AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1438160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438160 MtrunA17_Chr1g0188451 94.276 297 5 1 16 312 5 289 0.0 573
Msa1438160 MtrunA17_Chr6g0477101 70.609 279 67 4 36 312 1 266 3.88e-143 404
Msa1438160 MtrunA17_Chr6g0464111 70.886 158 33 2 156 312 1 146 2.29e-76 230
Msa1438160 MtrunA17_Chr6g0464101 88.571 35 4 0 111 145 35 69 4.68e-14 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1438160 AT4G15093.1 61.423 267 87 4 38 300 4 258 1.25e-119 345

Find 85 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGCTCTGGCATTTGATTCC+TGG 0.223358 tig0028517:-11873 Msa1438160:CDS
CGCTTCAATATTCTACATTA+AGG 0.243705 tig0028517:-13060 Msa1438160:CDS
GTGATTTATGTCCTCGTATC+TGG 0.279043 tig0028517:+11608 None:intergenic
TTCTTGTTATCTCTGGTCAT+TGG 0.280377 tig0028517:-12862 Msa1438160:CDS
TGCAGGAATTGTTTCATCTA+TGG 0.287643 tig0028517:+12937 None:intergenic
CTTCCCATTGCATGTGGCTA+TGG 0.326906 tig0028517:-11532 Msa1438160:CDS
CCCTCCTCCTCCCTGGGCTC+TGG 0.327725 tig0028517:-11887 Msa1438160:CDS
TCTTGTTATCTCTGGTCATT+GGG 0.336206 tig0028517:-12861 Msa1438160:CDS
TTCACCCTCTTTGCTAACTT+TGG 0.341100 tig0028517:+12171 None:intergenic
AACTTTGGAGCCCCTGGTGC+TGG 0.357532 tig0028517:+12186 None:intergenic
ATTGTGATTAACAACGTTAA+CGG 0.372671 tig0028517:+12823 None:intergenic
CATGTTATGAGTGGCACTTC+CGG 0.373240 tig0028517:+11933 None:intergenic
GAGAAAGCCCTCCTCCTCCC+TGG 0.379390 tig0028517:-11894 Msa1438160:CDS
GATGAGGGTGTTCTAATAAT+CGG 0.388648 tig0028517:-11958 Msa1438160:CDS
TTTGCTAACTTTGGAGCCCC+TGG 0.388909 tig0028517:+12180 None:intergenic
AAGGAACTGATCGAAGCATC+TGG 0.408387 tig0028517:-12150 Msa1438160:CDS
GCCAGAGCCCAGGGAGGAGG+AGG 0.408526 tig0028517:+11886 None:intergenic
AATGAAACCATCCATGATTT+CGG 0.409867 tig0028517:-12803 Msa1438160:CDS
TCTGCCATTCTTGTTATCTC+TGG 0.410290 tig0028517:-12869 Msa1438160:CDS
TATACCAGTATGTCAACTTT+CGG 0.414509 tig0028517:-12043 Msa1438160:CDS
TCGGTTTCATCAAATAGAAA+TGG 0.415828 tig0028517:-12024 Msa1438160:CDS
AGAACACCCTCATCTTTAAG+AGG 0.426483 tig0028517:+11967 None:intergenic
TTCCCATTGCATGTGGCTAT+GGG 0.428707 tig0028517:-11531 Msa1438160:CDS
GGTACTTACCATTATAACTT+AGG 0.430513 tig0028517:-12003 Msa1438160:CDS
GGATGAGCCACTTTCGCATA+TGG 0.439113 tig0028517:+11570 None:intergenic
CATGGAAATTCTTGACATCA+TGG 0.450298 tig0028517:-12916 Msa1438160:CDS
CAAGGTTATTCATGAGAGTT+GGG 0.452153 tig0028517:-11484 Msa1438160:CDS
ATGATTTCGGTGGCTTTCCT+AGG 0.454213 tig0028517:-12790 Msa1438160:CDS
ACTCATAACATGAGAGCAAT+TGG 0.455156 tig0028517:-11922 Msa1438160:CDS
CCAAGGTTATTCATGAGAGT+TGG 0.456924 tig0028517:-11485 Msa1438160:CDS
ATTCATGAGAGTTGGGATAG+TGG 0.458572 tig0028517:-11477 Msa1438160:CDS
TGATTAACAACGTTAACGGT+TGG 0.472085 tig0028517:+12827 None:intergenic
TAGGAAAGCCACCGAAATCA+TGG 0.473235 tig0028517:+12792 None:intergenic
CTTTCCTAGGAGCATGTACA+AGG 0.474154 tig0028517:-12777 Msa1438160:intron
GAAACCGAAAGTTGACATAC+TGG 0.474557 tig0028517:+12039 None:intergenic
TGCAATGGGAAGAAATGATC+AGG 0.474579 tig0028517:+11543 None:intergenic
AGAAAGCCCTCCTCCTCCCT+GGG 0.482352 tig0028517:-11893 Msa1438160:CDS
CAGCTCAAGTATCCAGCACC+AGG 0.488701 tig0028517:-12198 Msa1438160:CDS
GGAATCAAATGCCAGAGCCC+AGG 0.488956 tig0028517:+11876 None:intergenic
CAAACCTTGTACATGCTCCT+AGG 0.492861 tig0028517:+12773 None:intergenic
CTCCCATAGCCACATGCAAT+GGG 0.493902 tig0028517:+11529 None:intergenic
AATGCCAGAGCCCAGGGAGG+AGG 0.498803 tig0028517:+11883 None:intergenic
AGAATGGCAGATGGTCTCTC+AGG 0.511823 tig0028517:+12881 None:intergenic
GCTCCCATAGCCACATGCAA+TGG 0.521180 tig0028517:+11528 None:intergenic
CATGTGGCTATGGGAGCTGC+TGG 0.535183 tig0028517:-11522 Msa1438160:CDS
CATACTGGTATATCAGCCTC+TGG 0.544796 tig0028517:+12054 None:intergenic
GGCTCCAAAGTTAGCAAAGA+GGG 0.544809 tig0028517:-12175 Msa1438160:CDS
GGTGTTCTAATAATCGGATC+CGG 0.552606 tig0028517:-11952 Msa1438160:CDS
CCAACTCTCATGAATAACCT+TGG 0.556818 tig0028517:+11485 None:intergenic
AAGAATCTCTCGTCGAAGGA+AGG 0.559361 tig0028517:-11846 Msa1438160:intron
TCATTTCTTCCCATTGCATG+TGG 0.560813 tig0028517:-11538 Msa1438160:CDS
ATTCTTGACATCATGGAAAG+AGG 0.565403 tig0028517:-12909 Msa1438160:CDS
GAAGGCGCCATATGCGAAAG+TGG 0.568307 tig0028517:-11577 Msa1438160:CDS
ATGACCAGAGATAACAAGAA+TGG 0.569073 tig0028517:+12865 None:intergenic
GTTTCATCTATGGCTAGTGT+TGG 0.573056 tig0028517:+12947 None:intergenic
ATGCGAAAGTGGCTCATCCA+TGG 0.576625 tig0028517:-11566 Msa1438160:CDS
GGAGGAGGAGGGCTTTCTCG+AGG 0.577926 tig0028517:+11898 None:intergenic
AGCATCTGGGTTGAGTCGAG+TGG 0.579096 tig0028517:-12136 Msa1438160:CDS
AATAGCTCCTCTTAAAGATG+AGG 0.581989 tig0028517:-11974 Msa1438160:CDS
GATGTCAAGAATTTCCATGC+AGG 0.582906 tig0028517:+12920 None:intergenic
AGCTGCTGTGAAACCAAAAG+AGG 0.584042 tig0028517:+11440 None:intergenic
GAATCAAATGCCAGAGCCCA+GGG 0.587952 tig0028517:+11877 None:intergenic
TGGTGAGAATTCAAAGGCCA+AGG 0.591154 tig0028517:-11502 Msa1438160:CDS
GGGAAGAAATGATCAGGCCA+TGG 0.597088 tig0028517:+11549 None:intergenic
CATAAATCACTACGAAGAGA+AGG 0.601560 tig0028517:-11595 Msa1438160:CDS
CCAGAGCCCAGGGAGGAGGA+GGG 0.604544 tig0028517:+11887 None:intergenic
AGGAACTGATCGAAGCATCT+GGG 0.606798 tig0028517:-12149 Msa1438160:CDS
AAAGTTAGCAAAGAGGGTGA+AGG 0.608328 tig0028517:-12169 Msa1438160:CDS
TTAAAAGAATCTCTCGTCGA+AGG 0.612211 tig0028517:-11850 Msa1438160:CDS
GAAACCATCCATGATTTCGG+TGG 0.621697 tig0028517:-12800 Msa1438160:CDS
ATAGCTCCTCTTAAAGATGA+GGG 0.624747 tig0028517:-11973 Msa1438160:CDS
TAGATGAAACAATTCCTGCA+TGG 0.625784 tig0028517:-12934 Msa1438160:CDS
AGCTGCTGGTGAGAATTCAA+AGG 0.626345 tig0028517:-11508 Msa1438160:CDS
TGCTCAATGTTCCAGATACG+AGG 0.635008 tig0028517:-11619 Msa1438160:CDS
GTGGGCTTGATCATGGAACA+TGG 0.640571 tig0028517:-12098 Msa1438160:CDS
GCTCAAGTATCCAGCACCAG+GGG 0.654006 tig0028517:-12196 Msa1438160:CDS
AAAGCCACCGAAATCATGGA+TGG 0.655429 tig0028517:+12796 None:intergenic
AGCTCAAGTATCCAGCACCA+GGG 0.658115 tig0028517:-12197 Msa1438160:CDS
GAGATAACAAGAATGGCAGA+TGG 0.658261 tig0028517:+12872 None:intergenic
AATTGCTCTCATGTTATGAG+TGG 0.665609 tig0028517:+11924 None:intergenic
TCTCATGTTGATGTATCCAG+AGG 0.674561 tig0028517:-12070 Msa1438160:CDS
TCTGGATACATCAACATGAG+AGG 0.675165 tig0028517:+12072 None:intergenic
GGGCTCCAAAGTTAGCAAAG+AGG 0.677936 tig0028517:-12176 Msa1438160:CDS
TGGGCTTGATCATGGAACAT+GGG 0.724784 tig0028517:-12097 Msa1438160:CDS
TCAAATGCCAGAGCCCAGGG+AGG 0.758664 tig0028517:+11880 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATGTAATTCATTTTATA+TGG + tig0028517:11471-11490 None:intergenic 10.0%
!!! AATATGTAATTCATTTTATA+TGG + tig0028517:11471-11490 None:intergenic 10.0%
!! AGATAGATATAAAACAAAAA+TGG + tig0028517:12327-12346 None:intergenic 15.0%
!! AGATAGATATAAAACAAAAA+TGG + tig0028517:12327-12346 None:intergenic 15.0%
!!! TCACTTTTTTTCTTGTATTT+TGG + tig0028517:11536-11555 None:intergenic 20.0%
!!! AAGCAAAAGTATACAAAAAA+TGG - tig0028517:11563-11582 Msa1438160:CDS 20.0%
!! CAAGATTTATTCCATTAAAT+GGG + tig0028517:11966-11985 None:intergenic 20.0%
!!! GCTACAATTTCTTAATTTTT+CGG + tig0028517:12026-12045 None:intergenic 20.0%
!!! TCACTTTTTTTCTTGTATTT+TGG + tig0028517:11536-11555 None:intergenic 20.0%
!!! AAGCAAAAGTATACAAAAAA+TGG - tig0028517:11563-11582 Msa1438160:CDS 20.0%
!! CAAGATTTATTCCATTAAAT+GGG + tig0028517:11966-11985 None:intergenic 20.0%
!!! GCTACAATTTCTTAATTTTT+CGG + tig0028517:12026-12045 None:intergenic 20.0%
!! TATACAAAAAATGGCATTGA+AGG - tig0028517:11572-11591 Msa1438160:CDS 25.0%
! ATTGTGATTAACAACGTTAA+CGG + tig0028517:11748-11767 None:intergenic 25.0%
! ATTACATCTTGAAATTTGAG+CGG - tig0028517:11892-11911 Msa1438160:CDS 25.0%
! TTTATTCCATTAAATGGGAT+CGG + tig0028517:11961-11980 None:intergenic 25.0%
! CCAAGATTTATTCCATTAAA+TGG + tig0028517:11967-11986 None:intergenic 25.0%
! CCATTTAATGGAATAAATCT+TGG - tig0028517:11964-11983 Msa1438160:CDS 25.0%
! AAGAAATTGTAGCAATAGAT+TGG - tig0028517:12033-12052 Msa1438160:CDS 25.0%
! ATATGCATACATTACACATT+AGG - tig0028517:12088-12107 Msa1438160:CDS 25.0%
! GGAATCTGAATTAAACAATT+AGG + tig0028517:12171-12190 None:intergenic 25.0%
!!! TTGCTTTTCCTAAGTTATAA+TGG + tig0028517:12576-12595 None:intergenic 25.0%
!! TATACAAAAAATGGCATTGA+AGG - tig0028517:11572-11591 Msa1438160:CDS 25.0%
! ATTGTGATTAACAACGTTAA+CGG + tig0028517:11748-11767 None:intergenic 25.0%
! ATTACATCTTGAAATTTGAG+CGG - tig0028517:11892-11911 Msa1438160:CDS 25.0%
! TTTATTCCATTAAATGGGAT+CGG + tig0028517:11961-11980 None:intergenic 25.0%
! CCAAGATTTATTCCATTAAA+TGG + tig0028517:11967-11986 None:intergenic 25.0%
! CCATTTAATGGAATAAATCT+TGG - tig0028517:11964-11983 Msa1438160:CDS 25.0%
! AAGAAATTGTAGCAATAGAT+TGG - tig0028517:12033-12052 Msa1438160:CDS 25.0%
! ATATGCATACATTACACATT+AGG - tig0028517:12088-12107 Msa1438160:CDS 25.0%
! GGAATCTGAATTAAACAATT+AGG + tig0028517:12171-12190 None:intergenic 25.0%
!!! TTGCTTTTCCTAAGTTATAA+TGG + tig0028517:12576-12595 None:intergenic 25.0%
! CATTTTATATGGTGACAGAA+TGG + tig0028517:11460-11479 None:intergenic 30.0%
CGCTTCAATATTCTACATTA+AGG - tig0028517:11508-11527 Msa1438160:CDS 30.0%
! GAAACGTTTTACATATCACA+TGG - tig0028517:11594-11613 Msa1438160:CDS 30.0%
AATGAAACCATCCATGATTT+CGG - tig0028517:11765-11784 Msa1438160:intron 30.0%
GATTGGATAAACAAACATTG+AGG - tig0028517:12050-12069 Msa1438160:CDS 30.0%
CTATTGAATCATAACTGATC+CGG - tig0028517:12131-12150 Msa1438160:CDS 30.0%
TATTGAATCATAACTGATCC+GGG - tig0028517:12132-12151 Msa1438160:CDS 30.0%
TTAATTCAGATTCCGAACTT+TGG - tig0028517:12177-12196 Msa1438160:CDS 30.0%
!!! TTTCGGTATCGATTTGTTTT+TGG - tig0028517:12224-12243 Msa1438160:intron 30.0%
TAGCTCTTCAATTGATACTT+AGG + tig0028517:12264-12283 None:intergenic 30.0%
AAAACAAAAATGGACCATTG+TGG + tig0028517:12317-12336 None:intergenic 30.0%
TATACCAGTATGTCAACTTT+CGG - tig0028517:12525-12544 Msa1438160:intron 30.0%
TCGGTTTCATCAAATAGAAA+TGG - tig0028517:12544-12563 Msa1438160:intron 30.0%
GGTACTTACCATTATAACTT+AGG - tig0028517:12565-12584 Msa1438160:intron 30.0%
!! ATAGTTGCTATTTGACAACA+TGG + tig0028517:12791-12810 None:intergenic 30.0%
! CATTTTATATGGTGACAGAA+TGG + tig0028517:11460-11479 None:intergenic 30.0%
CGCTTCAATATTCTACATTA+AGG - tig0028517:11508-11527 Msa1438160:CDS 30.0%
! GAAACGTTTTACATATCACA+TGG - tig0028517:11594-11613 Msa1438160:CDS 30.0%
AATGAAACCATCCATGATTT+CGG - tig0028517:11765-11784 Msa1438160:intron 30.0%
GATTGGATAAACAAACATTG+AGG - tig0028517:12050-12069 Msa1438160:CDS 30.0%
CTATTGAATCATAACTGATC+CGG - tig0028517:12131-12150 Msa1438160:CDS 30.0%
TATTGAATCATAACTGATCC+GGG - tig0028517:12132-12151 Msa1438160:CDS 30.0%
TTAATTCAGATTCCGAACTT+TGG - tig0028517:12177-12196 Msa1438160:CDS 30.0%
!!! TTTCGGTATCGATTTGTTTT+TGG - tig0028517:12224-12243 Msa1438160:intron 30.0%
TAGCTCTTCAATTGATACTT+AGG + tig0028517:12264-12283 None:intergenic 30.0%
AAAACAAAAATGGACCATTG+TGG + tig0028517:12317-12336 None:intergenic 30.0%
TATACCAGTATGTCAACTTT+CGG - tig0028517:12525-12544 Msa1438160:intron 30.0%
TCGGTTTCATCAAATAGAAA+TGG - tig0028517:12544-12563 Msa1438160:intron 30.0%
GGTACTTACCATTATAACTT+AGG - tig0028517:12565-12584 Msa1438160:intron 30.0%
!! ATAGTTGCTATTTGACAACA+TGG + tig0028517:12791-12810 None:intergenic 30.0%
TGCAGGAATTGTTTCATCTA+TGG + tig0028517:11634-11653 None:intergenic 35.0%
TAGATGAAACAATTCCTGCA+TGG - tig0028517:11634-11653 Msa1438160:CDS 35.0%
CATGGAAATTCTTGACATCA+TGG - tig0028517:11652-11671 Msa1438160:intron 35.0%
ATTCTTGACATCATGGAAAG+AGG - tig0028517:11659-11678 Msa1438160:intron 35.0%
ATGACCAGAGATAACAAGAA+TGG + tig0028517:11706-11725 None:intergenic 35.0%
! TTCTTGTTATCTCTGGTCAT+TGG - tig0028517:11706-11725 Msa1438160:intron 35.0%
! TCTTGTTATCTCTGGTCATT+GGG - tig0028517:11707-11726 Msa1438160:intron 35.0%
TGATTAACAACGTTAACGGT+TGG + tig0028517:11744-11763 None:intergenic 35.0%
TTTCGGTTCTCAAACAGATT+TGG + tig0028517:12009-12028 None:intergenic 35.0%
GCATACATTACACATTAGGT+TGG - tig0028517:12092-12111 Msa1438160:CDS 35.0%
GAAACTAGAGTCCAATCATT+CGG + tig0028517:12208-12227 None:intergenic 35.0%
! GAATGATTGGACTCTAGTTT+CGG - tig0028517:12207-12226 Msa1438160:intron 35.0%
GATACTTGAGCTGCAAATAA+AGG + tig0028517:12363-12382 None:intergenic 35.0%
TGGACGAAGATAAAAAACGT+GGG - tig0028517:12452-12471 Msa1438160:intron 35.0%
AATAGCTCCTCTTAAAGATG+AGG - tig0028517:12594-12613 Msa1438160:intron 35.0%
ATAGCTCCTCTTAAAGATGA+GGG - tig0028517:12595-12614 Msa1438160:intron 35.0%
!! GATGAGGGTGTTCTAATAAT+CGG - tig0028517:12610-12629 Msa1438160:intron 35.0%
AATTGCTCTCATGTTATGAG+TGG + tig0028517:12647-12666 None:intergenic 35.0%
ACTCATAACATGAGAGCAAT+TGG - tig0028517:12646-12665 Msa1438160:intron 35.0%
TTAAAAGAATCTCTCGTCGA+AGG - tig0028517:12718-12737 Msa1438160:intron 35.0%
AAATAGCAACTATAGCGTAG+TGG - tig0028517:12798-12817 Msa1438160:CDS 35.0%
TTGTTCTGTGATACGTGATT+TGG - tig0028517:12839-12858 Msa1438160:CDS 35.0%
CATAAATCACTACGAAGAGA+AGG - tig0028517:12973-12992 Msa1438160:CDS 35.0%
CAAGGTTATTCATGAGAGTT+GGG - tig0028517:13084-13103 Msa1438160:CDS 35.0%
!! GCTTTTTCTTATGCCTCTTT+TGG - tig0028517:13115-13134 Msa1438160:five_prime_UTR 35.0%
TGCAGGAATTGTTTCATCTA+TGG + tig0028517:11634-11653 None:intergenic 35.0%
TAGATGAAACAATTCCTGCA+TGG - tig0028517:11634-11653 Msa1438160:CDS 35.0%
CATGGAAATTCTTGACATCA+TGG - tig0028517:11652-11671 Msa1438160:intron 35.0%
ATTCTTGACATCATGGAAAG+AGG - tig0028517:11659-11678 Msa1438160:intron 35.0%
ATGACCAGAGATAACAAGAA+TGG + tig0028517:11706-11725 None:intergenic 35.0%
! TTCTTGTTATCTCTGGTCAT+TGG - tig0028517:11706-11725 Msa1438160:intron 35.0%
! TCTTGTTATCTCTGGTCATT+GGG - tig0028517:11707-11726 Msa1438160:intron 35.0%
TGATTAACAACGTTAACGGT+TGG + tig0028517:11744-11763 None:intergenic 35.0%
TTTCGGTTCTCAAACAGATT+TGG + tig0028517:12009-12028 None:intergenic 35.0%
GCATACATTACACATTAGGT+TGG - tig0028517:12092-12111 Msa1438160:CDS 35.0%
GAAACTAGAGTCCAATCATT+CGG + tig0028517:12208-12227 None:intergenic 35.0%
! GAATGATTGGACTCTAGTTT+CGG - tig0028517:12207-12226 Msa1438160:intron 35.0%
GATACTTGAGCTGCAAATAA+AGG + tig0028517:12363-12382 None:intergenic 35.0%
TGGACGAAGATAAAAAACGT+GGG - tig0028517:12452-12471 Msa1438160:intron 35.0%
AATAGCTCCTCTTAAAGATG+AGG - tig0028517:12594-12613 Msa1438160:intron 35.0%
ATAGCTCCTCTTAAAGATGA+GGG - tig0028517:12595-12614 Msa1438160:intron 35.0%
!! GATGAGGGTGTTCTAATAAT+CGG - tig0028517:12610-12629 Msa1438160:intron 35.0%
AATTGCTCTCATGTTATGAG+TGG + tig0028517:12647-12666 None:intergenic 35.0%
ACTCATAACATGAGAGCAAT+TGG - tig0028517:12646-12665 Msa1438160:intron 35.0%
TTAAAAGAATCTCTCGTCGA+AGG - tig0028517:12718-12737 Msa1438160:intron 35.0%
AAATAGCAACTATAGCGTAG+TGG - tig0028517:12798-12817 Msa1438160:CDS 35.0%
TTGTTCTGTGATACGTGATT+TGG - tig0028517:12839-12858 Msa1438160:CDS 35.0%
CATAAATCACTACGAAGAGA+AGG - tig0028517:12973-12992 Msa1438160:CDS 35.0%
CAAGGTTATTCATGAGAGTT+GGG - tig0028517:13084-13103 Msa1438160:CDS 35.0%
!! GCTTTTTCTTATGCCTCTTT+TGG - tig0028517:13115-13134 Msa1438160:five_prime_UTR 35.0%
GTTTCATCTATGGCTAGTGT+TGG + tig0028517:11624-11643 None:intergenic 40.0%
GATGTCAAGAATTTCCATGC+AGG + tig0028517:11651-11670 None:intergenic 40.0%
GAGATAACAAGAATGGCAGA+TGG + tig0028517:11699-11718 None:intergenic 40.0%
! TCTGCCATTCTTGTTATCTC+TGG - tig0028517:11699-11718 Msa1438160:intron 40.0%
AATAAATCTTGGTTGTGCGC+TGG - tig0028517:11975-11994 Msa1438160:CDS 40.0%
! GTTTTCCAATCTCTCCACAA+TGG - tig0028517:12300-12319 Msa1438160:intron 40.0%
TGAGCTGCAAATAAAGGAAC+AGG + tig0028517:12357-12376 None:intergenic 40.0%
TTCACCCTCTTTGCTAACTT+TGG + tig0028517:12400-12419 None:intergenic 40.0%
AAAGTTAGCAAAGAGGGTGA+AGG - tig0028517:12399-12418 Msa1438160:intron 40.0%
GTGGACGAAGATAAAAAACG+TGG - tig0028517:12451-12470 Msa1438160:intron 40.0%
AAAAAACGTGGGCTTGATCA+TGG - tig0028517:12463-12482 Msa1438160:intron 40.0%
TCTGGATACATCAACATGAG+AGG + tig0028517:12499-12518 None:intergenic 40.0%
TCTCATGTTGATGTATCCAG+AGG - tig0028517:12498-12517 Msa1438160:intron 40.0%
GAAACCGAAAGTTGACATAC+TGG + tig0028517:12532-12551 None:intergenic 40.0%
AGAACACCCTCATCTTTAAG+AGG + tig0028517:12604-12623 None:intergenic 40.0%
GGTGTTCTAATAATCGGATC+CGG - tig0028517:12616-12635 Msa1438160:intron 40.0%
! GACGAGAGATTCTTTTAACC+AGG + tig0028517:12716-12735 None:intergenic 40.0%
GTGATTTATGTCCTCGTATC+TGG + tig0028517:12963-12982 None:intergenic 40.0%
TGCAATGGGAAGAAATGATC+AGG + tig0028517:13028-13047 None:intergenic 40.0%
TCATTTCTTCCCATTGCATG+TGG - tig0028517:13030-13049 Msa1438160:CDS 40.0%
CCAACTCTCATGAATAACCT+TGG + tig0028517:13086-13105 None:intergenic 40.0%
CCAAGGTTATTCATGAGAGT+TGG - tig0028517:13083-13102 Msa1438160:CDS 40.0%
ATTCATGAGAGTTGGGATAG+TGG - tig0028517:13091-13110 Msa1438160:CDS 40.0%
GTTTCATCTATGGCTAGTGT+TGG + tig0028517:11624-11643 None:intergenic 40.0%
GATGTCAAGAATTTCCATGC+AGG + tig0028517:11651-11670 None:intergenic 40.0%
GAGATAACAAGAATGGCAGA+TGG + tig0028517:11699-11718 None:intergenic 40.0%
! TCTGCCATTCTTGTTATCTC+TGG - tig0028517:11699-11718 Msa1438160:intron 40.0%
AATAAATCTTGGTTGTGCGC+TGG - tig0028517:11975-11994 Msa1438160:CDS 40.0%
! GTTTTCCAATCTCTCCACAA+TGG - tig0028517:12300-12319 Msa1438160:intron 40.0%
TGAGCTGCAAATAAAGGAAC+AGG + tig0028517:12357-12376 None:intergenic 40.0%
TTCACCCTCTTTGCTAACTT+TGG + tig0028517:12400-12419 None:intergenic 40.0%
AAAGTTAGCAAAGAGGGTGA+AGG - tig0028517:12399-12418 Msa1438160:intron 40.0%
GTGGACGAAGATAAAAAACG+TGG - tig0028517:12451-12470 Msa1438160:intron 40.0%
AAAAAACGTGGGCTTGATCA+TGG - tig0028517:12463-12482 Msa1438160:intron 40.0%
TCTGGATACATCAACATGAG+AGG + tig0028517:12499-12518 None:intergenic 40.0%
TCTCATGTTGATGTATCCAG+AGG - tig0028517:12498-12517 Msa1438160:intron 40.0%
GAAACCGAAAGTTGACATAC+TGG + tig0028517:12532-12551 None:intergenic 40.0%
AGAACACCCTCATCTTTAAG+AGG + tig0028517:12604-12623 None:intergenic 40.0%
GGTGTTCTAATAATCGGATC+CGG - tig0028517:12616-12635 Msa1438160:intron 40.0%
! GACGAGAGATTCTTTTAACC+AGG + tig0028517:12716-12735 None:intergenic 40.0%
GTGATTTATGTCCTCGTATC+TGG + tig0028517:12963-12982 None:intergenic 40.0%
TGCAATGGGAAGAAATGATC+AGG + tig0028517:13028-13047 None:intergenic 40.0%
TCATTTCTTCCCATTGCATG+TGG - tig0028517:13030-13049 Msa1438160:CDS 40.0%
CCAACTCTCATGAATAACCT+TGG + tig0028517:13086-13105 None:intergenic 40.0%
CCAAGGTTATTCATGAGAGT+TGG - tig0028517:13083-13102 Msa1438160:CDS 40.0%
ATTCATGAGAGTTGGGATAG+TGG - tig0028517:13091-13110 Msa1438160:CDS 40.0%
GAAACCATCCATGATTTCGG+TGG - tig0028517:11768-11787 Msa1438160:intron 45.0%
AAAGCCACCGAAATCATGGA+TGG + tig0028517:11775-11794 None:intergenic 45.0%
TAGGAAAGCCACCGAAATCA+TGG + tig0028517:11779-11798 None:intergenic 45.0%
ATGATTTCGGTGGCTTTCCT+AGG - tig0028517:11778-11797 Msa1438160:intron 45.0%
! CTTTCCTAGGAGCATGTACA+AGG - tig0028517:11791-11810 Msa1438160:intron 45.0%
CAAACCTTGTACATGCTCCT+AGG + tig0028517:11798-11817 None:intergenic 45.0%
GTGTAGCCGATCCCATTTAA+TGG - tig0028517:11952-11971 Msa1438160:CDS 45.0%
TTAGGCCATCTTTGCTTACC+CGG + tig0028517:12153-12172 None:intergenic 45.0%
! CATTCGGTGGAACCAAAGTT+CGG + tig0028517:12192-12211 None:intergenic 45.0%
! CTTTGGTTCCACCGAATGAT+TGG - tig0028517:12194-12213 Msa1438160:CDS 45.0%
ACTAGAGTCCAATCATTCGG+TGG + tig0028517:12205-12224 None:intergenic 45.0%
ATGGACCATTGTGGAGAGAT+TGG + tig0028517:12308-12327 None:intergenic 45.0%
GGCTCCAAAGTTAGCAAAGA+GGG - tig0028517:12393-12412 Msa1438160:intron 45.0%
! AAGGAACTGATCGAAGCATC+TGG - tig0028517:12418-12437 Msa1438160:intron 45.0%
! AGGAACTGATCGAAGCATCT+GGG - tig0028517:12419-12438 Msa1438160:intron 45.0%
TGGGCTTGATCATGGAACAT+GGG - tig0028517:12471-12490 Msa1438160:intron 45.0%
CATACTGGTATATCAGCCTC+TGG + tig0028517:12517-12536 None:intergenic 45.0%
CATGTTATGAGTGGCACTTC+CGG + tig0028517:12638-12657 None:intergenic 45.0%
AAGAATCTCTCGTCGAAGGA+AGG - tig0028517:12722-12741 Msa1438160:intron 45.0%
TGTTGTCAAACTGCAGCTAG+TGG - tig0028517:12869-12888 Msa1438160:CDS 45.0%
TGCTCAATGTTCCAGATACG+AGG - tig0028517:12949-12968 Msa1438160:CDS 45.0%
TTCCCATTGCATGTGGCTAT+GGG - tig0028517:13037-13056 Msa1438160:CDS 45.0%
AGCTGCTGGTGAGAATTCAA+AGG - tig0028517:13060-13079 Msa1438160:CDS 45.0%
TGGTGAGAATTCAAAGGCCA+AGG - tig0028517:13066-13085 Msa1438160:CDS 45.0%
AGCTGCTGTGAAACCAAAAG+AGG + tig0028517:13131-13150 None:intergenic 45.0%
GAAACCATCCATGATTTCGG+TGG - tig0028517:11768-11787 Msa1438160:intron 45.0%
AAAGCCACCGAAATCATGGA+TGG + tig0028517:11775-11794 None:intergenic 45.0%
TAGGAAAGCCACCGAAATCA+TGG + tig0028517:11779-11798 None:intergenic 45.0%
ATGATTTCGGTGGCTTTCCT+AGG - tig0028517:11778-11797 Msa1438160:intron 45.0%
! CTTTCCTAGGAGCATGTACA+AGG - tig0028517:11791-11810 Msa1438160:intron 45.0%
CAAACCTTGTACATGCTCCT+AGG + tig0028517:11798-11817 None:intergenic 45.0%
GTGTAGCCGATCCCATTTAA+TGG - tig0028517:11952-11971 Msa1438160:CDS 45.0%
TTAGGCCATCTTTGCTTACC+CGG + tig0028517:12153-12172 None:intergenic 45.0%
! CATTCGGTGGAACCAAAGTT+CGG + tig0028517:12192-12211 None:intergenic 45.0%
! CTTTGGTTCCACCGAATGAT+TGG - tig0028517:12194-12213 Msa1438160:CDS 45.0%
ACTAGAGTCCAATCATTCGG+TGG + tig0028517:12205-12224 None:intergenic 45.0%
ATGGACCATTGTGGAGAGAT+TGG + tig0028517:12308-12327 None:intergenic 45.0%
GGCTCCAAAGTTAGCAAAGA+GGG - tig0028517:12393-12412 Msa1438160:intron 45.0%
! AAGGAACTGATCGAAGCATC+TGG - tig0028517:12418-12437 Msa1438160:intron 45.0%
! AGGAACTGATCGAAGCATCT+GGG - tig0028517:12419-12438 Msa1438160:intron 45.0%
TGGGCTTGATCATGGAACAT+GGG - tig0028517:12471-12490 Msa1438160:intron 45.0%
CATACTGGTATATCAGCCTC+TGG + tig0028517:12517-12536 None:intergenic 45.0%
CATGTTATGAGTGGCACTTC+CGG + tig0028517:12638-12657 None:intergenic 45.0%
AAGAATCTCTCGTCGAAGGA+AGG - tig0028517:12722-12741 Msa1438160:intron 45.0%
TGTTGTCAAACTGCAGCTAG+TGG - tig0028517:12869-12888 Msa1438160:CDS 45.0%
TGCTCAATGTTCCAGATACG+AGG - tig0028517:12949-12968 Msa1438160:CDS 45.0%
TTCCCATTGCATGTGGCTAT+GGG - tig0028517:13037-13056 Msa1438160:CDS 45.0%
AGCTGCTGGTGAGAATTCAA+AGG - tig0028517:13060-13079 Msa1438160:CDS 45.0%
TGGTGAGAATTCAAAGGCCA+AGG - tig0028517:13066-13085 Msa1438160:CDS 45.0%
AGCTGCTGTGAAACCAAAAG+AGG + tig0028517:13131-13150 None:intergenic 45.0%
AGAATGGCAGATGGTCTCTC+AGG + tig0028517:11690-11709 None:intergenic 50.0%
CTGATCCGGGTAAGCAAAGA+TGG - tig0028517:12145-12164 Msa1438160:CDS 50.0%
AGCTCAAGTATCCAGCACCA+GGG - tig0028517:12371-12390 Msa1438160:intron 50.0%
!! TTTGCTAACTTTGGAGCCCC+TGG + tig0028517:12391-12410 None:intergenic 50.0%
GGGCTCCAAAGTTAGCAAAG+AGG - tig0028517:12392-12411 Msa1438160:intron 50.0%
GTGGGCTTGATCATGGAACA+TGG - tig0028517:12470-12489 Msa1438160:intron 50.0%
GAATCAAATGCCAGAGCCCA+GGG + tig0028517:12694-12713 None:intergenic 50.0%
! GGATGAGCCACTTTCGCATA+TGG + tig0028517:13001-13020 None:intergenic 50.0%
ATGCGAAAGTGGCTCATCCA+TGG - tig0028517:13002-13021 Msa1438160:CDS 50.0%
GGGAAGAAATGATCAGGCCA+TGG + tig0028517:13022-13041 None:intergenic 50.0%
CTTCCCATTGCATGTGGCTA+TGG - tig0028517:13036-13055 Msa1438160:CDS 50.0%
CTCCCATAGCCACATGCAAT+GGG + tig0028517:13042-13061 None:intergenic 50.0%
AGAATGGCAGATGGTCTCTC+AGG + tig0028517:11690-11709 None:intergenic 50.0%
CTGATCCGGGTAAGCAAAGA+TGG - tig0028517:12145-12164 Msa1438160:CDS 50.0%
AGCTCAAGTATCCAGCACCA+GGG - tig0028517:12371-12390 Msa1438160:intron 50.0%
!! TTTGCTAACTTTGGAGCCCC+TGG + tig0028517:12391-12410 None:intergenic 50.0%
GGGCTCCAAAGTTAGCAAAG+AGG - tig0028517:12392-12411 Msa1438160:intron 50.0%
GTGGGCTTGATCATGGAACA+TGG - tig0028517:12470-12489 Msa1438160:intron 50.0%
GAATCAAATGCCAGAGCCCA+GGG + tig0028517:12694-12713 None:intergenic 50.0%
! GGATGAGCCACTTTCGCATA+TGG + tig0028517:13001-13020 None:intergenic 50.0%
ATGCGAAAGTGGCTCATCCA+TGG - tig0028517:13002-13021 Msa1438160:CDS 50.0%
GGGAAGAAATGATCAGGCCA+TGG + tig0028517:13022-13041 None:intergenic 50.0%
CTTCCCATTGCATGTGGCTA+TGG - tig0028517:13036-13055 Msa1438160:CDS 50.0%
CTCCCATAGCCACATGCAAT+GGG + tig0028517:13042-13061 None:intergenic 50.0%
CAGCTCAAGTATCCAGCACC+AGG - tig0028517:12370-12389 Msa1438160:intron 55.0%
GCTCAAGTATCCAGCACCAG+GGG - tig0028517:12372-12391 Msa1438160:intron 55.0%
! AGCATCTGGGTTGAGTCGAG+TGG - tig0028517:12432-12451 Msa1438160:intron 55.0%
GGAATCAAATGCCAGAGCCC+AGG + tig0028517:12695-12714 None:intergenic 55.0%
! GGGCTCTGGCATTTGATTCC+TGG - tig0028517:12695-12714 Msa1438160:intron 55.0%
!! GAAGGCGCCATATGCGAAAG+TGG - tig0028517:12991-13010 Msa1438160:CDS 55.0%
GCTCCCATAGCCACATGCAA+TGG + tig0028517:13043-13062 None:intergenic 55.0%
CAGCTCAAGTATCCAGCACC+AGG - tig0028517:12370-12389 Msa1438160:intron 55.0%
GCTCAAGTATCCAGCACCAG+GGG - tig0028517:12372-12391 Msa1438160:intron 55.0%
! AGCATCTGGGTTGAGTCGAG+TGG - tig0028517:12432-12451 Msa1438160:intron 55.0%
GGAATCAAATGCCAGAGCCC+AGG + tig0028517:12695-12714 None:intergenic 55.0%
! GGGCTCTGGCATTTGATTCC+TGG - tig0028517:12695-12714 Msa1438160:intron 55.0%
!! GAAGGCGCCATATGCGAAAG+TGG - tig0028517:12991-13010 Msa1438160:CDS 55.0%
GCTCCCATAGCCACATGCAA+TGG + tig0028517:13043-13062 None:intergenic 55.0%
!! AACTTTGGAGCCCCTGGTGC+TGG + tig0028517:12385-12404 None:intergenic 60.0%
AGAAAGCCCTCCTCCTCCCT+GGG - tig0028517:12675-12694 Msa1438160:intron 60.0%
TCAAATGCCAGAGCCCAGGG+AGG + tig0028517:12691-12710 None:intergenic 60.0%
CATGTGGCTATGGGAGCTGC+TGG - tig0028517:13046-13065 Msa1438160:CDS 60.0%
!! AACTTTGGAGCCCCTGGTGC+TGG + tig0028517:12385-12404 None:intergenic 60.0%
AGAAAGCCCTCCTCCTCCCT+GGG - tig0028517:12675-12694 Msa1438160:intron 60.0%
TCAAATGCCAGAGCCCAGGG+AGG + tig0028517:12691-12710 None:intergenic 60.0%
CATGTGGCTATGGGAGCTGC+TGG - tig0028517:13046-13065 Msa1438160:CDS 60.0%
GGAGGAGGAGGGCTTTCTCG+AGG + tig0028517:12673-12692 None:intergenic 65.0%
GAGAAAGCCCTCCTCCTCCC+TGG - tig0028517:12674-12693 Msa1438160:intron 65.0%
AATGCCAGAGCCCAGGGAGG+AGG + tig0028517:12688-12707 None:intergenic 65.0%
GGAGGAGGAGGGCTTTCTCG+AGG + tig0028517:12673-12692 None:intergenic 65.0%
GAGAAAGCCCTCCTCCTCCC+TGG - tig0028517:12674-12693 Msa1438160:intron 65.0%
AATGCCAGAGCCCAGGGAGG+AGG + tig0028517:12688-12707 None:intergenic 65.0%
CCAGAGCCCAGGGAGGAGGA+GGG + tig0028517:12684-12703 None:intergenic 70.0%
CCAGAGCCCAGGGAGGAGGA+GGG + tig0028517:12684-12703 None:intergenic 70.0%
CCCTCCTCCTCCCTGGGCTC+TGG - tig0028517:12681-12700 Msa1438160:intron 75.0%
GCCAGAGCCCAGGGAGGAGG+AGG + tig0028517:12685-12704 None:intergenic 75.0%
CCCTCCTCCTCCCTGGGCTC+TGG - tig0028517:12681-12700 Msa1438160:intron 75.0%
GCCAGAGCCCAGGGAGGAGG+AGG + tig0028517:12685-12704 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0028517 gene 11431 13159 11431 ID=Msa1438160;Name=Msa1438160
tig0028517 mRNA 11431 13159 11431 ID=Msa1438160-mRNA-1;Parent=Msa1438160;Name=Msa1438160-mRNA-1;_AED=0.16;_eAED=0.16;_QI=46|0.5|0.66|1|1|1|3|0|312
tig0028517 exon 11431 11662 11431 ID=Msa1438160-mRNA-1:exon:11125;Parent=Msa1438160-mRNA-1
tig0028517 exon 11847 12217 11847 ID=Msa1438160-mRNA-1:exon:11124;Parent=Msa1438160-mRNA-1
tig0028517 exon 12778 13159 12778 ID=Msa1438160-mRNA-1:exon:11123;Parent=Msa1438160-mRNA-1
tig0028517 five_prime_UTR 13114 13159 13114 ID=Msa1438160-mRNA-1:five_prime_utr;Parent=Msa1438160-mRNA-1
tig0028517 CDS 12778 13113 12778 ID=Msa1438160-mRNA-1:cds;Parent=Msa1438160-mRNA-1
tig0028517 CDS 11847 12217 11847 ID=Msa1438160-mRNA-1:cds;Parent=Msa1438160-mRNA-1
tig0028517 CDS 11431 11662 11431 ID=Msa1438160-mRNA-1:cds;Parent=Msa1438160-mRNA-1
Gene Sequence

>Msa1438160

ATGAATTACATATTAAGATTATATCATAACACGCTTCAATATTCTACATTAAGGAACCAAAATACAAGAAAAAAAGTGAATTCAATAAGCAAAAGTATACAAAAAATGGCATTGAAGGAAACGTTTTACATATCACATGGATCACCAACACTAGCCATAGATGAAACAATTCCTGCATGGAAATTCTTGACATCATGGAAAGAGGTGTTTCCTGAGAGACCATCTGCCATTCTTGTTATCTCTGGTCATTGGGACACTTCTGTTCCAACCGTTAACGTTGTTAATCACAATGAAACCATCCATGATTTCGGTGGCTTTCCTAGGAGCATGTACAAGCTCAAGTATCCAGCACCAGGGGCTCCAAAGTTAGCAAAGAGGGTGAAGGAACTGATCGAAGCATCTGGGTTGAGTCGAGTGGACGAAGATAAAAAACGTGGGCTTGATCATGGAACATGGGTGCCTCTCATGTTGATGTATCCAGAGGCTGATATACCAGTATGTCAACTTTCGGTTTCATCAAATAGAAATGGTACTTACCATTATAACTTAGGAAAAGCAATAGCTCCTCTTAAAGATGAGGGTGTTCTAATAATCGGATCCGGAAGTGCCACTCATAACATGAGAGCAATTGGTCCTCGAGAAAGCCCTCCTCCTCCCTGGGCTCTGGCATTTGATTCCTGGTTAAAAGAATCTCTCGTCGAAGGAAGTTGTACATTTTCTAATGCAAGTGCTCAATGTTCCAGATACGAGGACATAAATCACTACGAAGAGAAGGCGCCATATGCGAAAGTGGCTCATCCATGGCCTGATCATTTCTTCCCATTGCATGTGGCTATGGGAGCTGCTGGTGAGAATTCAAAGGCCAAGGTTATTCATGAGAGTTGGGATAGTGGTGCTTTTTCTTATGCCTCTTTTGGTTTCACAGCAGCTTCTAGTTGA

Protein sequence

>Msa1438160

MNYILRLYHNTLQYSTLRNQNTRKKVNSISKSIQKMALKETFYISHGSPTLAIDETIPAWKFLTSWKEVFPERPSAILVISGHWDTSVPTVNVVNHNETIHDFGGFPRSMYKLKYPAPGAPKLAKRVKELIEASGLSRVDEDKKRGLDHGTWVPLMLMYPEADIPVCQLSVSSNRNGTYHYNLGKAIAPLKDEGVLIIGSGSATHNMRAIGPRESPPPPWALAFDSWLKESLVEGSCTFSNASAQCSRYEDINHYEEKAPYAKVAHPWPDHFFPLHVAMGAAGENSKAKVIHESWDSGAFSYASFGFTAASS*