Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077120 | XP_003590763.1 | 88.921 | 343 | 7 | 1 | 70 | 381 | 327 | 669 | 0.0 | 613 |
| Msa0077120 | XP_003590763.1 | 94.203 | 69 | 4 | 0 | 1 | 69 | 1 | 69 | 5.13e-30 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077120 | sp|Q9SS87|SEOB_ARATH | 28.534 | 382 | 194 | 14 | 70 | 373 | 349 | 729 | 5.05e-42 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077120 | E2FKJ5 | 88.921 | 343 | 7 | 1 | 70 | 381 | 327 | 669 | 0.0 | 613 |
| Msa0077120 | E2FKJ5 | 94.203 | 69 | 4 | 0 | 1 | 69 | 1 | 69 | 2.45e-30 | 133 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0077120 | 0.821167 | 4.662415e-53 | -8.615850e-47 |
| Msa0017510 | Msa0077120 | 0.811638 | 6.333312e-51 | -8.615850e-47 |
| Msa0029880 | Msa0077120 | 0.830290 | 3.191941e-55 | -8.615850e-47 |
| Msa0029890 | Msa0077120 | 0.815251 | 1.017361e-51 | -8.615850e-47 |
| Msa0029900 | Msa0077120 | 0.908553 | 1.507177e-81 | -8.615850e-47 |
| Msa0029910 | Msa0077120 | 0.926603 | 3.737793e-91 | -8.615850e-47 |
| Msa0040450 | Msa0077120 | 0.810562 | 1.083814e-50 | -8.615850e-47 |
| Msa0076250 | Msa0077120 | 0.802671 | 5.023605e-49 | -8.615850e-47 |
| Msa0077120 | Msa0077130 | 0.884877 | 1.316805e-71 | -8.615850e-47 |
| Msa0077120 | Msa0077140 | 0.810100 | 1.363215e-50 | -8.615850e-47 |
| Msa0077120 | Msa0100090 | 0.805578 | 1.247403e-49 | -8.615850e-47 |
| Msa0077120 | Msa0110970 | 0.801194 | 1.010351e-48 | -8.615850e-47 |
| Msa0077120 | Msa0125090 | 0.815192 | 1.048769e-51 | -8.615850e-47 |
| Msa0077120 | Msa0125110 | 0.835182 | 1.947921e-56 | -8.615850e-47 |
| Msa0077120 | Msa0125120 | 0.868086 | 8.480356e-66 | -8.615850e-47 |
| Msa0077120 | Msa0151350 | 0.800192 | 1.617220e-48 | -8.615850e-47 |
| Msa0077120 | Msa0157290 | 0.810793 | 9.661166e-51 | -8.615850e-47 |
| Msa0077120 | Msa0169860 | 0.853627 | 2.108461e-61 | -8.615850e-47 |
| Msa0077120 | Msa0169870 | 0.814747 | 1.316143e-51 | -8.615850e-47 |
| Msa0077120 | Msa0169920 | 0.938207 | 9.854358e-99 | -8.615850e-47 |
| Msa0077120 | Msa0170090 | 0.910473 | 1.801100e-82 | -8.615850e-47 |
| Msa0077120 | Msa0173990 | 0.817921 | 2.565728e-52 | -8.615850e-47 |
| Msa0077120 | Msa0191250 | 0.808064 | 3.721373e-50 | -8.615850e-47 |
| Msa0077120 | Msa0197660 | 0.823026 | 1.728520e-53 | -8.615850e-47 |
| Msa0077120 | Msa0220420 | 0.847685 | 9.891703e-60 | -8.615850e-47 |
| Msa0077120 | Msa0221290 | 0.818216 | 2.200660e-52 | -8.615850e-47 |
| Msa0077120 | Msa0239800 | 0.822671 | 2.090600e-53 | -8.615850e-47 |
| Msa0077120 | Msa0243100 | 0.804417 | 2.181528e-49 | -8.615850e-47 |
| Msa0077120 | Msa0277820 | 0.800174 | 1.631325e-48 | -8.615850e-47 |
| Msa0077120 | Msa0299550 | 0.828249 | 9.985806e-55 | -8.615850e-47 |
| Msa0077120 | Msa0317510 | 0.832302 | 1.021400e-55 | -8.615850e-47 |
| Msa0077120 | Msa0323610 | 0.827403 | 1.594961e-54 | -8.615850e-47 |
| Msa0077120 | Msa0333920 | 0.811569 | 6.556780e-51 | -8.615850e-47 |
| Msa0077120 | Msa0334040 | 0.810588 | 1.069749e-50 | -8.615850e-47 |
| Msa0077120 | Msa0385390 | 0.825763 | 3.925714e-54 | -8.615850e-47 |
| Msa0077120 | Msa0452920 | 0.803788 | 2.949773e-49 | -8.615850e-47 |
| Msa0077120 | Msa0483650 | 0.810070 | 1.383632e-50 | -8.615850e-47 |
| Msa0077120 | Msa0484780 | 0.829836 | 4.118995e-55 | -8.615850e-47 |
| Msa0077120 | Msa0523460 | 0.810252 | 1.264112e-50 | -8.615850e-47 |
| Msa0077120 | Msa0626220 | 0.801068 | 1.071803e-48 | -8.615850e-47 |
| Msa0077120 | Msa0657970 | 0.803359 | 3.619268e-49 | -8.615850e-47 |
| Msa0077120 | Msa0682550 | 0.820571 | 6.394098e-53 | -8.615850e-47 |
| Msa0077120 | Msa0727710 | 0.814951 | 1.186124e-51 | -8.615850e-47 |
| Msa0077120 | Msa0829620 | 0.804497 | 2.099695e-49 | -8.615850e-47 |
| Msa0077120 | Msa0867890 | 0.811292 | 7.529091e-51 | -8.615850e-47 |
| Msa0077120 | Msa0880140 | 0.810863 | 9.329647e-51 | -8.615850e-47 |
| Msa0077120 | Msa0941820 | 0.802942 | 4.414787e-49 | -8.615850e-47 |
| Msa0077120 | Msa0964840 | 0.803184 | 3.934010e-49 | -8.615850e-47 |
| Msa0077120 | Msa1079590 | 0.801527 | 8.635651e-49 | -8.615850e-47 |
| Msa0077120 | Msa1082500 | 0.835595 | 1.531495e-56 | -8.615850e-47 |
| Msa0077120 | Msa1169990 | 0.815271 | 1.007209e-51 | -8.615850e-47 |
| Msa0077120 | Msa1179280 | 0.817832 | 2.687772e-52 | -8.615850e-47 |
| Msa0077120 | Msa1214880 | 0.804258 | 2.354775e-49 | -8.615850e-47 |
| Msa0077120 | Msa1214890 | 0.812396 | 4.330104e-51 | -8.615850e-47 |
| Msa0077120 | Msa1228190 | 0.802882 | 4.543058e-49 | -8.615850e-47 |
| Msa0077120 | Msa1233560 | 0.810799 | 9.632195e-51 | -8.615850e-47 |
| Msa0077120 | Msa1260610 | 0.829409 | 5.230360e-55 | -8.615850e-47 |
| Msa0077120 | Msa1271260 | 0.811206 | 7.861223e-51 | -8.615850e-47 |
| Msa0077120 | Msa1275820 | 0.802502 | 5.442203e-49 | -8.615850e-47 |
| Msa0077120 | Msa1305510 | 0.804930 | 1.705147e-49 | -8.615850e-47 |
| Msa0077120 | Msa1313970 | 0.814923 | 1.203253e-51 | -8.615850e-47 |
| Msa0077120 | Msa1331910 | 0.806014 | 1.010201e-49 | -8.615850e-47 |
| Msa0077120 | Msa1452120 | 0.813649 | 2.299768e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077120 | MtrunA17_Chr1g0186851 | 88.921 | 343 | 7 | 1 | 70 | 381 | 327 | 669 | 0.0 | 613 |
| Msa0077120 | MtrunA17_Chr1g0186851 | 94.203 | 69 | 4 | 0 | 1 | 69 | 1 | 69 | 4.72e-34 | 133 |
| Msa0077120 | MtrunA17_Chr1g0186861 | 73.512 | 336 | 58 | 1 | 70 | 374 | 329 | 664 | 1.19e-175 | 504 |
| Msa0077120 | MtrunA17_Chr1g0186861 | 79.710 | 69 | 14 | 0 | 1 | 69 | 1 | 69 | 4.51e-27 | 113 |
| Msa0077120 | MtrunA17_Chr1g0186911 | 73.512 | 336 | 58 | 1 | 70 | 374 | 227 | 562 | 2.17e-175 | 500 |
| Msa0077120 | MtrunA17_Chr1g0187041 | 70.674 | 341 | 67 | 2 | 70 | 377 | 327 | 667 | 1.64e-167 | 484 |
| Msa0077120 | MtrunA17_Chr1g0187041 | 59.155 | 71 | 29 | 0 | 1 | 71 | 1 | 71 | 3.09e-18 | 86.7 |
| Msa0077120 | MtrunA17_Chr1g0186841 | 53.372 | 341 | 125 | 4 | 74 | 381 | 332 | 671 | 3.27e-126 | 378 |
| Msa0077120 | MtrunA17_Chr1g0186841 | 55.385 | 65 | 26 | 1 | 5 | 69 | 9 | 70 | 1.25e-14 | 75.5 |
| Msa0077120 | MtrunA17_Chr7g0226571 | 28.046 | 435 | 227 | 12 | 27 | 375 | 279 | 713 | 3.02e-54 | 190 |
| Msa0077120 | MtrunA17_Chr1g0165791 | 29.201 | 363 | 209 | 9 | 66 | 380 | 323 | 685 | 7.03e-47 | 170 |
| Msa0077120 | MtrunA17_Chr8g0381301 | 29.380 | 371 | 193 | 13 | 69 | 372 | 335 | 703 | 1.12e-43 | 160 |
| Msa0077120 | MtrunA17_Chr1g0186991 | 30.000 | 360 | 192 | 11 | 71 | 375 | 315 | 669 | 1.23e-41 | 155 |
| Msa0077120 | MtrunA17_Chr1g0187001 | 30.471 | 361 | 198 | 11 | 71 | 381 | 287 | 644 | 6.56e-41 | 152 |
| Msa0077120 | MtrunA17_Chr3g0116601 | 31.421 | 366 | 188 | 13 | 68 | 371 | 340 | 704 | 8.63e-41 | 152 |
| Msa0077120 | MtrunA17_Chr1g0186981 | 28.212 | 358 | 206 | 9 | 72 | 378 | 311 | 668 | 1.59e-39 | 149 |
| Msa0077120 | MtrunA17_Chr1g0186901 | 83.333 | 66 | 11 | 0 | 1 | 66 | 1 | 66 | 5.37e-29 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077120 | AT3G01680.1 | 28.534 | 382 | 194 | 14 | 70 | 373 | 349 | 729 | 5.14e-43 | 159 |
| Msa0077120 | AT3G01670.2 | 24.665 | 373 | 208 | 9 | 69 | 371 | 475 | 844 | 2.45e-24 | 105 |
| Msa0077120 | AT3G01670.1 | 24.665 | 373 | 208 | 9 | 69 | 371 | 451 | 820 | 2.88e-24 | 105 |
| Msa0077120 | AT1G67790.1 | 22.754 | 334 | 186 | 11 | 96 | 369 | 343 | 664 | 2.82e-17 | 84.0 |
Find 83 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTATATGATCATAAAT+TGG | 0.139133 | 1_2:+53580488 | None:intergenic |
| CATTGATTCTTCTTTGGATT+TGG | 0.201689 | 1_2:+53580200 | None:intergenic |
| ACATTGATATAAAGATTAAA+TGG | 0.204759 | 1_2:-53580140 | Msa0077120:CDS |
| GAAAAGTCTGTCATCATTTA+TGG | 0.229545 | 1_2:-53579993 | Msa0077120:CDS |
| CAAATGTGGTTAACAACTTT+TGG | 0.237806 | 1_2:-53579851 | Msa0077120:CDS |
| TTGTGTCATTGATTCTTCTT+TGG | 0.239627 | 1_2:+53580194 | None:intergenic |
| GAAAGATGTGGCAATCAATA+AGG | 0.284276 | 1_2:-53579643 | Msa0077120:CDS |
| ATTCCATATGATTCAAGTTT+GGG | 0.287868 | 1_2:-53580244 | Msa0077120:CDS |
| CAAAAGTTGTTAACCACATT+TGG | 0.289864 | 1_2:+53579852 | None:intergenic |
| TCAAAATTGAGATGTCTTCT+TGG | 0.293163 | 1_2:+53580513 | None:intergenic |
| CATTCCATATGATTCAAGTT+TGG | 0.299165 | 1_2:-53580245 | Msa0077120:CDS |
| GCTCATCAGACATGGTTAAA+TGG | 0.320274 | 1_2:+53583019 | None:intergenic |
| AGAAGTCACAATAGACCTTT+TGG | 0.332715 | 1_2:+53579716 | None:intergenic |
| CATGTCTGATGAGCACATTT+TGG | 0.345477 | 1_2:-53583010 | Msa0077120:CDS |
| CTCCCCAAACTTGAATCATA+TGG | 0.346723 | 1_2:+53580241 | None:intergenic |
| ATTCAAGTTTGGGGAGTAAA+GGG | 0.363993 | 1_2:-53580234 | Msa0077120:CDS |
| CATTGGCCTTATCGCCGTTA+TGG | 0.370683 | 1_2:+53579460 | None:intergenic |
| TCTTCTTTGGATTTGGAGTA+AGG | 0.371960 | 1_2:+53580207 | None:intergenic |
| CTAGAGATTCCCAATGTTGC+TGG | 0.374693 | 1_2:-53579555 | Msa0077120:CDS |
| GTTGAGACTCCAAGCAAAAT+AGG | 0.374745 | 1_2:+53579877 | None:intergenic |
| TCTTTATATGATCATAAATT+GGG | 0.380456 | 1_2:+53580489 | None:intergenic |
| TCCATTGTGCAGTGACAATC+TGG | 0.381433 | 1_2:+53579507 | None:intergenic |
| TATGATCATATAAAGAAAAC+TGG | 0.388913 | 1_2:-53580482 | Msa0077120:CDS |
| CAGACATGGTTAAATGGTTA+TGG | 0.390652 | 1_2:+53583025 | None:intergenic |
| CATCAAATTTAGTGTCACTA+TGG | 0.409076 | 1_2:+53582965 | None:intergenic |
| TAAGGCCAATGGCGAGCATT+AGG | 0.411115 | 1_2:-53579448 | None:intergenic |
| CTTTCTTACAAGAATGAGAC+TGG | 0.413501 | 1_2:-53579753 | Msa0077120:CDS |
| TCTGGACACTCGATAAAATC+TGG | 0.418484 | 1_2:+53579525 | None:intergenic |
| AACAAACACTGTTACACAAC+AGG | 0.447051 | 1_2:-53579787 | Msa0077120:CDS |
| GATTCAAGTTTGGGGAGTAA+AGG | 0.451419 | 1_2:-53580235 | Msa0077120:CDS |
| GTTCTTGTTCATTTCAACTC+TGG | 0.451654 | 1_2:-53580543 | Msa0077120:CDS |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1_2:+53580434 | None:intergenic |
| CTTTGAAGTCAAAGATGCCT+TGG | 0.456421 | 1_2:-53580388 | Msa0077120:intron |
| CAACATGGGTTGAACGTGTA+AGG | 0.459385 | 1_2:+53582911 | None:intergenic |
| TAATAGCGGCATCATTTGCT+AGG | 0.464096 | 1_2:+53579922 | None:intergenic |
| ATTGTGACTTCTGTTGGTCA+TGG | 0.465244 | 1_2:-53579705 | Msa0077120:CDS |
| CATTGATATAAAGATTAAAT+GGG | 0.479358 | 1_2:-53580139 | Msa0077120:intron |
| TTATATCAATGTCAGCCAGC+AGG | 0.486824 | 1_2:+53580151 | None:intergenic |
| TTGTGACTTCTGTTGGTCAT+GGG | 0.494189 | 1_2:-53579704 | Msa0077120:CDS |
| AAAGATGTGGCAATCAATAA+GGG | 0.500646 | 1_2:-53579642 | Msa0077120:CDS |
| AGGTCTATTGTGACTTCTGT+TGG | 0.501046 | 1_2:-53579711 | Msa0077120:CDS |
| AGCTACAAGTGTTGCCATAA+CGG | 0.504999 | 1_2:-53579474 | Msa0077120:CDS |
| ATCTTTCCATTTGTCAAACT+CGG | 0.509793 | 1_2:+53579659 | None:intergenic |
| GTGTTGCCATAACGGCGATA+AGG | 0.515751 | 1_2:-53579466 | Msa0077120:CDS |
| CAATGACACAAGAATTAATG+TGG | 0.525892 | 1_2:-53580182 | Msa0077120:CDS |
| CAGCAACATTGGGAATCTCT+AGG | 0.526665 | 1_2:+53579556 | None:intergenic |
| CAGTGTCCGAGTTTGACAAA+TGG | 0.528291 | 1_2:-53579665 | Msa0077120:CDS |
| ATCATTCCATTCCTCCACAA+TGG | 0.531780 | 1_2:+53580433 | None:intergenic |
| AATGTGGGTTGATTCCCTGC+TGG | 0.532892 | 1_2:-53580166 | Msa0077120:CDS |
| CAACAATTCACTAAGTATGC+TGG | 0.534554 | 1_2:-53579948 | Msa0077120:CDS |
| GGTGGGCAATTGTAACCAAA+AGG | 0.537341 | 1_2:-53579731 | Msa0077120:CDS |
| ATGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1_2:-53579974 | Msa0077120:CDS |
| CATTTATGGAGGTAAAGATA+AGG | 0.555548 | 1_2:-53579979 | Msa0077120:CDS |
| AGCTACCTAATGCTCGCCAT+TGG | 0.558710 | 1_2:+53579443 | None:intergenic |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1_2:-53580439 | Msa0077120:CDS |
| CTTCTTTGGATTTGGAGTAA+GGG | 0.567493 | 1_2:+53580208 | None:intergenic |
| TATATCAATGTCAGCCAGCA+GGG | 0.567784 | 1_2:+53580152 | None:intergenic |
| AATAGCGGCATCATTTGCTA+GGG | 0.575747 | 1_2:+53579923 | None:intergenic |
| CAAAATGTGCTCATCAGACA+TGG | 0.576873 | 1_2:+53583011 | None:intergenic |
| TGTGAATAAGTGATCGCACT+AGG | 0.578637 | 1_2:+53583070 | None:intergenic |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1_2:+53580456 | None:intergenic |
| TGATGTAGAATCTTTCCTTG+TGG | 0.585970 | 1_2:+53580273 | None:intergenic |
| TTTCTTGTGTTGAGTCCACA+AGG | 0.590992 | 1_2:-53580288 | Msa0077120:intron |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1_2:-53580447 | Msa0077120:CDS |
| GAAGCCAACACAAGATTGTG+TGG | 0.598027 | 1_2:-53580460 | Msa0077120:CDS |
| GTGCGATCACTTATTCACAT+TGG | 0.606075 | 1_2:-53583066 | Msa0077120:CDS |
| TTACAAGAATGAGACTGGGT+GGG | 0.613509 | 1_2:-53579748 | Msa0077120:CDS |
| TTCCATATGATTCAAGTTTG+GGG | 0.613604 | 1_2:-53580243 | Msa0077120:CDS |
| GCAGAACGTTATCAACAACA+TGG | 0.615403 | 1_2:+53582896 | None:intergenic |
| AATGACACAAGAATTAATGT+GGG | 0.631951 | 1_2:-53580181 | Msa0077120:CDS |
| TTTCTTACAAGAATGAGACT+GGG | 0.638297 | 1_2:-53579752 | Msa0077120:CDS |
| TCCAGATTGTCACTGCACAA+TGG | 0.642851 | 1_2:-53579508 | Msa0077120:CDS |
| CATAACGGCGATAAGGCCAA+TGG | 0.644220 | 1_2:-53579459 | Msa0077120:CDS |
| CTTACAAGAATGAGACTGGG+TGG | 0.646290 | 1_2:-53579749 | Msa0077120:CDS |
| GTTTGACAAATGGAAAGATG+TGG | 0.652145 | 1_2:-53579655 | Msa0077120:CDS |
| GGAGTCTCAACAGCCAAATG+TGG | 0.652213 | 1_2:-53579865 | Msa0077120:CDS |
| AAGTCTGTCATCATTTATGG+AGG | 0.656284 | 1_2:-53579990 | Msa0077120:CDS |
| AGTCTTCGTCTGCTTAATAG+CGG | 0.660331 | 1_2:+53579908 | None:intergenic |
| TAGGTGAGAGCAAATATGAA+CGG | 0.669677 | 1_2:+53579575 | None:intergenic |
| AAGCCAACACAAGATTGTGT+GGG | 0.670390 | 1_2:-53580459 | Msa0077120:CDS |
| CAGAACGTTATCAACAACAT+GGG | 0.681953 | 1_2:+53582897 | None:intergenic |
| ATTTAGAGAACATCATCACA+AGG | 0.686779 | 1_2:-53579607 | Msa0077120:CDS |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1_2:-53580444 | Msa0077120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATGAAGAAAAAAAAA+TGG | + | chr1_2:53579684-53579703 | None:intergenic | 10.0% |
| !!! | ATATGTTTTTATAATTAAAC+AGG | - | chr1_2:53581930-53581949 | Msa0077120:intron | 10.0% |
| !! | AGTTATTTGTCTTTAATTAT+AGG | + | chr1_2:53580624-53580643 | None:intergenic | 15.0% |
| !!! | TTGTTTCTTATTTTAATTGT+GGG | + | chr1_2:53580936-53580955 | None:intergenic | 15.0% |
| !!! | TTTGTTTCTTATTTTAATTG+TGG | + | chr1_2:53580937-53580956 | None:intergenic | 15.0% |
| !! | ATATGTCATTGATAAAAAAA+AGG | + | chr1_2:53581040-53581059 | None:intergenic | 15.0% |
| !!! | TACTATTTTCAAATTTCTTT+GGG | + | chr1_2:53581179-53581198 | None:intergenic | 15.0% |
| !! | AAAATTTGCAATACATTTAT+AGG | - | chr1_2:53581295-53581314 | Msa0077120:intron | 15.0% |
| !! | AAATTTGCAATACATTTATA+GGG | - | chr1_2:53581296-53581315 | Msa0077120:intron | 15.0% |
| !! | ATAAGAAATTGCAAAAAATT+TGG | - | chr1_2:53581410-53581429 | Msa0077120:intron | 15.0% |
| !! | TAAGAAATTGCAAAAAATTT+GGG | - | chr1_2:53581411-53581430 | Msa0077120:intron | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | + | chr1_2:53581628-53581647 | None:intergenic | 15.0% |
| !! | TAAATAATTTCCTTCAATAT+GGG | + | chr1_2:53581692-53581711 | None:intergenic | 15.0% |
| !! | TTAAATAATTTCCTTCAATA+TGG | + | chr1_2:53581693-53581712 | None:intergenic | 15.0% |
| !!! | ATATCTTAATTTAGTTTCAT+TGG | - | chr1_2:53581868-53581887 | Msa0077120:intron | 15.0% |
| !! | TCTTTATATGATCATAAATT+GGG | + | chr1_2:53582041-53582060 | None:intergenic | 15.0% |
| !! | TTCTTTATATGATCATAAAT+TGG | + | chr1_2:53582042-53582061 | None:intergenic | 15.0% |
| !! | ACATTGATATAAAGATTAAA+TGG | - | chr1_2:53582387-53582406 | Msa0077120:intron | 15.0% |
| !! | CATTGATATAAAGATTAAAT+GGG | - | chr1_2:53582388-53582407 | Msa0077120:intron | 15.0% |
| !!! | ATAACTTGTTTACAATTATC+AGG | - | chr1_2:53580638-53580657 | Msa0077120:intron | 20.0% |
| !!! | TAACTTGTTTACAATTATCA+GGG | - | chr1_2:53580639-53580658 | Msa0077120:intron | 20.0% |
| !!! | CTACTATTTTCAAATTTCTT+TGG | + | chr1_2:53581180-53581199 | None:intergenic | 20.0% |
| !! | AAGAAATTTGAAAATAGTAG+TGG | - | chr1_2:53581180-53581199 | Msa0077120:intron | 20.0% |
| !! | AATTTGCAATACATTTATAG+GGG | - | chr1_2:53581297-53581316 | Msa0077120:intron | 20.0% |
| !! | TATATAAACCCCTATAAATT+GGG | + | chr1_2:53581370-53581389 | None:intergenic | 20.0% |
| !! | TTATATAAACCCCTATAAAT+TGG | + | chr1_2:53581371-53581390 | None:intergenic | 20.0% |
| !! | GGTTTATATAAGAAATTCAA+GGG | - | chr1_2:53581380-53581399 | Msa0077120:intron | 20.0% |
| !! | GTTTATATAAGAAATTCAAG+GGG | - | chr1_2:53581381-53581400 | Msa0077120:intron | 20.0% |
| !! | CTTCATTTACTAAAAGTAAA+TGG | + | chr1_2:53581508-53581527 | None:intergenic | 20.0% |
| !!! | TTTACTTTTAGTAAATGAAG+AGG | - | chr1_2:53581508-53581527 | Msa0077120:intron | 20.0% |
| !! | TTGAAATTAAGGAGTTAAAA+GGG | + | chr1_2:53581554-53581573 | None:intergenic | 20.0% |
| !!! | TTTTAACTCCTTAATTTCAA+GGG | - | chr1_2:53581554-53581573 | Msa0077120:intron | 20.0% |
| !! | ATATTTAACCCTTGAAATTA+AGG | + | chr1_2:53581565-53581584 | None:intergenic | 20.0% |
| !!! | TATAAGGTTGCAATTTTATA+GGG | + | chr1_2:53581597-53581616 | None:intergenic | 20.0% |
| !!! | TTATAAGGTTGCAATTTTAT+AGG | + | chr1_2:53581598-53581617 | None:intergenic | 20.0% |
| !! | TTTATGTTTAAGTATGTACA+AGG | - | chr1_2:53581892-53581911 | Msa0077120:intron | 20.0% |
| !! | TATGATCATATAAAGAAAAC+TGG | - | chr1_2:53582045-53582064 | Msa0077120:intron | 20.0% |
| !! | TATGTACTTTATACCTTAAT+GGG | + | chr1_2:53582186-53582205 | None:intergenic | 20.0% |
| !! | TTATGTACTTTATACCTTAA+TGG | + | chr1_2:53582187-53582206 | None:intergenic | 20.0% |
| !! | TTAAGGTATAAAGTACATAA+AGG | - | chr1_2:53582187-53582206 | Msa0077120:intron | 20.0% |
| !! | TTGTAATTTCATGTTATCTT+TGG | - | chr1_2:53582496-53582515 | Msa0077120:intron | 20.0% |
| !!! | AATCTTTTTTCAACATTGCT+GGG | - | chr1_2:53579588-53579607 | Msa0077120:CDS | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | - | chr1_2:53580264-53580283 | Msa0077120:CDS | 25.0% |
| !! | TTTTCGAATGATTTCTCTAA+TGG | + | chr1_2:53580399-53580418 | None:intergenic | 25.0% |
| ! | AATCATTCGAAAAGATTTAG+AGG | - | chr1_2:53580406-53580425 | Msa0077120:CDS | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | + | chr1_2:53580446-53580465 | None:intergenic | 25.0% |
| !! | CCAACTTTTAATATATCTCT+CGG | - | chr1_2:53580578-53580597 | Msa0077120:CDS | 25.0% |
| ! | AAAGAAATTGCCCAATTTAT+AGG | - | chr1_2:53581357-53581376 | Msa0077120:intron | 25.0% |
| ! | AAGAAATTGCCCAATTTATA+GGG | - | chr1_2:53581358-53581377 | Msa0077120:intron | 25.0% |
| ! | GGGTTTATATAAGAAATTCA+AGG | - | chr1_2:53581379-53581398 | Msa0077120:intron | 25.0% |
| ! | CTTGAAATTAAGGAGTTAAA+AGG | + | chr1_2:53581555-53581574 | None:intergenic | 25.0% |
| !!! | CTTTTAACTCCTTAATTTCA+AGG | - | chr1_2:53581553-53581572 | Msa0077120:intron | 25.0% |
| !! | TCAAGGGTTAAATATGTTTT+TGG | - | chr1_2:53581570-53581589 | Msa0077120:intron | 25.0% |
| ! | AAGTAAGGACTAAACTTATA+AGG | + | chr1_2:53581613-53581632 | None:intergenic | 25.0% |
| !!! | CTTTTTTAATCCCTACAAAA+GGG | - | chr1_2:53581644-53581663 | Msa0077120:intron | 25.0% |
| !! | ATTCCATATGATTCAAGTTT+GGG | - | chr1_2:53582283-53582302 | Msa0077120:intron | 25.0% |
| ! | AATGACACAAGAATTAATGT+GGG | - | chr1_2:53582346-53582365 | Msa0077120:intron | 25.0% |
| !! | TTATCTTTGGAAATTGAAGA+AGG | - | chr1_2:53582509-53582528 | Msa0077120:intron | 25.0% |
| ! | CATCAAATTTAGTGTCACTA+TGG | + | chr1_2:53579565-53579584 | None:intergenic | 30.0% |
| !!! | GAATCTTTTTTCAACATTGC+TGG | - | chr1_2:53579587-53579606 | Msa0077120:CDS | 30.0% |
| ATATCTAAACCGTGTAACTT+GGG | + | chr1_2:53579923-53579942 | None:intergenic | 30.0% | |
| TTACACGGTTTAGATATCTT+GGG | - | chr1_2:53579926-53579945 | Msa0077120:CDS | 30.0% | |
| !!! | TTCTCCGTCATTTTTTACTA+TGG | + | chr1_2:53579953-53579972 | None:intergenic | 30.0% |
| ! | TCTACCAACTTTTCTACTAT+AGG | + | chr1_2:53580260-53580279 | None:intergenic | 30.0% |
| TCTTCTTACAACAACATCTA+CGG | + | chr1_2:53580321-53580340 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | - | chr1_2:53580331-53580350 | Msa0077120:intron | 30.0% | |
| ATTTCTCTAATGGTTCTCTT+AGG | + | chr1_2:53580389-53580408 | None:intergenic | 30.0% | |
| CCGAGAGATATATTAAAAGT+TGG | + | chr1_2:53580581-53580600 | None:intergenic | 30.0% | |
| ATTTGCTTCAAAGTACACAA+CGG | + | chr1_2:53580723-53580742 | None:intergenic | 30.0% | |
| ! | TTTGAAGCAAATTAACTCTG+AGG | - | chr1_2:53580731-53580750 | Msa0077120:intron | 30.0% |
| TAAGTAAATGACTCTCCATT+AGG | + | chr1_2:53580859-53580878 | None:intergenic | 30.0% | |
| ! | ATTGTTATTAGAGAGAGCAA+GGG | + | chr1_2:53580908-53580927 | None:intergenic | 30.0% |
| ! | AATTGTTATTAGAGAGAGCA+AGG | + | chr1_2:53580909-53580928 | None:intergenic | 30.0% |
| TTGCTCTCTCTAATAACAAT+TGG | - | chr1_2:53580908-53580927 | Msa0077120:intron | 30.0% | |
| ATCTCTCCAAATAGAAGAAA+TGG | + | chr1_2:53581151-53581170 | None:intergenic | 30.0% | |
| ! | GATACAAAAAAGCATGTAGT+GGG | + | chr1_2:53581225-53581244 | None:intergenic | 30.0% |
| ! | AGATACAAAAAAGCATGTAG+TGG | + | chr1_2:53581226-53581245 | None:intergenic | 30.0% |
| !!! | ATTGCAAATTTTTTTTCGCC+CGG | + | chr1_2:53581287-53581306 | None:intergenic | 30.0% |
| AGAAATTGCCCAATTTATAG+GGG | - | chr1_2:53581359-53581378 | Msa0077120:intron | 30.0% | |
| AAATTGCAAAAAATTTGGGC+CGG | - | chr1_2:53581415-53581434 | Msa0077120:intron | 30.0% | |
| !!! | GCTTTTTTAATCCCTACAAA+AGG | - | chr1_2:53581643-53581662 | Msa0077120:intron | 30.0% |
| ! | GTATTTTCTTCCCATATTGA+AGG | - | chr1_2:53581679-53581698 | Msa0077120:intron | 30.0% |
| !! | GGAAATTATGGAAGTGTTTA+AGG | - | chr1_2:53581770-53581789 | Msa0077120:intron | 30.0% |
| !!! | TGTTTAAGGTGTTGATTTTC+TGG | - | chr1_2:53581784-53581803 | Msa0077120:intron | 30.0% |
| TGTTTAAGTATGTACAAGGT+TGG | - | chr1_2:53581896-53581915 | Msa0077120:intron | 30.0% | |
| TCAAAATTGAGATGTCTTCT+TGG | + | chr1_2:53582017-53582036 | None:intergenic | 30.0% | |
| AGGTATAAAGTACATAAAGG+AGG | - | chr1_2:53582190-53582209 | Msa0077120:intron | 30.0% | |
| ! | CATTCCATATGATTCAAGTT+TGG | - | chr1_2:53582282-53582301 | Msa0077120:intron | 30.0% |
| ! | TTCCATATGATTCAAGTTTG+GGG | - | chr1_2:53582284-53582303 | Msa0077120:intron | 30.0% |
| !! | CATTGATTCTTCTTTGGATT+TGG | + | chr1_2:53582330-53582349 | None:intergenic | 30.0% |
| !! | TTGTGTCATTGATTCTTCTT+TGG | + | chr1_2:53582336-53582355 | None:intergenic | 30.0% |
| CAATGACACAAGAATTAATG+TGG | - | chr1_2:53582345-53582364 | Msa0077120:intron | 30.0% | |
| AGATTAAATGGGTACGTATT+CGG | - | chr1_2:53582399-53582418 | Msa0077120:intron | 30.0% | |
| GAAAAGTCTGTCATCATTTA+TGG | - | chr1_2:53582534-53582553 | Msa0077120:intron | 30.0% | |
| CATTTATGGAGGTAAAGATA+AGG | - | chr1_2:53582548-53582567 | Msa0077120:intron | 30.0% | |
| ! | TTCAATTGACCTATTTTGCT+TGG | - | chr1_2:53582641-53582660 | Msa0077120:intron | 30.0% |
| CAAAAGTTGTTAACCACATT+TGG | + | chr1_2:53582678-53582697 | None:intergenic | 30.0% | |
| ! | CAAATGTGGTTAACAACTTT+TGG | - | chr1_2:53582676-53582695 | Msa0077120:intron | 30.0% |
| !! | GGTTAACAACTTTTGGAAAA+AGG | - | chr1_2:53582683-53582702 | Msa0077120:intron | 30.0% |
| TTTCTTACAAGAATGAGACT+GGG | - | chr1_2:53582775-53582794 | Msa0077120:intron | 30.0% | |
| ATCTTTCCATTTGTCAAACT+CGG | + | chr1_2:53582871-53582890 | None:intergenic | 30.0% | |
| AAAGATGTGGCAATCAATAA+GGG | - | chr1_2:53582885-53582904 | Msa0077120:intron | 30.0% | |
| ATTTAGAGAACATCATCACA+AGG | - | chr1_2:53582920-53582939 | Msa0077120:CDS | 30.0% | |
| CAGACATGGTTAAATGGTTA+TGG | + | chr1_2:53579505-53579524 | None:intergenic | 35.0% | |
| CAGAACGTTATCAACAACAT+GGG | + | chr1_2:53579633-53579652 | None:intergenic | 35.0% | |
| TGGAATGTAACTTCAGCAAA+AGG | - | chr1_2:53579851-53579870 | Msa0077120:CDS | 35.0% | |
| ATATCATACCCCAAGTTACA+CGG | - | chr1_2:53579911-53579930 | Msa0077120:CDS | 35.0% | |
| TATCTAAACCGTGTAACTTG+GGG | + | chr1_2:53579922-53579941 | None:intergenic | 35.0% | |
| GATATCTAAACCGTGTAACT+TGG | + | chr1_2:53579924-53579943 | None:intergenic | 35.0% | |
| GTTACACGGTTTAGATATCT+TGG | - | chr1_2:53579925-53579944 | Msa0077120:CDS | 35.0% | |
| GGGTCCATAGTAAAAAATGA+CGG | - | chr1_2:53579946-53579965 | Msa0077120:CDS | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | - | chr1_2:53580051-53580070 | Msa0077120:intron | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | + | chr1_2:53580060-53580079 | None:intergenic | 35.0% | |
| AGACTAGACATGATAGGATT+AGG | - | chr1_2:53580199-53580218 | Msa0077120:CDS | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | - | chr1_2:53580253-53580272 | Msa0077120:CDS | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | - | chr1_2:53580273-53580292 | Msa0077120:CDS | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | - | chr1_2:53580278-53580297 | Msa0077120:intron | 35.0% | |
| CTTCTTACAACAACATCTAC+GGG | + | chr1_2:53580320-53580339 | None:intergenic | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | - | chr1_2:53580334-53580353 | Msa0077120:intron | 35.0% | |
| AGATTTAGAGGTCAATGAGT+TGG | - | chr1_2:53580418-53580437 | Msa0077120:CDS | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr1_2:53580430-53580449 | Msa0077120:CDS | 35.0% |
| ! | TGGTTTTTGATAGAACACTC+TGG | - | chr1_2:53580450-53580469 | Msa0077120:CDS | 35.0% |
| TACAATTATCAGGGACATCA+AGG | - | chr1_2:53580648-53580667 | Msa0077120:intron | 35.0% | |
| GGAGAGACTAATAAATGTAG+AGG | + | chr1_2:53581130-53581149 | None:intergenic | 35.0% | |
| GTCTCTCCATTTCTTCTATT+TGG | - | chr1_2:53581142-53581161 | Msa0077120:intron | 35.0% | |
| !!! | TTGCAAATTTTTTTTCGCCC+GGG | + | chr1_2:53581286-53581305 | None:intergenic | 35.0% |
| !!! | ATGTCATTTTGTGAGAGACA+GGG | + | chr1_2:53581482-53581501 | None:intergenic | 35.0% |
| !!! | AATGTCATTTTGTGAGAGAC+AGG | + | chr1_2:53581483-53581502 | None:intergenic | 35.0% |
| ! | CGATATTTCTCCCTTTTGTA+GGG | + | chr1_2:53581657-53581676 | None:intergenic | 35.0% |
| ! | TCGATATTTCTCCCTTTTGT+AGG | + | chr1_2:53581658-53581677 | None:intergenic | 35.0% |
| CAGAGTATAACAAGTTACTC+AGG | - | chr1_2:53581727-53581746 | Msa0077120:intron | 35.0% | |
| AACACTTCCATAATTTCCGT+CGG | + | chr1_2:53581768-53581787 | None:intergenic | 35.0% | |
| TTAGTCGAACCATCATAGAT+GGG | + | chr1_2:53581828-53581847 | None:intergenic | 35.0% | |
| TTTAGTCGAACCATCATAGA+TGG | + | chr1_2:53581829-53581848 | None:intergenic | 35.0% | |
| !! | TATCGAAGTGCTGAAAAAGA+AGG | - | chr1_2:53581957-53581976 | Msa0077120:intron | 35.0% |
| GTTCTTGTTCATTTCAACTC+TGG | - | chr1_2:53581984-53582003 | Msa0077120:intron | 35.0% | |
| AAGTGATGCAAAACATACCA+AGG | + | chr1_2:53582159-53582178 | None:intergenic | 35.0% | |
| GGACTCAACACAAGAAATAA+AGG | + | chr1_2:53582236-53582255 | None:intergenic | 35.0% | |
| TGATGTAGAATCTTTCCTTG+TGG | + | chr1_2:53582257-53582276 | None:intergenic | 35.0% | |
| ! | ATTCAAGTTTGGGGAGTAAA+GGG | - | chr1_2:53582293-53582312 | Msa0077120:intron | 35.0% |
| ! | CTTCTTTGGATTTGGAGTAA+GGG | + | chr1_2:53582322-53582341 | None:intergenic | 35.0% |
| ! | TCTTCTTTGGATTTGGAGTA+AGG | + | chr1_2:53582323-53582342 | None:intergenic | 35.0% |
| ! | TCTTTGGAAATTGAAGAAGG+AGG | - | chr1_2:53582512-53582531 | Msa0077120:intron | 35.0% |
| AAGTCTGTCATCATTTATGG+AGG | - | chr1_2:53582537-53582556 | Msa0077120:intron | 35.0% | |
| ATGGAGGTAAAGATAAGGAA+TGG | - | chr1_2:53582553-53582572 | Msa0077120:intron | 35.0% | |
| CAACAATTCACTAAGTATGC+TGG | - | chr1_2:53582579-53582598 | Msa0077120:intron | 35.0% | |
| !! | GTTTGTTTTCTCATGCATCT+TGG | + | chr1_2:53582727-53582746 | None:intergenic | 35.0% |
| AACAAACACTGTTACACAAC+AGG | - | chr1_2:53582740-53582759 | Msa0077120:intron | 35.0% | |
| CTTTCTTACAAGAATGAGAC+TGG | - | chr1_2:53582774-53582793 | Msa0077120:intron | 35.0% | |
| ! | AGAAGTCACAATAGACCTTT+TGG | + | chr1_2:53582814-53582833 | None:intergenic | 35.0% |
| GTTTGACAAATGGAAAGATG+TGG | - | chr1_2:53582872-53582891 | Msa0077120:intron | 35.0% | |
| GAAAGATGTGGCAATCAATA+AGG | - | chr1_2:53582884-53582903 | Msa0077120:intron | 35.0% | |
| TAGGTGAGAGCAAATATGAA+CGG | + | chr1_2:53582955-53582974 | None:intergenic | 35.0% | |
| ! | GGAATTTTTCCAGCAACATT+GGG | + | chr1_2:53582984-53583003 | None:intergenic | 35.0% |
| ! | TGGAATTTTTCCAGCAACAT+TGG | + | chr1_2:53582985-53583004 | None:intergenic | 35.0% |
| TGTGAATAAGTGATCGCACT+AGG | + | chr1_2:53579460-53579479 | None:intergenic | 40.0% | |
| GTGCGATCACTTATTCACAT+TGG | - | chr1_2:53579461-53579480 | Msa0077120:CDS | 40.0% | |
| GCTCATCAGACATGGTTAAA+TGG | + | chr1_2:53579511-53579530 | None:intergenic | 40.0% | |
| CAAAATGTGCTCATCAGACA+TGG | + | chr1_2:53579519-53579538 | None:intergenic | 40.0% | |
| ! | CATGTCTGATGAGCACATTT+TGG | - | chr1_2:53579517-53579536 | Msa0077120:CDS | 40.0% |
| GCAGAACGTTATCAACAACA+TGG | + | chr1_2:53579634-53579653 | None:intergenic | 40.0% | |
| ! | GCAGATGATATAGTCTTGCT+TGG | - | chr1_2:53579733-53579752 | Msa0077120:CDS | 40.0% |
| TAGAAGCAAGACGGAGTATA+TGG | - | chr1_2:53579831-53579850 | Msa0077120:CDS | 40.0% | |
| AACTTCAGCAAAAGGAGAAG+TGG | - | chr1_2:53579859-53579878 | Msa0077120:CDS | 40.0% | |
| ACTTCAGCAAAAGGAGAAGT+GGG | - | chr1_2:53579860-53579879 | Msa0077120:CDS | 40.0% | |
| GTACATCATCGTATTCAAGC+CGG | - | chr1_2:53579985-53580004 | Msa0077120:CDS | 40.0% | |
| TACATCATCGTATTCAAGCC+GGG | - | chr1_2:53579986-53580005 | Msa0077120:CDS | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | - | chr1_2:53580193-53580212 | Msa0077120:CDS | 40.0% | |
| AGATCAAATGGAGGAGAATC+AGG | - | chr1_2:53580343-53580362 | Msa0077120:intron | 40.0% | |
| GAGGAGAATCAGGTTAAAAG+AGG | - | chr1_2:53580353-53580372 | Msa0077120:intron | 40.0% | |
| AAGCATTATCCCACTAAGTG+GGG | + | chr1_2:53580499-53580518 | None:intergenic | 40.0% | |
| CAAGCATTATCCCACTAAGT+GGG | + | chr1_2:53580500-53580519 | None:intergenic | 40.0% | |
| TCAAGCATTATCCCACTAAG+TGG | + | chr1_2:53580501-53580520 | None:intergenic | 40.0% | |
| AATTATCAGGGACATCAAGG+AGG | - | chr1_2:53580651-53580670 | Msa0077120:intron | 40.0% | |
| ! | GTGGATTAATGTTATCCAGG+TGG | + | chr1_2:53580683-53580702 | None:intergenic | 40.0% |
| !! | CTGGTGGATTAATGTTATCC+AGG | + | chr1_2:53580686-53580705 | None:intergenic | 40.0% |
| !! | GAAGACTAAGAGCATCCTAA+TGG | - | chr1_2:53580841-53580860 | Msa0077120:intron | 40.0% |
| TTGTATCTATCTCTCACCAG+TGG | - | chr1_2:53581238-53581257 | Msa0077120:intron | 40.0% | |
| ! | GCCAGGATTTTTATAAAGCC+CGG | - | chr1_2:53581265-53581284 | Msa0077120:intron | 40.0% |
| ! | CCAGGATTTTTATAAAGCCC+GGG | - | chr1_2:53581266-53581285 | Msa0077120:intron | 40.0% |
| !!! | TGTCATTTTGTGAGAGACAG+GGG | + | chr1_2:53581481-53581500 | None:intergenic | 40.0% |
| ACACTTCCATAATTTCCGTC+GGG | + | chr1_2:53581767-53581786 | None:intergenic | 40.0% | |
| TGATGGTTCGACTAAAACAC+TGG | - | chr1_2:53581833-53581852 | Msa0077120:intron | 40.0% | |
| AAGCCAACACAAGATTGTGT+GGG | - | chr1_2:53582068-53582087 | Msa0077120:intron | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | + | chr1_2:53582096-53582115 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | + | chr1_2:53582097-53582116 | None:intergenic | 40.0% | |
| !! | CTTTGAAGTCAAAGATGCCT+TGG | - | chr1_2:53582139-53582158 | Msa0077120:intron | 40.0% |
| TTTCTTGTGTTGAGTCCACA+AGG | - | chr1_2:53582239-53582258 | Msa0077120:intron | 40.0% | |
| CTCCCCAAACTTGAATCATA+TGG | + | chr1_2:53582289-53582308 | None:intergenic | 40.0% | |
| ! | GATTCAAGTTTGGGGAGTAA+AGG | - | chr1_2:53582292-53582311 | Msa0077120:intron | 40.0% |
| TATATCAATGTCAGCCAGCA+GGG | + | chr1_2:53582378-53582397 | None:intergenic | 40.0% | |
| TTATATCAATGTCAGCCAGC+AGG | + | chr1_2:53582379-53582398 | None:intergenic | 40.0% | |
| ! | AATAGCGGCATCATTTGCTA+GGG | + | chr1_2:53582607-53582626 | None:intergenic | 40.0% |
| TAATAGCGGCATCATTTGCT+AGG | + | chr1_2:53582608-53582627 | None:intergenic | 40.0% | |
| AGTCTTCGTCTGCTTAATAG+CGG | + | chr1_2:53582622-53582641 | None:intergenic | 40.0% | |
| GTTGAGACTCCAAGCAAAAT+AGG | + | chr1_2:53582653-53582672 | None:intergenic | 40.0% | |
| TTACAAGAATGAGACTGGGT+GGG | - | chr1_2:53582779-53582798 | Msa0077120:intron | 40.0% | |
| AGGTCTATTGTGACTTCTGT+TGG | - | chr1_2:53582816-53582835 | Msa0077120:intron | 40.0% | |
| ATTGTGACTTCTGTTGGTCA+TGG | - | chr1_2:53582822-53582841 | Msa0077120:intron | 40.0% | |
| TTGTGACTTCTGTTGGTCAT+GGG | - | chr1_2:53582823-53582842 | Msa0077120:intron | 40.0% | |
| TCTGGACACTCGATAAAATC+TGG | + | chr1_2:53583005-53583024 | None:intergenic | 40.0% | |
| ! | AGCTACAAGTGTTGCCATAA+CGG | - | chr1_2:53583053-53583072 | Msa0077120:CDS | 40.0% |
| ! | CAACATGGGTTGAACGTGTA+AGG | + | chr1_2:53579619-53579638 | None:intergenic | 45.0% |
| TAAACGAGAGGCTAGAGACT+TGG | - | chr1_2:53579773-53579792 | Msa0077120:CDS | 45.0% | |
| TCTACCTTGGAGGTGAAAGT+TGG | - | chr1_2:53579883-53579902 | Msa0077120:CDS | 45.0% | |
| ATCTCCAACTTTCACCTCCA+AGG | + | chr1_2:53579890-53579909 | None:intergenic | 45.0% | |
| TCTTCTCCATTTCAACCACC+CGG | + | chr1_2:53580007-53580026 | None:intergenic | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | - | chr1_2:53580012-53580031 | Msa0077120:intron | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | + | chr1_2:53580031-53580050 | None:intergenic | 45.0% | |
| ACCGGCAATGTTGTATGGTA+CGG | - | chr1_2:53580098-53580117 | Msa0077120:intron | 45.0% | |
| TCCGTACCATACAACATTGC+CGG | + | chr1_2:53580102-53580121 | None:intergenic | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | - | chr1_2:53580106-53580125 | Msa0077120:intron | 45.0% | |
| ! | GTTGTATGGTACGGAGTGTT+GGG | - | chr1_2:53580107-53580126 | Msa0077120:intron | 45.0% |
| CGCTTACTTTACTCTCGTGT+TGG | + | chr1_2:53580143-53580162 | None:intergenic | 45.0% | |
| CGAGAGTAAAGTAAGCGTAG+CGG | - | chr1_2:53580146-53580165 | Msa0077120:CDS | 45.0% | |
| AGGATGTTACGTTGGATGAG+TGG | - | chr1_2:53580174-53580193 | Msa0077120:CDS | 45.0% | |
| ACACCATTAGAGAGAGAGAG+TGG | - | chr1_2:53580226-53580245 | Msa0077120:CDS | 45.0% | |
| CACCATTAGAGAGAGAGAGT+GGG | - | chr1_2:53580227-53580246 | Msa0077120:CDS | 45.0% | |
| ACCATTAGAGAGAGAGAGTG+GGG | - | chr1_2:53580228-53580247 | Msa0077120:CDS | 45.0% | |
| ATTATCCCACTAAGTGGGGT+CGG | + | chr1_2:53580495-53580514 | None:intergenic | 45.0% | |
| ! | TAGTAGTGGAACCCACTTAG+TGG | - | chr1_2:53581194-53581213 | Msa0077120:intron | 45.0% |
| ! | AGTGGGTTCTACCACTAAGT+GGG | + | chr1_2:53581208-53581227 | None:intergenic | 45.0% |
| !! | TAGTGGGTTCTACCACTAAG+TGG | + | chr1_2:53581209-53581228 | None:intergenic | 45.0% |
| TATCTATCTCTCACCAGTGG+CGG | - | chr1_2:53581241-53581260 | Msa0077120:intron | 45.0% | |
| ! | CCCGGGCTTTATAAAAATCC+TGG | + | chr1_2:53581269-53581288 | None:intergenic | 45.0% |
| TCAAACCCCGACGGAAATTA+TGG | - | chr1_2:53581758-53581777 | Msa0077120:intron | 45.0% | |
| CACTTCCATAATTTCCGTCG+GGG | + | chr1_2:53581766-53581785 | None:intergenic | 45.0% | |
| ! | CCATCATAGATGGGAGCTTT+TGG | + | chr1_2:53581819-53581838 | None:intergenic | 45.0% |
| CCAAAAGCTCCCATCTATGA+TGG | - | chr1_2:53581816-53581835 | Msa0077120:intron | 45.0% | |
| GAAGCCAACACAAGATTGTG+TGG | - | chr1_2:53582067-53582086 | Msa0077120:intron | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | + | chr1_2:53582074-53582093 | None:intergenic | 45.0% | |
| GCATCACTTTGCACCCATTA+AGG | - | chr1_2:53582170-53582189 | Msa0077120:intron | 45.0% | |
| CTTACAAGAATGAGACTGGG+TGG | - | chr1_2:53582778-53582797 | Msa0077120:intron | 45.0% | |
| GGTGGGCAATTGTAACCAAA+AGG | - | chr1_2:53582796-53582815 | Msa0077120:intron | 45.0% | |
| CAGTGTCCGAGTTTGACAAA+TGG | - | chr1_2:53582862-53582881 | Msa0077120:intron | 45.0% | |
| CAGCAACATTGGGAATCTCT+AGG | + | chr1_2:53582974-53582993 | None:intergenic | 45.0% | |
| CTAGAGATTCCCAATGTTGC+TGG | - | chr1_2:53582972-53582991 | Msa0077120:CDS | 45.0% | |
| TCCAGATTGTCACTGCACAA+TGG | - | chr1_2:53583019-53583038 | Msa0077120:CDS | 45.0% | |
| TCCATTGTGCAGTGACAATC+TGG | + | chr1_2:53583023-53583042 | None:intergenic | 45.0% | |
| ! | TAGTCTTGCTTGGTGAGTCG+AGG | - | chr1_2:53579743-53579762 | Msa0077120:CDS | 50.0% |
| ! | AGTCTTGCTTGGTGAGTCGA+GGG | - | chr1_2:53579744-53579763 | Msa0077120:CDS | 50.0% |
| ! | AGGCAAGCCTTAGAAGCGTA+TGG | - | chr1_2:53579796-53579815 | Msa0077120:CDS | 50.0% |
| ACTCCGTCTTGCTTCTACTC+AGG | + | chr1_2:53579828-53579847 | None:intergenic | 50.0% | |
| AAGGAGAAGTGGGTCTACCT+TGG | - | chr1_2:53579870-53579889 | Msa0077120:CDS | 50.0% | |
| ATCATCGTATTCAAGCCGGG+TGG | - | chr1_2:53579989-53580008 | Msa0077120:CDS | 50.0% | |
| TTCAAGCCGGGTGGTTGAAA+TGG | - | chr1_2:53579998-53580017 | Msa0077120:CDS | 50.0% | |
| CTATCGAACAGCAGTCAGAC+CGG | - | chr1_2:53580080-53580099 | Msa0077120:intron | 50.0% | |
| GTCAGACCGGCAATGTTGTA+TGG | - | chr1_2:53580093-53580112 | Msa0077120:intron | 50.0% | |
| ! | AAGTAAGCGTAGCGGAGATG+AGG | - | chr1_2:53580154-53580173 | Msa0077120:CDS | 50.0% |
| CGGAGATGAGGATGTTACGT+TGG | - | chr1_2:53580166-53580185 | Msa0077120:CDS | 50.0% | |
| CCATTAGAGAGAGAGAGTGG+GGG | - | chr1_2:53580229-53580248 | Msa0077120:CDS | 50.0% | |
| AACGGTGAAGTGAAGCTAGC+TGG | + | chr1_2:53580705-53580724 | None:intergenic | 50.0% | |
| AAAAAATTTGGGCCGGAGCC+CGG | - | chr1_2:53581422-53581441 | Msa0077120:intron | 50.0% | |
| ! | CATTTTGTGAGAGACAGGGG+CGG | + | chr1_2:53581478-53581497 | None:intergenic | 50.0% |
| GAAGCTCTTTCAAACCCCGA+CGG | - | chr1_2:53581749-53581768 | Msa0077120:intron | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | - | chr1_2:53582080-53582099 | Msa0077120:intron | 50.0% | |
| !! | AATGTGGGTTGATTCCCTGC+TGG | - | chr1_2:53582361-53582380 | Msa0077120:intron | 50.0% |
| GGAGTCTCAACAGCCAAATG+TGG | - | chr1_2:53582662-53582681 | Msa0077120:intron | 50.0% | |
| GTGTTGCCATAACGGCGATA+AGG | - | chr1_2:53583061-53583080 | Msa0077120:CDS | 50.0% | |
| !! | CATTGGCCTTATCGCCGTTA+TGG | + | chr1_2:53583070-53583089 | None:intergenic | 50.0% |
| CATAACGGCGATAAGGCCAA+TGG | - | chr1_2:53583068-53583087 | Msa0077120:CDS | 50.0% | |
| CGAGGGAGGAGTTAAACGAG+AGG | - | chr1_2:53579761-53579780 | Msa0077120:CDS | 55.0% | |
| ACGAGAGGCTAGAGACTTGG+AGG | - | chr1_2:53579776-53579795 | Msa0077120:CDS | 55.0% | |
| GCGGAAGCCATACGCTTCTA+AGG | + | chr1_2:53579806-53579825 | None:intergenic | 55.0% | |
| CCGTCTTGCTTCTACTCAGG+CGG | + | chr1_2:53579825-53579844 | None:intergenic | 55.0% | |
| CCGCCTGAGTAGAAGCAAGA+CGG | - | chr1_2:53579822-53579841 | Msa0077120:CDS | 55.0% | |
| GAGAAGTGGGTCTACCTTGG+AGG | - | chr1_2:53579873-53579892 | Msa0077120:CDS | 55.0% | |
| !! | GTATGGTACGGAGTGTTGGG+TGG | - | chr1_2:53580110-53580129 | Msa0077120:intron | 55.0% |
| CCCCCACTCTCTCTCTCTAA+TGG | + | chr1_2:53580232-53580251 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1_2:53580487-53580506 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1_2:53580486-53580505 | Msa0077120:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1_2:53580487-53580506 | Msa0077120:CDS | 55.0% | |
| TCAGGGACATCAAGGAGGTC+TGG | - | chr1_2:53580656-53580675 | Msa0077120:intron | 55.0% | |
| GGTGAAGTGAAGCTAGCTGG+TGG | + | chr1_2:53580702-53580721 | None:intergenic | 55.0% | |
| AAAAATCCTGGCTCCGCCAC+TGG | + | chr1_2:53581257-53581276 | None:intergenic | 55.0% | |
| AAAAATTTGGGCCGGAGCCC+GGG | - | chr1_2:53581423-53581442 | Msa0077120:intron | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | - | chr1_2:53582083-53582102 | Msa0077120:intron | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | - | chr1_2:53582088-53582107 | Msa0077120:intron | 55.0% | |
| ! | CTTGCTTGGTGAGTCGAGGG+AGG | - | chr1_2:53579747-53579766 | Msa0077120:CDS | 60.0% |
| TCAAGGAGGTCTGGACCACC+TGG | - | chr1_2:53580665-53580684 | Msa0077120:intron | 60.0% | |
| GAGAGACAGGGGCGGTTCTA+AGG | + | chr1_2:53581470-53581489 | None:intergenic | 60.0% | |
| !! | ACAGGGGCGGTTCTAAGGCC+CGG | + | chr1_2:53581465-53581484 | None:intergenic | 65.0% |
| ! | CTCTCACCAGTGGCGGAGCC+AGG | - | chr1_2:53581248-53581267 | Msa0077120:intron | 70.0% |
| ! | CCGTGCACTCGCCCGGGCTC+CGG | + | chr1_2:53581437-53581456 | None:intergenic | 80.0% |
| ! | CCGGAGCCCGGGCGAGTGCA+CGG | - | chr1_2:53581434-53581453 | Msa0077120:intron | 80.0% |
| ! | CGGAGCCCGGGCGAGTGCAC+GGG | - | chr1_2:53581435-53581454 | Msa0077120:intron | 80.0% |
| ! | GCGAGCCCGTGCACTCGCCC+GGG | + | chr1_2:53581443-53581462 | None:intergenic | 80.0% |
| ! | GGCGAGCCCGTGCACTCGCC+CGG | + | chr1_2:53581444-53581463 | None:intergenic | 80.0% |
| ! | GGGCGAGTGCACGGGCTCGC+CGG | - | chr1_2:53581443-53581462 | Msa0077120:intron | 80.0% |
| ! | GGCGAGTGCACGGGCTCGCC+GGG | - | chr1_2:53581444-53581463 | Msa0077120:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 53579449 | 53583100 | 53579449 | ID=Msa0077120;Name=Msa0077120 |
| chr1_2 | mRNA | 53579449 | 53583100 | 53579449 | ID=Msa0077120-mRNA-1;Parent=Msa0077120;Name=Msa0077120-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|4|0|381 |
| chr1_2 | exon | 53582894 | 53583100 | 53582894 | ID=Msa0077120-mRNA-1:exon:16618;Parent=Msa0077120-mRNA-1 |
| chr1_2 | exon | 53580389 | 53580597 | 53580389 | ID=Msa0077120-mRNA-1:exon:16617;Parent=Msa0077120-mRNA-1 |
| chr1_2 | exon | 53580140 | 53580296 | 53580140 | ID=Msa0077120-mRNA-1:exon:16616;Parent=Msa0077120-mRNA-1 |
| chr1_2 | exon | 53579449 | 53580021 | 53579449 | ID=Msa0077120-mRNA-1:exon:16615;Parent=Msa0077120-mRNA-1 |
| chr1_2 | CDS | 53582894 | 53583100 | 53582894 | ID=Msa0077120-mRNA-1:cds;Parent=Msa0077120-mRNA-1 |
| chr1_2 | CDS | 53580389 | 53580597 | 53580389 | ID=Msa0077120-mRNA-1:cds;Parent=Msa0077120-mRNA-1 |
| chr1_2 | CDS | 53580140 | 53580296 | 53580140 | ID=Msa0077120-mRNA-1:cds;Parent=Msa0077120-mRNA-1 |
| chr1_2 | CDS | 53579449 | 53580021 | 53579449 | ID=Msa0077120-mRNA-1:cds;Parent=Msa0077120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
