Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568110 | XP_003630068.1 | 99.133 | 577 | 4 | 1 | 1 | 576 | 1 | 577 | 0.0 | 1189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568110 | sp|P14133|ASO_CUCSA | 51.413 | 566 | 261 | 7 | 16 | 569 | 14 | 577 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568110 | G7LAE5 | 99.133 | 577 | 4 | 1 | 1 | 576 | 1 | 577 | 0.0 | 1189 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014280 | Msa0568110 | 0.827811 | 1.273214e-54 | -8.615850e-47 |
| Msa0026420 | Msa0568110 | 0.831799 | 1.359897e-55 | -8.615850e-47 |
| Msa0030800 | Msa0568110 | 0.874674 | 5.617030e-68 | -8.615850e-47 |
| Msa0035790 | Msa0568110 | 0.828447 | 8.946879e-55 | -8.615850e-47 |
| Msa0046680 | Msa0568110 | 0.853159 | 2.872249e-61 | -8.615850e-47 |
| Msa0051480 | Msa0568110 | 0.865158 | 7.234986e-65 | -8.615850e-47 |
| Msa0051620 | Msa0568110 | 0.836222 | 1.061723e-56 | -8.615850e-47 |
| Msa0051730 | Msa0568110 | 0.831913 | 1.274882e-55 | -8.615850e-47 |
| Msa0071470 | Msa0568110 | 0.801262 | 9.781047e-49 | -8.615850e-47 |
| Msa0076640 | Msa0568110 | 0.806849 | 6.736425e-50 | -8.615850e-47 |
| Msa0078210 | Msa0568110 | 0.868748 | 5.185120e-66 | -8.615850e-47 |
| Msa0083890 | Msa0568110 | 0.804659 | 1.942410e-49 | -8.615850e-47 |
| Msa0086360 | Msa0568110 | 0.821228 | 4.514674e-53 | -8.615850e-47 |
| Msa0089860 | Msa0568110 | 0.802739 | 4.863377e-49 | -8.615850e-47 |
| Msa0107830 | Msa0568110 | 0.825603 | 4.284765e-54 | -8.615850e-47 |
| Msa0125890 | Msa0568110 | 0.832183 | 1.092919e-55 | -8.615850e-47 |
| Msa0129290 | Msa0568110 | 0.845238 | 4.601446e-59 | -8.615850e-47 |
| Msa0143640 | Msa0568110 | 0.844816 | 5.982146e-59 | -8.615850e-47 |
| Msa0143830 | Msa0568110 | 0.810885 | 9.225010e-51 | -8.615850e-47 |
| Msa0146090 | Msa0568110 | 0.816869 | 4.426786e-52 | -8.615850e-47 |
| Msa0146200 | Msa0568110 | 0.866368 | 3.000393e-65 | -8.615850e-47 |
| Msa0162680 | Msa0568110 | 0.871700 | 5.596321e-67 | -8.615850e-47 |
| Msa0164350 | Msa0568110 | 0.807376 | 5.208923e-50 | -8.615850e-47 |
| Msa0179830 | Msa0568110 | 0.800301 | 1.537119e-48 | -8.615850e-47 |
| Msa0185100 | Msa0568110 | 0.838918 | 2.161146e-57 | -8.615850e-47 |
| Msa0191470 | Msa0568110 | 0.801706 | 7.934550e-49 | -8.615850e-47 |
| Msa0196420 | Msa0568110 | 0.835878 | 1.298067e-56 | -8.615850e-47 |
| Msa0200090 | Msa0568110 | 0.831875 | 1.302373e-55 | -8.615850e-47 |
| Msa0202380 | Msa0568110 | 0.818991 | 1.467819e-52 | -8.615850e-47 |
| Msa0204170 | Msa0568110 | 0.825003 | 5.939295e-54 | -8.615850e-47 |
| Msa0207930 | Msa0568110 | 0.864166 | 1.478571e-64 | -8.615850e-47 |
| Msa0207970 | Msa0568110 | 0.827333 | 1.657745e-54 | -8.615850e-47 |
| Msa0238330 | Msa0568110 | 0.843425 | 1.412196e-58 | -8.615850e-47 |
| Msa0378320 | Msa0568110 | 0.806373 | 8.488136e-50 | -8.615850e-47 |
| Msa0385320 | Msa0568110 | 0.831433 | 1.674139e-55 | -8.615850e-47 |
| Msa0389710 | Msa0568110 | 0.800385 | 1.477746e-48 | -8.615850e-47 |
| Msa0390160 | Msa0568110 | 0.803485 | 3.408169e-49 | -8.615850e-47 |
| Msa0390170 | Msa0568110 | 0.810953 | 8.918901e-51 | -8.615850e-47 |
| Msa0390200 | Msa0568110 | 0.835440 | 1.676026e-56 | -8.615850e-47 |
| Msa0393100 | Msa0568110 | 0.832206 | 1.078955e-55 | -8.615850e-47 |
| Msa0397200 | Msa0568110 | 0.801080 | 1.066060e-48 | -8.615850e-47 |
| Msa0400010 | Msa0568110 | 0.811340 | 7.352989e-51 | -8.615850e-47 |
| Msa0402800 | Msa0568110 | 0.804583 | 2.015269e-49 | -8.615850e-47 |
| Msa0421080 | Msa0568110 | 0.833806 | 4.315480e-56 | -8.615850e-47 |
| Msa0427660 | Msa0568110 | 0.815115 | 1.090427e-51 | -8.615850e-47 |
| Msa0438070 | Msa0568110 | 0.867361 | 1.448538e-65 | -8.615850e-47 |
| Msa0447160 | Msa0568110 | 0.842101 | 3.176148e-58 | -8.615850e-47 |
| Msa0460600 | Msa0568110 | 0.853557 | 2.209068e-61 | -8.615850e-47 |
| Msa0466850 | Msa0568110 | 0.853713 | 1.992078e-61 | -8.615850e-47 |
| Msa0480540 | Msa0568110 | 0.827869 | 1.232941e-54 | -8.615850e-47 |
| Msa0480550 | Msa0568110 | 0.838445 | 2.864138e-57 | -8.615850e-47 |
| Msa0481770 | Msa0568110 | 0.843597 | 1.270801e-58 | -8.615850e-47 |
| Msa0242720 | Msa0568110 | 0.801359 | 9.346449e-49 | -8.615850e-47 |
| Msa0267900 | Msa0568110 | 0.865852 | 4.372411e-65 | -8.615850e-47 |
| Msa0271700 | Msa0568110 | 0.861951 | 7.151091e-64 | -8.615850e-47 |
| Msa0271720 | Msa0568110 | 0.863333 | 2.683302e-64 | -8.615850e-47 |
| Msa0273070 | Msa0568110 | 0.833064 | 6.607541e-56 | -8.615850e-47 |
| Msa0275730 | Msa0568110 | 0.817162 | 3.805053e-52 | -8.615850e-47 |
| Msa0310190 | Msa0568110 | 0.818197 | 2.222242e-52 | -8.615850e-47 |
| Msa0312300 | Msa0568110 | 0.806640 | 7.456298e-50 | -8.615850e-47 |
| Msa0316230 | Msa0568110 | 0.869429 | 3.117065e-66 | -8.615850e-47 |
| Msa0324810 | Msa0568110 | 0.817702 | 2.875502e-52 | -8.615850e-47 |
| Msa0324840 | Msa0568110 | 0.832696 | 8.157624e-56 | -8.615850e-47 |
| Msa0345980 | Msa0568110 | 0.824583 | 7.461382e-54 | -8.615850e-47 |
| Msa0353010 | Msa0568110 | 0.825268 | 5.141745e-54 | -8.615850e-47 |
| Msa0488580 | Msa0568110 | 0.822691 | 2.068212e-53 | -8.615850e-47 |
| Msa0493870 | Msa0568110 | 0.836248 | 1.046127e-56 | -8.615850e-47 |
| Msa0497860 | Msa0568110 | 0.817919 | 2.569146e-52 | -8.615850e-47 |
| Msa0500440 | Msa0568110 | 0.825598 | 4.296826e-54 | -8.615850e-47 |
| Msa0500770 | Msa0568110 | 0.802217 | 6.228411e-49 | -8.615850e-47 |
| Msa0508160 | Msa0568110 | 0.812628 | 3.853244e-51 | -8.615850e-47 |
| Msa0510870 | Msa0568110 | 0.824860 | 6.419864e-54 | -8.615850e-47 |
| Msa0513670 | Msa0568110 | 0.854156 | 1.485037e-61 | -8.615850e-47 |
| Msa0518490 | Msa0568110 | 0.810895 | 9.183009e-51 | -8.615850e-47 |
| Msa0522170 | Msa0568110 | 0.802120 | 6.521468e-49 | -8.615850e-47 |
| Msa0523080 | Msa0568110 | 0.823422 | 1.396896e-53 | -8.615850e-47 |
| Msa0557240 | Msa0568110 | 0.807108 | 5.938297e-50 | -8.615850e-47 |
| Msa0561830 | Msa0568110 | 0.800284 | 1.548945e-48 | -8.615850e-47 |
| Msa0565120 | Msa0568110 | 0.823589 | 1.277242e-53 | -8.615850e-47 |
| Msa0566530 | Msa0568110 | 0.814860 | 1.242193e-51 | -8.615850e-47 |
| Msa0568110 | Msa0570460 | 0.973861 | 3.761467e-137 | -8.615850e-47 |
| Msa0568110 | Msa0572700 | 0.807202 | 5.670624e-50 | -8.615850e-47 |
| Msa0568110 | Msa0580840 | 0.829770 | 4.274331e-55 | -8.615850e-47 |
| Msa0568110 | Msa0588040 | 0.811809 | 5.813366e-51 | -8.615850e-47 |
| Msa0568110 | Msa0588730 | 0.813517 | 2.459070e-51 | -8.615850e-47 |
| Msa0568110 | Msa0589000 | 0.812589 | 3.930026e-51 | -8.615850e-47 |
| Msa0568110 | Msa0589060 | 0.810117 | 1.352005e-50 | -8.615850e-47 |
| Msa0568110 | Msa0614960 | 0.815231 | 1.027824e-51 | -8.615850e-47 |
| Msa0568110 | Msa0628200 | 0.829233 | 5.771461e-55 | -8.615850e-47 |
| Msa0568110 | Msa0629030 | 0.812177 | 4.833616e-51 | -8.615850e-47 |
| Msa0568110 | Msa0629040 | 0.827935 | 1.188350e-54 | -8.615850e-47 |
| Msa0568110 | Msa0651820 | 0.810274 | 1.250654e-50 | -8.615850e-47 |
| Msa0568110 | Msa0652590 | 0.840362 | 9.102055e-58 | -8.615850e-47 |
| Msa0568110 | Msa0652600 | 0.839821 | 1.259659e-57 | -8.615850e-47 |
| Msa0568110 | Msa0652610 | 0.831776 | 1.378207e-55 | -8.615850e-47 |
| Msa0568110 | Msa0657260 | 0.846085 | 2.710765e-59 | -8.615850e-47 |
| Msa0568110 | Msa0657340 | 0.803346 | 3.642239e-49 | -8.615850e-47 |
| Msa0568110 | Msa0661330 | 0.816993 | 4.153088e-52 | -8.615850e-47 |
| Msa0568110 | Msa0666580 | 0.817586 | 3.054053e-52 | -8.615850e-47 |
| Msa0568110 | Msa0675590 | 0.814188 | 1.749720e-51 | -8.615850e-47 |
| Msa0568110 | Msa0694320 | 0.821701 | 3.509899e-53 | -8.615850e-47 |
| Msa0568110 | Msa0699170 | 0.807608 | 4.652407e-50 | -8.615850e-47 |
| Msa0568110 | Msa0701490 | 0.861019 | 1.376604e-63 | -8.615850e-47 |
| Msa0568110 | Msa0701560 | 0.858398 | 8.467806e-63 | -8.615850e-47 |
| Msa0568110 | Msa0704560 | 0.883914 | 2.997652e-71 | -8.615850e-47 |
| Msa0568110 | Msa0716620 | 0.841899 | 3.592131e-58 | -8.615850e-47 |
| Msa0568110 | Msa0738680 | 0.806128 | 9.560745e-50 | -8.615850e-47 |
| Msa0568110 | Msa0740630 | 0.817771 | 2.773411e-52 | -8.615850e-47 |
| Msa0568110 | Msa0744550 | 0.830269 | 3.229710e-55 | -8.615850e-47 |
| Msa0568110 | Msa0744560 | 0.838306 | 3.109742e-57 | -8.615850e-47 |
| Msa0568110 | Msa0746340 | 0.840528 | 8.236009e-58 | -8.615850e-47 |
| Msa0568110 | Msa0753410 | 0.810002 | 1.431410e-50 | -8.615850e-47 |
| Msa0568110 | Msa0772350 | 0.837031 | 6.606005e-57 | -8.615850e-47 |
| Msa0568110 | Msa0793270 | 0.809681 | 1.678103e-50 | -8.615850e-47 |
| Msa0568110 | Msa0794200 | 0.807551 | 4.783959e-50 | -8.615850e-47 |
| Msa0568110 | Msa0795320 | 0.850152 | 2.042298e-60 | -8.615850e-47 |
| Msa0568110 | Msa0819150 | 0.803300 | 3.722972e-49 | -8.615850e-47 |
| Msa0568110 | Msa0820880 | 0.819947 | 8.886421e-53 | -8.615850e-47 |
| Msa0568110 | Msa0826360 | 0.839123 | 1.912551e-57 | -8.615850e-47 |
| Msa0568110 | Msa0826370 | 0.824673 | 7.106886e-54 | -8.615850e-47 |
| Msa0568110 | Msa0837550 | 0.820333 | 7.250353e-53 | -8.615850e-47 |
| Msa0568110 | Msa0839530 | 0.806420 | 8.299198e-50 | -8.615850e-47 |
| Msa0568110 | Msa0859040 | 0.813579 | 2.382830e-51 | -8.615850e-47 |
| Msa0568110 | Msa0865810 | 0.824546 | 7.612718e-54 | -8.615850e-47 |
| Msa0568110 | Msa0865820 | 0.814793 | 1.285628e-51 | -8.615850e-47 |
| Msa0568110 | Msa0865830 | 0.852684 | 3.929019e-61 | -8.615850e-47 |
| Msa0568110 | Msa0874750 | 0.807293 | 5.424636e-50 | -8.615850e-47 |
| Msa0568110 | Msa0921790 | 0.809813 | 1.571889e-50 | -8.615850e-47 |
| Msa0568110 | Msa0945320 | 0.827852 | 1.244400e-54 | -8.615850e-47 |
| Msa0568110 | Msa0945330 | 0.835507 | 1.612115e-56 | -8.615850e-47 |
| Msa0568110 | Msa0960580 | 0.814822 | 1.266880e-51 | -8.615850e-47 |
| Msa0568110 | Msa0976400 | 0.821491 | 3.924494e-53 | -8.615850e-47 |
| Msa0568110 | Msa0985380 | 0.822672 | 2.089821e-53 | -8.615850e-47 |
| Msa0568110 | Msa1023430 | 0.814516 | 1.480621e-51 | -8.615850e-47 |
| Msa0568110 | Msa1027910 | 0.848305 | 6.671306e-60 | -8.615850e-47 |
| Msa0568110 | Msa1030210 | 0.871934 | 4.679458e-67 | -8.615850e-47 |
| Msa0568110 | Msa1031780 | 0.829031 | 6.459971e-55 | -8.615850e-47 |
| Msa0568110 | Msa1035050 | 0.813127 | 2.995418e-51 | -8.615850e-47 |
| Msa0568110 | Msa1040330 | 0.814988 | 1.163547e-51 | -8.615850e-47 |
| Msa0568110 | Msa1061840 | 0.825601 | 4.288912e-54 | -8.615850e-47 |
| Msa0568110 | Msa1069250 | 0.867749 | 1.087536e-65 | -8.615850e-47 |
| Msa0568110 | Msa1075090 | 0.821998 | 2.997049e-53 | -8.615850e-47 |
| Msa0568110 | Msa1080650 | 0.805433 | 1.337882e-49 | -8.615850e-47 |
| Msa0568110 | Msa1082080 | 0.812048 | 5.158591e-51 | -8.615850e-47 |
| Msa0568110 | Msa1084890 | 0.822574 | 2.202446e-53 | -8.615850e-47 |
| Msa0568110 | Msa1102210 | 0.806015 | 1.009715e-49 | -8.615850e-47 |
| Msa0568110 | Msa1107510 | 0.812692 | 3.730376e-51 | -8.615850e-47 |
| Msa0568110 | Msa1110900 | 0.839161 | 1.869343e-57 | -8.615850e-47 |
| Msa0568110 | Msa1118720 | 0.818119 | 2.314485e-52 | -8.615850e-47 |
| Msa0568110 | Msa1120580 | 0.851862 | 6.732413e-61 | -8.615850e-47 |
| Msa0568110 | Msa1126440 | 0.802735 | 4.872120e-49 | -8.615850e-47 |
| Msa0568110 | Msa1127940 | 0.825400 | 4.785557e-54 | -8.615850e-47 |
| Msa0568110 | Msa1131120 | 0.830748 | 2.465632e-55 | -8.615850e-47 |
| Msa0568110 | Msa1137750 | 0.826472 | 2.661997e-54 | -8.615850e-47 |
| Msa0568110 | Msa1151070 | 0.815980 | 7.001168e-52 | -8.615850e-47 |
| Msa0568110 | Msa1157110 | 0.840338 | 9.233729e-58 | -8.615850e-47 |
| Msa0568110 | Msa1162430 | 0.804050 | 2.601442e-49 | -8.615850e-47 |
| Msa0568110 | Msa1165670 | 0.809082 | 2.256234e-50 | -8.615850e-47 |
| Msa0568110 | Msa1165860 | 0.827521 | 1.494536e-54 | -8.615850e-47 |
| Msa0568110 | Msa1174280 | 0.811487 | 6.833058e-51 | -8.615850e-47 |
| Msa0568110 | Msa1202110 | 0.819857 | 9.315866e-53 | -8.615850e-47 |
| Msa0568110 | Msa1211610 | 0.835406 | 1.709113e-56 | -8.615850e-47 |
| Msa0568110 | Msa1223560 | 0.876139 | 1.770184e-68 | -8.615850e-47 |
| Msa0568110 | Msa1223990 | 0.805605 | 1.231440e-49 | -8.615850e-47 |
| Msa0568110 | Msa1224510 | 0.828649 | 7.994126e-55 | -8.615850e-47 |
| Msa0568110 | Msa1254870 | 0.819916 | 9.032668e-53 | -8.615850e-47 |
| Msa0568110 | Msa1256600 | 0.828236 | 1.005586e-54 | -8.615850e-47 |
| Msa0568110 | Msa1263500 | 0.869218 | 3.650738e-66 | -8.615850e-47 |
| Msa0568110 | Msa1264660 | 0.800742 | 1.249450e-48 | -8.615850e-47 |
| Msa0568110 | Msa1269200 | 0.806028 | 1.003620e-49 | -8.615850e-47 |
| Msa0568110 | Msa1299480 | 0.830593 | 2.691672e-55 | -8.615850e-47 |
| Msa0568110 | Msa1307930 | 0.810209 | 1.291513e-50 | -8.615850e-47 |
| Msa0568110 | Msa1328430 | 0.819883 | 9.193001e-53 | -8.615850e-47 |
| Msa0568110 | Msa1331950 | 0.808272 | 3.359867e-50 | -8.615850e-47 |
| Msa0568110 | Msa1333700 | 0.842352 | 2.724940e-58 | -8.615850e-47 |
| Msa0568110 | Msa1346010 | 0.811709 | 6.113924e-51 | -8.615850e-47 |
| Msa0568110 | Msa1349830 | 0.821944 | 3.084167e-53 | -8.615850e-47 |
| Msa0568110 | Msa1359770 | 0.804714 | 1.892264e-49 | -8.615850e-47 |
| Msa0568110 | Msa1361710 | 0.832938 | 7.102632e-56 | -8.615850e-47 |
| Msa0568110 | Msa1366480 | 0.819865 | 9.279946e-53 | -8.615850e-47 |
| Msa0568110 | Msa1377050 | 0.864513 | 1.151829e-64 | -8.615850e-47 |
| Msa0568110 | Msa1383790 | 0.823906 | 1.076250e-53 | -8.615850e-47 |
| Msa0568110 | Msa1387610 | 0.874930 | 4.592731e-68 | -8.615850e-47 |
| Msa0568110 | Msa1396160 | 0.829697 | 4.452875e-55 | -8.615850e-47 |
| Msa0568110 | Msa1398120 | 0.864447 | 1.208157e-64 | -8.615850e-47 |
| Msa0568110 | Msa1401110 | 0.832327 | 1.007048e-55 | -8.615850e-47 |
| Msa0568110 | Msa1405500 | 0.835540 | 1.581051e-56 | -8.615850e-47 |
| Msa0568110 | Msa1427000 | 0.885328 | 8.942363e-72 | -8.615850e-47 |
| Msa0568110 | Msa1432180 | 0.807355 | 5.263512e-50 | -8.615850e-47 |
| Msa0568110 | Msa1438160 | 0.877767 | 4.825539e-69 | -8.615850e-47 |
| Msa0568110 | Msa1439780 | 0.883335 | 4.893673e-71 | -8.615850e-47 |
| Msa0568110 | Msa1449470 | 0.877538 | 5.799025e-69 | -8.615850e-47 |
| Msa0568110 | Msa1453600 | 0.838967 | 2.099568e-57 | -8.615850e-47 |
| Msa0568110 | Msa1459920 | 0.816150 | 6.414209e-52 | -8.615850e-47 |
| Msa0568110 | Msa1459930 | 0.845433 | 4.073559e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568110 | MtrunA17_Chr8g0382691 | 99.133 | 577 | 4 | 1 | 1 | 576 | 1 | 577 | 0.0 | 1189 |
| Msa0568110 | MtrunA17_Chr3g0118331 | 50.788 | 571 | 265 | 9 | 13 | 573 | 5 | 569 | 0.0 | 583 |
| Msa0568110 | MtrunA17_Chr3g0118321 | 48.951 | 572 | 277 | 7 | 6 | 569 | 1 | 565 | 0.0 | 573 |
| Msa0568110 | MtrunA17_Chr3g0118351 | 47.493 | 339 | 150 | 7 | 259 | 573 | 6 | 340 | 1.89e-100 | 308 |
| Msa0568110 | MtrunA17_Chr5g0404341 | 34.315 | 577 | 326 | 19 | 1 | 552 | 1 | 549 | 6.21e-86 | 278 |
| Msa0568110 | MtrunA17_Chr5g0436461 | 34.234 | 555 | 317 | 16 | 16 | 549 | 5 | 532 | 1.34e-84 | 274 |
| Msa0568110 | MtrunA17_Chr5g0404361 | 33.569 | 566 | 330 | 14 | 4 | 549 | 50 | 589 | 3.33e-83 | 271 |
| Msa0568110 | MtrunA17_Chr5g0429511 | 34.111 | 557 | 320 | 16 | 13 | 549 | 7 | 536 | 2.53e-79 | 260 |
| Msa0568110 | MtrunA17_Chr7g0237441 | 31.926 | 592 | 332 | 21 | 14 | 564 | 9 | 570 | 3.32e-78 | 258 |
| Msa0568110 | MtrunA17_Chr3g0104061 | 33.457 | 541 | 311 | 16 | 30 | 549 | 22 | 534 | 3.45e-77 | 254 |
| Msa0568110 | MtrunA17_Chr7g0237491 | 32.826 | 591 | 322 | 23 | 14 | 561 | 9 | 567 | 1.28e-76 | 253 |
| Msa0568110 | MtrunA17_Chr5g0437681 | 31.641 | 591 | 335 | 20 | 15 | 566 | 7 | 567 | 4.84e-76 | 251 |
| Msa0568110 | MtrunA17_Chr7g0238351 | 32.215 | 596 | 340 | 21 | 4 | 562 | 1 | 569 | 1.20e-75 | 251 |
| Msa0568110 | MtrunA17_Chr7g0238941 | 32.925 | 571 | 319 | 21 | 34 | 566 | 34 | 578 | 1.13e-74 | 248 |
| Msa0568110 | MtrunA17_Chr3g0114211 | 32.198 | 587 | 319 | 19 | 14 | 561 | 13 | 559 | 4.25e-74 | 246 |
| Msa0568110 | MtrunA17_Chr2g0278811 | 31.597 | 595 | 343 | 16 | 3 | 549 | 7 | 585 | 8.65e-73 | 244 |
| Msa0568110 | MtrunA17_Chr7g0238981 | 31.915 | 611 | 332 | 24 | 2 | 560 | 6 | 584 | 5.18e-72 | 241 |
| Msa0568110 | MtrunA17_Chr8g0346581 | 31.579 | 551 | 330 | 15 | 22 | 549 | 23 | 549 | 1.16e-70 | 237 |
| Msa0568110 | MtrunA17_Chr5g0431581 | 31.716 | 577 | 334 | 20 | 17 | 563 | 5 | 551 | 1.07e-69 | 234 |
| Msa0568110 | MtrunA17_Chr4g0031901 | 30.833 | 600 | 341 | 22 | 1 | 560 | 6 | 571 | 9.63e-68 | 230 |
| Msa0568110 | MtrunA17_Chr7g0240991 | 29.592 | 588 | 339 | 18 | 18 | 565 | 10 | 562 | 5.33e-66 | 225 |
| Msa0568110 | MtrunA17_Chr7g0240971 | 29.913 | 575 | 336 | 20 | 15 | 550 | 3 | 549 | 2.94e-65 | 223 |
| Msa0568110 | MtrunA17_Chr4g0008521 | 31.725 | 539 | 303 | 20 | 49 | 550 | 41 | 551 | 8.09e-65 | 222 |
| Msa0568110 | MtrunA17_Chr3g0118341 | 53.571 | 168 | 76 | 1 | 31 | 196 | 23 | 190 | 3.83e-61 | 201 |
| Msa0568110 | MtrunA17_Chr8g0374271 | 28.295 | 569 | 328 | 20 | 28 | 571 | 25 | 538 | 3.47e-55 | 195 |
| Msa0568110 | MtrunA17_Chr5g0402831 | 28.142 | 565 | 331 | 16 | 28 | 571 | 25 | 535 | 5.13e-53 | 189 |
| Msa0568110 | MtrunA17_Chr4g0075071 | 27.257 | 587 | 340 | 16 | 14 | 571 | 11 | 539 | 1.67e-52 | 188 |
| Msa0568110 | MtrunA17_Chr4g0024861 | 28.219 | 567 | 320 | 16 | 34 | 571 | 27 | 535 | 7.91e-52 | 186 |
| Msa0568110 | MtrunA17_Chr3g0079321 | 27.444 | 583 | 359 | 17 | 17 | 570 | 8 | 555 | 8.41e-52 | 187 |
| Msa0568110 | MtrunA17_Chr4g0056511 | 29.472 | 587 | 352 | 18 | 8 | 568 | 1 | 551 | 1.74e-50 | 183 |
| Msa0568110 | MtrunA17_Chr3g0143671 | 26.094 | 594 | 346 | 18 | 10 | 571 | 6 | 538 | 1.97e-50 | 182 |
| Msa0568110 | MtrunA17_Chr1g0157341 | 27.136 | 597 | 338 | 19 | 11 | 571 | 2 | 537 | 1.02e-49 | 180 |
| Msa0568110 | MtrunA17_Chr2g0322441 | 26.846 | 596 | 346 | 15 | 8 | 571 | 1 | 538 | 1.08e-49 | 180 |
| Msa0568110 | MtrunA17_Chr3g0121161 | 28.082 | 584 | 351 | 18 | 9 | 570 | 44 | 580 | 7.23e-49 | 179 |
| Msa0568110 | MtrunA17_Chr3g0121151 | 28.082 | 584 | 351 | 18 | 9 | 570 | 44 | 580 | 8.48e-49 | 178 |
| Msa0568110 | MtrunA17_Chr4g0038671 | 26.207 | 580 | 351 | 16 | 14 | 571 | 13 | 537 | 7.53e-48 | 175 |
| Msa0568110 | MtrunA17_Chr3g0121171 | 28.082 | 584 | 351 | 18 | 9 | 570 | 579 | 1115 | 8.95e-48 | 180 |
| Msa0568110 | MtrunA17_Chr3g0121171 | 28.315 | 558 | 334 | 17 | 35 | 570 | 27 | 540 | 1.07e-46 | 177 |
| Msa0568110 | MtrunA17_Chr3g0121171 | 27.911 | 584 | 352 | 18 | 9 | 570 | 1154 | 1690 | 1.52e-46 | 176 |
| Msa0568110 | MtrunA17_Chr3g0121171 | 26.884 | 584 | 349 | 19 | 9 | 570 | 1729 | 2256 | 2.72e-42 | 163 |
| Msa0568110 | MtrunA17_Chr4g0043261 | 28.130 | 583 | 348 | 19 | 9 | 570 | 3 | 535 | 1.70e-46 | 171 |
| Msa0568110 | MtrunA17_Chr8g0374261 | 26.632 | 582 | 342 | 19 | 15 | 570 | 13 | 535 | 3.15e-46 | 170 |
| Msa0568110 | MtrunA17_Chr7g0234061 | 28.980 | 559 | 332 | 20 | 35 | 567 | 30 | 549 | 6.64e-46 | 171 |
| Msa0568110 | MtrunA17_Chr4g0043251 | 25.480 | 573 | 373 | 13 | 14 | 570 | 7 | 541 | 4.78e-44 | 164 |
| Msa0568110 | MtrunA17_Chr4g0024641 | 26.378 | 508 | 297 | 15 | 87 | 569 | 1 | 456 | 6.62e-36 | 144 |
| Msa0568110 | MtrunA17_Chr3g0133861 | 32.000 | 325 | 183 | 11 | 252 | 549 | 5 | 318 | 2.09e-35 | 136 |
| Msa0568110 | MtrunA17_Chr4g0005921 | 41.615 | 161 | 90 | 2 | 389 | 549 | 379 | 535 | 2.73e-32 | 131 |
| Msa0568110 | MtrunA17_Chr3g0118931 | 50.000 | 96 | 47 | 1 | 481 | 575 | 10 | 105 | 2.48e-30 | 114 |
| Msa0568110 | MtrunA17_Chr1g0197301 | 26.875 | 320 | 202 | 8 | 236 | 544 | 4 | 302 | 7.56e-28 | 114 |
| Msa0568110 | MtrunA17_Chr5g0436431 | 41.333 | 150 | 79 | 3 | 383 | 529 | 85 | 228 | 3.12e-27 | 110 |
| Msa0568110 | MtrunA17_Chr3g0133871 | 37.423 | 163 | 96 | 5 | 15 | 173 | 13 | 173 | 2.47e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0568110 | AT4G39830.1 | 66.078 | 566 | 183 | 4 | 14 | 570 | 16 | 581 | 0.0 | 816 |
| Msa0568110 | AT4G39830.2 | 67.355 | 484 | 149 | 4 | 96 | 570 | 3 | 486 | 0.0 | 701 |
| Msa0568110 | AT4G39830.3 | 67.288 | 483 | 149 | 4 | 97 | 570 | 2 | 484 | 0.0 | 698 |
| Msa0568110 | AT4G39830.4 | 65.083 | 484 | 147 | 5 | 96 | 570 | 3 | 473 | 0.0 | 664 |
| Msa0568110 | AT5G21105.1 | 50.089 | 563 | 268 | 7 | 20 | 573 | 24 | 582 | 0.0 | 569 |
| Msa0568110 | AT5G21100.1 | 48.561 | 556 | 274 | 7 | 26 | 573 | 16 | 567 | 0.0 | 555 |
| Msa0568110 | AT5G21105.3 | 48.473 | 524 | 257 | 7 | 15 | 529 | 19 | 538 | 3.10e-173 | 502 |
| Msa0568110 | AT5G21105.2 | 48.958 | 384 | 185 | 6 | 197 | 573 | 12 | 391 | 7.32e-121 | 363 |
| Msa0568110 | AT5G03260.1 | 34.838 | 554 | 319 | 14 | 14 | 549 | 6 | 535 | 2.36e-87 | 281 |
| Msa0568110 | AT5G58910.2 | 32.981 | 567 | 326 | 17 | 12 | 549 | 4 | 545 | 2.06e-82 | 269 |
| Msa0568110 | AT5G58910.3 | 32.981 | 567 | 325 | 18 | 12 | 549 | 4 | 544 | 2.32e-81 | 266 |
| Msa0568110 | AT2G38080.1 | 33.454 | 553 | 327 | 13 | 17 | 549 | 5 | 536 | 5.24e-81 | 265 |
| Msa0568110 | AT1G18140.1 | 31.497 | 581 | 324 | 20 | 27 | 564 | 22 | 571 | 6.00e-77 | 254 |
| Msa0568110 | AT5G05390.1 | 31.874 | 571 | 316 | 19 | 16 | 549 | 9 | 543 | 1.42e-76 | 253 |
| Msa0568110 | AT5G01050.1 | 30.862 | 580 | 331 | 21 | 20 | 561 | 13 | 560 | 4.02e-74 | 247 |
| Msa0568110 | AT5G60020.1 | 31.597 | 576 | 327 | 19 | 11 | 545 | 2 | 551 | 6.08e-74 | 246 |
| Msa0568110 | AT5G09360.1 | 32.812 | 576 | 320 | 21 | 19 | 564 | 21 | 559 | 2.14e-73 | 245 |
| Msa0568110 | AT2G29130.1 | 31.504 | 565 | 328 | 18 | 14 | 545 | 9 | 547 | 2.98e-73 | 244 |
| Msa0568110 | AT2G46570.1 | 31.162 | 568 | 329 | 18 | 13 | 549 | 11 | 547 | 8.45e-72 | 241 |
| Msa0568110 | AT5G58910.1 | 32.890 | 526 | 296 | 17 | 49 | 549 | 8 | 501 | 1.08e-71 | 239 |
| Msa0568110 | AT5G01190.1 | 33.037 | 563 | 319 | 15 | 14 | 549 | 5 | 536 | 1.54e-69 | 234 |
| Msa0568110 | AT5G48100.1 | 32.474 | 582 | 321 | 26 | 16 | 561 | 5 | 550 | 2.19e-69 | 234 |
| Msa0568110 | AT5G60020.3 | 31.784 | 538 | 300 | 19 | 49 | 545 | 8 | 519 | 7.26e-69 | 232 |
| Msa0568110 | AT5G01040.1 | 30.674 | 564 | 325 | 20 | 20 | 549 | 13 | 544 | 1.71e-68 | 232 |
| Msa0568110 | AT3G09220.1 | 30.728 | 563 | 332 | 20 | 18 | 549 | 10 | 545 | 1.49e-67 | 229 |
| Msa0568110 | AT5G60020.2 | 31.071 | 560 | 319 | 19 | 11 | 529 | 2 | 535 | 9.67e-67 | 227 |
| Msa0568110 | AT5G01190.2 | 34.034 | 523 | 287 | 15 | 54 | 549 | 31 | 522 | 5.29e-66 | 224 |
| Msa0568110 | AT5G07130.1 | 29.661 | 590 | 346 | 20 | 19 | 566 | 7 | 569 | 2.85e-65 | 223 |
| Msa0568110 | AT2G40370.1 | 30.189 | 583 | 328 | 20 | 14 | 549 | 8 | 558 | 2.47e-64 | 221 |
| Msa0568110 | AT2G30210.1 | 31.343 | 536 | 303 | 19 | 49 | 549 | 43 | 548 | 2.71e-63 | 218 |
| Msa0568110 | AT1G75790.1 | 29.131 | 587 | 336 | 21 | 15 | 570 | 8 | 545 | 3.27e-57 | 201 |
| Msa0568110 | AT4G12420.1 | 30.978 | 552 | 325 | 19 | 13 | 544 | 5 | 520 | 1.29e-56 | 200 |
| Msa0568110 | AT4G12420.2 | 30.978 | 552 | 325 | 19 | 13 | 544 | 5 | 520 | 1.29e-56 | 200 |
| Msa0568110 | AT5G66920.1 | 27.305 | 564 | 339 | 15 | 28 | 571 | 31 | 543 | 5.65e-55 | 195 |
| Msa0568110 | AT2G23630.2 | 28.938 | 584 | 321 | 21 | 18 | 570 | 21 | 541 | 6.10e-54 | 192 |
| Msa0568110 | AT2G23630.1 | 28.938 | 584 | 321 | 21 | 18 | 570 | 16 | 536 | 8.35e-54 | 192 |
| Msa0568110 | AT4G22010.1 | 27.807 | 579 | 342 | 17 | 17 | 571 | 9 | 535 | 1.12e-53 | 191 |
| Msa0568110 | AT2G46570.2 | 30.266 | 489 | 280 | 17 | 92 | 549 | 4 | 462 | 4.36e-53 | 188 |
| Msa0568110 | AT1G21850.1 | 27.835 | 582 | 339 | 20 | 14 | 571 | 11 | 535 | 4.09e-52 | 187 |
| Msa0568110 | AT1G55570.1 | 27.692 | 585 | 362 | 15 | 8 | 571 | 1 | 545 | 4.65e-51 | 184 |
| Msa0568110 | AT4G37160.1 | 27.148 | 582 | 347 | 17 | 13 | 570 | 10 | 538 | 4.31e-50 | 181 |
| Msa0568110 | AT1G76160.1 | 26.541 | 584 | 343 | 18 | 15 | 571 | 11 | 535 | 1.13e-49 | 180 |
| Msa0568110 | AT4G28090.1 | 28.154 | 547 | 311 | 18 | 23 | 544 | 18 | 507 | 9.26e-49 | 178 |
| Msa0568110 | AT1G21860.1 | 27.007 | 548 | 326 | 16 | 16 | 544 | 11 | 503 | 2.00e-48 | 177 |
| Msa0568110 | AT3G09220.2 | 30.021 | 473 | 274 | 18 | 108 | 549 | 2 | 448 | 3.21e-48 | 175 |
| Msa0568110 | AT5G07130.2 | 28.797 | 507 | 295 | 18 | 100 | 566 | 4 | 484 | 6.06e-48 | 174 |
| Msa0568110 | AT5G07130.3 | 28.797 | 507 | 295 | 18 | 100 | 566 | 4 | 484 | 6.06e-48 | 174 |
| Msa0568110 | AT1G41830.1 | 24.915 | 590 | 357 | 19 | 9 | 571 | 6 | 536 | 7.03e-46 | 170 |
| Msa0568110 | AT4G25240.2 | 28.055 | 581 | 356 | 18 | 15 | 570 | 11 | 554 | 2.84e-45 | 169 |
| Msa0568110 | AT4G25240.1 | 28.055 | 581 | 356 | 18 | 15 | 570 | 11 | 554 | 2.84e-45 | 169 |
| Msa0568110 | AT5G48450.2 | 27.568 | 555 | 343 | 16 | 8 | 544 | 1 | 514 | 4.83e-45 | 168 |
| Msa0568110 | AT5G48450.1 | 27.568 | 555 | 343 | 16 | 8 | 544 | 1 | 514 | 1.42e-44 | 167 |
| Msa0568110 | AT3G13390.1 | 26.868 | 562 | 340 | 16 | 35 | 571 | 29 | 544 | 2.96e-44 | 166 |
| Msa0568110 | AT5G51480.1 | 27.128 | 564 | 347 | 18 | 36 | 572 | 30 | 556 | 5.02e-44 | 166 |
| Msa0568110 | AT3G13400.2 | 26.582 | 553 | 354 | 15 | 35 | 572 | 28 | 543 | 3.37e-42 | 160 |
| Msa0568110 | AT3G13400.1 | 26.582 | 553 | 354 | 15 | 35 | 572 | 28 | 543 | 3.37e-42 | 160 |
| Msa0568110 | AT4G38420.1 | 24.957 | 581 | 359 | 19 | 16 | 569 | 12 | 542 | 3.22e-39 | 151 |
| Msa0568110 | AT1G55560.1 | 26.655 | 559 | 344 | 17 | 36 | 572 | 28 | 542 | 1.55e-36 | 144 |
| Msa0568110 | AT4G37160.2 | 26.626 | 492 | 290 | 15 | 13 | 485 | 10 | 449 | 8.28e-35 | 137 |
| Msa0568110 | AT4G38420.3 | 25.336 | 521 | 317 | 18 | 16 | 514 | 12 | 482 | 1.76e-33 | 134 |
| Msa0568110 | AT4G38420.2 | 25.407 | 492 | 296 | 17 | 16 | 485 | 12 | 454 | 8.91e-31 | 125 |
Find 147 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAATGATTACCTCTATT+TGG | 0.163643 | 4_1:-69698939 | None:intergenic |
| TCTATGTTTCTTTCTCATTC+TGG | 0.167590 | 4_1:+69697678 | Msa0568110:CDS |
| AAACTTGTTATAACCATTAA+TGG | 0.170163 | 4_1:+69697784 | Msa0568110:CDS |
| TCCTGGAGTCTTTCCATTAA+TGG | 0.200622 | 4_1:-69697797 | None:intergenic |
| CCTCAGTCACTTCTGATTCA+TGG | 0.203458 | 4_1:+69698760 | Msa0568110:intron |
| CAAAGGGAAGCAGGAGTTTA+TGG | 0.209011 | 4_1:+69698472 | Msa0568110:CDS |
| AAACATAGAAACAATAATTT+TGG | 0.223988 | 4_1:-69697664 | None:intergenic |
| ATATATCATGATGATTCTTT+TGG | 0.253206 | 4_1:-69700590 | None:intergenic |
| CTTCTAGCAATGGAATTTAT+AGG | 0.273291 | 4_1:+69700094 | Msa0568110:CDS |
| GGCACAGTATTCTTCATAAT+GGG | 0.274165 | 4_1:-69700288 | None:intergenic |
| GGCGACCTCATTGGATGGTT+TGG | 0.294439 | 4_1:-69699748 | None:intergenic |
| GAGGTTTGATTGTGTAATTT+TGG | 0.312038 | 4_1:-69699849 | None:intergenic |
| ACAAGTTTCTTATAACAATC+AGG | 0.314861 | 4_1:-69697769 | None:intergenic |
| CTGGTGTTAGACATTATAAA+TGG | 0.319055 | 4_1:+69697722 | Msa0568110:CDS |
| TATAGAGTCTCATTTCTATA+TGG | 0.319868 | 4_1:+69700383 | Msa0568110:CDS |
| CATTTGGTTGGACTGCTTTG+AGG | 0.330733 | 4_1:+69700319 | Msa0568110:CDS |
| CTATCAAAGTCATAAGAAAA+AGG | 0.331498 | 4_1:-69698526 | None:intergenic |
| ATTGGAACTCCTTGGTTTGA+TGG | 0.340104 | 4_1:+69698057 | Msa0568110:CDS |
| GGCAAAAGCAAAGGCTTCTT+AGG | 0.341672 | 4_1:+69700474 | Msa0568110:CDS |
| GGTGGAGGTGGTGGAGATGT+TGG | 0.347451 | 4_1:-69699772 | None:intergenic |
| TCCGAAAAGGGAGAGCATTC+AGG | 0.359438 | 4_1:-69698847 | None:intergenic |
| GCGACCTCATTGGATGGTTT+GGG | 0.364061 | 4_1:-69699747 | None:intergenic |
| CCCTCTTGTGCTTGAATGGT+TGG | 0.368156 | 4_1:-69697820 | None:intergenic |
| TTTATCGATTTGTTGTTGAT+AGG | 0.375099 | 4_1:+69698127 | Msa0568110:CDS |
| AGCCATCAGGTGGAGGTGTT+TGG | 0.375855 | 4_1:-69700020 | None:intergenic |
| CTTTAAGTGCAACAAGATAA+GGG | 0.376250 | 4_1:-69699975 | None:intergenic |
| TATCTTTATCATGCTCACTA+TGG | 0.377739 | 4_1:+69698445 | Msa0568110:CDS |
| GTGATCCAGTAGTTTCTTGA+TGG | 0.389887 | 4_1:-69699664 | None:intergenic |
| TGGCACAGTATTCTTCATAA+TGG | 0.391850 | 4_1:-69700289 | None:intergenic |
| TGTGCTTGAATGGTTGGTCC+TGG | 0.404124 | 4_1:-69697814 | None:intergenic |
| GGGAGGTGAAGTATGATTAT+AGG | 0.405545 | 4_1:+69697743 | Msa0568110:CDS |
| TCTTTAAGTGCAACAAGATA+AGG | 0.407309 | 4_1:-69699976 | None:intergenic |
| GCACTTAAAGAGAATATAAC+TGG | 0.408038 | 4_1:+69699988 | Msa0568110:CDS |
| ATTGTTCATAAGTACTCTTA+TGG | 0.412906 | 4_1:-69698573 | None:intergenic |
| AAGAAGGAATTGAAAGGGTT+GGG | 0.416848 | 4_1:+69700424 | Msa0568110:CDS |
| GTTTCTGCTGACAACATTTG+AGG | 0.423513 | 4_1:-69699686 | None:intergenic |
| TGCAAGGCTTTGAGTATGCC+TGG | 0.424280 | 4_1:-69699815 | None:intergenic |
| TAACACCAGCCTCAGCTTTG+TGG | 0.425338 | 4_1:-69697708 | None:intergenic |
| ATCACCCTCTTGTGCTTGAA+TGG | 0.429227 | 4_1:-69697824 | None:intergenic |
| ACACATCCATGGCATCTTCA+TGG | 0.435000 | 4_1:+69700186 | Msa0568110:CDS |
| TCCCATGCTGGTGGAGGTGG+TGG | 0.442090 | 4_1:-69699781 | None:intergenic |
| ATAGAGTCTCATTTCTATAT+GGG | 0.445190 | 4_1:+69700384 | Msa0568110:CDS |
| TAGAGATTCTTAACCACAAA+AGG | 0.447645 | 4_1:-69699592 | None:intergenic |
| ACTGTGCCAGTACACTCATT+TGG | 0.453887 | 4_1:+69700303 | Msa0568110:CDS |
| AGAACAACCCCACCTGGTTT+AGG | 0.454476 | 4_1:+69699709 | Msa0568110:CDS |
| ACTCTATCTGAGGTTGTTGG+AGG | 0.454902 | 4_1:-69699868 | None:intergenic |
| GAACCATGTCTAGATTGTTA+AGG | 0.460429 | 4_1:-69697615 | None:intergenic |
| TTATCGATTTGTTGTTGATA+GGG | 0.462550 | 4_1:+69698128 | Msa0568110:CDS |
| TAGTATTATACAAATTGTGC+TGG | 0.470771 | 4_1:+69700632 | Msa0568110:three_prime_UTR |
| GAAGCTACCTTCATCCATCA+TGG | 0.470885 | 4_1:+69700446 | Msa0568110:CDS |
| TTTCTATATGGGAATGGGAG+TGG | 0.472301 | 4_1:+69700395 | Msa0568110:CDS |
| AGCACTCAGTTTCCAAATAG+AGG | 0.474284 | 4_1:+69698927 | Msa0568110:CDS |
| TTGTCCCATGCTGGTGGAGG+TGG | 0.475191 | 4_1:-69699784 | None:intergenic |
| TGGGTACTTGGATATGGAAA+GGG | 0.475912 | 4_1:+69700219 | Msa0568110:CDS |
| TCACTTCTGATTCATGGAAA+AGG | 0.477199 | 4_1:+69698766 | Msa0568110:CDS |
| GAAGAAGGAATTGAAAGGGT+TGG | 0.486528 | 4_1:+69700423 | Msa0568110:CDS |
| TATGACAGATTGGAACTCCT+TGG | 0.490012 | 4_1:+69698049 | Msa0568110:intron |
| ACCAACCATTCAAGCACAAG+AGG | 0.491802 | 4_1:+69697819 | Msa0568110:CDS |
| TCTCATTTCTATATGGGAAT+GGG | 0.493176 | 4_1:+69700390 | Msa0568110:CDS |
| GTCTCATTTCTATATGGGAA+TGG | 0.494997 | 4_1:+69700389 | Msa0568110:CDS |
| TGAGACGACTGTTTCCGAAA+AGG | 0.499126 | 4_1:-69698860 | None:intergenic |
| TATGGAATGCAAAGGGAAGC+AGG | 0.500152 | 4_1:+69698463 | Msa0568110:CDS |
| GAGACGACTGTTTCCGAAAA+GGG | 0.501123 | 4_1:-69698859 | None:intergenic |
| ATGACTCTATCTGAGGTTGT+TGG | 0.501248 | 4_1:-69699871 | None:intergenic |
| TTCAACTTCAACTAAGCCTA+AGG | 0.502063 | 4_1:+69697635 | Msa0568110:CDS |
| GACTCAACATTGTCCCATGC+TGG | 0.505407 | 4_1:-69699793 | None:intergenic |
| AGTACTTATGAACAATCTGC+TGG | 0.505703 | 4_1:+69698580 | Msa0568110:CDS |
| CTATAGACAATGTTCGTCAT+TGG | 0.506850 | 4_1:+69699917 | Msa0568110:CDS |
| TTTGGTGAGCTTTGATTGCA+AGG | 0.510484 | 4_1:-69699831 | None:intergenic |
| CAATTACAATTTACACAATG+AGG | 0.510980 | 4_1:-69700655 | None:intergenic |
| GGAGGTGGTGGAGATGTTGG+TGG | 0.512910 | 4_1:-69699769 | None:intergenic |
| AGGTTTCGATCAGATAATCC+TGG | 0.513400 | 4_1:+69700339 | Msa0568110:CDS |
| TTGGGTACTTGGATATGGAA+AGG | 0.514165 | 4_1:+69700218 | Msa0568110:CDS |
| CAGAAAACCTTGCCATCCAT+TGG | 0.515007 | 4_1:+69697881 | Msa0568110:CDS |
| CAAGTTTCTTATAACAATCA+GGG | 0.515748 | 4_1:-69697768 | None:intergenic |
| TGATCCAGTAGTTTCTTGAT+GGG | 0.518958 | 4_1:-69699663 | None:intergenic |
| CCATTGGCATGGTATTAGAC+AGG | 0.519566 | 4_1:+69697897 | Msa0568110:CDS |
| GATGTTGGTGGCGACCTCAT+TGG | 0.527521 | 4_1:-69699757 | None:intergenic |
| CAAGATAAGGGGTGTGAGGT+AGG | 0.528066 | 4_1:-69699963 | None:intergenic |
| CGATAAACAAAGGTGTCTCC+AGG | 0.528939 | 4_1:-69698111 | None:intergenic |
| TTATTACCAAGCTTACCTGC+TGG | 0.533199 | 4_1:+69698805 | Msa0568110:CDS |
| CCTTCATCCATCATGGGTTG+TGG | 0.536511 | 4_1:+69700453 | Msa0568110:CDS |
| TGCTCACTATGGAATGCAAA+GGG | 0.536716 | 4_1:+69698456 | Msa0568110:CDS |
| CCTTGGTTTGATGGAACAGA+AGG | 0.537286 | 4_1:+69698066 | Msa0568110:CDS |
| TGCCAGTACACTCATTTGGT+TGG | 0.539639 | 4_1:+69700307 | Msa0568110:CDS |
| AAGACCCATCAAGAAACTAC+TGG | 0.542638 | 4_1:+69699659 | Msa0568110:CDS |
| AATTTCCACAAAGCTGAGGC+TGG | 0.543418 | 4_1:+69697703 | Msa0568110:CDS |
| TACCATGCCAATGGATGGCA+AGG | 0.543974 | 4_1:-69697888 | None:intergenic |
| TTATTAAAATCATAGCCATC+AGG | 0.546504 | 4_1:-69700033 | None:intergenic |
| TGGTGTTAGACATTATAAAT+GGG | 0.546733 | 4_1:+69697723 | Msa0568110:CDS |
| CAAACACCAGCAGGTAAGCT+TGG | 0.547162 | 4_1:-69698811 | None:intergenic |
| ACCATTAATGGAAAGACTCC+AGG | 0.548027 | 4_1:+69697796 | Msa0568110:CDS |
| ACAAATGCTACTTCTAGCAA+TGG | 0.556255 | 4_1:+69700084 | Msa0568110:CDS |
| CTCCACCACCTCCACCAGCA+TGG | 0.556607 | 4_1:+69699779 | Msa0568110:CDS |
| TCCACCACCTCCACCAGCAT+GGG | 0.556708 | 4_1:+69699780 | Msa0568110:CDS |
| CATGGGACAATGTTGAGTCC+AGG | 0.557068 | 4_1:+69699797 | Msa0568110:CDS |
| GTCCAACCAAATGAGTGTAC+TGG | 0.559519 | 4_1:-69700309 | None:intergenic |
| ATCAGATAATCCTGGTGTGT+GGG | 0.562243 | 4_1:+69700347 | Msa0568110:CDS |
| CAATGGAAAGCCCACACACC+AGG | 0.564141 | 4_1:-69700357 | None:intergenic |
| CCACAACCCATGATGGATGA+AGG | 0.564653 | 4_1:-69700453 | None:intergenic |
| GATGAGTTACAAACACCAGC+AGG | 0.565048 | 4_1:-69698820 | None:intergenic |
| ACATTGTCCCATGCTGGTGG+AGG | 0.567912 | 4_1:-69699787 | None:intergenic |
| GATCAGATAATCCTGGTGTG+TGG | 0.567953 | 4_1:+69700346 | Msa0568110:CDS |
| TTGGTGGCGACCTCATTGGA+TGG | 0.568529 | 4_1:-69699753 | None:intergenic |
| ATGGGTTGTGGCAAAAGCAA+AGG | 0.574548 | 4_1:+69700465 | Msa0568110:CDS |
| ATGCTCACTATGGAATGCAA+AGG | 0.577390 | 4_1:+69698455 | Msa0568110:CDS |
| TCATGTCCATGAAGATGCCA+TGG | 0.579018 | 4_1:-69700192 | None:intergenic |
| TGTTGTGAGAGAGAGCTCAA+TGG | 0.579640 | 4_1:-69697578 | None:intergenic |
| TCTAATACCATGCCAATGGA+TGG | 0.581741 | 4_1:-69697893 | None:intergenic |
| AAATCATAGCCATCAGGTGG+AGG | 0.584412 | 4_1:-69700027 | None:intergenic |
| TCTCAATGTCCTATACTACC+TGG | 0.584728 | 4_1:+69698093 | Msa0568110:CDS |
| ATGACTGTTGTTGAAGCAGA+TGG | 0.588116 | 4_1:+69699556 | Msa0568110:CDS |
| AAGGTGTCTCCAGGTAGTAT+AGG | 0.588687 | 4_1:-69698102 | None:intergenic |
| TCAACATTGTCCCATGCTGG+TGG | 0.589698 | 4_1:-69699790 | None:intergenic |
| AGAAACAGAACAACCCCACC+TGG | 0.591663 | 4_1:+69699703 | Msa0568110:CDS |
| TGTATGTTCTAAAGTAACAA+AGG | 0.592217 | 4_1:-69700526 | None:intergenic |
| AAGCTACCTTCATCCATCAT+GGG | 0.594823 | 4_1:+69700447 | Msa0568110:CDS |
| AACCTTGCCATCCATTGGCA+TGG | 0.596188 | 4_1:+69697886 | Msa0568110:CDS |
| CCTGTCTAATACCATGCCAA+TGG | 0.599234 | 4_1:-69697897 | None:intergenic |
| AAGAATCTCTACATATACTC+AGG | 0.600439 | 4_1:+69699604 | Msa0568110:CDS |
| AACCAAACACCTCCACCTGA+TGG | 0.600941 | 4_1:+69700018 | Msa0568110:CDS |
| CTTCAACAACAGTCATGTTG+TGG | 0.606047 | 4_1:-69699549 | None:intergenic |
| GAAAATGCCTAAACCAGGTG+GGG | 0.606749 | 4_1:-69699716 | None:intergenic |
| TGAAAATGCCTAAACCAGGT+GGG | 0.607601 | 4_1:-69699717 | None:intergenic |
| CTTGGTTTGATGGAACAGAA+GGG | 0.611684 | 4_1:+69698067 | Msa0568110:CDS |
| AATGAGACTCTATATGACAA+TGG | 0.612162 | 4_1:-69700374 | None:intergenic |
| CAAAACTATGACTCTATCTG+AGG | 0.612834 | 4_1:-69699878 | None:intergenic |
| TTGAAAATGCCTAAACCAGG+TGG | 0.618052 | 4_1:-69699718 | None:intergenic |
| GGTGAATTTCCACAAAGCTG+AGG | 0.618690 | 4_1:+69697699 | Msa0568110:CDS |
| TTGGTTTGATGGAACAGAAG+GGG | 0.622382 | 4_1:+69698068 | Msa0568110:CDS |
| TTTAAGTGCAACAAGATAAG+GGG | 0.625406 | 4_1:-69699974 | None:intergenic |
| AACAACAAATCGATAAACAA+AGG | 0.630677 | 4_1:-69698121 | None:intergenic |
| ATAATAGCGAGACACATCCA+TGG | 0.631630 | 4_1:+69700175 | Msa0568110:CDS |
| TCAACTTCAACTAAGCCTAA+GGG | 0.636069 | 4_1:+69697636 | Msa0568110:CDS |
| GCACAGTATTCTTCATAATG+GGG | 0.640153 | 4_1:-69700287 | None:intergenic |
| TTAAAATCATAGCCATCAGG+TGG | 0.640896 | 4_1:-69700030 | None:intergenic |
| GCATGATAAAGATATGTACC+AGG | 0.647073 | 4_1:-69698436 | None:intergenic |
| CATCCTTAACAATCTAGACA+TGG | 0.647662 | 4_1:+69697612 | Msa0568110:exon |
| GCAACAAGATAAGGGGTGTG+AGG | 0.654315 | 4_1:-69699967 | None:intergenic |
| AAGTTTCTTATAACAATCAG+GGG | 0.660671 | 4_1:-69697767 | None:intergenic |
| CCAACCATTCAAGCACAAGA+GGG | 0.665266 | 4_1:+69697820 | Msa0568110:CDS |
| TAGTTGAAAATGCCTAAACC+AGG | 0.675427 | 4_1:-69699721 | None:intergenic |
| TGTTAGACATTATAAATGGG+AGG | 0.685230 | 4_1:+69697726 | Msa0568110:CDS |
| AGTTTATGGAATGATTCGTG+TGG | 0.691203 | 4_1:+69698486 | Msa0568110:CDS |
| CCTTCTGTTCCATCAAACCA+AGG | 0.696461 | 4_1:-69698066 | None:intergenic |
| ACTACCCAAACCATCCAATG+AGG | 0.700116 | 4_1:+69699743 | Msa0568110:CDS |
| GCTGAAGTTCAATACAACTG+TGG | 0.701274 | 4_1:+69700116 | Msa0568110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAAATCTATTCATT+TGG | + | chr4_1:69697976-69697995 | Msa0568110:intron | 10.0% |
| !! | AAAAATGTTTATATCTAATT+TGG | + | chr4_1:69698393-69698412 | Msa0568110:intron | 10.0% |
| !!! | AAACATAGAAACAATAATTT+TGG | - | chr4_1:69697667-69697686 | None:intergenic | 15.0% |
| !!! | TTATTGTTTCTTTGTATATT+TGG | + | chr4_1:69698733-69698752 | Msa0568110:intron | 15.0% |
| !!! | TTATTTATTTCTTAGTCATA+TGG | + | chr4_1:69699247-69699266 | Msa0568110:intron | 15.0% |
| !!! | TCACCAAATTATAATTTTTT+GGG | - | chr4_1:69700266-69700285 | None:intergenic | 15.0% |
| !!! | TTCACCAAATTATAATTTTT+TGG | - | chr4_1:69700267-69700286 | None:intergenic | 15.0% |
| !!! | AAACTTGTTATAACCATTAA+TGG | + | chr4_1:69697784-69697803 | Msa0568110:CDS | 20.0% |
| !!! | AAAATATTTTGGACTAGTAA+AGG | - | chr4_1:69697927-69697946 | None:intergenic | 20.0% |
| !! | TTAATATATAATGACTGATG+TGG | + | chr4_1:69698020-69698039 | Msa0568110:intron | 20.0% |
| !! | AGACCCAAAAAATTATAATT+TGG | + | chr4_1:69700260-69700279 | Msa0568110:CDS | 20.0% |
| !!! | ATATATCATGATGATTCTTT+TGG | - | chr4_1:69700593-69700612 | None:intergenic | 20.0% |
| !! | TGGTGTTAGACATTATAAAT+GGG | + | chr4_1:69697723-69697742 | Msa0568110:CDS | 25.0% |
| ! | AAGTTTCTTATAACAATCAG+GGG | - | chr4_1:69697770-69697789 | None:intergenic | 25.0% |
| ! | CAAGTTTCTTATAACAATCA+GGG | - | chr4_1:69697771-69697790 | None:intergenic | 25.0% |
| ! | ACAAGTTTCTTATAACAATC+AGG | - | chr4_1:69697772-69697791 | None:intergenic | 25.0% |
| ! | AATCATTAAGCACCAAATAT+AGG | - | chr4_1:69698002-69698021 | None:intergenic | 25.0% |
| ! | AACAACAAATCGATAAACAA+AGG | - | chr4_1:69698124-69698143 | None:intergenic | 25.0% |
| !!! | TTTATCGATTTGTTGTTGAT+AGG | + | chr4_1:69698127-69698146 | Msa0568110:CDS | 25.0% |
| !!! | TTATCGATTTGTTGTTGATA+GGG | + | chr4_1:69698128-69698147 | Msa0568110:CDS | 25.0% |
| ! | AATAGATCATGTTTGATCAA+CGG | - | chr4_1:69698308-69698327 | None:intergenic | 25.0% |
| ! | CTATCAAAGTCATAAGAAAA+AGG | - | chr4_1:69698529-69698548 | None:intergenic | 25.0% |
| !!! | GAAGCATTATTTTGAATGAT+TGG | + | chr4_1:69698548-69698567 | Msa0568110:CDS | 25.0% |
| ! | ATTGTTCATAAGTACTCTTA+TGG | - | chr4_1:69698576-69698595 | None:intergenic | 25.0% |
| ! | AATGAATGATTACCTCTATT+TGG | - | chr4_1:69698942-69698961 | None:intergenic | 25.0% |
| !! | ATCATCCAACTTTTTAAACA+AGG | + | chr4_1:69698980-69698999 | Msa0568110:intron | 25.0% |
| ! | AAGCGAGAAAAATTAAACAA+AGG | - | chr4_1:69699485-69699504 | None:intergenic | 25.0% |
| ! | TTATTAAAATCATAGCCATC+AGG | - | chr4_1:69700036-69700055 | None:intergenic | 25.0% |
| !! | TAATTACGATATTTTCAGTG+TGG | + | chr4_1:69700053-69700072 | Msa0568110:CDS | 25.0% |
| ! | TATAGAGTCTCATTTCTATA+TGG | + | chr4_1:69700383-69700402 | Msa0568110:CDS | 25.0% |
| ! | ATAGAGTCTCATTTCTATAT+GGG | + | chr4_1:69700384-69700403 | Msa0568110:CDS | 25.0% |
| !!! | TTTTTGAAGAAGGAATTGAA+AGG | + | chr4_1:69700418-69700437 | Msa0568110:CDS | 25.0% |
| !!! | TTTTGAAGAAGGAATTGAAA+GGG | + | chr4_1:69700419-69700438 | Msa0568110:CDS | 25.0% |
| !!! | TGTATGTTCTAAAGTAACAA+AGG | - | chr4_1:69700529-69700548 | None:intergenic | 25.0% |
| !!! | TTTTGGAGTAAGAAAAGAAT+TGG | - | chr4_1:69700576-69700595 | None:intergenic | 25.0% |
| ! | TAGTATTATACAAATTGTGC+TGG | + | chr4_1:69700632-69700651 | Msa0568110:three_prime_UTR | 25.0% |
| ! | CAATTACAATTTACACAATG+AGG | - | chr4_1:69700658-69700677 | None:intergenic | 25.0% |
| !! | GACTCTTTTCTGTAAAAAAA+TGG | + | chr4_1:69700691-69700710 | Msa0568110:three_prime_UTR | 25.0% |
| ! | TTCTGTAAAAAAATGGTTAG+AGG | + | chr4_1:69700698-69700717 | Msa0568110:three_prime_UTR | 25.0% |
| TCTATGTTTCTTTCTCATTC+TGG | + | chr4_1:69697678-69697697 | Msa0568110:CDS | 30.0% | |
| ! | CTGGTGTTAGACATTATAAA+TGG | + | chr4_1:69697722-69697741 | Msa0568110:CDS | 30.0% |
| TGTTAGACATTATAAATGGG+AGG | + | chr4_1:69697726-69697745 | Msa0568110:CDS | 30.0% | |
| CTATTCATTTGGCCTATATT+TGG | + | chr4_1:69697987-69698006 | Msa0568110:intron | 30.0% | |
| ! | CCATAATTTTGTCAAACTCA+CGG | - | chr4_1:69698203-69698222 | None:intergenic | 30.0% |
| TAAAGCTTTCGATAAGATCA+TGG | - | chr4_1:69698231-69698250 | None:intergenic | 30.0% | |
| ! | AGTTTTCGACAAAATCTTAG+CGG | + | chr4_1:69698257-69698276 | Msa0568110:intron | 30.0% |
| GTGTTGAAATTGAAGATCAA+CGG | - | chr4_1:69698338-69698357 | None:intergenic | 30.0% | |
| ACATATTTAATGTTACAGCC+TGG | + | chr4_1:69698418-69698437 | Msa0568110:intron | 30.0% | |
| TATCTTTATCATGCTCACTA+TGG | + | chr4_1:69698445-69698464 | Msa0568110:CDS | 30.0% | |
| AGTCATAAGAAAAAGGTTCA+GGG | - | chr4_1:69698522-69698541 | None:intergenic | 30.0% | |
| AAGTCATAAGAAAAAGGTTC+AGG | - | chr4_1:69698523-69698542 | None:intergenic | 30.0% | |
| AACCAGATGTAAGAATTAGA+TGG | + | chr4_1:69698635-69698654 | Msa0568110:intron | 30.0% | |
| ATCCATCTAATTCTTACATC+TGG | - | chr4_1:69698640-69698659 | None:intergenic | 30.0% | |
| TTCTTCAATTGTCTAATTGC+TGG | + | chr4_1:69698708-69698727 | Msa0568110:intron | 30.0% | |
| !!! | CTGATTCTATCGGTTTTATA+GGG | - | chr4_1:69699143-69699162 | None:intergenic | 30.0% |
| TTTGTATAAAGAAGACAGAC+TGG | - | chr4_1:69699198-69699217 | None:intergenic | 30.0% | |
| ATATGGTTGAACCACAATTT+AGG | + | chr4_1:69699264-69699283 | Msa0568110:intron | 30.0% | |
| TATGGTTGAACCACAATTTA+GGG | + | chr4_1:69699265-69699284 | Msa0568110:intron | 30.0% | |
| ! | CATGGTTCAATTGGTTTAAT+CGG | - | chr4_1:69699309-69699328 | None:intergenic | 30.0% |
| ! | ATCAAACCAGTAAGACTTTT+AGG | - | chr4_1:69699333-69699352 | None:intergenic | 30.0% |
| TAGAGATTCTTAACCACAAA+AGG | - | chr4_1:69699595-69699614 | None:intergenic | 30.0% | |
| AAGAATCTCTACATATACTC+AGG | + | chr4_1:69699604-69699623 | Msa0568110:CDS | 30.0% | |
| ! | GAGGTTTGATTGTGTAATTT+TGG | - | chr4_1:69699852-69699871 | None:intergenic | 30.0% |
| TTTAAGTGCAACAAGATAAG+GGG | - | chr4_1:69699977-69699996 | None:intergenic | 30.0% | |
| CTTTAAGTGCAACAAGATAA+GGG | - | chr4_1:69699978-69699997 | None:intergenic | 30.0% | |
| TCTTTAAGTGCAACAAGATA+AGG | - | chr4_1:69699979-69699998 | None:intergenic | 30.0% | |
| GCACTTAAAGAGAATATAAC+TGG | + | chr4_1:69699988-69700007 | Msa0568110:CDS | 30.0% | |
| CTTCTAGCAATGGAATTTAT+AGG | + | chr4_1:69700094-69700113 | Msa0568110:CDS | 30.0% | |
| ! | ATCTTCATGGACATGATTTT+TGG | + | chr4_1:69700199-69700218 | Msa0568110:CDS | 30.0% |
| ! | TCTTCATGGACATGATTTTT+GGG | + | chr4_1:69700200-69700219 | Msa0568110:CDS | 30.0% |
| AATGAGACTCTATATGACAA+TGG | - | chr4_1:69700377-69700396 | None:intergenic | 30.0% | |
| TCTCATTTCTATATGGGAAT+GGG | + | chr4_1:69700390-69700409 | Msa0568110:CDS | 30.0% | |
| ! | TTTTTACAGAAAAGAGTCTG+AGG | - | chr4_1:69700689-69700708 | None:intergenic | 30.0% |
| CATCCTTAACAATCTAGACA+TGG | + | chr4_1:69697612-69697631 | Msa0568110:exon | 35.0% | |
| GAACCATGTCTAGATTGTTA+AGG | - | chr4_1:69697618-69697637 | None:intergenic | 35.0% | |
| TTCAACTTCAACTAAGCCTA+AGG | + | chr4_1:69697635-69697654 | Msa0568110:CDS | 35.0% | |
| TCAACTTCAACTAAGCCTAA+GGG | + | chr4_1:69697636-69697655 | Msa0568110:CDS | 35.0% | |
| ! | GTGGTTTTTGTATGACAGAT+TGG | + | chr4_1:69698039-69698058 | Msa0568110:intron | 35.0% |
| AAGATGAATGAATTCGTGCA+CGG | + | chr4_1:69698168-69698187 | Msa0568110:intron | 35.0% | |
| CCGTGAGTTTGACAAAATTA+TGG | + | chr4_1:69698200-69698219 | Msa0568110:intron | 35.0% | |
| GCATGATAAAGATATGTACC+AGG | - | chr4_1:69698439-69698458 | None:intergenic | 35.0% | |
| AGTTTATGGAATGATTCGTG+TGG | + | chr4_1:69698486-69698505 | Msa0568110:CDS | 35.0% | |
| AGTACTTATGAACAATCTGC+TGG | + | chr4_1:69698580-69698599 | Msa0568110:CDS | 35.0% | |
| TCACTTCTGATTCATGGAAA+AGG | + | chr4_1:69698766-69698785 | Msa0568110:CDS | 35.0% | |
| ! | GCAGACCTTGTTTAAAAAGT+TGG | - | chr4_1:69698988-69699007 | None:intergenic | 35.0% |
| ! | TGGTTTTCAGTTAAACCAGT+CGG | - | chr4_1:69699075-69699094 | None:intergenic | 35.0% |
| !!! | CCTGATTCTATCGGTTTTAT+AGG | - | chr4_1:69699144-69699163 | None:intergenic | 35.0% |
| CCTATAAAACCGATAGAATC+AGG | + | chr4_1:69699141-69699160 | Msa0568110:intron | 35.0% | |
| ! | TGAACCACAATTTAGGGTTA+AGG | + | chr4_1:69699271-69699290 | Msa0568110:intron | 35.0% |
| ! | GAACCACAATTTAGGGTTAA+GGG | + | chr4_1:69699272-69699291 | Msa0568110:intron | 35.0% |
| !! | CTTTTAGGTCATGGTTCAAT+TGG | - | chr4_1:69699318-69699337 | None:intergenic | 35.0% |
| CAATGTTGTCAAAACAAGAC+CGG | - | chr4_1:69699358-69699377 | None:intergenic | 35.0% | |
| TCGCAAAATGACTACCATTA+AGG | + | chr4_1:69699386-69699405 | Msa0568110:intron | 35.0% | |
| TGACATGTTTGTAATGATGC+AGG | + | chr4_1:69699525-69699544 | Msa0568110:intron | 35.0% | |
| GACATGTTTGTAATGATGCA+GGG | + | chr4_1:69699526-69699545 | Msa0568110:intron | 35.0% | |
| ! | ACACTATGTTGATCCTTTTG+TGG | + | chr4_1:69699579-69699598 | Msa0568110:CDS | 35.0% |
| TGATCCAGTAGTTTCTTGAT+GGG | - | chr4_1:69699666-69699685 | None:intergenic | 35.0% | |
| TAGTTGAAAATGCCTAAACC+AGG | - | chr4_1:69699724-69699743 | None:intergenic | 35.0% | |
| CAAAACTATGACTCTATCTG+AGG | - | chr4_1:69699881-69699900 | None:intergenic | 35.0% | |
| CTATAGACAATGTTCGTCAT+TGG | + | chr4_1:69699917-69699936 | Msa0568110:CDS | 35.0% | |
| TTAAAATCATAGCCATCAGG+TGG | - | chr4_1:69700033-69700052 | None:intergenic | 35.0% | |
| ! | ACAAATGCTACTTCTAGCAA+TGG | + | chr4_1:69700084-69700103 | Msa0568110:CDS | 35.0% |
| !!! | GATTTTTGGGTACTTGGATA+TGG | + | chr4_1:69700213-69700232 | Msa0568110:CDS | 35.0% |
| GCACAGTATTCTTCATAATG+GGG | - | chr4_1:69700290-69700309 | None:intergenic | 35.0% | |
| GGCACAGTATTCTTCATAAT+GGG | - | chr4_1:69700291-69700310 | None:intergenic | 35.0% | |
| TGGCACAGTATTCTTCATAA+TGG | - | chr4_1:69700292-69700311 | None:intergenic | 35.0% | |
| GTCTCATTTCTATATGGGAA+TGG | + | chr4_1:69700389-69700408 | Msa0568110:CDS | 35.0% | |
| AAGAAGGAATTGAAAGGGTT+GGG | + | chr4_1:69700424-69700443 | Msa0568110:CDS | 35.0% | |
| !!! | ATAATTTTGGTGCTGCCCTT+AGG | - | chr4_1:69697654-69697673 | None:intergenic | 40.0% |
| GGGAGGTGAAGTATGATTAT+AGG | + | chr4_1:69697743-69697762 | Msa0568110:CDS | 40.0% | |
| ACCATTAATGGAAAGACTCC+AGG | + | chr4_1:69697796-69697815 | Msa0568110:CDS | 40.0% | |
| TCCTGGAGTCTTTCCATTAA+TGG | - | chr4_1:69697800-69697819 | None:intergenic | 40.0% | |
| TCTAATACCATGCCAATGGA+TGG | - | chr4_1:69697896-69697915 | None:intergenic | 40.0% | |
| TATGACAGATTGGAACTCCT+TGG | + | chr4_1:69698049-69698068 | Msa0568110:intron | 40.0% | |
| ! | ATTGGAACTCCTTGGTTTGA+TGG | + | chr4_1:69698057-69698076 | Msa0568110:CDS | 40.0% |
| ! | CTTGGTTTGATGGAACAGAA+GGG | + | chr4_1:69698067-69698086 | Msa0568110:CDS | 40.0% |
| ! | TTGGTTTGATGGAACAGAAG+GGG | + | chr4_1:69698068-69698087 | Msa0568110:CDS | 40.0% |
| TCTCAATGTCCTATACTACC+TGG | + | chr4_1:69698093-69698112 | Msa0568110:CDS | 40.0% | |
| TGTTTGATCAACGGTGAGTT+TGG | - | chr4_1:69698299-69698318 | None:intergenic | 40.0% | |
| ATGCTCACTATGGAATGCAA+AGG | + | chr4_1:69698455-69698474 | Msa0568110:CDS | 40.0% | |
| TGCTCACTATGGAATGCAAA+GGG | + | chr4_1:69698456-69698475 | Msa0568110:CDS | 40.0% | |
| GAAAAAGGTTCAGGGTCATT+AGG | - | chr4_1:69698514-69698533 | None:intergenic | 40.0% | |
| ! | TGTCTGCAATCCCTTTTCAA+TGG | + | chr4_1:69698605-69698624 | Msa0568110:CDS | 40.0% |
| ! | GTCTGCAATCCCTTTTCAAT+GGG | + | chr4_1:69698606-69698625 | Msa0568110:CDS | 40.0% |
| CATGAATCAGAAGTGACTGA+GGG | - | chr4_1:69698762-69698781 | None:intergenic | 40.0% | |
| TTATTACCAAGCTTACCTGC+TGG | + | chr4_1:69698805-69698824 | Msa0568110:CDS | 40.0% | |
| AGCACTCAGTTTCCAAATAG+AGG | + | chr4_1:69698927-69698946 | Msa0568110:CDS | 40.0% | |
| TAATCTCAGTTGCGTTACCA+TGG | + | chr4_1:69699013-69699032 | Msa0568110:intron | 40.0% | |
| CGTGTGTACATCAAAAACCA+TGG | - | chr4_1:69699033-69699052 | None:intergenic | 40.0% | |
| !!! | TCTATCGGTTTTATAGGGCT+GGG | - | chr4_1:69699138-69699157 | None:intergenic | 40.0% |
| !!! | TTCTATCGGTTTTATAGGGC+TGG | - | chr4_1:69699139-69699158 | None:intergenic | 40.0% |
| GCAGTTCAACCTGATTCTAT+CGG | - | chr4_1:69699153-69699172 | None:intergenic | 40.0% | |
| !! | GATAGAATCAGGTTGAACTG+CGG | + | chr4_1:69699152-69699171 | Msa0568110:intron | 40.0% |
| TGACCCTTAACCCTAAATTG+TGG | - | chr4_1:69699278-69699297 | None:intergenic | 40.0% | |
| ! | CAATTTAGGGTTAAGGGTCA+TGG | + | chr4_1:69699278-69699297 | Msa0568110:intron | 40.0% |
| !! | CCAGTAAGACTTTTAGGTCA+TGG | - | chr4_1:69699327-69699346 | None:intergenic | 40.0% |
| CCATGACCTAAAAGTCTTAC+TGG | + | chr4_1:69699324-69699343 | Msa0568110:intron | 40.0% | |
| !! | AGTCTTACTGGTTTGATCAC+CGG | + | chr4_1:69699336-69699355 | Msa0568110:intron | 40.0% |
| !!! | CGGTCTTGTTTTGACAACAT+TGG | + | chr4_1:69699356-69699375 | Msa0568110:intron | 40.0% |
| TGTGACTGATGTGACCTTAA+TGG | - | chr4_1:69699403-69699422 | None:intergenic | 40.0% | |
| ATGCAGTTGTGGTAATAGTC+TGG | - | chr4_1:69699457-69699476 | None:intergenic | 40.0% | |
| CAAAGGCTAAAATGCAGTTG+TGG | - | chr4_1:69699468-69699487 | None:intergenic | 40.0% | |
| CTTCAACAACAGTCATGTTG+TGG | - | chr4_1:69699552-69699571 | None:intergenic | 40.0% | |
| ATGACTGTTGTTGAAGCAGA+TGG | + | chr4_1:69699556-69699575 | Msa0568110:CDS | 40.0% | |
| AAGACCCATCAAGAAACTAC+TGG | + | chr4_1:69699659-69699678 | Msa0568110:CDS | 40.0% | |
| GTGATCCAGTAGTTTCTTGA+TGG | - | chr4_1:69699667-69699686 | None:intergenic | 40.0% | |
| GTTTCTGCTGACAACATTTG+AGG | - | chr4_1:69699689-69699708 | None:intergenic | 40.0% | |
| TGAAAATGCCTAAACCAGGT+GGG | - | chr4_1:69699720-69699739 | None:intergenic | 40.0% | |
| TTGAAAATGCCTAAACCAGG+TGG | - | chr4_1:69699721-69699740 | None:intergenic | 40.0% | |
| ! | TTTGGTGAGCTTTGATTGCA+AGG | - | chr4_1:69699834-69699853 | None:intergenic | 40.0% |
| ! | ATGACTCTATCTGAGGTTGT+TGG | - | chr4_1:69699874-69699893 | None:intergenic | 40.0% |
| GCTGAAGTTCAATACAACTG+TGG | + | chr4_1:69700116-69700135 | Msa0568110:CDS | 40.0% | |
| ATAATAGCGAGACACATCCA+TGG | + | chr4_1:69700175-69700194 | Msa0568110:CDS | 40.0% | |
| !!! | GGACATGATTTTTGGGTACT+TGG | + | chr4_1:69700207-69700226 | Msa0568110:CDS | 40.0% |
| TTGGGTACTTGGATATGGAA+AGG | + | chr4_1:69700218-69700237 | Msa0568110:CDS | 40.0% | |
| TGGGTACTTGGATATGGAAA+GGG | + | chr4_1:69700219-69700238 | Msa0568110:CDS | 40.0% | |
| AGGTTTCGATCAGATAATCC+TGG | + | chr4_1:69700339-69700358 | Msa0568110:CDS | 40.0% | |
| ATCAGATAATCCTGGTGTGT+GGG | + | chr4_1:69700347-69700366 | Msa0568110:CDS | 40.0% | |
| TTTCTATATGGGAATGGGAG+TGG | + | chr4_1:69700395-69700414 | Msa0568110:CDS | 40.0% | |
| !! | ATGGGAGTGGTTTTTGAAGA+AGG | + | chr4_1:69700408-69700427 | Msa0568110:CDS | 40.0% |
| GAAGAAGGAATTGAAAGGGT+TGG | + | chr4_1:69700423-69700442 | Msa0568110:CDS | 40.0% | |
| AAGCTACCTTCATCCATCAT+GGG | + | chr4_1:69700447-69700466 | Msa0568110:CDS | 40.0% | |
| TGTTGTGAGAGAGAGCTCAA+TGG | - | chr4_1:69697581-69697600 | None:intergenic | 45.0% | |
| GGTGAATTTCCACAAAGCTG+AGG | + | chr4_1:69697699-69697718 | Msa0568110:CDS | 45.0% | |
| AATTTCCACAAAGCTGAGGC+TGG | + | chr4_1:69697703-69697722 | Msa0568110:CDS | 45.0% | |
| ACCAACCATTCAAGCACAAG+AGG | + | chr4_1:69697819-69697838 | Msa0568110:CDS | 45.0% | |
| CCAACCATTCAAGCACAAGA+GGG | + | chr4_1:69697820-69697839 | Msa0568110:CDS | 45.0% | |
| ATCACCCTCTTGTGCTTGAA+TGG | - | chr4_1:69697827-69697846 | None:intergenic | 45.0% | |
| CAGAAAACCTTGCCATCCAT+TGG | + | chr4_1:69697881-69697900 | Msa0568110:CDS | 45.0% | |
| CCTGTCTAATACCATGCCAA+TGG | - | chr4_1:69697900-69697919 | None:intergenic | 45.0% | |
| CCATTGGCATGGTATTAGAC+AGG | + | chr4_1:69697897-69697916 | Msa0568110:CDS | 45.0% | |
| TGGCATGGTATTAGACAGGT+TGG | + | chr4_1:69697901-69697920 | Msa0568110:intron | 45.0% | |
| CCTTCTGTTCCATCAAACCA+AGG | - | chr4_1:69698069-69698088 | None:intergenic | 45.0% | |
| ! | CCTTGGTTTGATGGAACAGA+AGG | + | chr4_1:69698066-69698085 | Msa0568110:CDS | 45.0% |
| ! | AAGGTGTCTCCAGGTAGTAT+AGG | - | chr4_1:69698105-69698124 | None:intergenic | 45.0% |
| !! | CGATAAACAAAGGTGTCTCC+AGG | - | chr4_1:69698114-69698133 | None:intergenic | 45.0% |
| TATGGAATGCAAAGGGAAGC+AGG | + | chr4_1:69698463-69698482 | Msa0568110:CDS | 45.0% | |
| CAAAGGGAAGCAGGAGTTTA+TGG | + | chr4_1:69698472-69698491 | Msa0568110:CDS | 45.0% | |
| ! | TGCAATCCCTTTTCAATGGG+TGG | + | chr4_1:69698609-69698628 | Msa0568110:CDS | 45.0% |
| ! | GCAATCCCTTTTCAATGGGT+GGG | + | chr4_1:69698610-69698629 | Msa0568110:CDS | 45.0% |
| ! | CAATCCCTTTTCAATGGGTG+GGG | + | chr4_1:69698611-69698630 | Msa0568110:CDS | 45.0% |
| ! | AATCCCTTTTCAATGGGTGG+GGG | + | chr4_1:69698612-69698631 | Msa0568110:CDS | 45.0% |
| CCATGAATCAGAAGTGACTG+AGG | - | chr4_1:69698763-69698782 | None:intergenic | 45.0% | |
| CCTCAGTCACTTCTGATTCA+TGG | + | chr4_1:69698760-69698779 | Msa0568110:intron | 45.0% | |
| GATGAGTTACAAACACCAGC+AGG | - | chr4_1:69698823-69698842 | None:intergenic | 45.0% | |
| ! | TCCTGAATGCTCTCCCTTTT+CGG | + | chr4_1:69698846-69698865 | Msa0568110:CDS | 45.0% |
| GAGACGACTGTTTCCGAAAA+GGG | - | chr4_1:69698862-69698881 | None:intergenic | 45.0% | |
| TGAGACGACTGTTTCCGAAA+AGG | - | chr4_1:69698863-69698882 | None:intergenic | 45.0% | |
| ! | TTTTCGGAAACAGTCGTCTC+AGG | + | chr4_1:69698862-69698881 | Msa0568110:CDS | 45.0% |
| TGTTGTGAAATCGAACCGAC+TGG | + | chr4_1:69699057-69699076 | Msa0568110:intron | 45.0% | |
| AAACCAGCCAGTGTAACACA+TGG | + | chr4_1:69699089-69699108 | Msa0568110:intron | 45.0% | |
| AACTGCGGTTCAACCACAAT+TGG | + | chr4_1:69699167-69699186 | Msa0568110:intron | 45.0% | |
| ! | CAGACTGGTTGAACCAATTG+TGG | - | chr4_1:69699183-69699202 | None:intergenic | 45.0% |
| GAAAATGCCTAAACCAGGTG+GGG | - | chr4_1:69699719-69699738 | None:intergenic | 45.0% | |
| ACTACCCAAACCATCCAATG+AGG | + | chr4_1:69699743-69699762 | Msa0568110:CDS | 45.0% | |
| ! | ACTCTATCTGAGGTTGTTGG+AGG | - | chr4_1:69699871-69699890 | None:intergenic | 45.0% |
| AAATCATAGCCATCAGGTGG+AGG | - | chr4_1:69700030-69700049 | None:intergenic | 45.0% | |
| ACACATCCATGGCATCTTCA+TGG | + | chr4_1:69700186-69700205 | Msa0568110:CDS | 45.0% | |
| TCATGTCCATGAAGATGCCA+TGG | - | chr4_1:69700195-69700214 | None:intergenic | 45.0% | |
| ACTGTGCCAGTACACTCATT+TGG | + | chr4_1:69700303-69700322 | Msa0568110:CDS | 45.0% | |
| TGCCAGTACACTCATTTGGT+TGG | + | chr4_1:69700307-69700326 | Msa0568110:CDS | 45.0% | |
| GTCCAACCAAATGAGTGTAC+TGG | - | chr4_1:69700312-69700331 | None:intergenic | 45.0% | |
| CATTTGGTTGGACTGCTTTG+AGG | + | chr4_1:69700319-69700338 | Msa0568110:CDS | 45.0% | |
| GATCAGATAATCCTGGTGTG+TGG | + | chr4_1:69700346-69700365 | Msa0568110:CDS | 45.0% | |
| GAAGCTACCTTCATCCATCA+TGG | + | chr4_1:69700446-69700465 | Msa0568110:CDS | 45.0% | |
| ! | ATGGGTTGTGGCAAAAGCAA+AGG | + | chr4_1:69700465-69700484 | Msa0568110:CDS | 45.0% |
| GGCAAAAGCAAAGGCTTCTT+AGG | + | chr4_1:69700474-69700493 | Msa0568110:CDS | 45.0% | |
| !!! | CTATTAAATTTAAAATATTT+TGG | - | chr4_1:69697938-69697957 | None:intergenic | 5.0% |
| !!! | CAAAATATTTTAAATTTAAT+AGG | + | chr4_1:69697936-69697955 | Msa0568110:intron | 5.0% |
| TAACACCAGCCTCAGCTTTG+TGG | - | chr4_1:69697711-69697730 | None:intergenic | 50.0% | |
| ! | TGTGCTTGAATGGTTGGTCC+TGG | - | chr4_1:69697817-69697836 | None:intergenic | 50.0% |
| CCCTCTTGTGCTTGAATGGT+TGG | - | chr4_1:69697823-69697842 | None:intergenic | 50.0% | |
| AACCTTGCCATCCATTGGCA+TGG | + | chr4_1:69697886-69697905 | Msa0568110:CDS | 50.0% | |
| TACCATGCCAATGGATGGCA+AGG | - | chr4_1:69697891-69697910 | None:intergenic | 50.0% | |
| GTTCCCCCACCCATTGAAAA+GGG | - | chr4_1:69698618-69698637 | None:intergenic | 50.0% | |
| CAAACACCAGCAGGTAAGCT+TGG | - | chr4_1:69698814-69698833 | None:intergenic | 50.0% | |
| !! | TCCGAAAAGGGAGAGCATTC+AGG | - | chr4_1:69698850-69698869 | None:intergenic | 50.0% |
| GAACCATGTGTTACACTGGC+TGG | - | chr4_1:69699095-69699114 | None:intergenic | 50.0% | |
| GGCTGAACCATGTGTTACAC+TGG | - | chr4_1:69699099-69699118 | None:intergenic | 50.0% | |
| AGAAACAGAACAACCCCACC+TGG | + | chr4_1:69699703-69699722 | Msa0568110:CDS | 50.0% | |
| AGAACAACCCCACCTGGTTT+AGG | + | chr4_1:69699709-69699728 | Msa0568110:CDS | 50.0% | |
| GCGACCTCATTGGATGGTTT+GGG | - | chr4_1:69699750-69699769 | None:intergenic | 50.0% | |
| TCAACATTGTCCCATGCTGG+TGG | - | chr4_1:69699793-69699812 | None:intergenic | 50.0% | |
| GACTCAACATTGTCCCATGC+TGG | - | chr4_1:69699796-69699815 | None:intergenic | 50.0% | |
| CATGGGACAATGTTGAGTCC+AGG | + | chr4_1:69699797-69699816 | Msa0568110:CDS | 50.0% | |
| !! | TGCAAGGCTTTGAGTATGCC+TGG | - | chr4_1:69699818-69699837 | None:intergenic | 50.0% |
| ! | CAAGATAAGGGGTGTGAGGT+AGG | - | chr4_1:69699966-69699985 | None:intergenic | 50.0% |
| ! | GCAACAAGATAAGGGGTGTG+AGG | - | chr4_1:69699970-69699989 | None:intergenic | 50.0% |
| AACCAAACACCTCCACCTGA+TGG | + | chr4_1:69700018-69700037 | Msa0568110:CDS | 50.0% | |
| !! | CCACAACCCATGATGGATGA+AGG | - | chr4_1:69700456-69700475 | None:intergenic | 50.0% |
| ! | CCTTCATCCATCATGGGTTG+TGG | + | chr4_1:69700453-69700472 | Msa0568110:CDS | 50.0% |
| ! | GCTTTTGCCACAACCCATGA+TGG | - | chr4_1:69700463-69700482 | None:intergenic | 50.0% |
| GGTTCCCCCACCCATTGAAA+AGG | - | chr4_1:69698619-69698638 | None:intergenic | 55.0% | |
| ! | CTGGGAGTGTGAACTGTCTG+CGG | - | chr4_1:69699120-69699139 | None:intergenic | 55.0% |
| GGCGACCTCATTGGATGGTT+TGG | - | chr4_1:69699751-69699770 | None:intergenic | 55.0% | |
| !! | TTGGTGGCGACCTCATTGGA+TGG | - | chr4_1:69699756-69699775 | None:intergenic | 55.0% |
| !! | GATGTTGGTGGCGACCTCAT+TGG | - | chr4_1:69699760-69699779 | None:intergenic | 55.0% |
| ACATTGTCCCATGCTGGTGG+AGG | - | chr4_1:69699790-69699809 | None:intergenic | 55.0% | |
| !! | AGCCATCAGGTGGAGGTGTT+TGG | - | chr4_1:69700023-69700042 | None:intergenic | 55.0% |
| CAATGGAAAGCCCACACACC+AGG | - | chr4_1:69700360-69700379 | None:intergenic | 55.0% | |
| !! | GGAGGTGGTGGAGATGTTGG+TGG | - | chr4_1:69699772-69699791 | None:intergenic | 60.0% |
| !! | GGTGGAGGTGGTGGAGATGT+TGG | - | chr4_1:69699775-69699794 | None:intergenic | 60.0% |
| TCCACCACCTCCACCAGCAT+GGG | + | chr4_1:69699780-69699799 | Msa0568110:CDS | 60.0% | |
| TTGTCCCATGCTGGTGGAGG+TGG | - | chr4_1:69699787-69699806 | None:intergenic | 60.0% | |
| CTCCACCACCTCCACCAGCA+TGG | + | chr4_1:69699779-69699798 | Msa0568110:CDS | 65.0% | |
| TCCCATGCTGGTGGAGGTGG+TGG | - | chr4_1:69699784-69699803 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 69697520 | 69700762 | 69697520 | ID=Msa0568110;Name=Msa0568110 |
| chr4_1 | mRNA | 69697520 | 69700762 | 69697520 | ID=Msa0568110-mRNA-1;Parent=Msa0568110;Name=Msa0568110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=111|1|1|1|1|1|5|256|576 |
| chr4_1 | exon | 69697520 | 69697918 | 69697520 | ID=Msa0568110-mRNA-1:exon:23301;Parent=Msa0568110-mRNA-1 |
| chr4_1 | exon | 69698057 | 69698149 | 69698057 | ID=Msa0568110-mRNA-1:exon:23302;Parent=Msa0568110-mRNA-1 |
| chr4_1 | exon | 69698436 | 69698642 | 69698436 | ID=Msa0568110-mRNA-1:exon:23303;Parent=Msa0568110-mRNA-1 |
| chr4_1 | exon | 69698766 | 69698948 | 69698766 | ID=Msa0568110-mRNA-1:exon:23304;Parent=Msa0568110-mRNA-1 |
| chr4_1 | exon | 69699547 | 69700762 | 69699547 | ID=Msa0568110-mRNA-1:exon:23305;Parent=Msa0568110-mRNA-1 |
| chr4_1 | five_prime_UTR | 69697520 | 69697630 | 69697520 | ID=Msa0568110-mRNA-1:five_prime_utr;Parent=Msa0568110-mRNA-1 |
| chr4_1 | CDS | 69697631 | 69697918 | 69697631 | ID=Msa0568110-mRNA-1:cds;Parent=Msa0568110-mRNA-1 |
| chr4_1 | CDS | 69698057 | 69698149 | 69698057 | ID=Msa0568110-mRNA-1:cds;Parent=Msa0568110-mRNA-1 |
| chr4_1 | CDS | 69698436 | 69698642 | 69698436 | ID=Msa0568110-mRNA-1:cds;Parent=Msa0568110-mRNA-1 |
| chr4_1 | CDS | 69698766 | 69698948 | 69698766 | ID=Msa0568110-mRNA-1:cds;Parent=Msa0568110-mRNA-1 |
| chr4_1 | CDS | 69699547 | 69700506 | 69699547 | ID=Msa0568110-mRNA-1:cds;Parent=Msa0568110-mRNA-1 |
| chr4_1 | three_prime_UTR | 69700507 | 69700762 | 69700507 | ID=Msa0568110-mRNA-1:three_prime_utr;Parent=Msa0568110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
