Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128970 | XP_003591541.1 | 96.407 | 167 | 3 | 1 | 1 | 167 | 1 | 164 | 1.66e-110 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128970 | sp|Q8LGG8|USPAL_ARATH | 28.676 | 136 | 95 | 2 | 30 | 165 | 30 | 163 | 1.05e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128970 | G7IF74 | 96.407 | 167 | 3 | 1 | 1 | 167 | 1 | 164 | 7.91e-111 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0082240 | Msa0128970 | 0.891773 | 2.923037e-74 | -8.615850e-47 |
| Msa0082410 | Msa0128970 | 0.889385 | 2.539094e-73 | -8.615850e-47 |
| Msa0128810 | Msa0128970 | 0.956973 | 8.284502e-115 | -8.615850e-47 |
| Msa0128970 | Msa0174810 | 0.917217 | 6.945118e-86 | -8.615850e-47 |
| Msa0128970 | Msa0477660 | 0.803625 | 3.187514e-49 | -8.615850e-47 |
| Msa0128970 | Msa0521720 | 0.805535 | 1.273914e-49 | -8.615850e-47 |
| Msa0128970 | Msa1370820 | 0.917381 | 5.691379e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128970 | MtrunA17_Chr1g0195661 | 96.407 | 167 | 3 | 1 | 1 | 167 | 1 | 164 | 1.52e-114 | 322 |
| Msa0128970 | MtrunA17_Chr7g0269301 | 68.831 | 154 | 45 | 2 | 16 | 168 | 9 | 160 | 2.22e-65 | 197 |
| Msa0128970 | MtrunA17_Chr1g0194801 | 40.252 | 159 | 90 | 3 | 11 | 166 | 2 | 158 | 4.53e-34 | 118 |
| Msa0128970 | MtrunA17_Chr1g0192651 | 39.877 | 163 | 90 | 4 | 10 | 170 | 5 | 161 | 5.02e-33 | 115 |
| Msa0128970 | MtrunA17_Chr1g0176321 | 40.588 | 170 | 77 | 5 | 18 | 167 | 6 | 171 | 4.73e-32 | 113 |
| Msa0128970 | MtrunA17_Chr1g0176311 | 37.888 | 161 | 88 | 3 | 18 | 167 | 25 | 184 | 1.21e-29 | 107 |
| Msa0128970 | MtrunA17_Chr5g0427291 | 32.716 | 162 | 96 | 3 | 16 | 164 | 9 | 170 | 5.49e-22 | 87.4 |
| Msa0128970 | MtrunA17_Chr2g0323291 | 29.697 | 165 | 97 | 4 | 19 | 170 | 29 | 187 | 9.03e-16 | 72.4 |
| Msa0128970 | MtrunA17_Chr4g0001641 | 49.206 | 63 | 32 | 0 | 102 | 164 | 3 | 65 | 1.40e-15 | 68.2 |
| Msa0128970 | MtrunA17_Chr4g0032261 | 32.258 | 155 | 92 | 4 | 19 | 165 | 9 | 158 | 2.52e-15 | 69.7 |
| Msa0128970 | MtrunA17_Chr6g0450171 | 24.051 | 158 | 109 | 3 | 17 | 165 | 8 | 163 | 1.59e-12 | 62.8 |
| Msa0128970 | MtrunA17_Chr5g0433951 | 29.032 | 155 | 95 | 5 | 19 | 164 | 9 | 157 | 2.71e-12 | 61.6 |
| Msa0128970 | MtrunA17_Chr2g0294421 | 29.870 | 154 | 95 | 5 | 19 | 164 | 9 | 157 | 9.67e-12 | 60.1 |
| Msa0128970 | MtrunA17_Chr7g0240701 | 29.936 | 157 | 91 | 6 | 19 | 164 | 9 | 157 | 1.80e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128970 | AT2G47710.1 | 62.346 | 162 | 56 | 2 | 8 | 167 | 1 | 159 | 1.41e-69 | 208 |
| Msa0128970 | AT3G11930.1 | 40.331 | 181 | 89 | 6 | 7 | 170 | 20 | 198 | 9.14e-34 | 119 |
| Msa0128970 | AT3G11930.2 | 39.560 | 182 | 90 | 5 | 7 | 170 | 20 | 199 | 1.31e-33 | 118 |
| Msa0128970 | AT3G11930.4 | 39.891 | 183 | 89 | 6 | 7 | 170 | 20 | 200 | 2.03e-33 | 118 |
| Msa0128970 | AT1G09740.2 | 37.037 | 162 | 93 | 4 | 17 | 170 | 10 | 170 | 6.38e-28 | 103 |
| Msa0128970 | AT1G09740.1 | 37.037 | 162 | 93 | 4 | 17 | 170 | 10 | 170 | 6.38e-28 | 103 |
| Msa0128970 | AT3G11930.3 | 35.071 | 211 | 85 | 8 | 7 | 170 | 20 | 225 | 1.22e-27 | 103 |
| Msa0128970 | AT3G58450.1 | 37.278 | 169 | 85 | 5 | 17 | 170 | 32 | 194 | 8.06e-26 | 98.6 |
| Msa0128970 | AT3G62550.1 | 36.905 | 168 | 85 | 8 | 7 | 165 | 2 | 157 | 2.85e-25 | 95.9 |
| Msa0128970 | AT3G58450.2 | 35.503 | 169 | 81 | 6 | 17 | 170 | 32 | 187 | 6.73e-25 | 95.9 |
| Msa0128970 | AT5G49050.1 | 42.735 | 117 | 62 | 2 | 13 | 127 | 37 | 150 | 3.13e-24 | 92.8 |
| Msa0128970 | AT1G68300.1 | 32.278 | 158 | 100 | 4 | 11 | 164 | 3 | 157 | 4.35e-18 | 77.4 |
| Msa0128970 | AT1G11360.2 | 32.558 | 172 | 92 | 6 | 10 | 166 | 33 | 195 | 6.97e-18 | 78.6 |
| Msa0128970 | AT1G11360.1 | 32.558 | 172 | 92 | 6 | 10 | 166 | 33 | 195 | 6.97e-18 | 78.6 |
| Msa0128970 | AT1G11360.4 | 32.558 | 172 | 92 | 6 | 10 | 166 | 33 | 195 | 6.97e-18 | 78.6 |
| Msa0128970 | AT1G11360.3 | 32.558 | 172 | 92 | 6 | 10 | 166 | 33 | 195 | 6.97e-18 | 78.6 |
| Msa0128970 | AT5G14680.1 | 27.647 | 170 | 99 | 5 | 12 | 165 | 2 | 163 | 4.75e-16 | 72.4 |
| Msa0128970 | AT3G01520.1 | 28.676 | 136 | 95 | 2 | 30 | 165 | 30 | 163 | 1.07e-14 | 68.9 |
| Msa0128970 | AT3G17020.1 | 28.477 | 151 | 102 | 2 | 19 | 164 | 11 | 160 | 1.58e-12 | 62.8 |
| Msa0128970 | AT3G53990.1 | 25.325 | 154 | 102 | 4 | 19 | 164 | 9 | 157 | 4.63e-12 | 61.2 |
| Msa0128970 | AT2G21620.2 | 30.323 | 155 | 91 | 4 | 17 | 171 | 42 | 179 | 1.05e-11 | 61.2 |
| Msa0128970 | AT2G21620.1 | 29.677 | 155 | 86 | 4 | 17 | 171 | 42 | 173 | 1.15e-11 | 60.8 |
Find 42 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTGATACTTTATGAAAA+TGG | 0.199567 | 1_3:-58815472 | Msa0128970:three_prime_UTR |
| TTCATGTACAAAGTAAAATA+AGG | 0.287810 | 1_3:+58815553 | None:intergenic |
| TTGTAGGTAGTCACGGTTAT+GGG | 0.301582 | 1_3:-58816317 | Msa0128970:CDS |
| AGTTTATCCTATGGCATGTT+TGG | 0.308645 | 1_3:-58815637 | Msa0128970:three_prime_UTR |
| TATAGATCAGTGCTTGGTTT+TGG | 0.317804 | 1_3:+58815739 | None:intergenic |
| TCGATTGCAACTAACATTAC+TGG | 0.334213 | 1_3:+58817515 | None:intergenic |
| GTTGTAGGTAGTCACGGTTA+TGG | 0.361010 | 1_3:-58816318 | Msa0128970:CDS |
| AACCAAGCACTGATCTATAT+TGG | 0.366357 | 1_3:-58815735 | Msa0128970:CDS |
| CGTGCTTCAATCTTGGTTGT+AGG | 0.387207 | 1_3:-58816333 | Msa0128970:CDS |
| CTCAAATCAGAATCCACAAT+TGG | 0.390759 | 1_3:+58817246 | None:intergenic |
| AAAGTATCGTGCTTCAATCT+TGG | 0.402940 | 1_3:-58816340 | Msa0128970:CDS |
| ACTTCTTCTGTTGGCCTCGC+TGG | 0.403590 | 1_3:-58817386 | Msa0128970:CDS |
| ACAGTGCATACGCTCTGAAA+TGG | 0.408844 | 1_3:-58817481 | Msa0128970:CDS |
| TCTGTTGGCCTCGCTGGTCC+TGG | 0.423133 | 1_3:-58817380 | Msa0128970:intron |
| GATTATATATTTATTCTTGT+AGG | 0.425496 | 1_3:+58815707 | None:intergenic |
| ACGGTTATGGGGCTATAAAA+AGG | 0.451906 | 1_3:-58816305 | Msa0128970:intron |
| TTGTGACTTAGTTTATCCTA+TGG | 0.465564 | 1_3:-58815646 | Msa0128970:three_prime_UTR |
| ACAAAGTAAAATAAGGCCTC+CGG | 0.473405 | 1_3:+58815560 | None:intergenic |
| CCCGCCGCTACTTCTTCTGT+TGG | 0.478264 | 1_3:-58817395 | Msa0128970:CDS |
| ATACTTTATGAAAATGGCAA+TGG | 0.499210 | 1_3:-58815466 | Msa0128970:three_prime_UTR |
| GCTATTTCACTTTAGCTGAA+AGG | 0.508675 | 1_3:+58815685 | None:intergenic |
| TCAGGTAAATGATGTAATAG+TGG | 0.511125 | 1_3:-58816409 | Msa0128970:intron |
| ATCTTGGTTGTAGGTAGTCA+CGG | 0.516671 | 1_3:-58816324 | Msa0128970:CDS |
| TGCCAATATAGATCAGTGCT+TGG | 0.536544 | 1_3:+58815733 | None:intergenic |
| CAAAGTAAAATAAGGCCTCC+GGG | 0.542553 | 1_3:+58815561 | None:intergenic |
| TGATGTAATAGTGGAGGTGG+TGG | 0.556420 | 1_3:-58816400 | Msa0128970:CDS |
| AAATAAGGCCTCCGGGTAGG+AGG | 0.557118 | 1_3:+58815568 | None:intergenic |
| AAATGATGTAATAGTGGAGG+TGG | 0.562868 | 1_3:-58816403 | Msa0128970:CDS |
| GATTGTTGTTGCCTCCTACC+CGG | 0.564104 | 1_3:-58815579 | Msa0128970:three_prime_UTR |
| GTAAAATAAGGCCTCCGGGT+AGG | 0.586447 | 1_3:+58815565 | None:intergenic |
| CTACAAACCAAACATGCCAT+AGG | 0.591562 | 1_3:+58815630 | None:intergenic |
| AGTGTACGCAGGAGCTGCTG+AGG | 0.594737 | 1_3:-58817274 | Msa0128970:CDS |
| TGTAGGTAGTCACGGTTATG+GGG | 0.599167 | 1_3:-58816316 | Msa0128970:CDS |
| ATAGAAAATATGCAATTGTG+TGG | 0.605193 | 1_3:-58815601 | Msa0128970:three_prime_UTR |
| TTGTGCTAATTAGTGTACGC+AGG | 0.608881 | 1_3:-58817285 | Msa0128970:intron |
| GCCAACAGAAGAAGTAGCGG+CGG | 0.613641 | 1_3:+58817394 | None:intergenic |
| GAGGCCAACAGAAGAAGTAG+CGG | 0.621681 | 1_3:+58817391 | None:intergenic |
| CCAACAGAAGAAGTAGCGGC+GGG | 0.624059 | 1_3:+58817395 | None:intergenic |
| GTAATAGTGGAGGTGGTGGA+AGG | 0.626493 | 1_3:-58816396 | Msa0128970:CDS |
| GGTAAATGATGTAATAGTGG+AGG | 0.637317 | 1_3:-58816406 | Msa0128970:CDS |
| TGTTGTTGCCTCCTACCCGG+AGG | 0.694844 | 1_3:-58815576 | Msa0128970:three_prime_UTR |
| GAATTATACCAGGACCAGCG+AGG | 0.726201 | 1_3:+58817372 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTATGAAAAGAATTA+GGG | + | chr1_3:58816061-58816080 | None:intergenic | 10.0% |
| !! | ATAAAATTATGAAAAGAATT+AGG | + | chr1_3:58816062-58816081 | None:intergenic | 10.0% |
| !!! | TTTCATAATTTTATTTGATA+AGG | - | chr1_3:58816068-58816087 | Msa0128970:intron | 10.0% |
| !!! | ATGATATTATTTTAGATAAT+AGG | - | chr1_3:58816194-58816213 | Msa0128970:intron | 10.0% |
| !! | TAAAATTATGAAAAGAATTA+GGG | + | chr1_3:58816061-58816080 | None:intergenic | 10.0% |
| !! | ATAAAATTATGAAAAGAATT+AGG | + | chr1_3:58816062-58816081 | None:intergenic | 10.0% |
| !!! | TTTCATAATTTTATTTGATA+AGG | - | chr1_3:58816068-58816087 | Msa0128970:intron | 10.0% |
| !!! | ATGATATTATTTTAGATAAT+AGG | - | chr1_3:58816194-58816213 | Msa0128970:intron | 10.0% |
| !!! | ATTTTATTTGATAAGGAAAA+TGG | - | chr1_3:58816075-58816094 | Msa0128970:intron | 15.0% |
| !! | AAAAATGTTAGAATTAAATG+CGG | + | chr1_3:58816880-58816899 | None:intergenic | 15.0% |
| !!! | ATTACATTTATTCATGTTTT+TGG | + | chr1_3:58816947-58816966 | None:intergenic | 15.0% |
| !!! | ACTTTTCATTTTATTTATAC+TGG | - | chr1_3:58817119-58817138 | Msa0128970:intron | 15.0% |
| !!! | CTTTTCATTTTATTTATACT+GGG | - | chr1_3:58817120-58817139 | Msa0128970:intron | 15.0% |
| !!! | TTTTCATTTTATTTATACTG+GGG | - | chr1_3:58817121-58817140 | Msa0128970:intron | 15.0% |
| !! | GATTATATATTTATTCTTGT+AGG | + | chr1_3:58817340-58817359 | None:intergenic | 15.0% |
| !! | TTGAAAAATAATCATTGTTA+AGG | - | chr1_3:58817621-58817640 | Msa0128970:five_prime_UTR | 15.0% |
| !!! | ATTTTATTTGATAAGGAAAA+TGG | - | chr1_3:58816075-58816094 | Msa0128970:intron | 15.0% |
| !! | AAAAATGTTAGAATTAAATG+CGG | + | chr1_3:58816880-58816899 | None:intergenic | 15.0% |
| !!! | ATTACATTTATTCATGTTTT+TGG | + | chr1_3:58816947-58816966 | None:intergenic | 15.0% |
| !!! | ACTTTTCATTTTATTTATAC+TGG | - | chr1_3:58817119-58817138 | Msa0128970:intron | 15.0% |
| !!! | CTTTTCATTTTATTTATACT+GGG | - | chr1_3:58817120-58817139 | Msa0128970:intron | 15.0% |
| !!! | TTTTCATTTTATTTATACTG+GGG | - | chr1_3:58817121-58817140 | Msa0128970:intron | 15.0% |
| !! | GATTATATATTTATTCTTGT+AGG | + | chr1_3:58817340-58817359 | None:intergenic | 15.0% |
| !!! | TTTGTTGATGTTTTGATAAT+TGG | - | chr1_3:58815727-58815746 | Msa0128970:CDS | 20.0% |
| !! | AACAAAAATAGAAACACATA+CGG | + | chr1_3:58815877-58815896 | None:intergenic | 20.0% |
| !!! | TAAATTTTAAACAACAGTCA+AGG | - | chr1_3:58815912-58815931 | Msa0128970:intron | 20.0% |
| !!! | TTTTTTGTTAGTTTGATGAA+AGG | - | chr1_3:58816306-58816325 | Msa0128970:CDS | 20.0% |
| !!! | TAATGTATACATTTTTCCTT+AGG | + | chr1_3:58816560-58816579 | None:intergenic | 20.0% |
| !! | ACATAATTATAAAGTCTCTA+TGG | - | chr1_3:58817041-58817060 | Msa0128970:intron | 20.0% |
| !! | AAATAAACTTAGAAAGCAAA+AGG | + | chr1_3:58817098-58817117 | None:intergenic | 20.0% |
| !!! | TTTCATTTTATTTATACTGG+GGG | - | chr1_3:58817122-58817141 | Msa0128970:intron | 20.0% |
| !! | TTCATGTACAAAGTAAAATA+AGG | + | chr1_3:58817494-58817513 | None:intergenic | 20.0% |
| !!! | TTTGTTGATGTTTTGATAAT+TGG | - | chr1_3:58815727-58815746 | Msa0128970:CDS | 20.0% |
| !! | AACAAAAATAGAAACACATA+CGG | + | chr1_3:58815877-58815896 | None:intergenic | 20.0% |
| !!! | TAAATTTTAAACAACAGTCA+AGG | - | chr1_3:58815912-58815931 | Msa0128970:intron | 20.0% |
| !!! | TTTTTTGTTAGTTTGATGAA+AGG | - | chr1_3:58816306-58816325 | Msa0128970:CDS | 20.0% |
| !!! | TAATGTATACATTTTTCCTT+AGG | + | chr1_3:58816560-58816579 | None:intergenic | 20.0% |
| !! | ACATAATTATAAAGTCTCTA+TGG | - | chr1_3:58817041-58817060 | Msa0128970:intron | 20.0% |
| !! | AAATAAACTTAGAAAGCAAA+AGG | + | chr1_3:58817098-58817117 | None:intergenic | 20.0% |
| !!! | TTTCATTTTATTTATACTGG+GGG | - | chr1_3:58817122-58817141 | Msa0128970:intron | 20.0% |
| !! | TTCATGTACAAAGTAAAATA+AGG | + | chr1_3:58817494-58817513 | None:intergenic | 20.0% |
| ! | ATGAAATTGAGAATTATACC+AGG | + | chr1_3:58815685-58815704 | None:intergenic | 25.0% |
| !! | TGAAATTTCTCTGGTTTATA+CGG | - | chr1_3:58816110-58816129 | Msa0128970:intron | 25.0% |
| ! | TTACCATCATCTTTGTATTT+CGG | - | chr1_3:58816419-58816438 | Msa0128970:intron | 25.0% |
| !!! | TTAATACACACAAGTTTTGT+TGG | + | chr1_3:58816505-58816524 | None:intergenic | 25.0% |
| ! | TTAAGTACTTATGTCATATG+TGG | - | chr1_3:58816586-58816605 | Msa0128970:intron | 25.0% |
| ! | ATAGAAAATATGCAATTGTG+TGG | - | chr1_3:58817443-58817462 | Msa0128970:CDS | 25.0% |
| !! | GCAAAAAACAGTAATTTTTC+AGG | + | chr1_3:58817554-58817573 | None:intergenic | 25.0% |
| ! | ATACTTTATGAAAATGGCAA+TGG | - | chr1_3:58817578-58817597 | Msa0128970:exon | 25.0% |
| ! | ATGAAATTGAGAATTATACC+AGG | + | chr1_3:58815685-58815704 | None:intergenic | 25.0% |
| !! | TGAAATTTCTCTGGTTTATA+CGG | - | chr1_3:58816110-58816129 | Msa0128970:intron | 25.0% |
| ! | TTACCATCATCTTTGTATTT+CGG | - | chr1_3:58816419-58816438 | Msa0128970:intron | 25.0% |
| !!! | TTAATACACACAAGTTTTGT+TGG | + | chr1_3:58816505-58816524 | None:intergenic | 25.0% |
| ! | TTAAGTACTTATGTCATATG+TGG | - | chr1_3:58816586-58816605 | Msa0128970:intron | 25.0% |
| ! | ATAGAAAATATGCAATTGTG+TGG | - | chr1_3:58817443-58817462 | Msa0128970:CDS | 25.0% |
| !! | GCAAAAAACAGTAATTTTTC+AGG | + | chr1_3:58817554-58817573 | None:intergenic | 25.0% |
| ! | ATACTTTATGAAAATGGCAA+TGG | - | chr1_3:58817578-58817597 | Msa0128970:exon | 25.0% |
| !! | TCCGTTAGTGATTTTTAGAA+TGG | - | chr1_3:58815468-58815487 | Msa0128970:three_prime_UTR | 30.0% |
| ! | GCCATTCTAAAAATCACTAA+CGG | + | chr1_3:58815472-58815491 | None:intergenic | 30.0% |
| ATTTCGGTTGACAAATGTTA+TGG | - | chr1_3:58815939-58815958 | Msa0128970:intron | 30.0% | |
| ! | TAAGGAAAATGGCTTTTGAA+TGG | - | chr1_3:58816086-58816105 | Msa0128970:intron | 30.0% |
| TTGAATGGATGAAATTTCTC+TGG | - | chr1_3:58816101-58816120 | Msa0128970:intron | 30.0% | |
| TCCTGTATTTATATGTTGTG+TGG | - | chr1_3:58816133-58816152 | Msa0128970:intron | 30.0% | |
| CCTGTATTTATATGTTGTGT+GGG | - | chr1_3:58816134-58816153 | Msa0128970:intron | 30.0% | |
| GATGAAAGGAGATAAATTGA+AGG | - | chr1_3:58816320-58816339 | Msa0128970:CDS | 30.0% | |
| TTCACTTAAATTGCTTCAAC+TGG | - | chr1_3:58816385-58816404 | Msa0128970:CDS | 30.0% | |
| TAACCGAAATACAAAGATGA+TGG | + | chr1_3:58816425-58816444 | None:intergenic | 30.0% | |
| !! | TTTTGTTGGCCTAACTAATA+GGG | + | chr1_3:58816491-58816510 | None:intergenic | 30.0% |
| ! | TCTGATAACTGAATTTTCTC+AGG | - | chr1_3:58816617-58816636 | Msa0128970:intron | 30.0% |
| TCAGGTAAATGATGTAATAG+TGG | - | chr1_3:58816635-58816654 | Msa0128970:intron | 30.0% | |
| TACAATTATCATCCTTCGTT+TGG | - | chr1_3:58816779-58816798 | Msa0128970:intron | 30.0% | |
| !!! | CTTTTCTGAAACTTGTGAAT+AGG | - | chr1_3:58816838-58816857 | Msa0128970:intron | 30.0% |
| AATTAAATGCGGCATATTCA+TGG | + | chr1_3:58816869-58816888 | None:intergenic | 30.0% | |
| AAACTTAGAAAGCAAAAGGA+AGG | + | chr1_3:58817094-58817113 | None:intergenic | 30.0% | |
| TTGTGACTTAGTTTATCCTA+TGG | - | chr1_3:58817398-58817417 | Msa0128970:CDS | 30.0% | |
| GCCTTGATACTTTATGAAAA+TGG | - | chr1_3:58817572-58817591 | Msa0128970:exon | 30.0% | |
| !! | GCCATTTTCATAAAGTATCA+AGG | + | chr1_3:58817576-58817595 | None:intergenic | 30.0% |
| !! | TCCGTTAGTGATTTTTAGAA+TGG | - | chr1_3:58815468-58815487 | Msa0128970:three_prime_UTR | 30.0% |
| ! | GCCATTCTAAAAATCACTAA+CGG | + | chr1_3:58815472-58815491 | None:intergenic | 30.0% |
| ATTTCGGTTGACAAATGTTA+TGG | - | chr1_3:58815939-58815958 | Msa0128970:intron | 30.0% | |
| ! | TAAGGAAAATGGCTTTTGAA+TGG | - | chr1_3:58816086-58816105 | Msa0128970:intron | 30.0% |
| TTGAATGGATGAAATTTCTC+TGG | - | chr1_3:58816101-58816120 | Msa0128970:intron | 30.0% | |
| TCCTGTATTTATATGTTGTG+TGG | - | chr1_3:58816133-58816152 | Msa0128970:intron | 30.0% | |
| CCTGTATTTATATGTTGTGT+GGG | - | chr1_3:58816134-58816153 | Msa0128970:intron | 30.0% | |
| GATGAAAGGAGATAAATTGA+AGG | - | chr1_3:58816320-58816339 | Msa0128970:CDS | 30.0% | |
| TTCACTTAAATTGCTTCAAC+TGG | - | chr1_3:58816385-58816404 | Msa0128970:CDS | 30.0% | |
| TAACCGAAATACAAAGATGA+TGG | + | chr1_3:58816425-58816444 | None:intergenic | 30.0% | |
| !! | TTTTGTTGGCCTAACTAATA+GGG | + | chr1_3:58816491-58816510 | None:intergenic | 30.0% |
| ! | TCTGATAACTGAATTTTCTC+AGG | - | chr1_3:58816617-58816636 | Msa0128970:intron | 30.0% |
| TCAGGTAAATGATGTAATAG+TGG | - | chr1_3:58816635-58816654 | Msa0128970:intron | 30.0% | |
| TACAATTATCATCCTTCGTT+TGG | - | chr1_3:58816779-58816798 | Msa0128970:intron | 30.0% | |
| !!! | CTTTTCTGAAACTTGTGAAT+AGG | - | chr1_3:58816838-58816857 | Msa0128970:intron | 30.0% |
| AATTAAATGCGGCATATTCA+TGG | + | chr1_3:58816869-58816888 | None:intergenic | 30.0% | |
| AAACTTAGAAAGCAAAAGGA+AGG | + | chr1_3:58817094-58817113 | None:intergenic | 30.0% | |
| TTGTGACTTAGTTTATCCTA+TGG | - | chr1_3:58817398-58817417 | Msa0128970:CDS | 30.0% | |
| GCCTTGATACTTTATGAAAA+TGG | - | chr1_3:58817572-58817591 | Msa0128970:exon | 30.0% | |
| !! | GCCATTTTCATAAAGTATCA+AGG | + | chr1_3:58817576-58817595 | None:intergenic | 30.0% |
| TCGATTGCAACTAACATTAC+TGG | + | chr1_3:58815532-58815551 | None:intergenic | 35.0% | |
| CTCAAATCAGAATCCACAAT+TGG | + | chr1_3:58815801-58815820 | None:intergenic | 35.0% | |
| CCCACACAACATATAAATAC+AGG | + | chr1_3:58816137-58816156 | None:intergenic | 35.0% | |
| TTTATATGTTGTGTGGGACT+TGG | - | chr1_3:58816140-58816159 | Msa0128970:intron | 35.0% | |
| ! | TCGGTTAATTGTCATGCTTT+TGG | - | chr1_3:58816438-58816457 | Msa0128970:intron | 35.0% |
| AACTAATAGGGATATGGGTA+TGG | + | chr1_3:58816479-58816498 | None:intergenic | 35.0% | |
| TACCCATATCCCTATTAGTT+AGG | - | chr1_3:58816479-58816498 | Msa0128970:intron | 35.0% | |
| !! | GTTTTGTTGGCCTAACTAAT+AGG | + | chr1_3:58816492-58816511 | None:intergenic | 35.0% |
| ! | TTTTTCTACTTTCGAGCCTA+AGG | - | chr1_3:58816541-58816560 | Msa0128970:intron | 35.0% |
| GGTAAATGATGTAATAGTGG+AGG | - | chr1_3:58816638-58816657 | Msa0128970:intron | 35.0% | |
| ! | AAATGATGTAATAGTGGAGG+TGG | - | chr1_3:58816641-58816660 | Msa0128970:intron | 35.0% |
| !! | AAAGTATCGTGCTTCAATCT+TGG | - | chr1_3:58816704-58816723 | Msa0128970:intron | 35.0% |
| TATGGGGCTATAAAAAGGTA+TGG | - | chr1_3:58816744-58816763 | Msa0128970:intron | 35.0% | |
| ! | AAAAAGGTATGGCTTCATTG+TGG | - | chr1_3:58816755-58816774 | Msa0128970:intron | 35.0% |
| TTACATATCACTCCAAACGA+AGG | + | chr1_3:58816794-58816813 | None:intergenic | 35.0% | |
| TAATCTTGTGTTTGTGATCG+TGG | + | chr1_3:58816919-58816938 | None:intergenic | 35.0% | |
| AGGTTAAAGATTTCAGTGGA+TGG | + | chr1_3:58816973-58816992 | None:intergenic | 35.0% | |
| ATCTTTAACCTGCAGAAGAT+AGG | - | chr1_3:58816982-58817001 | Msa0128970:intron | 35.0% | |
| CAAAAGGAAGGTTTGATTGT+TGG | + | chr1_3:58817082-58817101 | None:intergenic | 35.0% | |
| ! | TATAGATCAGTGCTTGGTTT+TGG | + | chr1_3:58817308-58817327 | None:intergenic | 35.0% |
| !! | AACCAAGCACTGATCTATAT+TGG | - | chr1_3:58817309-58817328 | Msa0128970:intron | 35.0% |
| ! | GCTATTTCACTTTAGCTGAA+AGG | + | chr1_3:58817362-58817381 | None:intergenic | 35.0% |
| AGTTTATCCTATGGCATGTT+TGG | - | chr1_3:58817407-58817426 | Msa0128970:CDS | 35.0% | |
| ACAAAGTAAAATAAGGCCTC+CGG | + | chr1_3:58817487-58817506 | None:intergenic | 35.0% | |
| TCGATTGCAACTAACATTAC+TGG | + | chr1_3:58815532-58815551 | None:intergenic | 35.0% | |
| CTCAAATCAGAATCCACAAT+TGG | + | chr1_3:58815801-58815820 | None:intergenic | 35.0% | |
| CCCACACAACATATAAATAC+AGG | + | chr1_3:58816137-58816156 | None:intergenic | 35.0% | |
| TTTATATGTTGTGTGGGACT+TGG | - | chr1_3:58816140-58816159 | Msa0128970:intron | 35.0% | |
| ! | TCGGTTAATTGTCATGCTTT+TGG | - | chr1_3:58816438-58816457 | Msa0128970:intron | 35.0% |
| AACTAATAGGGATATGGGTA+TGG | + | chr1_3:58816479-58816498 | None:intergenic | 35.0% | |
| TACCCATATCCCTATTAGTT+AGG | - | chr1_3:58816479-58816498 | Msa0128970:intron | 35.0% | |
| !! | GTTTTGTTGGCCTAACTAAT+AGG | + | chr1_3:58816492-58816511 | None:intergenic | 35.0% |
| ! | TTTTTCTACTTTCGAGCCTA+AGG | - | chr1_3:58816541-58816560 | Msa0128970:intron | 35.0% |
| GGTAAATGATGTAATAGTGG+AGG | - | chr1_3:58816638-58816657 | Msa0128970:intron | 35.0% | |
| ! | AAATGATGTAATAGTGGAGG+TGG | - | chr1_3:58816641-58816660 | Msa0128970:intron | 35.0% |
| !! | AAAGTATCGTGCTTCAATCT+TGG | - | chr1_3:58816704-58816723 | Msa0128970:intron | 35.0% |
| TATGGGGCTATAAAAAGGTA+TGG | - | chr1_3:58816744-58816763 | Msa0128970:intron | 35.0% | |
| ! | AAAAAGGTATGGCTTCATTG+TGG | - | chr1_3:58816755-58816774 | Msa0128970:intron | 35.0% |
| TTACATATCACTCCAAACGA+AGG | + | chr1_3:58816794-58816813 | None:intergenic | 35.0% | |
| TAATCTTGTGTTTGTGATCG+TGG | + | chr1_3:58816919-58816938 | None:intergenic | 35.0% | |
| AGGTTAAAGATTTCAGTGGA+TGG | + | chr1_3:58816973-58816992 | None:intergenic | 35.0% | |
| ATCTTTAACCTGCAGAAGAT+AGG | - | chr1_3:58816982-58817001 | Msa0128970:intron | 35.0% | |
| CAAAAGGAAGGTTTGATTGT+TGG | + | chr1_3:58817082-58817101 | None:intergenic | 35.0% | |
| ! | TATAGATCAGTGCTTGGTTT+TGG | + | chr1_3:58817308-58817327 | None:intergenic | 35.0% |
| !! | AACCAAGCACTGATCTATAT+TGG | - | chr1_3:58817309-58817328 | Msa0128970:intron | 35.0% |
| ! | GCTATTTCACTTTAGCTGAA+AGG | + | chr1_3:58817362-58817381 | None:intergenic | 35.0% |
| AGTTTATCCTATGGCATGTT+TGG | - | chr1_3:58817407-58817426 | Msa0128970:CDS | 35.0% | |
| ACAAAGTAAAATAAGGCCTC+CGG | + | chr1_3:58817487-58817506 | None:intergenic | 35.0% | |
| TTGTGCTAATTAGTGTACGC+AGG | - | chr1_3:58815759-58815778 | Msa0128970:CDS | 40.0% | |
| CAACAGTCAAGGTGTGATTT+CGG | - | chr1_3:58815923-58815942 | Msa0128970:intron | 40.0% | |
| GGCCTAACTAATAGGGATAT+GGG | + | chr1_3:58816484-58816503 | None:intergenic | 40.0% | |
| TGGCCTAACTAATAGGGATA+TGG | + | chr1_3:58816485-58816504 | None:intergenic | 40.0% | |
| ATCTTGGTTGTAGGTAGTCA+CGG | - | chr1_3:58816720-58816739 | Msa0128970:intron | 40.0% | |
| TTGTAGGTAGTCACGGTTAT+GGG | - | chr1_3:58816727-58816746 | Msa0128970:intron | 40.0% | |
| ACGGTTATGGGGCTATAAAA+AGG | - | chr1_3:58816739-58816758 | Msa0128970:intron | 40.0% | |
| CTGCAGGTTAAAGATTTCAG+TGG | + | chr1_3:58816977-58816996 | None:intergenic | 40.0% | |
| TCGAGTGTAGTGAGTGAATT+AGG | + | chr1_3:58817199-58817218 | None:intergenic | 40.0% | |
| ! | ACTCGACTCTTTTAATCTGC+AGG | - | chr1_3:58817213-58817232 | Msa0128970:CDS | 40.0% |
| ! | CTCGACTCTTTTAATCTGCA+GGG | - | chr1_3:58817214-58817233 | Msa0128970:CDS | 40.0% |
| TGCCAATATAGATCAGTGCT+TGG | + | chr1_3:58817314-58817333 | None:intergenic | 40.0% | |
| CTACAAACCAAACATGCCAT+AGG | + | chr1_3:58817417-58817436 | None:intergenic | 40.0% | |
| CAAAGTAAAATAAGGCCTCC+GGG | + | chr1_3:58817486-58817505 | None:intergenic | 40.0% | |
| TTGTGCTAATTAGTGTACGC+AGG | - | chr1_3:58815759-58815778 | Msa0128970:CDS | 40.0% | |
| CAACAGTCAAGGTGTGATTT+CGG | - | chr1_3:58815923-58815942 | Msa0128970:intron | 40.0% | |
| GGCCTAACTAATAGGGATAT+GGG | + | chr1_3:58816484-58816503 | None:intergenic | 40.0% | |
| TGGCCTAACTAATAGGGATA+TGG | + | chr1_3:58816485-58816504 | None:intergenic | 40.0% | |
| ATCTTGGTTGTAGGTAGTCA+CGG | - | chr1_3:58816720-58816739 | Msa0128970:intron | 40.0% | |
| TTGTAGGTAGTCACGGTTAT+GGG | - | chr1_3:58816727-58816746 | Msa0128970:intron | 40.0% | |
| ACGGTTATGGGGCTATAAAA+AGG | - | chr1_3:58816739-58816758 | Msa0128970:intron | 40.0% | |
| CTGCAGGTTAAAGATTTCAG+TGG | + | chr1_3:58816977-58816996 | None:intergenic | 40.0% | |
| TCGAGTGTAGTGAGTGAATT+AGG | + | chr1_3:58817199-58817218 | None:intergenic | 40.0% | |
| ! | ACTCGACTCTTTTAATCTGC+AGG | - | chr1_3:58817213-58817232 | Msa0128970:CDS | 40.0% |
| ! | CTCGACTCTTTTAATCTGCA+GGG | - | chr1_3:58817214-58817233 | Msa0128970:CDS | 40.0% |
| TGCCAATATAGATCAGTGCT+TGG | + | chr1_3:58817314-58817333 | None:intergenic | 40.0% | |
| CTACAAACCAAACATGCCAT+AGG | + | chr1_3:58817417-58817436 | None:intergenic | 40.0% | |
| CAAAGTAAAATAAGGCCTCC+GGG | + | chr1_3:58817486-58817505 | None:intergenic | 40.0% | |
| !! | ACAGTGCATACGCTCTGAAA+TGG | - | chr1_3:58815563-58815582 | Msa0128970:three_prime_UTR | 45.0% |
| ! | TGCTGAGGTTTTGCCAATTG+TGG | - | chr1_3:58815785-58815804 | Msa0128970:CDS | 45.0% |
| GGGACTTGGAGCATACTATA+TGG | - | chr1_3:58816154-58816173 | Msa0128970:intron | 45.0% | |
| TAGCTGAATGCATCATGCTC+AGG | - | chr1_3:58816231-58816250 | Msa0128970:intron | 45.0% | |
| ! | TGATGTAATAGTGGAGGTGG+TGG | - | chr1_3:58816644-58816663 | Msa0128970:intron | 45.0% |
| CGTGCTTCAATCTTGGTTGT+AGG | - | chr1_3:58816711-58816730 | Msa0128970:intron | 45.0% | |
| GTTGTAGGTAGTCACGGTTA+TGG | - | chr1_3:58816726-58816745 | Msa0128970:intron | 45.0% | |
| TGTAGGTAGTCACGGTTATG+GGG | - | chr1_3:58816728-58816747 | Msa0128970:intron | 45.0% | |
| TCTTGTGTTTGTGATCGTGG+TGG | + | chr1_3:58816916-58816935 | None:intergenic | 45.0% | |
| ! | GACTCTTTTAATCTGCAGGG+CGG | - | chr1_3:58817217-58817236 | Msa0128970:CDS | 45.0% |
| ! | TTAATCTGCAGGGCGGTTTT+AGG | - | chr1_3:58817224-58817243 | Msa0128970:CDS | 45.0% |
| !! | ACAGTGCATACGCTCTGAAA+TGG | - | chr1_3:58815563-58815582 | Msa0128970:three_prime_UTR | 45.0% |
| ! | TGCTGAGGTTTTGCCAATTG+TGG | - | chr1_3:58815785-58815804 | Msa0128970:CDS | 45.0% |
| GGGACTTGGAGCATACTATA+TGG | - | chr1_3:58816154-58816173 | Msa0128970:intron | 45.0% | |
| TAGCTGAATGCATCATGCTC+AGG | - | chr1_3:58816231-58816250 | Msa0128970:intron | 45.0% | |
| ! | TGATGTAATAGTGGAGGTGG+TGG | - | chr1_3:58816644-58816663 | Msa0128970:intron | 45.0% |
| CGTGCTTCAATCTTGGTTGT+AGG | - | chr1_3:58816711-58816730 | Msa0128970:intron | 45.0% | |
| GTTGTAGGTAGTCACGGTTA+TGG | - | chr1_3:58816726-58816745 | Msa0128970:intron | 45.0% | |
| TGTAGGTAGTCACGGTTATG+GGG | - | chr1_3:58816728-58816747 | Msa0128970:intron | 45.0% | |
| TCTTGTGTTTGTGATCGTGG+TGG | + | chr1_3:58816916-58816935 | None:intergenic | 45.0% | |
| ! | GACTCTTTTAATCTGCAGGG+CGG | - | chr1_3:58817217-58817236 | Msa0128970:CDS | 45.0% |
| ! | TTAATCTGCAGGGCGGTTTT+AGG | - | chr1_3:58817224-58817243 | Msa0128970:CDS | 45.0% |
| GAGGCCAACAGAAGAAGTAG+CGG | + | chr1_3:58815656-58815675 | None:intergenic | 50.0% | |
| GAATTATACCAGGACCAGCG+AGG | + | chr1_3:58815675-58815694 | None:intergenic | 50.0% | |
| !! | GTAATAGTGGAGGTGGTGGA+AGG | - | chr1_3:58816648-58816667 | Msa0128970:intron | 50.0% |
| TACTGCTGCCTATCTTCTGC+AGG | + | chr1_3:58816993-58817012 | None:intergenic | 50.0% | |
| ! | GATTGTTGTTGCCTCCTACC+CGG | - | chr1_3:58817465-58817484 | Msa0128970:CDS | 50.0% |
| GTAAAATAAGGCCTCCGGGT+AGG | + | chr1_3:58817482-58817501 | None:intergenic | 50.0% | |
| GAGGCCAACAGAAGAAGTAG+CGG | + | chr1_3:58815656-58815675 | None:intergenic | 50.0% | |
| GAATTATACCAGGACCAGCG+AGG | + | chr1_3:58815675-58815694 | None:intergenic | 50.0% | |
| !! | GTAATAGTGGAGGTGGTGGA+AGG | - | chr1_3:58816648-58816667 | Msa0128970:intron | 50.0% |
| TACTGCTGCCTATCTTCTGC+AGG | + | chr1_3:58816993-58817012 | None:intergenic | 50.0% | |
| ! | GATTGTTGTTGCCTCCTACC+CGG | - | chr1_3:58817465-58817484 | Msa0128970:CDS | 50.0% |
| GTAAAATAAGGCCTCCGGGT+AGG | + | chr1_3:58817482-58817501 | None:intergenic | 50.0% | |
| CCAACAGAAGAAGTAGCGGC+GGG | + | chr1_3:58815652-58815671 | None:intergenic | 55.0% | |
| GCCAACAGAAGAAGTAGCGG+CGG | + | chr1_3:58815653-58815672 | None:intergenic | 55.0% | |
| ! | ACTTCTTCTGTTGGCCTCGC+TGG | - | chr1_3:58815658-58815677 | Msa0128970:three_prime_UTR | 55.0% |
| AAATAAGGCCTCCGGGTAGG+AGG | + | chr1_3:58817479-58817498 | None:intergenic | 55.0% | |
| CCAACAGAAGAAGTAGCGGC+GGG | + | chr1_3:58815652-58815671 | None:intergenic | 55.0% | |
| GCCAACAGAAGAAGTAGCGG+CGG | + | chr1_3:58815653-58815672 | None:intergenic | 55.0% | |
| ! | ACTTCTTCTGTTGGCCTCGC+TGG | - | chr1_3:58815658-58815677 | Msa0128970:three_prime_UTR | 55.0% |
| AAATAAGGCCTCCGGGTAGG+AGG | + | chr1_3:58817479-58817498 | None:intergenic | 55.0% | |
| CCCGCCGCTACTTCTTCTGT+TGG | - | chr1_3:58815649-58815668 | Msa0128970:three_prime_UTR | 60.0% | |
| AGTGTACGCAGGAGCTGCTG+AGG | - | chr1_3:58815770-58815789 | Msa0128970:CDS | 60.0% | |
| TGTTGTTGCCTCCTACCCGG+AGG | - | chr1_3:58817468-58817487 | Msa0128970:CDS | 60.0% | |
| CCCGCCGCTACTTCTTCTGT+TGG | - | chr1_3:58815649-58815668 | Msa0128970:three_prime_UTR | 60.0% | |
| AGTGTACGCAGGAGCTGCTG+AGG | - | chr1_3:58815770-58815789 | Msa0128970:CDS | 60.0% | |
| TGTTGTTGCCTCCTACCCGG+AGG | - | chr1_3:58817468-58817487 | Msa0128970:CDS | 60.0% | |
| ! | TCTGTTGGCCTCGCTGGTCC+TGG | - | chr1_3:58815664-58815683 | Msa0128970:three_prime_UTR | 65.0% |
| ! | TCTGTTGGCCTCGCTGGTCC+TGG | - | chr1_3:58815664-58815683 | Msa0128970:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 58815425 | 58817641 | 58815425 | ID=Msa0128970;Name=Msa0128970 |
| chr1_3 | mRNA | 58815425 | 58817641 | 58815425 | ID=Msa0128970-mRNA-1;Parent=Msa0128970;Name=Msa0128970-mRNA-1;_AED=0.04;_eAED=0.04;_QI=62|1|1|1|0.66|0.75|4|292|179 |
| chr1_3 | exon | 58815425 | 58815831 | 58815425 | ID=Msa0128970-mRNA-1:exon:19041;Parent=Msa0128970-mRNA-1 |
| chr1_3 | exon | 58816306 | 58816427 | 58816306 | ID=Msa0128970-mRNA-1:exon:19040;Parent=Msa0128970-mRNA-1 |
| chr1_3 | exon | 58817191 | 58817294 | 58817191 | ID=Msa0128970-mRNA-1:exon:19039;Parent=Msa0128970-mRNA-1 |
| chr1_3 | exon | 58817381 | 58817641 | 58817381 | ID=Msa0128970-mRNA-1:exon:19038;Parent=Msa0128970-mRNA-1 |
| chr1_3 | five_prime_UTR | 58817580 | 58817641 | 58817580 | ID=Msa0128970-mRNA-1:five_prime_utr;Parent=Msa0128970-mRNA-1 |
| chr1_3 | CDS | 58817381 | 58817579 | 58817381 | ID=Msa0128970-mRNA-1:cds;Parent=Msa0128970-mRNA-1 |
| chr1_3 | CDS | 58817191 | 58817294 | 58817191 | ID=Msa0128970-mRNA-1:cds;Parent=Msa0128970-mRNA-1 |
| chr1_3 | CDS | 58816306 | 58816427 | 58816306 | ID=Msa0128970-mRNA-1:cds;Parent=Msa0128970-mRNA-1 |
| chr1_3 | CDS | 58815717 | 58815831 | 58815717 | ID=Msa0128970-mRNA-1:cds;Parent=Msa0128970-mRNA-1 |
| chr1_3 | three_prime_UTR | 58815425 | 58815716 | 58815425 | ID=Msa0128970-mRNA-1:three_prime_utr;Parent=Msa0128970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
