AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1413680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413680 MtrunA17_Chr1g0188171 100.000 150 0 0 1 150 1 150 5.94e-106 298
Msa1413680 MtrunA17_Chr1g0166281 86.577 149 20 0 1 149 1 149 1.25e-91 262
Msa1413680 MtrunA17_Chr5g0440931 78.378 148 32 0 1 148 1 148 1.02e-83 242
Msa1413680 MtrunA17_Chr5g0440931 45.070 71 36 1 6 76 82 149 2.09e-11 58.2
Msa1413680 MtrunA17_Chr3g0093271 78.231 147 32 0 1 147 52 198 2.51e-83 243
Msa1413680 MtrunA17_Chr3g0093271 45.070 71 36 1 6 76 133 200 4.80e-11 58.2
Msa1413680 MtrunA17_Chr6g0460211 77.703 148 33 0 1 148 1 148 4.44e-83 241
Msa1413680 MtrunA17_Chr6g0460211 45.070 71 36 1 6 76 82 149 2.22e-11 58.2
Msa1413680 MtrunA17_Chr7g0254731 77.703 148 33 0 1 148 1 148 2.33e-82 239
Msa1413680 MtrunA17_Chr7g0254731 46.479 71 35 1 6 76 82 149 3.65e-12 60.5
Msa1413680 MtrunA17_Chr7g0274101 68.456 149 47 0 1 149 1 149 2.39e-62 188
Msa1413680 MtrunA17_Chr1g0185001 58.503 147 60 1 1 147 1 146 1.64e-58 178
Msa1413680 MtrunA17_Chr8g0366401 44.898 147 78 1 5 148 10 156 1.11e-40 134
Msa1413680 MtrunA17_Chr7g0245231 43.836 146 82 0 3 148 21 166 3.94e-39 130
Msa1413680 MtrunA17_Chr1g0161211 49.265 136 69 0 12 147 46 181 4.30e-38 128
Msa1413680 MtrunA17_Chr1g0161211 41.935 62 36 0 84 145 45 106 1.59e-11 59.7
Msa1413680 MtrunA17_Chr5g0398751 40.541 148 86 1 1 148 1 146 5.41e-38 126
Msa1413680 MtrunA17_Chr6g0450921 42.361 144 83 0 3 146 20 163 9.18e-37 124
Msa1413680 MtrunA17_Chr6g0450921 43.836 73 41 0 74 146 18 90 5.58e-13 62.8
Msa1413680 MtrunA17_Chr4g0062221 43.056 144 74 2 8 146 7 147 7.84e-36 121
Msa1413680 MtrunA17_Chr4g0062221 37.778 90 53 1 4 93 81 167 2.07e-12 61.2
Msa1413680 MtrunA17_Chr3g0100541 45.000 140 62 1 5 144 45 169 2.10e-32 113
Msa1413680 MtrunA17_Chr8g0391691 45.802 131 71 0 12 142 36 166 2.41e-32 113
Msa1413680 MtrunA17_Chr8g0391691 51.562 64 31 0 6 69 103 166 4.12e-14 66.2
Msa1413680 MtrunA17_Chr8g0392951 47.015 134 70 1 13 146 25 157 2.46e-32 112
Msa1413680 MtrunA17_Chr8g0368681 39.189 148 88 1 1 146 1 148 8.19e-32 111
Msa1413680 MtrunA17_Chr8g0368681 36.842 76 45 1 4 79 82 154 1.15e-11 59.3
Msa1413680 MtrunA17_Chr5g0434951 43.609 133 74 1 14 146 6 137 2.14e-30 107
Msa1413680 MtrunA17_Chr6g0482731 45.185 135 72 2 13 146 27 160 1.34e-29 105
Msa1413680 MtrunA17_Chr6g0482731 45.455 66 36 0 13 78 100 165 9.80e-13 62.4
Msa1413680 MtrunA17_Chr1g0169581 42.222 135 76 1 14 146 6 140 2.02e-29 104
Msa1413680 MtrunA17_Chr1g0169581 44.444 63 35 0 13 75 80 142 2.48e-11 57.8
Msa1413680 MtrunA17_Chr4g0033601 41.606 137 78 1 12 146 5 141 5.73e-29 103
Msa1413680 MtrunA17_Chr3g0100511 42.069 145 69 1 1 145 41 170 9.33e-29 103
Msa1413680 MtrunA17_Chr7g0256701 43.972 141 74 3 11 146 72 212 1.29e-28 104
Msa1413680 MtrunA17_Chr3g0111371 45.113 133 69 2 14 146 7 135 1.14e-27 100
Msa1413680 MtrunA17_Chr3g0111371 46.667 60 32 0 83 142 3 62 2.06e-11 58.2
Msa1413680 MtrunA17_Chr7g0267751 41.781 146 82 2 1 146 429 571 2.09e-27 106
Msa1413680 MtrunA17_Chr3g0100561 42.069 145 69 1 1 145 41 170 2.30e-27 100
Msa1413680 MtrunA17_Chr8g0351681 42.254 142 74 3 13 146 50 191 1.89e-26 98.6
Msa1413680 MtrunA17_Chr1g0176751 39.041 146 86 2 1 146 418 560 4.53e-26 102
Msa1413680 MtrunA17_Chr1g0200601 41.892 148 79 3 1 146 324 466 9.10e-26 101
Msa1413680 MtrunA17_Chr4g0064231 39.869 153 74 2 12 146 64 216 9.12e-26 97.4
Msa1413680 MtrunA17_Chr4g0064231 49.275 69 33 1 7 73 148 216 2.34e-11 59.3
Msa1413680 MtrunA17_Chr7g0245911 39.860 143 77 3 13 146 48 190 3.82e-25 95.1
Msa1413680 MtrunA17_Chr3g0131181 38.356 146 87 2 1 146 323 465 7.77e-25 99.0
Msa1413680 MtrunA17_Chr8g0385341 39.041 146 86 2 1 146 324 466 8.17e-25 99.0
Msa1413680 MtrunA17_Chr7g0242561 37.838 148 91 1 1 148 350 496 1.07e-24 98.6
Msa1413680 MtrunA17_Chr0c02g0489761 37.838 148 86 3 1 146 372 515 1.37e-24 98.2
Msa1413680 MtrunA17_Chr0c02g0489761 38.095 84 49 1 67 147 362 445 2.53e-11 60.5
Msa1413680 MtrunA17_Chr5g0441691 37.162 148 87 3 1 146 362 505 2.57e-24 97.4
Msa1413680 MtrunA17_Chr7g0256171 43.939 132 72 1 17 146 10 141 3.05e-24 91.7
Msa1413680 MtrunA17_Chr8g0387671 37.162 148 87 3 1 146 360 503 3.42e-24 97.1
Msa1413680 MtrunA17_Chr1g0169621 35.185 162 78 2 14 148 6 167 6.55e-24 91.3
Msa1413680 MtrunA17_Chr1g0170281 37.671 146 88 2 1 146 412 554 6.59e-24 96.7
Msa1413680 MtrunA17_Chr5g0397101 36.486 148 88 3 1 146 360 503 9.62e-24 95.9
Msa1413680 MtrunA17_Chr4g0074811 36.242 149 91 3 1 148 385 530 2.10e-23 95.1
Msa1413680 MtrunA17_Chr4g0059951 38.000 150 88 4 1 148 367 513 2.18e-23 95.1
Msa1413680 MtrunA17_Chr5g0444171 36.913 149 90 3 1 148 386 531 2.82e-23 94.7
Msa1413680 MtrunA17_Chr5g0448721 36.986 146 89 2 1 146 390 532 2.85e-23 94.7
Msa1413680 MtrunA17_Chr3g0100471 54.930 71 32 0 5 75 45 115 4.21e-23 87.8
Msa1413680 MtrunA17_Chr3g0116151 35.252 139 79 2 13 146 7 139 1.20e-22 87.4
Msa1413680 MtrunA17_Chr3g0116141 35.252 139 79 2 13 146 6 138 1.22e-22 87.0
Msa1413680 MtrunA17_Chr7g0225921 31.915 141 94 2 8 147 2 141 1.46e-22 87.0
Msa1413680 MtrunA17_Chr7g0225921 46.269 67 36 0 7 73 74 140 1.23e-12 61.2
Msa1413680 MtrunA17_Chr1g0157131 35.374 147 91 3 1 146 368 511 6.77e-22 90.5
Msa1413680 MtrunA17_Chr4g0044961 36.842 133 82 1 14 146 59 189 8.75e-22 86.7
Msa1413680 MtrunA17_Chr6g0459231 32.857 140 93 1 8 147 4 142 2.52e-21 84.0
Msa1413680 MtrunA17_Chr6g0459231 40.299 67 40 0 7 73 75 141 7.16e-12 59.3
Msa1413680 MtrunA17_Chr5g0409441 34.328 134 88 0 9 142 19 152 2.53e-21 84.3
Msa1413680 MtrunA17_Chr5g0402331 36.691 139 80 3 14 148 50 184 4.86e-21 84.3
Msa1413680 MtrunA17_Chr4g0057641 35.714 140 81 2 11 146 5 139 4.94e-21 83.2
Msa1413680 MtrunA17_Chr5g0402361 37.681 138 79 2 14 148 50 183 6.06e-21 87.0
Msa1413680 MtrunA17_Chr5g0402361 36.691 139 80 3 14 148 222 356 7.30e-20 84.3
Msa1413680 MtrunA17_Chr5g0402361 29.070 172 91 4 3 146 114 282 3.02e-14 68.6
Msa1413680 MtrunA17_Chr3g0098951 35.256 156 90 3 1 148 377 529 1.34e-20 87.0
Msa1413680 MtrunA17_Chr4g0057651 35.000 140 82 2 11 146 5 139 1.72e-20 81.6
Msa1413680 MtrunA17_Chr7g0245371 37.162 148 81 2 13 148 25 172 3.09e-20 82.0
Msa1413680 MtrunA17_Chr4g0033371 35.417 144 91 2 5 148 370 511 3.36e-20 85.9
Msa1413680 MtrunA17_Chr2g0329371 38.849 139 81 2 12 146 64 202 2.81e-19 80.5
Msa1413680 MtrunA17_Chr4g0057661 33.571 140 84 2 11 146 5 139 4.77e-19 78.2
Msa1413680 MtrunA17_Chr8g0373691 34.815 135 86 2 13 146 54 187 7.31e-19 78.6
Msa1413680 MtrunA17_Chr8g0373691 50.000 64 32 0 83 146 51 114 2.96e-13 63.9
Msa1413680 MtrunA17_Chr7g0257751 32.432 148 95 2 1 146 352 496 5.60e-18 79.3
Msa1413680 MtrunA17_Chr4g0074791 32.215 149 86 5 1 148 390 524 1.77e-17 78.2
Msa1413680 MtrunA17_Chr3g0100461 57.407 54 23 0 93 146 53 106 2.24e-17 73.2
Msa1413680 MtrunA17_Chr3g0100461 41.333 75 37 1 1 75 41 108 5.86e-12 58.9
Msa1413680 MtrunA17_Chr1g0176421 29.775 178 90 3 1 146 455 629 1.60e-16 75.5
Msa1413680 MtrunA17_Chr3g0100501 49.180 61 31 0 84 144 71 131 5.88e-16 70.1
Msa1413680 MtrunA17_Chr1g0173541 28.767 146 103 1 1 146 346 490 7.89e-16 73.2
Msa1413680 MtrunA17_Chr3g0121191 31.298 131 80 1 17 147 98 218 3.00e-15 70.1
Msa1413680 MtrunA17_Chr3g0121191 45.588 68 37 0 6 73 150 217 7.19e-13 63.5
Msa1413680 MtrunA17_Chr4g0068501 27.703 148 103 2 3 146 7 154 7.40e-15 67.8
Msa1413680 MtrunA17_Chr5g0405421 27.922 154 99 5 1 148 395 542 1.62e-14 69.7
Msa1413680 MtrunA17_Chr5g0396261 34.513 113 70 3 36 145 1 112 7.30e-14 63.9
Msa1413680 MtrunA17_Chr3g0125311 28.947 152 90 3 11 147 12 160 1.80e-12 61.2
Msa1413680 MtrunA17_Chr8g0388331 33.594 128 72 3 25 142 49 173 3.52e-12 61.6
Msa1413680 MtrunA17_Chr7g0252401 26.144 153 101 2 1 147 18 164 5.84e-12 62.0
Msa1413680 MtrunA17_Chr2g0333301 27.517 149 94 5 3 146 22 161 1.19e-11 59.3
Msa1413680 MtrunA17_Chr1g0160151 32.624 141 79 4 17 147 27 161 2.48e-11 58.5
Msa1413680 MtrunA17_Chr8g0385571 25.490 153 102 3 1 147 38 184 5.00e-11 59.7
Msa1413680 MtrunA17_Chr4g0042491 40.541 74 44 0 73 146 102 175 6.10e-11 57.8
Msa1413680 MtrunA17_Chr5g0408251 47.692 65 32 1 84 146 131 195 7.46e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413680 AT3G22930.1 82.517 143 25 0 5 147 28 170 4.70e-86 249
Msa1413680 AT4G14640.1 80.822 146 28 0 4 149 5 150 8.25e-86 248
Msa1413680 AT2G27030.3 78.000 150 33 0 1 150 1 150 3.59e-84 245
Msa1413680 AT2G27030.3 38.298 94 55 1 6 99 82 172 8.83e-12 60.5
Msa1413680 AT1G66410.1 78.378 148 32 0 1 148 1 148 1.34e-83 242
Msa1413680 AT1G66410.1 45.070 71 36 1 6 76 82 149 9.77e-12 59.7
Msa1413680 AT5G37780.1 78.378 148 32 0 1 148 1 148 1.34e-83 242
Msa1413680 AT5G37780.1 45.070 71 36 1 6 76 82 149 9.77e-12 59.7
Msa1413680 AT5G21274.1 78.378 148 32 0 1 148 1 148 2.29e-83 241
Msa1413680 AT5G21274.1 43.662 71 37 1 6 76 82 149 9.12e-11 57.0
Msa1413680 AT3G56800.1 78.378 148 32 0 1 148 1 148 2.82e-83 241
Msa1413680 AT3G56800.1 45.070 71 36 1 6 76 82 149 2.71e-11 58.5
Msa1413680 AT2G41110.1 78.378 148 32 0 1 148 1 148 2.82e-83 241
Msa1413680 AT2G41110.1 45.070 71 36 1 6 76 82 149 2.71e-11 58.5
Msa1413680 AT2G27030.1 78.378 148 32 0 1 148 1 148 2.82e-83 241
Msa1413680 AT2G27030.1 45.070 71 36 1 6 76 82 149 2.71e-11 58.5
Msa1413680 AT3G43810.1 77.703 148 33 0 1 148 1 148 6.13e-83 241
Msa1413680 AT3G43810.1 45.070 71 36 1 6 76 82 149 3.07e-11 58.2
Msa1413680 AT3G43810.2 77.703 148 33 0 1 148 1 148 1.92e-82 242
Msa1413680 AT2G41110.2 72.500 160 32 1 1 148 1 160 1.29e-79 233
Msa1413680 AT2G41110.2 45.070 71 36 1 6 76 94 161 3.39e-11 58.5
Msa1413680 AT5G37780.2 71.166 163 32 1 1 148 1 163 2.43e-79 232
Msa1413680 AT5G37780.2 45.070 71 36 1 6 76 97 164 1.49e-11 59.3
Msa1413680 AT5G37780.3 66.667 174 32 1 1 148 1 174 1.54e-77 228
Msa1413680 AT5G37780.3 45.070 71 36 1 6 76 108 175 1.84e-11 59.3
Msa1413680 AT1G66410.2 73.418 158 32 1 1 148 1 158 1.96e-75 222
Msa1413680 AT1G66410.2 45.070 71 36 1 6 76 92 159 1.24e-11 59.3
Msa1413680 AT4G14640.2 83.065 124 21 0 26 149 9 132 3.30e-74 218
Msa1413680 AT4G14640.2 45.161 62 34 0 12 73 68 129 4.37e-12 60.1
Msa1413680 AT5G37780.4 78.862 123 26 0 26 148 13 135 1.05e-69 206
Msa1413680 AT5G37780.4 45.070 71 36 1 6 76 69 136 8.31e-12 59.3
Msa1413680 AT1G66410.4 79.464 112 23 0 37 148 1 112 5.67e-63 189
Msa1413680 AT1G66410.4 45.070 71 36 1 6 76 46 113 2.70e-12 60.1
Msa1413680 AT1G66410.3 79.464 112 23 0 37 148 1 112 5.67e-63 189
Msa1413680 AT1G66410.3 45.070 71 36 1 6 76 46 113 2.70e-12 60.1
Msa1413680 AT3G43810.4 79.464 112 23 0 37 148 1 112 8.41e-63 188
Msa1413680 AT3G43810.4 45.070 71 36 1 6 76 46 113 8.69e-12 58.9
Msa1413680 AT3G43810.3 79.464 112 23 0 37 148 1 112 8.41e-63 188
Msa1413680 AT3G43810.3 45.070 71 36 1 6 76 46 113 8.69e-12 58.9
Msa1413680 AT4G14640.3 78.846 104 22 0 4 107 5 108 9.64e-58 176
Msa1413680 AT3G22930.2 78.846 104 22 0 5 108 28 131 1.99e-57 175
Msa1413680 AT3G22930.2 43.548 62 35 0 85 146 35 96 3.46e-11 57.8
Msa1413680 AT2G41090.1 50.340 147 70 1 1 147 1 144 2.60e-46 149
Msa1413680 AT3G51920.1 50.000 148 74 0 1 148 1 148 6.70e-44 142
Msa1413680 AT2G41100.7 47.853 163 68 1 1 146 55 217 1.71e-43 145
Msa1413680 AT2G41100.7 40.945 127 59 2 36 146 1 127 1.02e-25 99.4
Msa1413680 AT2G41100.7 50.526 95 44 1 3 97 147 238 6.40e-25 97.1
Msa1413680 AT2G41100.6 47.853 163 68 1 1 146 55 217 1.71e-43 145
Msa1413680 AT2G41100.6 40.945 127 59 2 36 146 1 127 1.02e-25 99.4
Msa1413680 AT2G41100.6 50.526 95 44 1 3 97 147 238 6.40e-25 97.1
Msa1413680 AT2G41100.3 47.853 163 68 1 1 146 55 217 1.71e-43 145
Msa1413680 AT2G41100.3 40.945 127 59 2 36 146 1 127 1.02e-25 99.4
Msa1413680 AT2G41100.3 50.526 95 44 1 3 97 147 238 6.40e-25 97.1
Msa1413680 AT2G41100.4 47.853 163 68 1 1 146 90 252 4.63e-43 145
Msa1413680 AT2G41100.4 43.827 162 75 2 1 146 1 162 8.00e-41 139
Msa1413680 AT2G41100.4 50.526 95 44 1 3 97 182 273 1.28e-24 97.1
Msa1413680 AT2G41100.1 47.853 163 68 1 1 146 90 252 4.63e-43 145
Msa1413680 AT2G41100.1 43.827 162 75 2 1 146 1 162 8.00e-41 139
Msa1413680 AT2G41100.1 50.526 95 44 1 3 97 182 273 1.28e-24 97.1
Msa1413680 AT3G50360.1 44.444 144 80 0 3 146 18 161 2.73e-39 130
Msa1413680 AT1G66400.1 48.551 138 69 1 12 147 15 152 3.90e-37 125
Msa1413680 AT1G66400.1 42.188 64 37 0 10 73 88 151 5.39e-11 57.8
Msa1413680 AT1G62820.1 40.278 144 84 1 5 148 6 147 6.09e-37 124
Msa1413680 AT1G12310.1 39.583 144 85 1 5 148 6 147 2.06e-36 122
Msa1413680 AT1G32250.1 39.744 156 84 2 1 146 1 156 5.30e-35 120
Msa1413680 AT5G37770.1 47.482 139 69 1 12 146 17 155 7.34e-35 119
Msa1413680 AT5G37770.1 43.077 65 37 0 10 74 92 156 8.59e-13 62.4
Msa1413680 AT5G37770.2 47.482 139 69 1 12 146 17 155 7.34e-35 119
Msa1413680 AT5G37770.2 43.077 65 37 0 10 74 92 156 8.59e-13 62.4
Msa1413680 AT1G18530.1 42.069 145 76 2 7 146 2 143 4.07e-34 117
Msa1413680 AT1G18530.1 39.474 76 43 1 4 79 77 149 3.48e-11 58.2
Msa1413680 AT4G37010.2 39.310 145 88 0 2 146 21 165 8.50e-33 114
Msa1413680 AT4G37010.1 39.310 145 88 0 2 146 17 161 9.77e-33 114
Msa1413680 AT3G03000.1 42.069 145 83 1 5 148 13 157 6.37e-32 112
Msa1413680 AT1G24620.1 43.972 141 78 1 9 149 34 173 7.36e-32 112
Msa1413680 AT1G18210.2 43.704 135 72 1 12 146 23 153 1.26e-30 108
Msa1413680 AT1G18210.1 43.704 135 72 1 12 146 23 153 1.26e-30 108
Msa1413680 AT3G25600.1 38.411 151 85 2 1 146 1 148 3.44e-30 107
Msa1413680 AT3G25600.1 38.158 76 44 1 4 79 82 154 1.16e-11 59.7
Msa1413680 AT1G73630.1 41.912 136 75 1 11 146 19 150 5.68e-29 104
Msa1413680 AT2G41100.2 46.400 125 50 1 39 146 3 127 7.19e-29 105
Msa1413680 AT2G41100.2 50.526 95 44 1 3 97 57 148 8.05e-26 97.4
Msa1413680 AT1G05990.1 40.288 139 80 2 11 146 4 142 3.18e-27 99.8
Msa1413680 AT1G05990.1 43.077 65 37 0 85 149 5 69 3.70e-11 58.2
Msa1413680 AT2G41100.5 50.515 97 45 1 1 97 1 94 4.94e-27 99.0
Msa1413680 AT2G41100.5 50.000 74 36 1 73 146 1 73 1.10e-16 72.4
Msa1413680 AT3G59440.1 40.426 141 81 2 8 146 47 186 5.85e-26 97.8
Msa1413680 AT3G59440.1 44.595 74 39 1 2 73 113 186 3.21e-12 61.6
Msa1413680 AT4G38230.1 39.726 146 85 2 1 146 174 316 7.28e-26 100
Msa1413680 AT5G23580.1 40.411 146 84 2 1 146 316 458 1.56e-25 101
Msa1413680 AT2G43290.1 39.716 141 78 3 13 146 66 206 1.58e-25 97.1
Msa1413680 AT2G43290.1 51.562 64 29 1 12 73 143 206 1.01e-12 63.5
Msa1413680 AT1G35670.1 40.411 146 84 2 1 146 320 462 1.87e-25 100
Msa1413680 AT4G38230.4 39.726 146 85 2 1 146 318 460 1.93e-25 100
Msa1413680 AT4G38230.3 39.726 146 85 2 1 146 318 460 1.93e-25 100
Msa1413680 AT5G12180.1 40.136 147 84 3 1 146 367 510 2.16e-25 100
Msa1413680 AT5G12180.1 37.209 86 51 1 67 149 357 442 9.30e-11 59.3
Msa1413680 AT4G38230.2 39.726 146 85 2 1 146 348 490 2.16e-25 100
Msa1413680 AT2G15680.1 36.806 144 89 1 5 148 43 184 3.00e-25 95.5
Msa1413680 AT3G10190.1 38.514 148 88 3 1 146 59 205 3.40e-25 95.9
Msa1413680 AT4G09570.1 41.216 148 80 3 1 146 319 461 4.42e-25 100
Msa1413680 AT5G19360.1 39.456 147 85 3 1 146 362 505 5.74e-25 99.8
Msa1413680 AT1G76040.1 37.671 146 89 2 1 146 167 310 1.26e-24 97.1
Msa1413680 AT1G76040.4 37.671 146 89 2 1 146 167 310 1.26e-24 97.1
Msa1413680 AT4G04720.2 38.255 149 88 3 1 148 373 518 3.18e-24 97.8
Msa1413680 AT4G04720.1 38.255 149 88 3 1 148 373 518 3.18e-24 97.8
Msa1413680 AT4G04700.1 40.268 149 85 3 1 148 325 470 3.42e-24 97.4
Msa1413680 AT5G04870.1 36.986 146 89 2 1 146 444 586 4.42e-24 97.4
Msa1413680 AT4G23650.1 37.162 148 87 3 1 146 372 515 4.51e-24 97.1
Msa1413680 AT4G23650.1 41.463 82 44 1 70 147 364 445 6.41e-12 62.4
Msa1413680 AT3G10660.2 36.301 146 90 2 1 146 480 622 4.97e-24 97.4
Msa1413680 AT3G10660.1 36.301 146 90 2 1 146 480 622 4.97e-24 97.4
Msa1413680 AT4G04695.1 38.255 149 88 3 1 148 325 470 5.32e-24 97.1
Msa1413680 AT3G50770.1 36.667 150 87 3 2 146 57 203 5.52e-24 92.8
Msa1413680 AT1G76040.2 37.671 146 89 2 1 146 405 548 5.66e-24 97.1
Msa1413680 AT2G17290.1 37.671 146 88 2 1 146 379 521 1.12e-23 96.3
Msa1413680 AT2G17290.2 37.671 146 88 2 1 146 379 521 1.12e-23 96.3
Msa1413680 AT4G03290.1 39.007 141 81 2 11 146 4 144 1.56e-23 90.1
Msa1413680 AT4G03290.1 48.438 64 31 1 14 75 83 146 5.37e-12 60.5
Msa1413680 AT2G41410.1 40.146 137 79 3 15 148 73 209 1.81e-23 91.7
Msa1413680 AT4G21940.2 36.913 149 90 3 1 148 395 540 5.54e-23 94.4
Msa1413680 AT4G21940.1 36.913 149 90 3 1 148 395 540 5.82e-23 94.0
Msa1413680 AT4G35310.2 36.301 146 90 2 1 146 391 533 6.01e-23 94.0
Msa1413680 AT4G35310.1 36.301 146 90 2 1 146 391 533 6.01e-23 94.0
Msa1413680 AT4G12860.1 39.552 134 79 1 15 146 8 141 6.79e-23 88.6
Msa1413680 AT4G04740.4 37.762 143 85 3 5 146 366 505 1.14e-22 93.2
Msa1413680 AT4G04740.6 37.762 143 85 3 5 146 366 505 1.14e-22 93.2
Msa1413680 AT4G04740.5 37.762 143 85 3 5 146 366 505 1.14e-22 93.2
Msa1413680 AT4G04740.3 37.762 143 85 3 5 146 366 505 1.14e-22 93.2
Msa1413680 AT4G04740.1 37.762 143 85 3 5 146 366 505 1.14e-22 93.2
Msa1413680 AT4G04740.7 37.762 143 85 3 5 146 366 505 1.14e-22 93.2
Msa1413680 AT2G38910.1 35.616 146 91 2 1 146 428 570 9.65e-22 90.9
Msa1413680 AT5G17470.1 38.060 134 81 1 15 146 5 138 1.02e-21 85.5
Msa1413680 AT3G07490.1 40.909 132 76 1 17 146 10 141 1.17e-21 85.5
Msa1413680 AT1G61950.1 35.333 150 91 3 1 148 393 538 1.62e-21 90.1
Msa1413680 AT4G20780.1 38.312 154 73 3 17 149 34 186 4.02e-21 85.1
Msa1413680 AT3G51850.1 35.135 148 95 1 1 148 348 494 4.87e-21 88.6
Msa1413680 AT3G03400.1 36.800 125 77 1 17 139 10 134 1.27e-20 82.4
Msa1413680 AT2G36180.1 40.741 135 77 1 15 146 3 137 2.36e-20 81.6
Msa1413680 AT3G03410.1 34.328 134 79 1 14 147 4 128 4.58e-20 80.9
Msa1413680 AT1G50700.1 32.432 148 98 2 1 148 367 512 1.22e-19 84.7
Msa1413680 AT3G20410.2 32.432 148 98 2 1 148 385 530 2.08e-19 84.0
Msa1413680 AT3G20410.1 32.432 148 98 2 1 148 385 530 2.08e-19 84.0
Msa1413680 AT5G12480.2 34.694 147 94 2 1 146 259 404 2.38e-19 83.6
Msa1413680 AT1G74740.1 33.333 147 95 3 1 146 353 497 2.45e-19 84.0
Msa1413680 AT5G12480.1 34.694 147 94 2 1 146 353 498 2.71e-19 83.6
Msa1413680 AT5G44460.1 39.726 146 74 4 17 149 33 177 3.01e-19 80.1
Msa1413680 AT5G42380.1 33.094 139 92 1 9 146 46 184 7.92e-19 79.0
Msa1413680 AT4G04710.2 35.374 147 91 3 1 146 326 469 1.11e-18 82.0
Msa1413680 AT4G04710.3 35.374 147 91 3 1 146 312 455 1.21e-18 81.6
Msa1413680 AT4G04710.1 35.374 147 91 3 1 146 339 482 1.30e-18 81.6
Msa1413680 AT3G57530.1 34.437 151 91 4 1 148 357 502 2.78e-18 80.9
Msa1413680 AT5G19450.2 33.333 147 96 2 1 146 351 496 1.51e-17 78.6
Msa1413680 AT5G19450.1 33.333 147 96 2 1 146 351 496 1.51e-17 78.6
Msa1413680 AT4G04710.4 35.570 149 90 4 1 146 339 484 2.07e-17 78.2
Msa1413680 AT2G31500.1 32.653 147 95 3 5 148 364 509 2.36e-17 78.2
Msa1413680 AT1G18890.1 35.099 151 87 4 1 146 357 501 2.44e-17 78.2
Msa1413680 AT2G41860.2 32.667 150 96 2 1 148 348 494 5.29e-17 77.0
Msa1413680 AT2G41860.1 32.667 150 96 2 1 148 348 494 5.66e-17 77.0
Msa1413680 AT4G04740.2 36.434 129 78 3 5 132 366 491 8.93e-17 76.6
Msa1413680 AT3G51850.2 38.679 106 64 1 1 106 348 452 2.57e-16 75.1
Msa1413680 AT2G17890.1 29.221 154 97 5 1 148 404 551 3.01e-16 75.1
Msa1413680 AT1G76640.1 31.944 144 92 2 7 146 17 158 1.47e-15 69.7
Msa1413680 AT5G66210.1 28.571 154 98 5 1 148 358 505 2.20e-15 72.4
Msa1413680 AT5G66210.2 28.571 154 98 5 1 148 358 505 2.20e-15 72.4
Msa1413680 AT1G50700.2 28.161 174 97 3 1 148 367 538 3.53e-15 72.0
Msa1413680 AT1G21550.1 32.237 152 83 4 12 149 10 155 1.47e-14 67.0
Msa1413680 AT5G49480.1 30.065 153 99 3 1 146 7 158 5.86e-14 65.5
Msa1413680 AT1G76040.3 37.624 101 62 1 1 101 405 504 2.24e-13 66.6
Msa1413680 AT4G21940.3 38.384 99 60 1 1 99 395 492 2.25e-13 66.6
Msa1413680 AT1G76650.1 33.083 133 82 2 17 146 48 176 3.19e-13 63.9
Msa1413680 AT1G76650.3 33.083 133 82 2 17 146 48 176 3.19e-13 63.9
Msa1413680 AT5G66210.3 27.481 131 89 3 1 125 358 488 9.62e-12 62.0
Msa1413680 AT3G01830.1 30.612 147 78 6 12 146 11 145 2.38e-11 58.5
Msa1413680 AT4G36070.2 26.623 154 101 5 1 148 367 514 2.69e-11 60.8
Msa1413680 AT4G36070.1 26.623 154 101 5 1 148 367 514 3.02e-11 60.5
Msa1413680 AT5G66210.5 29.565 115 75 3 1 109 358 472 8.02e-11 59.3

Find 38 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAATACAACAACGATTT+TGG 0.109408 tig0024044:-8822 Msa1413680:intergenic
GTATTAAAGAATAACAATTT+TGG 0.182669 tig0024044:-8932 Msa1413680:intergenic
TGATGAGTTCTTGAACTTGA+TGG 0.326901 tig0024044:+7635 Msa1413680:CDS
AGCCACTGTTATCAGGTCAT+TGG 0.372626 tig0024044:+7536 Msa1413680:CDS
GAATAGAGAAAGAGAATAAG+AGG 0.372864 tig0024044:-7262 Msa1413680:intergenic
TTTAGTTTGTTTGACAAAGA+TGG 0.393112 tig0024044:+7376 Msa1413680:CDS
GATGATTAAAGAAGCAGATA+TGG 0.394958 tig0024044:+8660 Msa1413680:CDS
TCATCTCAATTGGAGGATAT+TGG 0.401466 tig0024044:+8757 Msa1413680:three_prime_UTR
GGAGCTTAGAGAGGCTTTCA+AGG 0.423469 tig0024044:+7855 Msa1413680:CDS
GTCTTTGACAAAGATCAAAA+TGG 0.424272 tig0024044:+7877 Msa1413680:CDS
CAAGAACTCATCAAATTCAA+TGG 0.434228 tig0024044:-7625 Msa1413680:intergenic
AAGAATTAGCCACTGTTATC+AGG 0.445790 tig0024044:+7529 Msa1413680:CDS
CAACAATTTGTTCTTCACTA+AGG 0.446590 tig0024044:-7339 Msa1413680:intergenic
TATTGGTCATTCAAATTCGT+TGG 0.447181 tig0024044:+8774 Msa1413680:three_prime_UTR
TCTTGTAGCTCTTCTTCAGT+GGG 0.469600 tig0024044:-7567 Msa1413680:intergenic
AGTTCTTGAACTTGATGGCT+AGG 0.482060 tig0024044:+7640 Msa1413680:CDS
GTGGTTAACTAACTAATGCT+TGG 0.505143 tig0024044:-8893 Msa1413680:intergenic
ATCTTGTAGCTCTTCTTCAG+TGG 0.512984 tig0024044:-7568 Msa1413680:intergenic
AATAGAGAAAGAGAATAAGA+GGG 0.527814 tig0024044:-7261 Msa1413680:intergenic
ATCTTTGTCAAACAAACTAA+AGG 0.531026 tig0024044:-7374 Msa1413680:intergenic
AGACACGTGATGATCAATCT+AGG 0.540494 tig0024044:+8607 Msa1413680:CDS
ACAAATTGTTGATTTCAAAG+AGG 0.544777 tig0024044:+7351 Msa1413680:CDS
TGGGTTGGGAACTAGATATG+TGG 0.544994 tig0024044:-8912 Msa1413680:intergenic
TCTTTGAGAGAGAAATAGAG+AGG 0.547431 tig0024044:-7294 Msa1413680:intergenic
CATTTAGGACACTGATGCAG+AGG 0.570696 tig0024044:+7831 Msa1413680:intron
GAAGTTGATGCAGATGGCAA+TGG 0.578787 tig0024044:+7600 Msa1413680:CDS
CTCAAAGACAAAACATACCA+TGG 0.585099 tig0024044:+7309 Msa1413680:exon
TATAGTTGTATTGTACCTAG+TGG 0.585647 tig0024044:+8842 Msa1413680:three_prime_UTR
TTGTTTGACAAAGATGGAGA+TGG 0.596377 tig0024044:+7382 Msa1413680:CDS
TTCACTAAGGACATGTGCCA+TGG 0.599624 tig0024044:-7326 Msa1413680:intergenic
ATTAAAGAAGCAGATATGGA+TGG 0.602493 tig0024044:+8664 Msa1413680:CDS
GAAGCAGATATGGATGGTGA+TGG 0.608277 tig0024044:+8670 Msa1413680:CDS
TTAGGACACTGATGCAGAGG+AGG 0.624491 tig0024044:+7834 Msa1413680:intron
TGCAGAGGAGGAGCTTAGAG+AGG 0.630033 tig0024044:+7846 Msa1413680:CDS
ATAAGTGAAGTTGATGCAGA+TGG 0.649786 tig0024044:+7594 Msa1413680:CDS
TGGCTATATATCAGCCAGTG+AGG 0.688712 tig0024044:+7897 Msa1413680:CDS
GCAAACAGGTTGCATTACTG+TGG 0.701892 tig0024044:+7506 Msa1413680:intron
ATCCAATGACCTGATAACAG+TGG 0.720716 tig0024044:-7538 Msa1413670:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATAATGAATAGAA+TGG - tig0024044:7701-7720 Msa1413680:intergenic 10.0%
!!! AATTTTAGAAAATCTAATAT+GGG - tig0024044:7984-8003 Msa1413680:intergenic 10.0%
!!! AAATTTTAGAAAATCTAATA+TGG - tig0024044:7985-8004 Msa1413680:intergenic 10.0%
!!! TCTAAAATTTTATTTTTTGA+TGG + tig0024044:7995-8014 Msa1413680:intron 10.0%
!! TAAATAAATAATGAATAGAA+TGG - tig0024044:7701-7720 Msa1413680:intergenic 10.0%
!!! AATTTTAGAAAATCTAATAT+GGG - tig0024044:7984-8003 Msa1413680:intergenic 10.0%
!!! AAATTTTAGAAAATCTAATA+TGG - tig0024044:7985-8004 Msa1413680:intergenic 10.0%
!!! TCTAAAATTTTATTTTTTGA+TGG + tig0024044:7995-8014 Msa1413680:intron 10.0%
!!! CTGTTATTTTATTTTCATTT+AGG + tig0024044:7816-7835 Msa1413680:intron 15.0%
!!! AAAATTTTATTTTTTGATGG+TGG + tig0024044:7998-8017 Msa1413680:intron 15.0%
!! TTATTAAGGTGAAAAAAAAA+TGG - tig0024044:8103-8122 Msa1413680:intergenic 15.0%
!! AAAAAGAAAAACTATGTAAA+TGG - tig0024044:8126-8145 Msa1413680:intergenic 15.0%
!!! ATAGCATCATTTTTTTTTTA+TGG - tig0024044:8869-8888 Msa1413680:intergenic 15.0%
!!! CTGTTATTTTATTTTCATTT+AGG + tig0024044:7816-7835 Msa1413680:intron 15.0%
!!! AAAATTTTATTTTTTGATGG+TGG + tig0024044:7998-8017 Msa1413680:intron 15.0%
!! TTATTAAGGTGAAAAAAAAA+TGG - tig0024044:8103-8122 Msa1413680:intergenic 15.0%
!! AAAAAGAAAAACTATGTAAA+TGG - tig0024044:8126-8145 Msa1413680:intergenic 15.0%
!!! ATAGCATCATTTTTTTTTTA+TGG - tig0024044:8869-8888 Msa1413680:intergenic 15.0%
!! TAAATAATGAATAGAATGGA+AGG - tig0024044:7697-7716 Msa1413680:intergenic 20.0%
!! AACTATGTAAATGGTTATTA+AGG - tig0024044:8117-8136 Msa1413680:intergenic 20.0%
!! ATAGAAATTAAGATAGCAAT+GGG + tig0024044:8445-8464 Msa1413680:intron 20.0%
!!! TTTTTTTTTTCTTCATCGAA+TGG - tig0024044:8734-8753 Msa1413680:intergenic 20.0%
!! AAAAAAAATCTCATCTCAAT+TGG + tig0024044:8747-8766 Msa1413680:three_prime_UTR 20.0%
!!! ATAAAATACAACAACGATTT+TGG - tig0024044:8825-8844 Msa1413680:intergenic 20.0%
!! TAAATAATGAATAGAATGGA+AGG - tig0024044:7697-7716 Msa1413680:intergenic 20.0%
!! AACTATGTAAATGGTTATTA+AGG - tig0024044:8117-8136 Msa1413680:intergenic 20.0%
!! ATAGAAATTAAGATAGCAAT+GGG + tig0024044:8445-8464 Msa1413680:intron 20.0%
!!! TTTTTTTTTTCTTCATCGAA+TGG - tig0024044:8734-8753 Msa1413680:intergenic 20.0%
!! AAAAAAAATCTCATCTCAAT+TGG + tig0024044:8747-8766 Msa1413680:three_prime_UTR 20.0%
!!! ATAAAATACAACAACGATTT+TGG - tig0024044:8825-8844 Msa1413680:intergenic 20.0%
!!! ACAAATTGTTGATTTCAAAG+AGG + tig0024044:7351-7370 Msa1413680:CDS 25.0%
! ATCTTTGTCAAACAAACTAA+AGG - tig0024044:7377-7396 Msa1413680:intergenic 25.0%
!!! TTTAGTTTGTTTGACAAAGA+TGG + tig0024044:7376-7395 Msa1413680:CDS 25.0%
! CTTTCAATATCAAAGTTCTA+AGG + tig0024044:7731-7750 Msa1413680:intron 25.0%
!! AACAATTTTATATACCTCAC+TGG - tig0024044:7914-7933 Msa1413680:intergenic 25.0%
!! ATATTTTCATTTCCTCTGTT+TGG + tig0024044:8262-8281 Msa1413680:intron 25.0%
!! TATTTTCATTTCCTCTGTTT+GGG + tig0024044:8263-8282 Msa1413680:intron 25.0%
! GATAGAAATTAAGATAGCAA+TGG + tig0024044:8444-8463 Msa1413680:intron 25.0%
! TACAATACAAGATATATACG+TGG - tig0024044:8510-8529 Msa1413680:intergenic 25.0%
! ATATCTTGTATTGTACATGA+AGG + tig0024044:8515-8534 Msa1413680:intron 25.0%
!!! TTTTTTTTTTATGGACCACT+AGG - tig0024044:8860-8879 Msa1413680:intergenic 25.0%
!!! ACAAATTGTTGATTTCAAAG+AGG + tig0024044:7351-7370 Msa1413680:CDS 25.0%
! ATCTTTGTCAAACAAACTAA+AGG - tig0024044:7377-7396 Msa1413680:intergenic 25.0%
!!! TTTAGTTTGTTTGACAAAGA+TGG + tig0024044:7376-7395 Msa1413680:CDS 25.0%
! CTTTCAATATCAAAGTTCTA+AGG + tig0024044:7731-7750 Msa1413680:intron 25.0%
!! AACAATTTTATATACCTCAC+TGG - tig0024044:7914-7933 Msa1413680:intergenic 25.0%
!! ATATTTTCATTTCCTCTGTT+TGG + tig0024044:8262-8281 Msa1413680:intron 25.0%
!! TATTTTCATTTCCTCTGTTT+GGG + tig0024044:8263-8282 Msa1413680:intron 25.0%
! GATAGAAATTAAGATAGCAA+TGG + tig0024044:8444-8463 Msa1413680:intron 25.0%
! TACAATACAAGATATATACG+TGG - tig0024044:8510-8529 Msa1413680:intergenic 25.0%
! ATATCTTGTATTGTACATGA+AGG + tig0024044:8515-8534 Msa1413680:intron 25.0%
!!! TTTTTTTTTTATGGACCACT+AGG - tig0024044:8860-8879 Msa1413680:intergenic 25.0%
! CAACAATTTGTTCTTCACTA+AGG - tig0024044:7342-7361 Msa1413680:intergenic 30.0%
GTGATGAGAATTCTGTTAAA+AGG - tig0024044:7422-7441 Msa1413680:intergenic 30.0%
TCATACATCATCATATGCAT+AGG + tig0024044:7444-7463 Msa1413680:intron 30.0%
CAAGAACTCATCAAATTCAA+TGG - tig0024044:7628-7647 Msa1413680:intergenic 30.0%
!! ATCAAAGTTCTAAGGTCTAT+AGG + tig0024044:7739-7758 Msa1413680:intron 30.0%
CAATAACCAAAGACTAAGTT+TGG + tig0024044:7791-7810 Msa1413680:intron 30.0%
GTCTTTGACAAAGATCAAAA+TGG + tig0024044:7877-7896 Msa1413680:CDS 30.0%
GACAATGCATAATATATGCA+AGG - tig0024044:8043-8062 Msa1413680:intergenic 30.0%
ACAAGATATATACGTGGAAA+AGG - tig0024044:8504-8523 Msa1413680:intergenic 30.0%
TTGGATAGTGAAATATACGA+TGG + tig0024044:8552-8571 Msa1413680:intron 30.0%
TGAAAAACTAAGTGATGAAG+AGG + tig0024044:8630-8649 Msa1413680:CDS 30.0%
GATGATTAAAGAAGCAGATA+TGG + tig0024044:8660-8679 Msa1413680:CDS 30.0%
ATTAAAGAAGCAGATATGGA+TGG + tig0024044:8664-8683 Msa1413680:CDS 30.0%
AAAAATCTCATCTCAATTGG+AGG + tig0024044:8750-8769 Msa1413680:three_prime_UTR 30.0%
TATTGGTCATTCAAATTCGT+TGG + tig0024044:8774-8793 Msa1413680:three_prime_UTR 30.0%
!! ATACAACAACGATTTTGGAA+AGG - tig0024044:8820-8839 Msa1413680:intergenic 30.0%
TATAGTTGTATTGTACCTAG+TGG + tig0024044:8842-8861 Msa1413680:three_prime_UTR 30.0%
GAATAGAGAAAGAGAATAAG+AGG - tig0024044:7265-7284 Msa1413680:intergenic 30.0%
! CAACAATTTGTTCTTCACTA+AGG - tig0024044:7342-7361 Msa1413680:intergenic 30.0%
GTGATGAGAATTCTGTTAAA+AGG - tig0024044:7422-7441 Msa1413680:intergenic 30.0%
TCATACATCATCATATGCAT+AGG + tig0024044:7444-7463 Msa1413680:intron 30.0%
CAAGAACTCATCAAATTCAA+TGG - tig0024044:7628-7647 Msa1413680:intergenic 30.0%
!! ATCAAAGTTCTAAGGTCTAT+AGG + tig0024044:7739-7758 Msa1413680:intron 30.0%
CAATAACCAAAGACTAAGTT+TGG + tig0024044:7791-7810 Msa1413680:intron 30.0%
GTCTTTGACAAAGATCAAAA+TGG + tig0024044:7877-7896 Msa1413680:CDS 30.0%
GACAATGCATAATATATGCA+AGG - tig0024044:8043-8062 Msa1413680:intergenic 30.0%
ACAAGATATATACGTGGAAA+AGG - tig0024044:8504-8523 Msa1413680:intergenic 30.0%
TTGGATAGTGAAATATACGA+TGG + tig0024044:8552-8571 Msa1413680:intron 30.0%
TGAAAAACTAAGTGATGAAG+AGG + tig0024044:8630-8649 Msa1413680:CDS 30.0%
GATGATTAAAGAAGCAGATA+TGG + tig0024044:8660-8679 Msa1413680:CDS 30.0%
ATTAAAGAAGCAGATATGGA+TGG + tig0024044:8664-8683 Msa1413680:CDS 30.0%
AAAAATCTCATCTCAATTGG+AGG + tig0024044:8750-8769 Msa1413680:three_prime_UTR 30.0%
TATTGGTCATTCAAATTCGT+TGG + tig0024044:8774-8793 Msa1413680:three_prime_UTR 30.0%
!! ATACAACAACGATTTTGGAA+AGG - tig0024044:8820-8839 Msa1413680:intergenic 30.0%
TATAGTTGTATTGTACCTAG+TGG + tig0024044:8842-8861 Msa1413680:three_prime_UTR 30.0%
! TCTTTGAGAGAGAAATAGAG+AGG - tig0024044:7297-7316 Msa1064790:intergenic 35.0%
CTCAAAGACAAAACATACCA+TGG + tig0024044:7309-7328 Msa1413680:exon 35.0%
TTGTTTGACAAAGATGGAGA+TGG + tig0024044:7382-7401 Msa1413680:CDS 35.0%
ATCTTGTTGAATGTGCAAAC+AGG + tig0024044:7492-7511 Msa1413680:intron 35.0%
AAGAATTAGCCACTGTTATC+AGG + tig0024044:7529-7548 Msa1413680:CDS 35.0%
!! ATAAGTGAAGTTGATGCAGA+TGG + tig0024044:7594-7613 Msa1413680:CDS 35.0%
TGATGAGTTCTTGAACTTGA+TGG + tig0024044:7635-7654 Msa1413680:CDS 35.0%
! ACAGAACCAAACTTAGTCTT+TGG - tig0024044:7800-7819 Msa1413680:intergenic 35.0%
!!! TTATTTTTTGATGGTGGTCG+AGG + tig0024044:8004-8023 Msa1413680:intron 35.0%
CATAATATATGCAAGGTCTG+GGG - tig0024044:8036-8055 Msa1413680:intergenic 35.0%
GCATAATATATGCAAGGTCT+GGG - tig0024044:8037-8056 Msa1413680:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG - tig0024044:8038-8057 Msa1413680:intergenic 35.0%
! TGAGTTTAGTTCAGTTGGTA+AGG - tig0024044:8065-8084 Msa1413680:intergenic 35.0%
! TCTTGTGAGTTTAGTTCAGT+TGG - tig0024044:8070-8089 Msa1413680:intergenic 35.0%
AATGATTACTTCCCAAACAG+AGG - tig0024044:8277-8296 Msa1413680:intergenic 35.0%
TTATATCCACATGCACATCT+AGG + tig0024044:8369-8388 Msa1413680:intron 35.0%
! GAAGGCATAAACATGCATAT+TGG + tig0024044:8533-8552 Msa1413680:intron 35.0%
TCATCTCAATTGGAGGATAT+TGG + tig0024044:8757-8776 Msa1413680:three_prime_UTR 35.0%
!! ACGATTTTGGAAAGGTAATG+AGG - tig0024044:8812-8831 Msa1413680:intergenic 35.0%
GTGGTTAACTAACTAATGCT+TGG - tig0024044:8896-8915 Msa1413680:intergenic 35.0%
! TCTTTGAGAGAGAAATAGAG+AGG - tig0024044:7297-7316 Msa1413680:intergenic 35.0%
CTCAAAGACAAAACATACCA+TGG + tig0024044:7309-7328 Msa1413680:exon 35.0%
TTGTTTGACAAAGATGGAGA+TGG + tig0024044:7382-7401 Msa1413680:CDS 35.0%
ATCTTGTTGAATGTGCAAAC+AGG + tig0024044:7492-7511 Msa1413680:intron 35.0%
AAGAATTAGCCACTGTTATC+AGG + tig0024044:7529-7548 Msa1413680:CDS 35.0%
!! ATAAGTGAAGTTGATGCAGA+TGG + tig0024044:7594-7613 Msa1413680:CDS 35.0%
TGATGAGTTCTTGAACTTGA+TGG + tig0024044:7635-7654 Msa1413680:CDS 35.0%
! ACAGAACCAAACTTAGTCTT+TGG - tig0024044:7800-7819 Msa1413680:intergenic 35.0%
!!! TTATTTTTTGATGGTGGTCG+AGG + tig0024044:8004-8023 Msa1413680:intron 35.0%
CATAATATATGCAAGGTCTG+GGG - tig0024044:8036-8055 Msa1413680:intergenic 35.0%
GCATAATATATGCAAGGTCT+GGG - tig0024044:8037-8056 Msa1413680:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG - tig0024044:8038-8057 Msa1413680:intergenic 35.0%
! TGAGTTTAGTTCAGTTGGTA+AGG - tig0024044:8065-8084 Msa1413680:intergenic 35.0%
! TCTTGTGAGTTTAGTTCAGT+TGG - tig0024044:8070-8089 Msa1413680:intergenic 35.0%
AATGATTACTTCCCAAACAG+AGG - tig0024044:8277-8296 Msa1413680:intergenic 35.0%
TTATATCCACATGCACATCT+AGG + tig0024044:8369-8388 Msa1413680:intron 35.0%
! GAAGGCATAAACATGCATAT+TGG + tig0024044:8533-8552 Msa1413680:intron 35.0%
TCATCTCAATTGGAGGATAT+TGG + tig0024044:8757-8776 Msa1413680:three_prime_UTR 35.0%
!! ACGATTTTGGAAAGGTAATG+AGG - tig0024044:8812-8831 Msa1413680:intergenic 35.0%
GTGGTTAACTAACTAATGCT+TGG - tig0024044:8896-8915 Msa1413680:intergenic 35.0%
ATCCAATGACCTGATAACAG+TGG - tig0024044:7541-7560 Msa1413680:intergenic 40.0%
TCTTGTAGCTCTTCTTCAGT+GGG - tig0024044:7570-7589 Msa1413680:intergenic 40.0%
ATCTTGTAGCTCTTCTTCAG+TGG - tig0024044:7571-7590 Msa1413680:intergenic 40.0%
! AGTTCTTGAACTTGATGGCT+AGG + tig0024044:7640-7659 Msa1413680:CDS 40.0%
CAGCTAATATTCACTGCATG+TGG - tig0024044:8413-8432 Msa1413680:intergenic 40.0%
AGACACGTGATGATCAATCT+AGG + tig0024044:8607-8626 Msa1413680:CDS 40.0%
ATCCAATGACCTGATAACAG+TGG - tig0024044:7541-7560 Msa1413680:intergenic 40.0%
TCTTGTAGCTCTTCTTCAGT+GGG - tig0024044:7570-7589 Msa1413680:intergenic 40.0%
ATCTTGTAGCTCTTCTTCAG+TGG - tig0024044:7571-7590 Msa1413680:intergenic 40.0%
! AGTTCTTGAACTTGATGGCT+AGG + tig0024044:7640-7659 Msa1413680:CDS 40.0%
CAGCTAATATTCACTGCATG+TGG - tig0024044:8413-8432 Msa1413680:intergenic 40.0%
AGACACGTGATGATCAATCT+AGG + tig0024044:8607-8626 Msa1413680:CDS 40.0%
TTCACTAAGGACATGTGCCA+TGG - tig0024044:7329-7348 Msa1413680:intergenic 45.0%
GCAAACAGGTTGCATTACTG+TGG + tig0024044:7506-7525 Msa1413680:intron 45.0%
AGCCACTGTTATCAGGTCAT+TGG + tig0024044:7536-7555 Msa1413680:CDS 45.0%
!! GAAGTTGATGCAGATGGCAA+TGG + tig0024044:7600-7619 Msa1413680:CDS 45.0%
! CATTTAGGACACTGATGCAG+AGG + tig0024044:7831-7850 Msa1413680:intron 45.0%
TGGCTATATATCAGCCAGTG+AGG + tig0024044:7897-7916 Msa1413680:CDS 45.0%
TACTGTCCTAGATGTGCATG+TGG - tig0024044:8378-8397 Msa1413680:intergenic 45.0%
TCACTGCATGTGGAAACGTA+CGG - tig0024044:8403-8422 Msa1413680:intergenic 45.0%
GAAGCAGATATGGATGGTGA+TGG + tig0024044:8670-8689 Msa1413680:CDS 45.0%
! TGGGTTGGGAACTAGATATG+TGG - tig0024044:8915-8934 Msa1413680:intergenic 45.0%
TTCACTAAGGACATGTGCCA+TGG - tig0024044:7329-7348 Msa1413680:intergenic 45.0%
GCAAACAGGTTGCATTACTG+TGG + tig0024044:7506-7525 Msa1413680:intron 45.0%
AGCCACTGTTATCAGGTCAT+TGG + tig0024044:7536-7555 Msa1413680:CDS 45.0%
!! GAAGTTGATGCAGATGGCAA+TGG + tig0024044:7600-7619 Msa1413680:CDS 45.0%
! CATTTAGGACACTGATGCAG+AGG + tig0024044:7831-7850 Msa1413680:intron 45.0%
TGGCTATATATCAGCCAGTG+AGG + tig0024044:7897-7916 Msa1413680:CDS 45.0%
TACTGTCCTAGATGTGCATG+TGG - tig0024044:8378-8397 Msa1413680:intergenic 45.0%
TCACTGCATGTGGAAACGTA+CGG - tig0024044:8403-8422 Msa1413680:intergenic 45.0%
GAAGCAGATATGGATGGTGA+TGG + tig0024044:8670-8689 Msa1413680:CDS 45.0%
! TGGGTTGGGAACTAGATATG+TGG - tig0024044:8915-8934 Msa1413680:intergenic 45.0%
!! TTAAAATTTGTATTTAAAAA+TGG - tig0024044:8165-8184 Msa1413680:intergenic 5.0%
!! TTAAAATTTGTATTTAAAAA+TGG - tig0024044:8165-8184 Msa1413680:intergenic 5.0%
TTAGGACACTGATGCAGAGG+AGG + tig0024044:7834-7853 Msa1413680:intron 50.0%
GGAGCTTAGAGAGGCTTTCA+AGG + tig0024044:7855-7874 Msa1413680:CDS 50.0%
TTAGGACACTGATGCAGAGG+AGG + tig0024044:7834-7853 Msa1413680:intron 50.0%
GGAGCTTAGAGAGGCTTTCA+AGG + tig0024044:7855-7874 Msa1413680:CDS 50.0%
TGCAGAGGAGGAGCTTAGAG+AGG + tig0024044:7846-7865 Msa1413680:CDS 55.0%
TGCAGAGGAGGAGCTTAGAG+AGG + tig0024044:7846-7865 Msa1413680:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0024044 gene 7263 8946 7263 ID=Msa1413680;Name=Msa1413680
tig0024044 mRNA 7263 8946 7263 ID=Msa1413680-mRNA-1;Parent=Msa1413680;Name=Msa1413680-mRNA-1;_AED=0.12;_eAED=0.12;_QI=65|1|1|1|1|1|4|205|150
tig0024044 exon 7263 7403 7263 ID=Msa1413680-mRNA-1:exon:21362;Parent=Msa1413680-mRNA-1
tig0024044 exon 7514 7671 7514 ID=Msa1413680-mRNA-1:exon:21363;Parent=Msa1413680-mRNA-1
tig0024044 exon 7838 7918 7838 ID=Msa1413680-mRNA-1:exon:21364;Parent=Msa1413680-mRNA-1
tig0024044 exon 8604 8946 8604 ID=Msa1413680-mRNA-1:exon:21365;Parent=Msa1413680-mRNA-1
tig0024044 five_prime_UTR 7263 7327 7263 ID=Msa1413680-mRNA-1:five_prime_utr;Parent=Msa1413680-mRNA-1
tig0024044 CDS 7328 7403 7328 ID=Msa1413680-mRNA-1:cds;Parent=Msa1413680-mRNA-1
tig0024044 CDS 7514 7671 7514 ID=Msa1413680-mRNA-1:cds;Parent=Msa1413680-mRNA-1
tig0024044 CDS 7838 7918 7838 ID=Msa1413680-mRNA-1:cds;Parent=Msa1413680-mRNA-1
tig0024044 CDS 8604 8741 8604 ID=Msa1413680-mRNA-1:cds;Parent=Msa1413680-mRNA-1
tig0024044 three_prime_UTR 8742 8946 8742 ID=Msa1413680-mRNA-1:three_prime_utr;Parent=Msa1413680-mRNA-1
Gene Sequence

>Msa1413680

ATGGCACATGTCCTTAGTGAAGAACAAATTGTTGATTTCAAAGAGGCCTTTAGTTTGTTTGACAAAGATGGAGATGGTTGCATTACTGTGGAAGAATTAGCCACTGTTATCAGGTCATTGGATCAGAATCCCACTGAAGAAGAGCTACAAGATATGATAAGTGAAGTTGATGCAGATGGCAATGGAACCATTGAATTTGATGAGTTCTTGAACTTGATGGCTAGGAAAATGAAAGACACTGATGCAGAGGAGGAGCTTAGAGAGGCTTTCAAGGTCTTTGACAAAGATCAAAATGGCTATATATCAGCCAGTGAGTTGAGACACGTGATGATCAATCTAGGTGAAAAACTAAGTGATGAAGAGGTAGAGCAGATGATTAAAGAAGCAGATATGGATGGTGATGGTCAAGTTGACTTTGATGAATTCGTCAAGATGATGATGACCATTCGATGA
Protein sequence

>Msa1413680

MAHVLSEEQIVDFKEAFSLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLNLMARKMKDTDAEEELREAFKVFDKDQNGYISASELRHVMINLGEKLSDEEVEQMIKEADMDGDGQVDFDEFVKMMMTIR*