AlfalfaGEDB | Msa0125890

M. sativa cultivar zhongmu-4 / Msa0125890

KEGG: K02183|K13448
GO: GO:0005513 GO:0007154 GO:0007165 GO:0008150 GO:0009593 GO:0009987 GO:0010035 GO:0010038 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051606 GO:0051716 GO:0065007
PFAM: PF13499.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125890	XP_013468780.1	95.455	110	5	0	1	110	1	110	8.57e-69	213

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125890	sp\|P27163\|CALM2_PETHY	78.761	113	24	0	1	113	1	113	1.19e-59	182

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125890	A0A072VLW5	95.455	110	5	0	1	110	1	110	4.09e-69	213

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030800	Msa0125890	0.811645	6.311709e-51	-8.615850e-47
Msa0078150	Msa0125890	0.805903	1.066096e-49	-8.615850e-47
Msa0078210	Msa0125890	0.810515	1.109500e-50	-8.615850e-47
Msa0125890	Msa0162680	0.810835	9.458597e-51	-8.615850e-47
Msa0125890	Msa0170600	0.923264	3.338670e-89	-8.615850e-47
Msa0125890	Msa0267900	0.808777	2.621097e-50	-8.615850e-47
Msa0125890	Msa0316230	0.802796	4.733072e-49	-8.615850e-47
Msa0125890	Msa0568110	0.832183	1.092919e-55	-8.615850e-47
Msa0125890	Msa0570460	0.831728	1.416210e-55	-8.615850e-47
Msa0125890	Msa0704560	0.821649	3.608622e-53	-8.615850e-47
Msa0125890	Msa1030210	0.811667	6.243227e-51	-8.615850e-47
Msa0125890	Msa1069250	0.821117	4.789179e-53	-8.615850e-47
Msa0125890	Msa1089600	0.801029	1.091545e-48	-8.615850e-47
Msa0125890	Msa1120580	0.812706	3.704052e-51	-8.615850e-47
Msa0125890	Msa1157110	0.802644	5.087257e-49	-8.615850e-47
Msa0125890	Msa1264660	0.820420	6.925416e-53	-8.615850e-47
Msa0125890	Msa1413680	0.922006	1.721673e-88	-8.615850e-47
Msa0125890	Msa1427000	0.834111	3.619891e-56	-8.615850e-47
Msa0125890	Msa1438160	0.815155	1.068429e-51	-8.615850e-47
Msa0125890	Msa1439780	0.821470	3.968822e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125890	MtrunA17_Chr1g0188171	95.455	110	5	0	1	110	1	110	7.89e-73	213
Msa0125890	MtrunA17_Chr1g0188171	43.548	62	35	0	12	73	85	146	4.53e-12	58.9
Msa0125890	MtrunA17_Chr1g0166281	81.818	110	20	0	1	110	1	110	5.85e-62	186
Msa0125890	MtrunA17_Chr1g0166281	46.774	62	33	0	12	73	85	146	3.58e-12	59.3
Msa0125890	MtrunA17_Chr5g0440931	76.106	113	27	0	1	113	1	113	1.77e-59	179
Msa0125890	MtrunA17_Chr5g0440931	45.070	71	36	1	6	76	82	149	5.10e-12	58.5
Msa0125890	MtrunA17_Chr6g0460211	75.221	113	28	0	1	113	1	113	5.46e-59	178
Msa0125890	MtrunA17_Chr6g0460211	45.070	71	36	1	6	76	82	149	4.99e-12	58.9
Msa0125890	MtrunA17_Chr3g0093271	75.221	113	28	0	1	113	52	164	1.56e-58	179
Msa0125890	MtrunA17_Chr3g0093271	45.070	71	36	1	6	76	133	200	7.92e-12	59.3
Msa0125890	MtrunA17_Chr7g0254731	74.336	113	29	0	1	113	1	113	1.86e-57	174
Msa0125890	MtrunA17_Chr7g0254731	44.737	76	39	1	1	76	77	149	8.55e-13	60.8
Msa0125890	MtrunA17_Chr7g0274101	66.372	113	38	0	1	113	1	113	7.07e-41	132
Msa0125890	MtrunA17_Chr1g0185001	50.000	110	54	1	1	110	1	109	9.67e-34	114
Msa0125890	MtrunA17_Chr7g0245231	45.045	111	61	0	3	113	21	131	1.45e-28	102
Msa0125890	MtrunA17_Chr6g0450921	42.342	111	64	0	3	113	20	130	2.00e-26	96.3
Msa0125890	MtrunA17_Chr5g0398751	41.441	111	63	1	1	111	1	109	3.05e-25	92.8
Msa0125890	MtrunA17_Chr8g0366401	40.179	112	64	1	5	113	10	121	4.34e-24	90.1
Msa0125890	MtrunA17_Chr8g0366401	46.875	64	31	1	6	69	90	150	2.54e-11	57.0
Msa0125890	MtrunA17_Chr3g0100471	54.930	71	32	0	5	75	45	115	1.34e-23	87.4
Msa0125890	MtrunA17_Chr1g0161211	45.455	99	54	0	12	110	46	144	3.77e-23	88.6
Msa0125890	MtrunA17_Chr4g0062221	41.346	104	53	2	8	106	7	107	1.04e-21	84.3
Msa0125890	MtrunA17_Chr4g0062221	40.789	76	42	1	4	79	81	153	8.68e-13	61.2
Msa0125890	MtrunA17_Chr8g0368681	39.815	108	63	1	1	106	1	108	7.26e-21	82.0
Msa0125890	MtrunA17_Chr8g0368681	36.842	76	45	1	4	79	82	154	5.88e-12	58.9
Msa0125890	MtrunA17_Chr8g0391691	41.176	102	60	0	12	113	36	137	9.22e-21	82.4
Msa0125890	MtrunA17_Chr8g0391691	51.562	64	31	0	6	69	103	166	1.09e-14	66.6
Msa0125890	MtrunA17_Chr7g0256701	42.718	103	55	2	11	109	72	174	1.44e-20	82.4
Msa0125890	MtrunA17_Chr0c02g0489761	41.509	106	61	1	1	106	372	476	4.82e-19	80.9
Msa0125890	MtrunA17_Chr4g0033601	38.235	102	63	0	12	113	5	106	6.59e-19	76.6
Msa0125890	MtrunA17_Chr4g0033601	50.000	64	30	1	12	73	78	141	7.12e-13	60.8
Msa0125890	MtrunA17_Chr8g0392951	40.594	101	59	1	13	113	25	124	1.74e-18	75.9
Msa0125890	MtrunA17_Chr8g0392951	40.625	64	38	0	10	73	94	157	4.15e-11	56.6
Msa0125890	MtrunA17_Chr5g0441691	38.679	106	64	1	1	106	362	466	2.64e-17	75.9
Msa0125890	MtrunA17_Chr8g0387671	38.679	106	64	1	1	106	360	464	3.23e-17	75.9
Msa0125890	MtrunA17_Chr1g0176751	38.889	108	65	1	1	108	418	524	3.24e-17	75.9
Msa0125890	MtrunA17_Chr1g0200601	41.667	108	58	2	1	106	324	428	1.16e-16	74.3
Msa0125890	MtrunA17_Chr5g0397101	37.736	106	65	1	1	106	360	464	1.40e-16	73.9
Msa0125890	MtrunA17_Chr7g0242561	38.679	106	64	1	1	106	350	454	1.47e-16	73.9
Msa0125890	MtrunA17_Chr5g0434951	38.000	100	61	1	14	113	6	104	1.70e-16	70.1
Msa0125890	MtrunA17_Chr7g0267751	37.273	110	68	1	1	110	429	537	2.70e-16	73.2
Msa0125890	MtrunA17_Chr3g0131181	37.736	106	65	1	1	106	323	427	3.03e-16	73.2
Msa0125890	MtrunA17_Chr3g0100541	39.640	111	52	1	1	111	41	136	3.61e-16	70.1
Msa0125890	MtrunA17_Chr4g0059951	37.736	106	65	1	1	106	367	471	3.68e-16	72.8
Msa0125890	MtrunA17_Chr3g0100561	42.056	107	47	1	1	107	41	132	5.80e-16	69.7
Msa0125890	MtrunA17_Chr4g0074811	36.792	106	66	1	1	106	385	489	5.96e-16	72.0
Msa0125890	MtrunA17_Chr3g0111371	40.000	100	56	2	14	113	7	102	7.58e-16	68.6
Msa0125890	MtrunA17_Chr1g0169581	35.294	102	64	1	14	113	6	107	9.22e-16	68.2
Msa0125890	MtrunA17_Chr1g0169581	44.444	63	35	0	13	75	80	142	8.82e-12	57.8
Msa0125890	MtrunA17_Chr3g0100511	39.640	111	52	1	1	111	41	136	1.02e-15	68.9
Msa0125890	MtrunA17_Chr8g0385341	37.736	106	65	1	1	106	324	428	1.27e-15	71.2
Msa0125890	MtrunA17_Chr1g0157131	35.135	111	71	1	1	111	368	477	1.83e-15	70.9
Msa0125890	MtrunA17_Chr5g0444171	36.792	106	66	1	1	106	386	490	1.99e-15	70.9
Msa0125890	MtrunA17_Chr1g0170281	36.792	106	66	1	1	106	412	516	2.15e-15	70.5
Msa0125890	MtrunA17_Chr6g0482731	39.583	96	56	2	13	107	27	121	2.40e-15	67.8
Msa0125890	MtrunA17_Chr6g0482731	45.455	66	36	0	13	78	100	165	2.09e-13	62.8
Msa0125890	MtrunA17_Chr5g0448721	35.849	106	67	1	1	106	390	494	5.76e-15	69.3
Msa0125890	MtrunA17_Chr3g0098951	35.849	106	67	1	1	106	377	481	1.62e-14	68.2
Msa0125890	MtrunA17_Chr7g0256171	41.237	97	57	0	17	113	10	106	3.95e-14	64.3
Msa0125890	MtrunA17_Chr4g0033371	35.514	107	68	1	5	111	370	475	7.46e-14	66.2
Msa0125890	MtrunA17_Chr3g0121191	40.000	80	48	0	6	85	150	229	8.59e-14	64.7
Msa0125890	MtrunA17_Chr4g0064231	36.441	118	59	2	12	113	64	181	1.82e-13	63.9
Msa0125890	MtrunA17_Chr4g0064231	49.275	69	33	1	7	73	148	216	4.20e-12	60.1
Msa0125890	MtrunA17_Chr8g0351681	36.190	105	60	2	13	110	50	154	2.82e-13	62.8
Msa0125890	MtrunA17_Chr7g0225921	46.269	67	36	0	7	73	74	140	2.91e-13	61.6
Msa0125890	MtrunA17_Chr7g0225921	27.103	107	76	2	8	113	2	107	7.17e-11	55.5
Msa0125890	MtrunA17_Chr7g0245911	33.962	106	62	2	13	110	48	153	3.15e-13	62.8
Msa0125890	MtrunA17_Chr1g0176421	34.906	106	68	1	1	106	455	559	3.39e-13	64.3
Msa0125890	MtrunA17_Chr3g0100461	41.333	75	37	1	1	75	41	108	1.17e-12	59.7
Msa0125890	MtrunA17_Chr6g0459231	40.299	67	40	0	7	73	75	141	2.01e-12	59.7
Msa0125890	MtrunA17_Chr7g0245371	33.333	111	64	1	13	113	25	135	4.09e-12	59.7
Msa0125890	MtrunA17_Chr1g0169621	33.333	96	63	1	14	108	6	101	3.23e-11	57.0
Msa0125890	MtrunA17_Chr7g0257751	31.858	113	72	2	1	111	352	461	5.29e-11	58.2
Msa0125890	MtrunA17_Chr5g0409441	28.155	103	74	0	9	111	19	121	6.48e-11	56.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125890	AT3G22930.2	80.769	104	20	0	5	108	28	131	3.29e-59	178
Msa0125890	AT3G43810.1	75.221	113	28	0	1	113	1	113	7.53e-59	178
Msa0125890	AT3G43810.1	45.070	71	36	1	6	76	82	149	6.89e-12	58.9
Msa0125890	AT3G56800.1	75.221	113	28	0	1	113	1	113	7.70e-59	178
Msa0125890	AT3G56800.1	45.070	71	36	1	6	76	82	149	6.40e-12	58.9
Msa0125890	AT2G41110.1	75.221	113	28	0	1	113	1	113	7.70e-59	178
Msa0125890	AT2G41110.1	45.070	71	36	1	6	76	82	149	6.40e-12	58.9
Msa0125890	AT2G27030.1	75.221	113	28	0	1	113	1	113	7.70e-59	178
Msa0125890	AT2G27030.1	45.070	71	36	1	6	76	82	149	6.40e-12	58.9
Msa0125890	AT5G21274.1	75.221	113	28	0	1	113	1	113	7.96e-59	178
Msa0125890	AT5G21274.1	42.105	76	41	1	1	76	77	149	2.31e-11	57.4
Msa0125890	AT2G27030.3	75.221	113	28	0	1	113	1	113	8.56e-59	179
Msa0125890	AT2G27030.3	38.298	94	55	1	6	99	82	172	2.90e-12	60.5
Msa0125890	AT1G66410.1	75.221	113	28	0	1	113	1	113	9.17e-59	178
Msa0125890	AT1G66410.1	45.070	71	36	1	6	76	82	149	2.38e-12	60.1
Msa0125890	AT5G37780.1	75.221	113	28	0	1	113	1	113	9.17e-59	178
Msa0125890	AT5G37780.1	45.070	71	36	1	6	76	82	149	2.38e-12	60.1
Msa0125890	AT3G43810.2	75.221	113	28	0	1	113	1	113	3.49e-58	179
Msa0125890	AT3G43810.2	45.588	68	34	1	6	73	82	146	3.35e-11	58.2
Msa0125890	AT3G22930.1	77.358	106	24	0	5	110	28	133	9.20e-58	176
Msa0125890	AT3G22930.1	45.161	62	34	0	12	73	108	169	2.47e-11	57.8
Msa0125890	AT4G14640.3	79.612	103	21	0	4	106	5	107	1.45e-57	174
Msa0125890	AT4G14640.1	75.701	107	26	0	4	110	5	111	7.99e-57	173
Msa0125890	AT4G14640.1	45.161	62	34	0	12	73	86	147	2.15e-12	60.1
Msa0125890	AT2G41110.2	68.000	125	28	1	1	113	1	125	4.49e-55	169
Msa0125890	AT2G41110.2	45.070	71	36	1	6	76	94	161	7.70e-12	58.9
Msa0125890	AT5G37780.2	66.406	128	28	1	1	113	1	128	2.05e-54	167
Msa0125890	AT5G37780.2	45.070	71	36	1	6	76	97	164	3.16e-12	60.1
Msa0125890	AT5G37780.3	61.151	139	28	1	1	113	1	139	1.41e-52	163
Msa0125890	AT5G37780.3	45.070	71	36	1	6	76	108	175	4.32e-12	59.7
Msa0125890	AT1G66410.2	69.106	123	28	1	1	113	1	123	3.10e-50	156
Msa0125890	AT1G66410.2	45.070	71	36	1	6	76	92	159	2.87e-12	60.1
Msa0125890	AT4G14640.2	77.647	85	19	0	26	110	9	93	3.61e-45	143
Msa0125890	AT4G14640.2	45.161	62	34	0	12	73	68	129	8.45e-13	60.8
Msa0125890	AT5G37780.4	75.000	88	22	0	26	113	13	100	1.17e-44	142
Msa0125890	AT5G37780.4	45.070	71	36	1	6	76	69	136	1.62e-12	60.1
Msa0125890	AT3G43810.4	76.623	77	18	0	37	113	1	77	1.87e-38	125
Msa0125890	AT3G43810.4	45.070	71	36	1	6	76	46	113	2.43e-12	58.9
Msa0125890	AT3G43810.3	76.623	77	18	0	37	113	1	77	1.87e-38	125
Msa0125890	AT3G43810.3	45.070	71	36	1	6	76	46	113	2.43e-12	58.9
Msa0125890	AT1G66410.4	75.325	77	19	0	37	113	1	77	6.89e-38	124
Msa0125890	AT1G66410.4	45.070	71	36	1	6	76	46	113	7.68e-13	60.5
Msa0125890	AT1G66410.3	75.325	77	19	0	37	113	1	77	6.89e-38	124
Msa0125890	AT1G66410.3	45.070	71	36	1	6	76	46	113	7.68e-13	60.5
Msa0125890	AT2G41090.1	49.558	113	54	1	1	113	1	110	3.51e-31	109
Msa0125890	AT2G41100.7	44.615	130	55	1	1	113	55	184	1.35e-29	107
Msa0125890	AT2G41100.7	50.526	95	44	1	3	97	147	238	2.12e-25	97.1
Msa0125890	AT2G41100.7	37.363	91	41	2	36	110	1	91	1.89e-12	62.0
Msa0125890	AT2G41100.6	44.615	130	55	1	1	113	55	184	1.35e-29	107
Msa0125890	AT2G41100.6	50.526	95	44	1	3	97	147	238	2.12e-25	97.1
Msa0125890	AT2G41100.6	37.363	91	41	2	36	110	1	91	1.89e-12	62.0
Msa0125890	AT2G41100.3	44.615	130	55	1	1	113	55	184	1.35e-29	107
Msa0125890	AT2G41100.3	50.526	95	44	1	3	97	147	238	2.12e-25	97.1
Msa0125890	AT2G41100.3	37.363	91	41	2	36	110	1	91	1.89e-12	62.0
Msa0125890	AT2G41100.4	44.615	130	55	1	1	113	90	219	2.83e-29	107
Msa0125890	AT2G41100.4	42.063	126	57	2	1	110	1	126	2.50e-27	102
Msa0125890	AT2G41100.4	50.526	95	44	1	3	97	182	273	4.45e-25	96.7
Msa0125890	AT2G41100.1	44.615	130	55	1	1	113	90	219	2.83e-29	107
Msa0125890	AT2G41100.1	42.063	126	57	2	1	110	1	126	2.50e-27	102
Msa0125890	AT2G41100.1	50.526	95	44	1	3	97	182	273	4.45e-25	96.7
Msa0125890	AT3G51920.1	50.000	106	53	0	1	106	1	106	4.72e-29	102
Msa0125890	AT2G41100.5	50.515	97	45	1	1	97	1	94	1.14e-27	99.4
Msa0125890	AT2G41100.2	50.526	95	44	1	3	97	57	148	2.21e-26	97.4
Msa0125890	AT2G41100.2	41.304	92	37	1	39	113	3	94	8.54e-15	67.4
Msa0125890	AT3G50360.1	42.342	111	64	0	3	113	18	128	5.26e-26	95.5
Msa0125890	AT1G62820.1	40.187	107	62	1	5	111	6	110	1.93e-23	88.6
Msa0125890	AT1G12310.1	39.252	107	63	1	5	111	6	110	3.90e-23	87.8
Msa0125890	AT1G18530.1	40.952	105	54	2	7	106	2	103	8.28e-21	82.0
Msa0125890	AT1G18530.1	39.474	76	43	1	4	79	77	149	1.43e-11	58.2
Msa0125890	AT1G66400.1	41.346	104	59	1	12	113	15	118	1.27e-20	81.6
Msa0125890	AT1G66400.1	42.188	64	37	0	10	73	88	151	1.10e-11	58.5
Msa0125890	AT1G24620.1	40.000	105	63	0	9	113	34	138	4.76e-20	80.9
Msa0125890	AT1G24620.1	47.619	63	33	0	12	74	110	172	4.81e-12	59.7
Msa0125890	AT1G32250.1	36.207	116	64	3	1	106	1	116	2.58e-19	78.6
Msa0125890	AT4G37010.1	35.714	112	72	0	2	113	17	128	3.38e-19	78.2
Msa0125890	AT4G37010.2	35.714	112	72	0	2	113	21	132	3.73e-19	78.2
Msa0125890	AT3G25600.1	37.838	111	61	2	1	106	1	108	8.02e-19	77.0
Msa0125890	AT3G25600.1	38.158	76	44	1	4	79	82	154	3.23e-12	59.7
Msa0125890	AT5G37770.1	40.566	106	59	1	12	113	17	122	1.08e-18	76.6
Msa0125890	AT5G37770.1	43.077	65	37	0	10	74	92	156	2.40e-13	62.8
Msa0125890	AT5G37770.2	40.566	106	59	1	12	113	17	122	1.08e-18	76.6
Msa0125890	AT5G37770.2	43.077	65	37	0	10	74	92	156	2.40e-13	62.8
Msa0125890	AT1G73630.1	38.835	103	59	1	11	113	19	117	1.41e-18	76.3
Msa0125890	AT1G18210.2	39.216	102	58	1	12	113	23	120	1.41e-18	76.6
Msa0125890	AT1G18210.1	39.216	102	58	1	12	113	23	120	1.41e-18	76.6
Msa0125890	AT5G19360.1	41.509	106	61	1	1	106	362	466	6.71e-18	78.2
Msa0125890	AT5G12180.1	41.509	106	61	1	1	106	367	471	7.49e-18	78.2
Msa0125890	AT3G10190.1	35.965	114	71	2	1	113	59	171	6.10e-17	73.2
Msa0125890	AT4G04700.1	39.623	106	63	1	1	106	325	429	7.21e-17	75.1
Msa0125890	AT1G05990.1	38.462	104	63	1	11	113	4	107	9.10e-17	71.2
Msa0125890	AT1G05990.1	46.774	62	31	1	14	73	81	142	1.77e-11	57.8
Msa0125890	AT3G51850.1	37.736	106	65	1	1	106	348	452	1.32e-16	74.3
Msa0125890	AT4G04695.1	37.736	106	65	1	1	106	325	429	1.40e-16	74.3
Msa0125890	AT3G51850.2	37.736	106	65	1	1	106	348	452	1.40e-16	74.3
Msa0125890	AT4G04720.2	38.679	106	64	1	1	106	373	477	2.03e-16	73.9
Msa0125890	AT4G04720.1	38.679	106	64	1	1	106	373	477	2.03e-16	73.9
Msa0125890	AT3G59440.1	36.792	106	66	1	8	113	47	151	3.28e-16	70.9
Msa0125890	AT3G59440.1	44.595	74	39	1	2	73	113	186	4.31e-13	62.8
Msa0125890	AT4G23650.1	36.792	106	66	1	1	106	372	476	3.96e-16	73.2
Msa0125890	AT4G21940.1	37.736	106	65	1	1	106	395	499	1.33e-15	71.6
Msa0125890	AT5G23580.1	39.623	106	63	1	1	106	316	420	1.34e-15	71.6
Msa0125890	AT5G04870.1	37.736	106	65	1	1	106	444	548	1.37e-15	71.6
Msa0125890	AT4G21940.2	37.736	106	65	1	1	106	395	499	1.42e-15	71.6
Msa0125890	AT2G41410.1	36.634	101	62	2	15	113	73	173	1.45e-15	69.7
Msa0125890	AT2G43290.1	36.449	107	63	2	12	113	65	171	1.89e-15	69.3
Msa0125890	AT2G43290.1	51.562	64	29	1	12	73	143	206	1.66e-13	64.3
Msa0125890	AT3G03000.1	35.455	110	70	1	5	113	13	122	2.40e-15	68.2
Msa0125890	AT4G04740.4	37.255	102	63	1	5	106	366	466	2.43e-15	70.9
Msa0125890	AT4G04740.6	37.255	102	63	1	5	106	366	466	2.43e-15	70.9
Msa0125890	AT4G04740.5	37.255	102	63	1	5	106	366	466	2.43e-15	70.9
Msa0125890	AT4G04740.3	37.255	102	63	1	5	106	366	466	2.43e-15	70.9
Msa0125890	AT4G04740.1	37.255	102	63	1	5	106	366	466	2.43e-15	70.9
Msa0125890	AT4G04740.7	37.255	102	63	1	5	106	366	466	2.43e-15	70.9
Msa0125890	AT4G04740.2	37.255	102	63	1	5	106	366	466	2.61e-15	70.9
Msa0125890	AT1G76040.1	37.736	106	65	1	1	106	167	271	3.18e-15	70.1
Msa0125890	AT1G76040.4	37.736	106	65	1	1	106	167	271	3.18e-15	70.1
Msa0125890	AT4G38230.4	36.792	106	66	1	1	106	318	422	3.37e-15	70.5
Msa0125890	AT4G38230.3	36.792	106	66	1	1	106	318	422	3.37e-15	70.5
Msa0125890	AT4G38230.2	36.792	106	66	1	1	106	348	452	3.47e-15	70.5
Msa0125890	AT4G38230.1	36.792	106	66	1	1	106	174	278	3.55e-15	70.1
Msa0125890	AT1G35670.1	38.679	106	64	1	1	106	320	424	3.55e-15	70.5
Msa0125890	AT1G76040.2	37.736	106	65	1	1	106	405	509	5.19e-15	70.1
Msa0125890	AT3G10660.2	35.849	106	67	1	1	106	480	584	6.34e-15	69.7
Msa0125890	AT3G10660.1	35.849	106	67	1	1	106	480	584	6.34e-15	69.7
Msa0125890	AT1G61950.1	35.849	106	67	1	1	106	393	497	6.41e-15	69.7
Msa0125890	AT4G09570.1	39.815	108	60	2	1	106	319	423	1.12e-14	68.9
Msa0125890	AT4G04710.1	36.792	106	66	1	1	106	339	443	3.26e-14	67.8
Msa0125890	AT1G76040.3	37.624	101	62	1	1	101	405	504	3.34e-14	67.4
Msa0125890	AT4G04710.2	36.792	106	66	1	1	106	326	430	3.35e-14	67.4
Msa0125890	AT4G04710.3	36.792	106	66	1	1	106	312	416	3.43e-14	67.4
Msa0125890	AT4G35310.2	34.906	106	68	1	1	106	391	495	3.58e-14	67.4
Msa0125890	AT4G35310.1	34.906	106	68	1	1	106	391	495	3.58e-14	67.4
Msa0125890	AT2G17290.1	34.906	106	68	1	1	106	379	483	3.90e-14	67.4
Msa0125890	AT2G17290.2	34.906	106	68	1	1	106	379	483	3.90e-14	67.4
Msa0125890	AT4G21940.3	38.384	99	60	1	1	99	395	492	4.19e-14	67.4
Msa0125890	AT3G20410.2	34.906	106	68	1	1	106	385	489	1.69e-13	65.5
Msa0125890	AT3G20410.1	34.906	106	68	1	1	106	385	489	1.69e-13	65.5
Msa0125890	AT4G03290.1	35.849	106	65	1	11	113	4	109	1.87e-13	62.8
Msa0125890	AT4G03290.1	48.438	64	31	1	14	75	83	146	1.19e-12	60.8
Msa0125890	AT2G38910.1	34.906	106	68	1	1	106	428	532	2.39e-13	65.1
Msa0125890	AT1G50700.1	33.962	106	69	1	1	106	367	471	4.57e-13	64.3
Msa0125890	AT4G04710.4	37.037	108	65	2	1	106	339	445	4.91e-13	64.3
Msa0125890	AT5G12480.2	33.962	106	69	1	1	106	259	363	1.75e-12	62.8
Msa0125890	AT5G12480.1	33.962	106	69	1	1	106	353	457	1.97e-12	62.4
Msa0125890	AT2G15680.1	33.945	109	70	1	5	113	43	149	2.15e-12	60.8
Msa0125890	AT2G31500.1	34.314	102	66	1	5	106	364	464	2.49e-12	62.4
Msa0125890	AT2G36180.1	39.216	102	59	2	15	113	3	104	3.68e-12	59.3
Msa0125890	AT3G50770.1	32.456	114	69	3	2	110	57	167	3.75e-12	60.5
Msa0125890	AT4G12860.1	35.052	97	63	0	17	113	10	106	5.08e-12	59.3
Msa0125890	AT4G12860.1	50.000	60	28	1	16	73	82	141	7.57e-11	56.2
Msa0125890	AT5G17470.1	33.663	101	65	1	15	113	5	105	5.16e-12	58.9
Msa0125890	AT1G74740.1	31.132	106	72	1	1	106	353	457	6.90e-12	60.8
Msa0125890	AT4G20780.1	33.621	116	57	2	17	113	34	148	1.68e-11	58.5
Msa0125890	AT3G03400.1	32.323	99	65	1	17	113	10	108	1.75e-11	57.4
Msa0125890	AT5G19450.2	33.645	107	69	2	1	106	351	456	6.13e-11	58.2
Msa0125890	AT5G19450.1	33.645	107	69	2	1	106	351	456	6.13e-11	58.2
Msa0125890	AT3G07490.1	50.000	60	28	1	16	73	82	141	8.84e-11	55.8

Find 27 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGATGAGTTCTTGAACTTGA+TGG	0.326901	1_3:-54694313	Msa0125890:CDS
AGCCACTGTTATCAGGTCAT+TGG	0.372626	1_3:-54694412	Msa0125890:CDS
GAATAGAGAAAGAGAATAAG+AGG	0.372864	1_3:+54694686	None:intergenic
TTTAGTTTGTTTGACAAAGA+TGG	0.393112	1_3:-54694572	Msa0125890:CDS
GGAGCTTAGAGAGGCTTTCA+AGG	0.423469	1_3:-54694093	Msa0125890:CDS
GTCTTTGACAAAGATCAAAA+TGG	0.424272	1_3:-54694071	Msa0125890:CDS
CAAGAACTCATCAAATTCAA+TGG	0.434228	1_3:+54694323	None:intergenic
AAGAATTAGCCACTGTTATC+AGG	0.445790	1_3:-54694419	Msa0125890:CDS
CAACAATTTGTTCTTCACTA+AGG	0.446590	1_3:+54694609	None:intergenic
TCTTGTAGCTCTTCTTCAGT+GGG	0.469600	1_3:+54694381	None:intergenic
AGTTCTTGAACTTGATGGCT+AGG	0.482060	1_3:-54694308	Msa0125890:CDS
ATCTTGTAGCTCTTCTTCAG+TGG	0.512984	1_3:+54694380	None:intergenic
AATAGAGAAAGAGAATAAGA+GGG	0.527814	1_3:+54694687	None:intergenic
ATCTTTGTCAAACAAACTAA+AGG	0.531026	1_3:+54694574	None:intergenic
ACAAATTGTTGATTTCAAAG+AGG	0.544777	1_3:-54694597	Msa0125890:CDS
TCTTTGAGAGAGAAATAGAG+AGG	0.547431	1_3:+54694654	None:intergenic
CATTTAGGACACTGATGCAG+AGG	0.570696	1_3:-54694117	Msa0125890:intron
GAAGTTGATGCAGATGGCAA+TGG	0.578787	1_3:-54694348	Msa0125890:CDS
CTCAAAGACAAAACATACCA+TGG	0.585099	1_3:-54694639	Msa0125890:exon
TTGTTTGACAAAGATGGAGA+TGG	0.596377	1_3:-54694566	Msa0125890:intron
TTCACTAAGGACATGTGCCA+TGG	0.599624	1_3:+54694622	None:intergenic
TTAGGACACTGATGCAGAGG+AGG	0.624491	1_3:-54694114	Msa0125890:intron
TGCAGAGGAGGAGCTTAGAG+AGG	0.630033	1_3:-54694102	Msa0125890:CDS
ATAAGTGAAGTTGATGCAGA+TGG	0.649786	1_3:-54694354	Msa0125890:CDS
TGGCTATATATCAGCCAGTG+AGG	0.688712	1_3:-54694051	Msa0125890:CDS
GCAAACAGGTTGCATTACTG+TGG	0.701892	1_3:-54694442	Msa0125890:intron
ATCCAATGACCTGATAACAG+TGG	0.720716	1_3:+54694410	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAAATAAATAATGAATAGAA+TGG	+	chr1_3:54694429-54694448	None:intergenic	10.0%
!!!	CTGTTATTTTATTTTCATTT+AGG	-	chr1_3:54694544-54694563	Msa0125890:intron	15.0%
!!	TAAATAATGAATAGAATGGA+AGG	+	chr1_3:54694425-54694444	None:intergenic	20.0%
!!!	ACAAATTGTTGATTTCAAAG+AGG	-	chr1_3:54694079-54694098	Msa0125890:CDS	25.0%
!	ATCTTTGTCAAACAAACTAA+AGG	+	chr1_3:54694105-54694124	None:intergenic	25.0%
!!!	TTTAGTTTGTTTGACAAAGA+TGG	-	chr1_3:54694104-54694123	Msa0125890:CDS	25.0%
!	CTTTCAATATCAAAGTTCTA+AGG	-	chr1_3:54694459-54694478	Msa0125890:intron	25.0%
!!	AACAATTTTATATACCTCAC+TGG	+	chr1_3:54694642-54694661	None:intergenic	25.0%
!	CAACAATTTGTTCTTCACTA+AGG	+	chr1_3:54694070-54694089	None:intergenic	30.0%
	GTGATGAGAATTCTGTTAAA+AGG	+	chr1_3:54694150-54694169	None:intergenic	30.0%
	TCATACATCATCATATGCAT+AGG	-	chr1_3:54694172-54694191	Msa0125890:intron	30.0%
	CAAGAACTCATCAAATTCAA+TGG	+	chr1_3:54694356-54694375	None:intergenic	30.0%
!!	ATCAAAGTTCTAAGGTCTAT+AGG	-	chr1_3:54694467-54694486	Msa0125890:intron	30.0%
	CAATAACCAAAGACTAAGTT+TGG	-	chr1_3:54694519-54694538	Msa0125890:intron	30.0%
	GTCTTTGACAAAGATCAAAA+TGG	-	chr1_3:54694605-54694624	Msa0125890:CDS	30.0%
!	TCTTTGAGAGAGAAATAGAG+AGG	+	chr1_3:54694025-54694044	None:intergenic	35.0%
	CTCAAAGACAAAACATACCA+TGG	-	chr1_3:54694037-54694056	Msa0125890:CDS	35.0%
	TTGTTTGACAAAGATGGAGA+TGG	-	chr1_3:54694110-54694129	Msa0125890:CDS	35.0%
	ATCTTGTTGAATGTGCAAAC+AGG	-	chr1_3:54694220-54694239	Msa0125890:intron	35.0%
	AAGAATTAGCCACTGTTATC+AGG	-	chr1_3:54694257-54694276	Msa0125890:intron	35.0%
!!	ATAAGTGAAGTTGATGCAGA+TGG	-	chr1_3:54694322-54694341	Msa0125890:CDS	35.0%
	TGATGAGTTCTTGAACTTGA+TGG	-	chr1_3:54694363-54694382	Msa0125890:CDS	35.0%
!	ACAGAACCAAACTTAGTCTT+TGG	+	chr1_3:54694528-54694547	None:intergenic	35.0%
	ATCCAATGACCTGATAACAG+TGG	+	chr1_3:54694269-54694288	None:intergenic	40.0%
	TCTTGTAGCTCTTCTTCAGT+GGG	+	chr1_3:54694298-54694317	None:intergenic	40.0%
	ATCTTGTAGCTCTTCTTCAG+TGG	+	chr1_3:54694299-54694318	None:intergenic	40.0%
!	AGTTCTTGAACTTGATGGCT+AGG	-	chr1_3:54694368-54694387	Msa0125890:CDS	40.0%
	TTCACTAAGGACATGTGCCA+TGG	+	chr1_3:54694057-54694076	None:intergenic	45.0%
	GCAAACAGGTTGCATTACTG+TGG	-	chr1_3:54694234-54694253	Msa0125890:intron	45.0%
	AGCCACTGTTATCAGGTCAT+TGG	-	chr1_3:54694264-54694283	Msa0125890:intron	45.0%
!!	GAAGTTGATGCAGATGGCAA+TGG	-	chr1_3:54694328-54694347	Msa0125890:CDS	45.0%
!	CATTTAGGACACTGATGCAG+AGG	-	chr1_3:54694559-54694578	Msa0125890:intron	45.0%
	TGGCTATATATCAGCCAGTG+AGG	-	chr1_3:54694625-54694644	Msa0125890:exon	45.0%
	TTAGGACACTGATGCAGAGG+AGG	-	chr1_3:54694562-54694581	Msa0125890:intron	50.0%
	GGAGCTTAGAGAGGCTTTCA+AGG	-	chr1_3:54694583-54694602	Msa0125890:CDS	50.0%
	TGCAGAGGAGGAGCTTAGAG+AGG	-	chr1_3:54694574-54694593	Msa0125890:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	54693991	54694707	54693991	ID=Msa0125890;Name=Msa0125890
chr1_3	mRNA	54693991	54694707	54693991	ID=Msa0125890-mRNA-1;Parent=Msa0125890;Name=Msa0125890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=65\|1\|1\|1\|1\|1\|3\|34\|113
chr1_3	exon	54693991	54694132	54693991	ID=Msa0125890-mRNA-1:exon:16884;Parent=Msa0125890-mRNA-1
chr1_3	exon	54694299	54694456	54694299	ID=Msa0125890-mRNA-1:exon:16883;Parent=Msa0125890-mRNA-1
chr1_3	exon	54694567	54694707	54694567	ID=Msa0125890-mRNA-1:exon:16882;Parent=Msa0125890-mRNA-1
chr1_3	five_prime_UTR	54694643	54694707	54694643	ID=Msa0125890-mRNA-1:five_prime_utr;Parent=Msa0125890-mRNA-1
chr1_3	CDS	54694567	54694642	54694567	ID=Msa0125890-mRNA-1:cds;Parent=Msa0125890-mRNA-1
chr1_3	CDS	54694299	54694456	54694299	ID=Msa0125890-mRNA-1:cds;Parent=Msa0125890-mRNA-1
chr1_3	CDS	54694025	54694132	54694025	ID=Msa0125890-mRNA-1:cds;Parent=Msa0125890-mRNA-1
chr1_3	three_prime_UTR	54693991	54694024	54693991	ID=Msa0125890-mRNA-1:three_prime_utr;Parent=Msa0125890-mRNA-1

Gene Sequence	>Msa0125890 ATGGCACATGTCCTTAGTGAAGAACAAATTGTTGATTTCAAAGAGGCCTTTAGTTTGTTTGACAAAGATGGAGATGGTTGCATTACTGTGGAAGAATTAGCCACTGTTATCAGGTCATTGGATCAGAATCCCACTGAAGAAGAGCTACAAGATATGATAAGTGAAGTTGATGCAGATGGCAATGGAACCATTGAATTTGATGAGTTCTTGAACTTGATGGCTAGGAAAATGAAAGACACTGATGCAGAGGAGGAGCTTAGAGAGGCTTTCAAGGTCTTTGACAAAGATCAAAATGGCTATATATCAGCCAGTGAGGTATATAAAATTGTTTCTATTTTGTAA
Protein sequence	>Msa0125890 MAHVLSEEQIVDFKEAFSLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLNLMARKMKDTDAEEELREAFKVFDKDQNGYISASEVYKIVSIL*