenic | 20.0% |
| !! | ACATTAAACAAATTCATGAA+AGG | + | chr1_3:53401714-53401733 | Msa0125110:intron | 20.0% |
| !!! | GTTTACATAAGGATAATTTT+CGG | - | chr1_3:53401817-53401836 | None:intergenic | 20.0% |
| !! | ACATTTATATTGTATGATGA+TGG | + | chr1_3:53401862-53401881 | Msa0125110:intron | 20.0% |
| !!! | AATAGTTTGACAAGTTTTTT+AGG | - | chr1_3:53401944-53401963 | None:intergenic | 20.0% |
| !! | ACTTGATTATAAACAAAACA+AGG | - | chr1_3:53402396-53402415 | None:intergenic | 20.0% |
| !!! | ATAGTTACAATTTTTTTTCC+AGG | + | chr1_3:53402463-53402482 | Msa0125110:intron | 20.0% |
| !!! | TAGTTACAATTTTTTTTCCA+GGG | + | chr1_3:53402464-53402483 | Msa0125110:intron | 20.0% |
| !! | TATGATCATATAAAGAAAAC+AGG | + | chr1_3:53403011-53403030 | Msa0125110:CDS | 20.0% |
| !! | TTGTAATTTCATGTTATCTT+TGG | + | chr1_3:53403458-53403477 | Msa0125110:intron | 20.0% |
| ! | AAGTAAATGACTCTCTATTA+GGG | - | chr1_3:53400880-53400899 | None:intergenic | 25.0% |
| ! | TAAGTAAATGACTCTCTATT+AGG | - | chr1_3:53400881-53400900 | None:intergenic | 25.0% |
| ! | TGGTTTCTTATATTAACTGT+GGG | - | chr1_3:53400958-53400977 | None:intergenic | 25.0% |
| ! | TTGGTTTCTTATATTAACTG+TGG | - | chr1_3:53400959-53400978 | None:intergenic | 25.0% |
| ! | AAGGAAAAAACACTTAAAAC+CGG | - | chr1_3:53401043-53401062 | None:intergenic | 25.0% |
| ! | TTAAACAAATTCATGAAAGG+AGG | + | chr1_3:53401717-53401736 | Msa0125110:intron | 25.0% |
| ! | TTCAATGAAGATCTTTCTTA+AGG | + | chr1_3:53401745-53401764 | Msa0125110:intron | 25.0% |
| ! | TCAATGAAGATCTTTCTTAA+GGG | + | chr1_3:53401746-53401765 | Msa0125110:intron | 25.0% |
| ! | AAAACTTGTCAAACTATTCA+TGG | + | chr1_3:53401946-53401965 | Msa0125110:CDS | 25.0% |
| ! | AAACTTGTCAAACTATTCAT+GGG | + | chr1_3:53401947-53401966 | Msa0125110:CDS | 25.0% |
| !! | AAAACATCGCAATGAAATTT+TGG | + | chr1_3:53402118-53402137 | Msa0125110:CDS | 25.0% |
| ! | TAATTACAGCTTTACACATT+TGG | + | chr1_3:53402581-53402600 | Msa0125110:intron | 25.0% |
| !! | GAAGAAAATACTTCCATTTT+GGG | - | chr1_3:53402641-53402660 | None:intergenic | 25.0% |
| ! | CAAATAATCTCCATCAATAT+GGG | - | chr1_3:53402663-53402682 | None:intergenic | 25.0% |
| ! | TCAAATAATCTCCATCAATA+TGG | - | chr1_3:53402664-53402683 | None:intergenic | 25.0% |
| ! | ATGTACTTGATACCTTTAAT+GGG | - | chr1_3:53403152-53403171 | None:intergenic | 25.0% |
| ! | TATGTACTTGATACCTTTAA+TGG | - | chr1_3:53403153-53403172 | None:intergenic | 25.0% |
| !!! | TAAAGGTATCAAGTACATAA+AGG | + | chr1_3:53403154-53403173 | Msa0125110:CDS | 25.0% |
| !! | ATTCCATATGATTCAAGTTT+GGG | + | chr1_3:53403250-53403269 | Msa0125110:CDS | 25.0% |
| !! | TTATCTTTGGAAATTGAAGA+AGG | + | chr1_3:53403471-53403490 | Msa0125110:intron | 25.0% |
| !! | TTTCTTCTTAGTCTTCTTTA+TGG | + | chr1_3:53404122-53404141 | Msa0125110:three_prime_UTR | 25.0% |
| ! | AATCTCTTTTCAACATTGCT+GGG | + | chr1_3:53400450-53400469 | Msa0125110:CDS | 30.0% |
| TATAATTATCAGGGACATCA+AGG | + | chr1_3:53400663-53400682 | Msa0125110:intron | 30.0% | |
| ! | TTTGAAGCAAATTAACTCTG+AGG | + | chr1_3:53400746-53400765 | Msa0125110:CDS | 30.0% |
| !!! | TTTTTTAACATGTGCCCTTA+GGG | - | chr1_3:53401163-53401182 | None:intergenic | 30.0% |
| ! | CAATACAAGTTGCTCTTTTT+AGG | - | chr1_3:53401186-53401205 | None:intergenic | 30.0% |
| GTATTAACATGTGTTCATGA+GGG | + | chr1_3:53401256-53401275 | Msa0125110:intron | 30.0% | |
| AAGCAATTTCAAAGGAAGAA+AGG | - | chr1_3:53401313-53401332 | None:intergenic | 30.0% | |
| ! | TGTGTTTGAAGCAATTTCAA+AGG | - | chr1_3:53401321-53401340 | None:intergenic | 30.0% |
| TTTAGACCTCCAAATATGTT+GGG | - | chr1_3:53401417-53401436 | None:intergenic | 30.0% | |
| ! | TTTTAGACCTCCAAATATGT+TGG | - | chr1_3:53401418-53401437 | None:intergenic | 30.0% |
| AATCAAGTTTGATGAGTTCA+AGG | + | chr1_3:53401497-53401516 | Msa0125110:intron | 30.0% | |
| ! | AGATTAGTTGGTCAAAAAGA+GGG | - | chr1_3:53401534-53401553 | None:intergenic | 30.0% |
| ! | TAGATTAGTTGGTCAAAAAG+AGG | - | chr1_3:53401535-53401554 | None:intergenic | 30.0% |
| ! | TCTTTTTGACCAACTAATCT+AGG | + | chr1_3:53401534-53401553 | Msa0125110:intron | 30.0% |
| CTTGATTATGCCTAATGATT+TGG | - | chr1_3:53402063-53402082 | None:intergenic | 30.0% | |
| ! | AATTCCCAGTTGATGTATAT+TGG | + | chr1_3:53402258-53402277 | Msa0125110:CDS | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | + | chr1_3:53402259-53402278 | Msa0125110:CDS | 30.0% |
| TAACCCAATATACATCAACT+GGG | - | chr1_3:53402265-53402284 | None:intergenic | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | - | chr1_3:53402266-53402285 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTTCCAGGGATAAG+AGG | + | chr1_3:53402472-53402491 | Msa0125110:intron | 30.0% |
| ACATCATAATCAGCAAATTG+AGG | + | chr1_3:53402526-53402545 | Msa0125110:CDS | 30.0% | |
| !!! | TTTGTTTTGTCAACCCAAAA+TGG | + | chr1_3:53402625-53402644 | Msa0125110:intron | 30.0% |
| ! | GGAAGAAAATACTTCCATTT+TGG | - | chr1_3:53402642-53402661 | None:intergenic | 30.0% |
| ! | GTATTTTCTTCCCATATTGA+TGG | + | chr1_3:53402650-53402669 | Msa0125110:intron | 30.0% |
| CAGAATATAACAAGTTACTC+AGG | + | chr1_3:53402698-53402717 | Msa0125110:CDS | 30.0% | |
| !! | GGAAATTATGGAAGTGTTTA+AGG | + | chr1_3:53402741-53402760 | Msa0125110:CDS | 30.0% |
| !!! | TGTTTAAGGTGCTGATATTT+TGG | + | chr1_3:53402755-53402774 | Msa0125110:CDS | 30.0% |
| !! | AATACTAACCAGTGTTTTAG+TGG | - | chr1_3:53402815-53402834 | None:intergenic | 30.0% |
| !! | TATCGAAGTGTTGAAAAAGA+AGG | + | chr1_3:53402923-53402942 | Msa0125110:CDS | 30.0% |
| ! | CATTCCATATGATTCAAGTT+TGG | + | chr1_3:53403249-53403268 | Msa0125110:CDS | 30.0% |
| ! | TTCCATATGATTCAAGTTTG+GGG | + | chr1_3:53403251-53403270 | Msa0125110:CDS | 30.0% |
| !! | CATTGATTCTTCTTTGGATT+TGG | - | chr1_3:53403297-53403316 | None:intergenic | 30.0% |
| AATGACCCAAGAATTAATGT+GGG | + | chr1_3:53403313-53403332 | Msa0125110:CDS | 30.0% | |
| ATCAACCCACATTAATTCTT+GGG | - | chr1_3:53403321-53403340 | None:intergenic | 30.0% | |
| AATCAACCCACATTAATTCT+TGG | - | chr1_3:53403322-53403341 | None:intergenic | 30.0% | |
| GAAAAGTCTGTCATCATTTA+TGG | + | chr1_3:53403496-53403515 | Msa0125110:CDS | 30.0% | |
| CATTTATGGAGGTAAAGATA+AGG | + | chr1_3:53403510-53403529 | Msa0125110:CDS | 30.0% | |
| ! | TTCAATTGACCTATTTTGCT+TGG | + | chr1_3:53403603-53403622 | Msa0125110:CDS | 30.0% |
| !! | ATTTGTTTTCTCATGCATCT+TGG | - | chr1_3:53403689-53403708 | None:intergenic | 30.0% |
| TTTCATACAAGAATGAGACA+GGG | + | chr1_3:53403737-53403756 | Msa0125110:CDS | 30.0% | |
| ATCTTTCCATTTGTCAAACT+CGG | - | chr1_3:53403833-53403852 | None:intergenic | 30.0% | |
| ATTTAGAGAACATCATCACA+AGG | + | chr1_3:53403882-53403901 | Msa0125110:CDS | 30.0% | |
| TCACAAATGCAACTAGAATA+AGG | + | chr1_3:53404234-53404253 | Msa0125110:three_prime_UTR | 30.0% | |
| ! | CATCAAACTTAGTGTCACTA+TGG | - | chr1_3:53400427-53400446 | None:intergenic | 35.0% |
| ! | GAATCTCTTTTCAACATTGC+TGG | + | chr1_3:53400449-53400468 | Msa0125110:CDS | 35.0% |
| CAGAACGTTATCAACAACAT+GGG | - | chr1_3:53400495-53400514 | None:intergenic | 35.0% | |
| ATTTGCTTCAAAGTACACAG+CGG | - | chr1_3:53400738-53400757 | None:intergenic | 35.0% | |
| TGGCTCTCTTTAATGACAAT+TGG | + | chr1_3:53400930-53400949 | Msa0125110:intron | 35.0% | |
| !!! | GTTTTTTAACATGTGCCCTT+AGG | - | chr1_3:53401164-53401183 | None:intergenic | 35.0% |
| CGTATTAACATGTGTTCATG+AGG | + | chr1_3:53401255-53401274 | Msa0125110:intron | 35.0% | |
| ATGTGGGCTTATTTGAGAAA+AGG | - | chr1_3:53401349-53401368 | None:intergenic | 35.0% | |
| GAAGAATTGATACCAGATGT+GGG | - | chr1_3:53401365-53401384 | None:intergenic | 35.0% | |
| AAATGTGCACCTAGATTAGT+TGG | - | chr1_3:53401546-53401565 | None:intergenic | 35.0% | |
| ! | AACTATTCATGGGTTGCAAA+AGG | + | chr1_3:53401957-53401976 | Msa0125110:CDS | 35.0% |
| ACAATTTGATCAAGGCAACT+TGG | + | chr1_3:53402147-53402166 | Msa0125110:CDS | 35.0% | |
| CATTGAAATCATCATCGAGT+TGG | + | chr1_3:53402175-53402194 | Msa0125110:CDS | 35.0% | |
| CTGAGTAACAATTGCAACAA+TGG | - | chr1_3:53402294-53402313 | None:intergenic | 35.0% | |
| ! | AGGCAGGATTTATCTCATTT+TGG | + | chr1_3:53402492-53402511 | Msa0125110:CDS | 35.0% |
| TCACAATGCACTATACAGAT+TGG | + | chr1_3:53402558-53402577 | Msa0125110:CDS | 35.0% | |
| AACACTTCCATAATTTCCGT+CGG | - | chr1_3:53402739-53402758 | None:intergenic | 35.0% | |
| GTTCTTGTTCATTTCAACTC+TGG | + | chr1_3:53402950-53402969 | Msa0125110:CDS | 35.0% | |
| TCAAAATCGAGATGTCTTCT+TGG | - | chr1_3:53402983-53403002 | None:intergenic | 35.0% | |
| AAGTGATGCAAAACATACCA+AGG | - | chr1_3:53403125-53403144 | None:intergenic | 35.0% | |
| AGGTATCAAGTACATAAAGG+AGG | + | chr1_3:53403157-53403176 | Msa0125110:CDS | 35.0% | |
| GGACTCAACACAAGAAATAA+AGG | - | chr1_3:53403203-53403222 | None:intergenic | 35.0% | |
| TGATGTAGAATCTTTCCTTG+TGG | - | chr1_3:53403224-53403243 | None:intergenic | 35.0% | |
| ! | ATTCAAGTTTGGGGAGTAAA+GGG | + | chr1_3:53403260-53403279 | Msa0125110:CDS | 35.0% |
| ! | CTTCTTTGGATTTGGAGTAA+GGG | - | chr1_3:53403289-53403308 | None:intergenic | 35.0% |
| ! | TCTTCTTTGGATTTGGAGTA+AGG | - | chr1_3:53403290-53403309 | None:intergenic | 35.0% |
| !! | TTGGGTCATTGATTCTTCTT+TGG | - | chr1_3:53403303-53403322 | None:intergenic | 35.0% |
| CAATGACCCAAGAATTAATG+TGG | + | chr1_3:53403312-53403331 | Msa0125110:CDS | 35.0% | |
| ! | TCTTTGGAAATTGAAGAAGG+AGG | + | chr1_3:53403474-53403493 | Msa0125110:intron | 35.0% |
| AAGTCTGTCATCATTTATGG+AGG | + | chr1_3:53403499-53403518 | Msa0125110:CDS | 35.0% | |
| ATGGAGGTAAAGATAAGGAA+TGG | + | chr1_3:53403515-53403534 | Msa0125110:CDS | 35.0% | |
| CAACAATTCACTAAGTATGC+TGG | + | chr1_3:53403541-53403560 | Msa0125110:CDS | 35.0% | |
| CAGAAGTTGTTAACCACATT+TGG | - | chr1_3:53403640-53403659 | None:intergenic | 35.0% | |
| CAAATGTGGTTAACAACTTC+TGG | + | chr1_3:53403638-53403657 | Msa0125110:CDS | 35.0% | |
| ! | GGTTAACAACTTCTGGAAAA+AGG | + | chr1_3:53403645-53403664 | Msa0125110:CDS | 35.0% |
| AACAAATACTGTCACACAAC+AGG | + | chr1_3:53403702-53403721 | Msa0125110:CDS | 35.0% | |
| CTTTCATACAAGAATGAGAC+AGG | + | chr1_3:53403736-53403755 | Msa0125110:CDS | 35.0% | |
| GTTTGACAAATGGAAAGATG+TGG | + | chr1_3:53403834-53403853 | Msa0125110:CDS | 35.0% | |
| AAAGATGTGGCGATCAATAA+AGG | + | chr1_3:53403847-53403866 | Msa0125110:CDS | 35.0% | |
| AAGGTGAGAGCAAATATGAA+CGG | - | chr1_3:53403917-53403936 | None:intergenic | 35.0% | |
| TAATGAACACTTCCATTGTG+CGG | - | chr1_3:53403996-53404015 | None:intergenic | 35.0% | |
| ! | AGCTATAAGTGTTGCCATAA+CGG | + | chr1_3:53404015-53404034 | Msa0125110:CDS | 35.0% |
| CAGACATGGTTAAAGGGTTA+TGG | - | chr1_3:53400367-53400386 | None:intergenic | 40.0% | |
| GCTCATCAGACATGGTTAAA+GGG | - | chr1_3:53400373-53400392 | None:intergenic | 40.0% | |
| TGCTCATCAGACATGGTTAA+AGG | - | chr1_3:53400374-53400393 | None:intergenic | 40.0% | |
| CAAAATGTGCTCATCAGACA+TGG | - | chr1_3:53400381-53400400 | None:intergenic | 40.0% | |
| ! | CATGTCTGATGAGCACATTT+TGG | + | chr1_3:53400379-53400398 | Msa0125110:CDS | 40.0% |
| GCAGAACGTTATCAACAACA+TGG | - | chr1_3:53400496-53400515 | None:intergenic | 40.0% | |
| AATTATCAGGGACATCAAGG+AGG | + | chr1_3:53400666-53400685 | Msa0125110:intron | 40.0% | |
| ! | GTGGATTAATGTTATCCAGG+TGG | - | chr1_3:53400698-53400717 | None:intergenic | 40.0% |
| !! | CTGGTGGATTAATGTTATCC+AGG | - | chr1_3:53400701-53400720 | None:intergenic | 40.0% |
| ATTAGTTATCATCGCGACTC+TGG | + | chr1_3:53400910-53400929 | Msa0125110:intron | 40.0% | |
| TCGTACTAACTAATGCCCTA+AGG | + | chr1_3:53401145-53401164 | Msa0125110:intron | 40.0% | |
| CGTACTAACTAATGCCCTAA+GGG | + | chr1_3:53401146-53401165 | Msa0125110:intron | 40.0% | |
| TTCTCAAATAAGCCCACATC+TGG | + | chr1_3:53401350-53401369 | Msa0125110:intron | 40.0% | |
| CGAAGAATTGATACCAGATG+TGG | - | chr1_3:53401366-53401385 | None:intergenic | 40.0% | |
| CAAATATGTTGGGACGATCT+TGG | - | chr1_3:53401407-53401426 | None:intergenic | 40.0% | |
| CAAGATCGTCCCAACATATT+TGG | + | chr1_3:53401405-53401424 | Msa0125110:intron | 40.0% | |
| ! | TTGTAAGCTATTTCCTCACC+TGG | - | chr1_3:53401906-53401925 | None:intergenic | 40.0% |
| !! | TCTGCTTTTGCTCTTGAGTA+TGG | + | chr1_3:53401993-53402012 | Msa0125110:CDS | 40.0% |
| GAACCACTTGCCAAATCATT+AGG | + | chr1_3:53402050-53402069 | Msa0125110:CDS | 40.0% | |
| ! | ATGCCTAATGATTTGGCAAG+TGG | - | chr1_3:53402056-53402075 | None:intergenic | 40.0% |
| !!! | CGATGTTTTTTCAGTGCTTC+AGG | - | chr1_3:53402107-53402126 | None:intergenic | 40.0% |
| GGAGCTCAACAATTTGATCA+AGG | + | chr1_3:53402139-53402158 | Msa0125110:CDS | 40.0% | |
| !! | AGCACTGATGTGATACATCA+TGG | + | chr1_3:53402355-53402374 | Msa0125110:intron | 40.0% |
| ACACTTCCATAATTTCCGTC+GGG | - | chr1_3:53402738-53402757 | None:intergenic | 40.0% | |
| TTAGTGGAACCATCGTAGAT+GGG | - | chr1_3:53402799-53402818 | None:intergenic | 40.0% | |
| TTTAGTGGAACCATCGTAGA+TGG | - | chr1_3:53402800-53402819 | None:intergenic | 40.0% | |
| AAGCCAACACAAGATTGTGT+GGG | + | chr1_3:53403034-53403053 | Msa0125110:CDS | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | - | chr1_3:53403062-53403081 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | - | chr1_3:53403063-53403082 | None:intergenic | 40.0% | |
| !! | CTTTGAAGTCAAAGATGCCT+TGG | + | chr1_3:53403105-53403124 | Msa0125110:CDS | 40.0% |
| CATCACTTTGCACCCATTAA+AGG | + | chr1_3:53403137-53403156 | Msa0125110:CDS | 40.0% | |
| TTTCTTGTGTTGAGTCCACA+AGG | + | chr1_3:53403206-53403225 | Msa0125110:CDS | 40.0% | |
| CTCCCCAAACTTGAATCATA+TGG | - | chr1_3:53403256-53403275 | None:intergenic | 40.0% | |
| ! | GATTCAAGTTTGGGGAGTAA+AGG | + | chr1_3:53403259-53403278 | Msa0125110:CDS | 40.0% |
| TATATCAATGTCAGCCAGCA+GGG | - | chr1_3:53403345-53403364 | None:intergenic | 40.0% | |
| TTATATCAATGTCAGCCAGC+AGG | - | chr1_3:53403346-53403365 | None:intergenic | 40.0% | |
| GTTGAGACTCCAAGCAAAAT+AGG | - | chr1_3:53403615-53403634 | None:intergenic | 40.0% | |
| ATACAAGAATGAGACAGGGT+GGG | + | chr1_3:53403741-53403760 | Msa0125110:CDS | 40.0% | |
| !! | TCATGGGACTACAGTTTTGA+AGG | + | chr1_3:53403801-53403820 | Msa0125110:CDS | 40.0% |
| CAGCAACATTAGGAATCTCA+AGG | - | chr1_3:53403936-53403955 | None:intergenic | 40.0% | |
| CTTGAGATTCCTAATGTTGC+TGG | + | chr1_3:53403934-53403953 | Msa0125110:CDS | 40.0% | |
| ! | GGGATTTTTCCAGCAACATT+AGG | - | chr1_3:53403946-53403965 | None:intergenic | 40.0% |
| CTGGACACTCGATAAAATCT+GGG | - | chr1_3:53403966-53403985 | None:intergenic | 40.0% | |
| TCTGGACACTCGATAAAATC+TGG | - | chr1_3:53403967-53403986 | None:intergenic | 40.0% | |
| ! | GCTATAAGTGTTGCCATAAC+GGG | + | chr1_3:53404016-53404035 | Msa0125110:CDS | 40.0% |
| ! | CTATAAGTGTTGCCATAACG+GGG | + | chr1_3:53404017-53404036 | Msa0125110:CDS | 40.0% |
| ACTCATGGCTACATTGCTTA+AGG | - | chr1_3:53404187-53404206 | None:intergenic | 40.0% | |
| TGTGATCTCACTGTGATCAA+CGG | - | chr1_3:53404219-53404238 | None:intergenic | 40.0% | |
| TGTGAATAAGTGCTCGCACT+AGG | - | chr1_3:53400322-53400341 | None:intergenic | 45.0% | |
| GTGCGAGCACTTATTCACAT+TGG | + | chr1_3:53400323-53400342 | Msa0125110:CDS | 45.0% | |
| ! | CAACATGGGTTGAACGTGTA+AGG | - | chr1_3:53400481-53400500 | None:intergenic | 45.0% |
| GATCGTCCCAACATATTTGG+AGG | + | chr1_3:53401408-53401427 | Msa0125110:intron | 45.0% | |
| ATGATGGCAGATGTCATGCA+AGG | + | chr1_3:53401878-53401897 | Msa0125110:intron | 45.0% | |
| CTCTTGAGTATGGAGACTTC+TGG | + | chr1_3:53402003-53402022 | Msa0125110:CDS | 45.0% | |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | - | chr1_3:53402047-53402066 | None:intergenic | 45.0% |
| GCTTCAGGCTTCAAAAGTTG+AGG | - | chr1_3:53402092-53402111 | None:intergenic | 45.0% | |
| ACTGGGAATTGTTCCAAAGC+TGG | - | chr1_3:53402248-53402267 | None:intergenic | 45.0% | |
| ! | TTTTTCCAGGGATAAGAGGC+AGG | + | chr1_3:53402476-53402495 | Msa0125110:intron | 45.0% |
| TAAATCCTGCCTCTTATCCC+TGG | - | chr1_3:53402484-53402503 | None:intergenic | 45.0% | |
| TCAAACCCCGACGGAAATTA+TGG | + | chr1_3:53402729-53402748 | Msa0125110:CDS | 45.0% | |
| CACTTCCATAATTTCCGTCG+GGG | - | chr1_3:53402737-53402756 | None:intergenic | 45.0% | |
| CGATGGTTCCACTAAAACAC+TGG | + | chr1_3:53402804-53402823 | Msa0125110:CDS | 45.0% | |
| GAAGCCAACACAAGATTGTG+TGG | + | chr1_3:53403033-53403052 | Msa0125110:CDS | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | - | chr1_3:53403040-53403059 | None:intergenic | 45.0% | |
| ! | AATCGCGGCATCATTTGCTA+GGG | - | chr1_3:53403569-53403588 | None:intergenic | 45.0% |
| TAATCGCGGCATCATTTGCT+AGG | - | chr1_3:53403570-53403589 | None:intergenic | 45.0% | |
| AGTCTTCGTCTGCTTAATCG+CGG | - | chr1_3:53403584-53403603 | None:intergenic | 45.0% | |
| CATACAAGAATGAGACAGGG+TGG | + | chr1_3:53403740-53403759 | Msa0125110:CDS | 45.0% | |
| GGAAGTCACAATAGACCCTT+TGG | - | chr1_3:53403776-53403795 | None:intergenic | 45.0% | |
| ATTGTGACTTCCGTTGGTCA+TGG | + | chr1_3:53403784-53403803 | Msa0125110:CDS | 45.0% | |
| TTGTGACTTCCGTTGGTCAT+GGG | + | chr1_3:53403785-53403804 | Msa0125110:CDS | 45.0% | |
| AACTGTAGTCCCATGACCAA+CGG | - | chr1_3:53403797-53403816 | None:intergenic | 45.0% | |
| !!! | GACTACAGTTTTGAAGGCAG+TGG | + | chr1_3:53403807-53403826 | Msa0125110:CDS | 45.0% |
| !! | AATTGGCCTTATCCCCGTTA+TGG | - | chr1_3:53404032-53404051 | None:intergenic | 45.0% |
| AGCTACTTAGTGCTCGGAAT+TGG | - | chr1_3:53404049-53404068 | None:intergenic | 45.0% | |
| CCATGAAGCTACTTAGTGCT+CGG | - | chr1_3:53404055-53404074 | None:intergenic | 45.0% | |
| CGAGCACTAAGTAGCTTCAT+GGG | + | chr1_3:53404053-53404072 | Msa0125110:exon | 45.0% | |
| GCTTCATGGGTACTTAGCAT+TGG | + | chr1_3:53404066-53404085 | Msa0125110:three_prime_UTR | 45.0% | |
| CAACGGTAATGCAAGACTCA+TGG | - | chr1_3:53404202-53404221 | None:intergenic | 45.0% | |
| CAACTCGCGTCATGACATCA+AGG | + | chr1_3:53402205-53402224 | Msa0125110:CDS | 50.0% | |
| GAAGCTCTTTCAAACCCCGA+CGG | + | chr1_3:53402720-53402739 | Msa0125110:CDS | 50.0% | |
| ! | CCATCGTAGATGGGAGCTTT+TGG | - | chr1_3:53402790-53402809 | None:intergenic | 50.0% |
| CCAAAAGCTCCCATCTACGA+TGG | + | chr1_3:53402787-53402806 | Msa0125110:CDS | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | + | chr1_3:53403046-53403065 | Msa0125110:CDS | 50.0% | |
| !! | AATGTGGGTTGATTCCCTGC+TGG | + | chr1_3:53403328-53403347 | Msa0125110:CDS | 50.0% |
| GGAGTCTCAACAGCCAAATG+TGG | + | chr1_3:53403624-53403643 | Msa0125110:CDS | 50.0% | |
| GGTGGGCAGTTGTAACCAAA+GGG | + | chr1_3:53403758-53403777 | Msa0125110:CDS | 50.0% | |
| GGGTCTATTGTGACTTCCGT+TGG | + | chr1_3:53403778-53403797 | Msa0125110:CDS | 50.0% | |
| CAGTGGCCGAGTTTGACAAA+TGG | + | chr1_3:53403824-53403843 | Msa0125110:CDS | 50.0% | |
| TCCAGATTGTCACCGCACAA+TGG | + | chr1_3:53403981-53404000 | Msa0125110:CDS | 50.0% | |
| TCCATTGTGCGGTGACAATC+TGG | - | chr1_3:53403985-53404004 | None:intergenic | 50.0% | |
| ! | GTGTTGCCATAACGGGGATA+AGG | + | chr1_3:53404023-53404042 | Msa0125110:CDS | 50.0% |
| CCGAGCACTAAGTAGCTTCA+TGG | + | chr1_3:53404052-53404071 | Msa0125110:exon | 50.0% | |
| TCAGGGACATCAAGGAGGTC+TGG | + | chr1_3:53400671-53400690 | Msa0125110:intron | 55.0% | |
| GGTGAAGTGAAGCTAGCTGG+TGG | - | chr1_3:53400717-53400736 | None:intergenic | 55.0% | |
| AGCGGTGAAGTGAAGCTAGC+TGG | - | chr1_3:53400720-53400739 | None:intergenic | 55.0% | |
| ! | CAGATGTCATGCAAGGCACC+AGG | + | chr1_3:53401885-53401904 | Msa0125110:intron | 55.0% |
| TCCAGCTCTTGCACCAGCTT+TGG | + | chr1_3:53402232-53402251 | Msa0125110:CDS | 55.0% | |
| TCCAAAGCTGGTGCAAGAGC+TGG | - | chr1_3:53402236-53402255 | None:intergenic | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | + | chr1_3:53403049-53403068 | Msa0125110:CDS | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | + | chr1_3:53403054-53403073 | Msa0125110:CDS | 55.0% | |
| GGGTGGGCAGTTGTAACCAA+AGG | + | chr1_3:53403757-53403776 | Msa0125110:CDS | 55.0% | |
| TCAAGGAGGTCTGGACCACC+TGG | + | chr1_3:53400680-53400699 | Msa0125110:CDS | 60.0% | |
| ! | GTCATGCAAGGCACCAGGTG+AGG | + | chr1_3:53401890-53401909 | Msa0125110:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 53400311 | 53404311 | 53400311 | ID=Msa0125110;Name=Msa0125110 |
| chr1_3 | mRNA | 53400311 | 53404311 | 53400311 | ID=Msa0125110-mRNA-1;Parent=Msa0125110;Name=Msa0125110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.83|0.85|1|1|1|7|249|669 |
| chr1_3 | exon | 53400311 | 53400517 | 53400311 | ID=Msa0125110-mRNA-1:exon:16358;Parent=Msa0125110-mRNA-1 |
| chr1_3 | exon | 53400675 | 53400767 | 53400675 | ID=Msa0125110-mRNA-1:exon:16359;Parent=Msa0125110-mRNA-1 |
| chr1_3 | exon | 53401888 | 53402336 | 53401888 | ID=Msa0125110-mRNA-1:exon:16360;Parent=Msa0125110-mRNA-1 |
| chr1_3 | exon | 53402485 | 53402579 | 53402485 | ID=Msa0125110-mRNA-1:exon:16361;Parent=Msa0125110-mRNA-1 |
| chr1_3 | exon | 53402692 | 53402825 | 53402692 | ID=Msa0125110-mRNA-1:exon:16362;Parent=Msa0125110-mRNA-1 |
| chr1_3 | exon | 53402918 | 53403376 | 53402918 | ID=Msa0125110-mRNA-1:exon:16363;Parent=Msa0125110-mRNA-1 |
| chr1_3 | exon | 53403490 | 53404311 | 53403490 | ID=Msa0125110-mRNA-1:exon:16364;Parent=Msa0125110-mRNA-1 |
| chr1_3 | CDS | 53400311 | 53400517 | 53400311 | ID=Msa0125110-mRNA-1:cds;Parent=Msa0125110-mRNA-1 |
| chr1_3 | CDS | 53400675 | 53400767 | 53400675 | ID=Msa0125110-mRNA-1:cds;Parent=Msa0125110-mRNA-1 |
| chr1_3 | CDS | 53401888 | 53402336 | 53401888 | ID=Msa0125110-mRNA-1:cds;Parent=Msa0125110-mRNA-1 |
| chr1_3 | CDS | 53402485 | 53402579 | 53402485 | ID=Msa0125110-mRNA-1:cds;Parent=Msa0125110-mRNA-1 |
| chr1_3 | CDS | 53402692 | 53402825 | 53402692 | ID=Msa0125110-mRNA-1:cds;Parent=Msa0125110-mRNA-1 |
| chr1_3 | CDS | 53402918 | 53403376 | 53402918 | ID=Msa0125110-mRNA-1:cds;Parent=Msa0125110-mRNA-1 |
| chr1_3 | CDS | 53403490 | 53404062 | 53403490 | ID=Msa0125110-mRNA-1:cds;Parent=Msa0125110-mRNA-1 |
| chr1_3 | three_prime_UTR | 53404063 | 53404311 | 53404063 | ID=Msa0125110-mRNA-1:three_prime_utr;Parent=Msa0125110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
