Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082410 | sp|Q8LGG8|USPAL_ARATH | 29.078 | 141 | 85 | 3 | 30 | 162 | 30 | 163 | 2.50e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082410 | G7IF73 | 95.732 | 164 | 4 | 1 | 1 | 164 | 1 | 161 | 3.78e-108 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0082240 | Msa0082410 | 0.965771 | 4.875073e-125 | -8.615850e-47 |
| Msa0082410 | Msa0128810 | 0.834093 | 3.658787e-56 | -8.615850e-47 |
| Msa0082410 | Msa0128970 | 0.889385 | 2.539094e-73 | -8.615850e-47 |
| Msa0082410 | Msa0174810 | 0.934183 | 5.988946e-96 | -8.615850e-47 |
| Msa0082410 | Msa0434140 | 0.823521 | 1.324293e-53 | -8.615850e-47 |
| Msa0082410 | Msa0477660 | 0.805514 | 1.286607e-49 | -8.615850e-47 |
| Msa0082410 | Msa0511380 | 0.822476 | 2.321053e-53 | -8.615850e-47 |
| Msa0082410 | Msa0521720 | 0.810475 | 1.131836e-50 | -8.615850e-47 |
| Msa0082410 | Msa1026970 | 0.816206 | 6.232468e-52 | -8.615850e-47 |
| Msa0082410 | Msa1154310 | 0.821849 | 3.244539e-53 | -8.615850e-47 |
| Msa0082410 | Msa1370820 | 0.918840 | 9.481630e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082410 | MtrunA17_Chr1g0195661 | 94.012 | 167 | 4 | 2 | 1 | 164 | 1 | 164 | 1.19e-109 | 310 |
| Msa0082410 | MtrunA17_Chr7g0269301 | 69.079 | 152 | 45 | 2 | 16 | 165 | 9 | 160 | 4.55e-65 | 196 |
| Msa0082410 | MtrunA17_Chr1g0194801 | 40.764 | 157 | 89 | 3 | 11 | 163 | 2 | 158 | 9.49e-33 | 114 |
| Msa0082410 | MtrunA17_Chr1g0176321 | 40.120 | 167 | 79 | 4 | 18 | 164 | 6 | 171 | 1.95e-32 | 114 |
| Msa0082410 | MtrunA17_Chr1g0192651 | 39.877 | 163 | 87 | 5 | 10 | 167 | 5 | 161 | 7.66e-32 | 112 |
| Msa0082410 | MtrunA17_Chr1g0176311 | 40.373 | 161 | 81 | 4 | 18 | 164 | 25 | 184 | 7.69e-32 | 113 |
| Msa0082410 | MtrunA17_Chr5g0427291 | 33.951 | 162 | 91 | 4 | 16 | 161 | 9 | 170 | 1.28e-22 | 89.0 |
| Msa0082410 | MtrunA17_Chr2g0323291 | 30.864 | 162 | 96 | 3 | 19 | 167 | 29 | 187 | 2.70e-18 | 79.0 |
| Msa0082410 | MtrunA17_Chr4g0032261 | 34.211 | 152 | 90 | 4 | 19 | 162 | 9 | 158 | 4.26e-17 | 74.3 |
| Msa0082410 | MtrunA17_Chr4g0001641 | 49.206 | 63 | 32 | 0 | 99 | 161 | 3 | 65 | 1.47e-15 | 67.8 |
| Msa0082410 | MtrunA17_Chr4g0008801 | 31.373 | 153 | 91 | 4 | 19 | 161 | 9 | 157 | 2.89e-13 | 64.3 |
| Msa0082410 | MtrunA17_Chr5g0433951 | 29.221 | 154 | 93 | 5 | 19 | 161 | 9 | 157 | 4.07e-13 | 63.9 |
| Msa0082410 | MtrunA17_Chr2g0294421 | 28.477 | 151 | 98 | 4 | 19 | 161 | 9 | 157 | 2.78e-12 | 61.6 |
| Msa0082410 | MtrunA17_Chr7g0240701 | 30.968 | 155 | 89 | 6 | 19 | 161 | 9 | 157 | 3.65e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082410 | AT2G47710.1 | 63.522 | 159 | 56 | 1 | 8 | 164 | 1 | 159 | 4.28e-72 | 215 |
| Msa0082410 | AT3G11930.1 | 40.556 | 180 | 87 | 5 | 7 | 167 | 20 | 198 | 1.06e-34 | 121 |
| Msa0082410 | AT3G11930.4 | 39.560 | 182 | 88 | 5 | 7 | 167 | 20 | 200 | 3.23e-34 | 120 |
| Msa0082410 | AT3G11930.2 | 39.779 | 181 | 88 | 5 | 7 | 167 | 20 | 199 | 3.25e-34 | 120 |
| Msa0082410 | AT1G09740.2 | 37.654 | 162 | 89 | 4 | 17 | 167 | 10 | 170 | 1.33e-28 | 104 |
| Msa0082410 | AT1G09740.1 | 37.654 | 162 | 89 | 4 | 17 | 167 | 10 | 170 | 1.33e-28 | 104 |
| Msa0082410 | AT3G11930.3 | 34.783 | 207 | 88 | 6 | 7 | 167 | 20 | 225 | 3.22e-28 | 105 |
| Msa0082410 | AT5G49050.1 | 44.737 | 114 | 61 | 1 | 13 | 124 | 37 | 150 | 3.60e-27 | 100 |
| Msa0082410 | AT3G58450.1 | 37.195 | 164 | 89 | 4 | 17 | 167 | 32 | 194 | 1.89e-26 | 100 |
| Msa0082410 | AT3G58450.2 | 36.076 | 158 | 92 | 3 | 17 | 167 | 32 | 187 | 1.47e-25 | 97.4 |
| Msa0082410 | AT3G62550.1 | 36.527 | 167 | 84 | 7 | 7 | 162 | 2 | 157 | 1.29e-24 | 94.4 |
| Msa0082410 | AT1G11360.2 | 33.728 | 169 | 91 | 5 | 10 | 163 | 33 | 195 | 1.30e-18 | 80.5 |
| Msa0082410 | AT1G11360.1 | 33.728 | 169 | 91 | 5 | 10 | 163 | 33 | 195 | 1.30e-18 | 80.5 |
| Msa0082410 | AT1G11360.4 | 33.728 | 169 | 91 | 5 | 10 | 163 | 33 | 195 | 1.30e-18 | 80.5 |
| Msa0082410 | AT1G11360.3 | 33.728 | 169 | 91 | 5 | 10 | 163 | 33 | 195 | 1.30e-18 | 80.5 |
| Msa0082410 | AT1G68300.1 | 35.220 | 159 | 91 | 7 | 11 | 161 | 3 | 157 | 2.33e-17 | 75.5 |
| Msa0082410 | AT5G14680.1 | 28.144 | 167 | 99 | 6 | 12 | 162 | 2 | 163 | 7.79e-15 | 68.9 |
| Msa0082410 | AT3G01520.1 | 29.078 | 141 | 85 | 3 | 30 | 162 | 30 | 163 | 2.54e-13 | 65.1 |
| Msa0082410 | AT3G17020.1 | 28.947 | 152 | 97 | 4 | 19 | 161 | 11 | 160 | 2.87e-13 | 64.7 |
| Msa0082410 | AT3G53990.1 | 26.797 | 153 | 98 | 4 | 19 | 161 | 9 | 157 | 9.98e-13 | 63.2 |
| Msa0082410 | AT2G21620.2 | 29.936 | 157 | 86 | 4 | 17 | 168 | 42 | 179 | 5.42e-12 | 61.6 |
| Msa0082410 | AT2G21620.1 | 29.605 | 152 | 87 | 3 | 17 | 168 | 42 | 173 | 5.95e-12 | 61.6 |
Find 41 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTGATACTTTATGAAAA+TGG | 0.199567 | 1_2:-61282493 | Msa0082410:three_prime_UTR |
| TTCATATACAAAGTAAAATA+AGG | 0.268743 | 1_2:+61282574 | None:intergenic |
| TATAGATCAGTGCTTGGTTT+TGG | 0.285113 | 1_2:+61282760 | None:intergenic |
| TTGTAGGTAGTCACGGTTAT+GGG | 0.301582 | 1_2:-61283337 | Msa0082410:CDS |
| AGTTTATCCTATGGCATGTT+TGG | 0.308645 | 1_2:-61282658 | Msa0082410:three_prime_UTR |
| TCGATTGCAACTAACATTAC+TGG | 0.334213 | 1_2:+61284541 | None:intergenic |
| GTTGTAGGTAGTCACGGTTA+TGG | 0.361010 | 1_2:-61283338 | Msa0082410:CDS |
| CGTGCTTCAATCTTGGTTGT+AGG | 0.387207 | 1_2:-61283353 | Msa0082410:CDS |
| CTCAAATCAGAATCCACAAT+TGG | 0.390759 | 1_2:+61284272 | None:intergenic |
| AAAGTATCGTGCTTCAATCT+TGG | 0.402940 | 1_2:-61283360 | Msa0082410:CDS |
| ACTTCTTCTGTTGGCCTCGC+TGG | 0.403590 | 1_2:-61284412 | Msa0082410:CDS |
| ACAGTGCATACGCTCTGAAA+TGG | 0.408844 | 1_2:-61284507 | Msa0082410:CDS |
| TCTGTTGGCCTCGCTGGTCC+TGG | 0.423133 | 1_2:-61284406 | Msa0082410:intron |
| GATTATATATTTATTCTTGT+AGG | 0.425496 | 1_2:+61282728 | None:intergenic |
| ACGGTTATGGGGCTATAAAA+AGG | 0.451906 | 1_2:-61283325 | Msa0082410:intron |
| AACCAAGCACTGATCTATAC+TGG | 0.452112 | 1_2:-61282756 | Msa0082410:CDS |
| ACAAAGTAAAATAAGGCCTC+CGG | 0.457393 | 1_2:+61282581 | None:intergenic |
| TTGTGACTTAGTTTATCCTA+TGG | 0.465564 | 1_2:-61282667 | Msa0082410:three_prime_UTR |
| ATACTTTATGAAAATGGCAA+TGG | 0.499210 | 1_2:-61282487 | Msa0082410:three_prime_UTR |
| GCTATTTCACTTTAGCTGAA+AGG | 0.508675 | 1_2:+61282706 | None:intergenic |
| TCAGGTAAATGATGTAATAG+TGG | 0.511125 | 1_2:-61283429 | Msa0082410:intron |
| ATCTTGGTTGTAGGTAGTCA+CGG | 0.516671 | 1_2:-61283344 | Msa0082410:CDS |
| CCCACCGCTACTTCTTCTGT+TGG | 0.524480 | 1_2:-61284421 | Msa0082410:CDS |
| CAAAGTAAAATAAGGCCTCC+GGG | 0.542553 | 1_2:+61282582 | None:intergenic |
| TGCCAGTATAGATCAGTGCT+TGG | 0.553700 | 1_2:+61282754 | None:intergenic |
| TGATGTAATAGTGGAGGTGG+TGG | 0.556420 | 1_2:-61283420 | Msa0082410:CDS |
| AAATAAGGCCTCCGGGTAGG+AGG | 0.557118 | 1_2:+61282589 | None:intergenic |
| AAATGATGTAATAGTGGAGG+TGG | 0.562868 | 1_2:-61283423 | Msa0082410:CDS |
| GATTGTTGTTGCCTCCTACC+CGG | 0.564104 | 1_2:-61282600 | Msa0082410:three_prime_UTR |
| GTAAAATAAGGCCTCCGGGT+AGG | 0.586447 | 1_2:+61282586 | None:intergenic |
| CTACAAACCAAACATGCCAT+AGG | 0.591562 | 1_2:+61282651 | None:intergenic |
| AGTGTACGCAGGAGCTGCTG+AGG | 0.594737 | 1_2:-61284300 | Msa0082410:intron |
| TGTAGGTAGTCACGGTTATG+GGG | 0.599167 | 1_2:-61283336 | Msa0082410:CDS |
| ATAGAAAATATGCAATTGTG+TGG | 0.605193 | 1_2:-61282622 | Msa0082410:three_prime_UTR |
| GCCAACAGAAGAAGTAGCGG+TGG | 0.605329 | 1_2:+61284420 | None:intergenic |
| GTAATAGTGGAGGTGGTGGA+AGG | 0.626493 | 1_2:-61283416 | Msa0082410:CDS |
| GGTAAATGATGTAATAGTGG+AGG | 0.637317 | 1_2:-61283426 | Msa0082410:CDS |
| GAGGCCAACAGAAGAAGTAG+CGG | 0.655250 | 1_2:+61284417 | None:intergenic |
| CCAACAGAAGAAGTAGCGGT+GGG | 0.684778 | 1_2:+61284421 | None:intergenic |
| TGTTGTTGCCTCCTACCCGG+AGG | 0.694844 | 1_2:-61282597 | Msa0082410:three_prime_UTR |
| GAATTATACCAGGACCAGCG+AGG | 0.726201 | 1_2:+61284398 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTATGAAAAGAATTA+GGG | + | chr1_2:61283087-61283106 | None:intergenic | 10.0% |
| !! | ATAAAATTATGAAAAGAATT+AGG | + | chr1_2:61283088-61283107 | None:intergenic | 10.0% |
| !!! | TTTCATAATTTTATTTGATA+AGG | - | chr1_2:61283094-61283113 | Msa0082410:intron | 10.0% |
| !!! | ATGATATTATTTTAGATAAT+AGG | - | chr1_2:61283220-61283239 | Msa0082410:intron | 10.0% |
| !! | TAAAATTATGAAAAGAATTA+GGG | + | chr1_2:61283087-61283106 | None:intergenic | 10.0% |
| !! | ATAAAATTATGAAAAGAATT+AGG | + | chr1_2:61283088-61283107 | None:intergenic | 10.0% |
| !!! | TTTCATAATTTTATTTGATA+AGG | - | chr1_2:61283094-61283113 | Msa0082410:intron | 10.0% |
| !!! | ATGATATTATTTTAGATAAT+AGG | - | chr1_2:61283220-61283239 | Msa0082410:intron | 10.0% |
| !!! | ATTTTATTTGATAAGGAAAA+TGG | - | chr1_2:61283101-61283120 | Msa0082410:intron | 15.0% |
| !!! | ATTACATTTATTCATGTTTT+TGG | + | chr1_2:61283974-61283993 | None:intergenic | 15.0% |
| !!! | ACTTTTCATTTTATTTATAC+TGG | - | chr1_2:61284145-61284164 | Msa0082410:intron | 15.0% |
| !!! | CTTTTCATTTTATTTATACT+GGG | - | chr1_2:61284146-61284165 | Msa0082410:intron | 15.0% |
| !!! | TTTTCATTTTATTTATACTG+GGG | - | chr1_2:61284147-61284166 | Msa0082410:intron | 15.0% |
| !! | GATTATATATTTATTCTTGT+AGG | + | chr1_2:61284366-61284385 | None:intergenic | 15.0% |
| !! | TTCATATACAAAGTAAAATA+AGG | + | chr1_2:61284520-61284539 | None:intergenic | 15.0% |
| !! | TTGAAAAATAATCATTGTTA+AGG | - | chr1_2:61284647-61284666 | Msa0082410:five_prime_UTR | 15.0% |
| !!! | ATTTTATTTGATAAGGAAAA+TGG | - | chr1_2:61283101-61283120 | Msa0082410:intron | 15.0% |
| !!! | ATTACATTTATTCATGTTTT+TGG | + | chr1_2:61283974-61283993 | None:intergenic | 15.0% |
| !!! | ACTTTTCATTTTATTTATAC+TGG | - | chr1_2:61284145-61284164 | Msa0082410:intron | 15.0% |
| !!! | CTTTTCATTTTATTTATACT+GGG | - | chr1_2:61284146-61284165 | Msa0082410:intron | 15.0% |
| !!! | TTTTCATTTTATTTATACTG+GGG | - | chr1_2:61284147-61284166 | Msa0082410:intron | 15.0% |
| !! | GATTATATATTTATTCTTGT+AGG | + | chr1_2:61284366-61284385 | None:intergenic | 15.0% |
| !! | TTCATATACAAAGTAAAATA+AGG | + | chr1_2:61284520-61284539 | None:intergenic | 15.0% |
| !!! | TTTGTTGATGTTTTGATAAT+TGG | - | chr1_2:61282748-61282767 | Msa0082410:CDS | 20.0% |
| !! | AACAAAAATAGAAACACATA+CGG | + | chr1_2:61282898-61282917 | None:intergenic | 20.0% |
| !!! | AAAATTTTAAACAACAGTCA+AGG | - | chr1_2:61282934-61282953 | Msa0082410:intron | 20.0% |
| !!! | TAATGTATACATTTTTCCTT+AGG | + | chr1_2:61283587-61283606 | None:intergenic | 20.0% |
| !!! | TTTCATTTTATTTATACTGG+GGG | - | chr1_2:61284148-61284167 | Msa0082410:intron | 20.0% |
| !!! | TTTGTTGATGTTTTGATAAT+TGG | - | chr1_2:61282748-61282767 | Msa0082410:CDS | 20.0% |
| !! | AACAAAAATAGAAACACATA+CGG | + | chr1_2:61282898-61282917 | None:intergenic | 20.0% |
| !!! | AAAATTTTAAACAACAGTCA+AGG | - | chr1_2:61282934-61282953 | Msa0082410:intron | 20.0% |
| !!! | TAATGTATACATTTTTCCTT+AGG | + | chr1_2:61283587-61283606 | None:intergenic | 20.0% |
| !!! | TTTCATTTTATTTATACTGG+GGG | - | chr1_2:61284148-61284167 | Msa0082410:intron | 20.0% |
| ! | ATGAAATTGAGAATTATACC+AGG | + | chr1_2:61282706-61282725 | None:intergenic | 25.0% |
| !!! | TGAATTTTCTCTGGTTTATA+CGG | - | chr1_2:61283136-61283155 | Msa0082410:intron | 25.0% |
| !!! | TTTTTTGTTAGCTTGATGAA+AGG | - | chr1_2:61283332-61283351 | Msa0082410:CDS | 25.0% |
| !!! | TTAATACACACAAGTTTTGT+TGG | + | chr1_2:61283532-61283551 | None:intergenic | 25.0% |
| ! | TTAAGTACTTATGTCATATG+TGG | - | chr1_2:61283613-61283632 | Msa0082410:intron | 25.0% |
| ! | CAAATAACTTAGAAAGCAAA+AGG | + | chr1_2:61284125-61284144 | None:intergenic | 25.0% |
| ! | ATAGAAAATATGCAATTGTG+TGG | - | chr1_2:61284469-61284488 | Msa0082410:CDS | 25.0% |
| ! | ATACTTTATGAAAATGGCAA+TGG | - | chr1_2:61284604-61284623 | Msa0082410:exon | 25.0% |
| ! | ATGAAATTGAGAATTATACC+AGG | + | chr1_2:61282706-61282725 | None:intergenic | 25.0% |
| !!! | TGAATTTTCTCTGGTTTATA+CGG | - | chr1_2:61283136-61283155 | Msa0082410:intron | 25.0% |
| !!! | TTTTTTGTTAGCTTGATGAA+AGG | - | chr1_2:61283332-61283351 | Msa0082410:CDS | 25.0% |
| !!! | TTAATACACACAAGTTTTGT+TGG | + | chr1_2:61283532-61283551 | None:intergenic | 25.0% |
| ! | TTAAGTACTTATGTCATATG+TGG | - | chr1_2:61283613-61283632 | Msa0082410:intron | 25.0% |
| ! | CAAATAACTTAGAAAGCAAA+AGG | + | chr1_2:61284125-61284144 | None:intergenic | 25.0% |
| ! | ATAGAAAATATGCAATTGTG+TGG | - | chr1_2:61284469-61284488 | Msa0082410:CDS | 25.0% |
| ! | ATACTTTATGAAAATGGCAA+TGG | - | chr1_2:61284604-61284623 | Msa0082410:exon | 25.0% |
| !! | TCCGTTAGTGATTTTTAGAA+TGG | - | chr1_2:61282489-61282508 | Msa0082410:three_prime_UTR | 30.0% |
| ! | GCCATTCTAAAAATCACTAA+CGG | + | chr1_2:61282493-61282512 | None:intergenic | 30.0% |
| ! | TAAGGAAAATGGCTTTTGAA+TGG | - | chr1_2:61283112-61283131 | Msa0082410:intron | 30.0% |
| ! | TTGAATGGATGAATTTTCTC+TGG | - | chr1_2:61283127-61283146 | Msa0082410:intron | 30.0% |
| TCCTGTATTTATATGTTGTG+TGG | - | chr1_2:61283159-61283178 | Msa0082410:intron | 30.0% | |
| CCTGTATTTATATGTTGTGT+GGG | - | chr1_2:61283160-61283179 | Msa0082410:intron | 30.0% | |
| TTCACTTAAATTGCTTCAAC+TGG | - | chr1_2:61283411-61283430 | Msa0082410:CDS | 30.0% | |
| TTACCATCATCTTTGTATGT+CGG | - | chr1_2:61283445-61283464 | Msa0082410:intron | 30.0% | |
| ! | TCTGATAACTGAATTTTCTC+AGG | - | chr1_2:61283644-61283663 | Msa0082410:intron | 30.0% |
| TCAGGTAAATGATGTAATAG+TGG | - | chr1_2:61283662-61283681 | Msa0082410:intron | 30.0% | |
| TACAATTATCATCCTTCGTT+TGG | - | chr1_2:61283806-61283825 | Msa0082410:intron | 30.0% | |
| !!! | CTTTTCTGAAACTTGTGAAT+AGG | - | chr1_2:61283865-61283884 | Msa0082410:intron | 30.0% |
| TAGGATATACCATGAATATG+CGG | - | chr1_2:61283884-61283903 | Msa0082410:intron | 30.0% | |
| AATTAAATGCCGCATATTCA+TGG | + | chr1_2:61283896-61283915 | None:intergenic | 30.0% | |
| TAATCTTGTGTTTGTAATCG+TGG | + | chr1_2:61283946-61283965 | None:intergenic | 30.0% | |
| TAACTTAGAAAGCAAAAGGA+AGG | + | chr1_2:61284121-61284140 | None:intergenic | 30.0% | |
| TTGTGACTTAGTTTATCCTA+TGG | - | chr1_2:61284424-61284443 | Msa0082410:CDS | 30.0% | |
| GCCTTGATACTTTATGAAAA+TGG | - | chr1_2:61284598-61284617 | Msa0082410:exon | 30.0% | |
| !! | GCCATTTTCATAAAGTATCA+AGG | + | chr1_2:61284602-61284621 | None:intergenic | 30.0% |
| !! | TCCGTTAGTGATTTTTAGAA+TGG | - | chr1_2:61282489-61282508 | Msa0082410:three_prime_UTR | 30.0% |
| ! | GCCATTCTAAAAATCACTAA+CGG | + | chr1_2:61282493-61282512 | None:intergenic | 30.0% |
| ! | TAAGGAAAATGGCTTTTGAA+TGG | - | chr1_2:61283112-61283131 | Msa0082410:intron | 30.0% |
| ! | TTGAATGGATGAATTTTCTC+TGG | - | chr1_2:61283127-61283146 | Msa0082410:intron | 30.0% |
| TCCTGTATTTATATGTTGTG+TGG | - | chr1_2:61283159-61283178 | Msa0082410:intron | 30.0% | |
| CCTGTATTTATATGTTGTGT+GGG | - | chr1_2:61283160-61283179 | Msa0082410:intron | 30.0% | |
| TTCACTTAAATTGCTTCAAC+TGG | - | chr1_2:61283411-61283430 | Msa0082410:CDS | 30.0% | |
| TTACCATCATCTTTGTATGT+CGG | - | chr1_2:61283445-61283464 | Msa0082410:intron | 30.0% | |
| ! | TCTGATAACTGAATTTTCTC+AGG | - | chr1_2:61283644-61283663 | Msa0082410:intron | 30.0% |
| TCAGGTAAATGATGTAATAG+TGG | - | chr1_2:61283662-61283681 | Msa0082410:intron | 30.0% | |
| TACAATTATCATCCTTCGTT+TGG | - | chr1_2:61283806-61283825 | Msa0082410:intron | 30.0% | |
| !!! | CTTTTCTGAAACTTGTGAAT+AGG | - | chr1_2:61283865-61283884 | Msa0082410:intron | 30.0% |
| TAGGATATACCATGAATATG+CGG | - | chr1_2:61283884-61283903 | Msa0082410:intron | 30.0% | |
| AATTAAATGCCGCATATTCA+TGG | + | chr1_2:61283896-61283915 | None:intergenic | 30.0% | |
| TAATCTTGTGTTTGTAATCG+TGG | + | chr1_2:61283946-61283965 | None:intergenic | 30.0% | |
| TAACTTAGAAAGCAAAAGGA+AGG | + | chr1_2:61284121-61284140 | None:intergenic | 30.0% | |
| TTGTGACTTAGTTTATCCTA+TGG | - | chr1_2:61284424-61284443 | Msa0082410:CDS | 30.0% | |
| GCCTTGATACTTTATGAAAA+TGG | - | chr1_2:61284598-61284617 | Msa0082410:exon | 30.0% | |
| !! | GCCATTTTCATAAAGTATCA+AGG | + | chr1_2:61284602-61284621 | None:intergenic | 30.0% |
| TCGATTGCAACTAACATTAC+TGG | + | chr1_2:61282553-61282572 | None:intergenic | 35.0% | |
| CTCAAATCAGAATCCACAAT+TGG | + | chr1_2:61282822-61282841 | None:intergenic | 35.0% | |
| TTCGGTTGTTACAGATGTTA+TGG | - | chr1_2:61282965-61282984 | Msa0082410:intron | 35.0% | |
| CCCACACAACATATAAATAC+AGG | + | chr1_2:61283163-61283182 | None:intergenic | 35.0% | |
| TTTATATGTTGTGTGGGACT+TGG | - | chr1_2:61283166-61283185 | Msa0082410:intron | 35.0% | |
| ! | TTTGTTAGCTTGATGAAAGG+AGG | - | chr1_2:61283335-61283354 | Msa0082410:CDS | 35.0% |
| TAACCGACATACAAAGATGA+TGG | + | chr1_2:61283451-61283470 | None:intergenic | 35.0% | |
| ! | TCGGTTAATTGTCATGCTTT+TGG | - | chr1_2:61283464-61283483 | Msa0082410:intron | 35.0% |
| AACTAATAGGGATATGGGTA+TGG | + | chr1_2:61283505-61283524 | None:intergenic | 35.0% | |
| TACCCATATCCCTATTAGTT+AGG | - | chr1_2:61283505-61283524 | Msa0082410:intron | 35.0% | |
| ACCCATATCCCTATTAGTTA+GGG | - | chr1_2:61283506-61283525 | Msa0082410:intron | 35.0% | |
| TTTGTTGGCCCTAACTAATA+GGG | + | chr1_2:61283517-61283536 | None:intergenic | 35.0% | |
| ! | TTTTGTTGGCCCTAACTAAT+AGG | + | chr1_2:61283518-61283537 | None:intergenic | 35.0% |
| ! | TTTTTCTACTTTCGAGCCTA+AGG | - | chr1_2:61283568-61283587 | Msa0082410:intron | 35.0% |
| GGTAAATGATGTAATAGTGG+AGG | - | chr1_2:61283665-61283684 | Msa0082410:intron | 35.0% | |
| ! | AAATGATGTAATAGTGGAGG+TGG | - | chr1_2:61283668-61283687 | Msa0082410:intron | 35.0% |
| !! | AAAGTATCGTGCTTCAATCT+TGG | - | chr1_2:61283731-61283750 | Msa0082410:intron | 35.0% |
| TATGGGGCTATAAAAAGGTA+TGG | - | chr1_2:61283771-61283790 | Msa0082410:intron | 35.0% | |
| ! | AAAAAGGTATGGCTTCATTG+TGG | - | chr1_2:61283782-61283801 | Msa0082410:intron | 35.0% |
| TTACATATCACTCCAAACGA+AGG | + | chr1_2:61283821-61283840 | None:intergenic | 35.0% | |
| AGGTTAAAGATTTCAGTGGA+TGG | + | chr1_2:61284000-61284019 | None:intergenic | 35.0% | |
| ATCTTTAACCTGCAGAAGAT+AGG | - | chr1_2:61284009-61284028 | Msa0082410:intron | 35.0% | |
| CAAAAGGAAGGTTTGATTGA+TGG | + | chr1_2:61284109-61284128 | None:intergenic | 35.0% | |
| ! | TATAGATCAGTGCTTGGTTT+TGG | + | chr1_2:61284334-61284353 | None:intergenic | 35.0% |
| ! | GCTATTTCACTTTAGCTGAA+AGG | + | chr1_2:61284388-61284407 | None:intergenic | 35.0% |
| AGTTTATCCTATGGCATGTT+TGG | - | chr1_2:61284433-61284452 | Msa0082410:CDS | 35.0% | |
| ACAAAGTAAAATAAGGCCTC+CGG | + | chr1_2:61284513-61284532 | None:intergenic | 35.0% | |
| TCGATTGCAACTAACATTAC+TGG | + | chr1_2:61282553-61282572 | None:intergenic | 35.0% | |
| CTCAAATCAGAATCCACAAT+TGG | + | chr1_2:61282822-61282841 | None:intergenic | 35.0% | |
| TTCGGTTGTTACAGATGTTA+TGG | - | chr1_2:61282965-61282984 | Msa0082410:intron | 35.0% | |
| CCCACACAACATATAAATAC+AGG | + | chr1_2:61283163-61283182 | None:intergenic | 35.0% | |
| TTTATATGTTGTGTGGGACT+TGG | - | chr1_2:61283166-61283185 | Msa0082410:intron | 35.0% | |
| ! | TTTGTTAGCTTGATGAAAGG+AGG | - | chr1_2:61283335-61283354 | Msa0082410:CDS | 35.0% |
| TAACCGACATACAAAGATGA+TGG | + | chr1_2:61283451-61283470 | None:intergenic | 35.0% | |
| ! | TCGGTTAATTGTCATGCTTT+TGG | - | chr1_2:61283464-61283483 | Msa0082410:intron | 35.0% |
| AACTAATAGGGATATGGGTA+TGG | + | chr1_2:61283505-61283524 | None:intergenic | 35.0% | |
| TACCCATATCCCTATTAGTT+AGG | - | chr1_2:61283505-61283524 | Msa0082410:intron | 35.0% | |
| ACCCATATCCCTATTAGTTA+GGG | - | chr1_2:61283506-61283525 | Msa0082410:intron | 35.0% | |
| TTTGTTGGCCCTAACTAATA+GGG | + | chr1_2:61283517-61283536 | None:intergenic | 35.0% | |
| ! | TTTTGTTGGCCCTAACTAAT+AGG | + | chr1_2:61283518-61283537 | None:intergenic | 35.0% |
| ! | TTTTTCTACTTTCGAGCCTA+AGG | - | chr1_2:61283568-61283587 | Msa0082410:intron | 35.0% |
| GGTAAATGATGTAATAGTGG+AGG | - | chr1_2:61283665-61283684 | Msa0082410:intron | 35.0% | |
| ! | AAATGATGTAATAGTGGAGG+TGG | - | chr1_2:61283668-61283687 | Msa0082410:intron | 35.0% |
| !! | AAAGTATCGTGCTTCAATCT+TGG | - | chr1_2:61283731-61283750 | Msa0082410:intron | 35.0% |
| TATGGGGCTATAAAAAGGTA+TGG | - | chr1_2:61283771-61283790 | Msa0082410:intron | 35.0% | |
| ! | AAAAAGGTATGGCTTCATTG+TGG | - | chr1_2:61283782-61283801 | Msa0082410:intron | 35.0% |
| TTACATATCACTCCAAACGA+AGG | + | chr1_2:61283821-61283840 | None:intergenic | 35.0% | |
| AGGTTAAAGATTTCAGTGGA+TGG | + | chr1_2:61284000-61284019 | None:intergenic | 35.0% | |
| ATCTTTAACCTGCAGAAGAT+AGG | - | chr1_2:61284009-61284028 | Msa0082410:intron | 35.0% | |
| CAAAAGGAAGGTTTGATTGA+TGG | + | chr1_2:61284109-61284128 | None:intergenic | 35.0% | |
| ! | TATAGATCAGTGCTTGGTTT+TGG | + | chr1_2:61284334-61284353 | None:intergenic | 35.0% |
| ! | GCTATTTCACTTTAGCTGAA+AGG | + | chr1_2:61284388-61284407 | None:intergenic | 35.0% |
| AGTTTATCCTATGGCATGTT+TGG | - | chr1_2:61284433-61284452 | Msa0082410:CDS | 35.0% | |
| ACAAAGTAAAATAAGGCCTC+CGG | + | chr1_2:61284513-61284532 | None:intergenic | 35.0% | |
| TTGTGCTAATTAGTGTACGC+AGG | - | chr1_2:61282780-61282799 | Msa0082410:CDS | 40.0% | |
| ! | GATGAAAGGAGGTAAGTTGA+AGG | - | chr1_2:61283346-61283365 | Msa0082410:CDS | 40.0% |
| GCCCTAACTAATAGGGATAT+GGG | + | chr1_2:61283510-61283529 | None:intergenic | 40.0% | |
| ATCTTGGTTGTAGGTAGTCA+CGG | - | chr1_2:61283747-61283766 | Msa0082410:intron | 40.0% | |
| TTGTAGGTAGTCACGGTTAT+GGG | - | chr1_2:61283754-61283773 | Msa0082410:intron | 40.0% | |
| ACGGTTATGGGGCTATAAAA+AGG | - | chr1_2:61283766-61283785 | Msa0082410:intron | 40.0% | |
| TCTTGTGTTTGTAATCGTGG+TGG | + | chr1_2:61283943-61283962 | None:intergenic | 40.0% | |
| CTGCAGGTTAAAGATTTCAG+TGG | + | chr1_2:61284004-61284023 | None:intergenic | 40.0% | |
| TCGAGTGTAGTGAGTGAATT+AGG | + | chr1_2:61284225-61284244 | None:intergenic | 40.0% | |
| ! | ACTCGACTCTTTTAATCTGC+AGG | - | chr1_2:61284239-61284258 | Msa0082410:CDS | 40.0% |
| ! | CTCGACTCTTTTAATCTGCA+GGG | - | chr1_2:61284240-61284259 | Msa0082410:CDS | 40.0% |
| !! | AACCAAGCACTGATCTATAC+TGG | - | chr1_2:61284335-61284354 | Msa0082410:intron | 40.0% |
| CTACAAACCAAACATGCCAT+AGG | + | chr1_2:61284443-61284462 | None:intergenic | 40.0% | |
| CAAAGTAAAATAAGGCCTCC+GGG | + | chr1_2:61284512-61284531 | None:intergenic | 40.0% | |
| TTGTGCTAATTAGTGTACGC+AGG | - | chr1_2:61282780-61282799 | Msa0082410:CDS | 40.0% | |
| ! | GATGAAAGGAGGTAAGTTGA+AGG | - | chr1_2:61283346-61283365 | Msa0082410:CDS | 40.0% |
| GCCCTAACTAATAGGGATAT+GGG | + | chr1_2:61283510-61283529 | None:intergenic | 40.0% | |
| ATCTTGGTTGTAGGTAGTCA+CGG | - | chr1_2:61283747-61283766 | Msa0082410:intron | 40.0% | |
| TTGTAGGTAGTCACGGTTAT+GGG | - | chr1_2:61283754-61283773 | Msa0082410:intron | 40.0% | |
| ACGGTTATGGGGCTATAAAA+AGG | - | chr1_2:61283766-61283785 | Msa0082410:intron | 40.0% | |
| TCTTGTGTTTGTAATCGTGG+TGG | + | chr1_2:61283943-61283962 | None:intergenic | 40.0% | |
| CTGCAGGTTAAAGATTTCAG+TGG | + | chr1_2:61284004-61284023 | None:intergenic | 40.0% | |
| TCGAGTGTAGTGAGTGAATT+AGG | + | chr1_2:61284225-61284244 | None:intergenic | 40.0% | |
| ! | ACTCGACTCTTTTAATCTGC+AGG | - | chr1_2:61284239-61284258 | Msa0082410:CDS | 40.0% |
| ! | CTCGACTCTTTTAATCTGCA+GGG | - | chr1_2:61284240-61284259 | Msa0082410:CDS | 40.0% |
| !! | AACCAAGCACTGATCTATAC+TGG | - | chr1_2:61284335-61284354 | Msa0082410:intron | 40.0% |
| CTACAAACCAAACATGCCAT+AGG | + | chr1_2:61284443-61284462 | None:intergenic | 40.0% | |
| CAAAGTAAAATAAGGCCTCC+GGG | + | chr1_2:61284512-61284531 | None:intergenic | 40.0% | |
| !! | ACAGTGCATACGCTCTGAAA+TGG | - | chr1_2:61282584-61282603 | Msa0082410:three_prime_UTR | 45.0% |
| ! | TGCTGAGGTTTTGCCAATTG+TGG | - | chr1_2:61282806-61282825 | Msa0082410:CDS | 45.0% |
| ACAGTCAAGGTGTGCGATTT+CGG | - | chr1_2:61282947-61282966 | Msa0082410:intron | 45.0% | |
| GGGACTTGGAGCATACTATA+TGG | - | chr1_2:61283180-61283199 | Msa0082410:intron | 45.0% | |
| GGCCCTAACTAATAGGGATA+TGG | + | chr1_2:61283511-61283530 | None:intergenic | 45.0% | |
| ! | TGATGTAATAGTGGAGGTGG+TGG | - | chr1_2:61283671-61283690 | Msa0082410:intron | 45.0% |
| CGTGCTTCAATCTTGGTTGT+AGG | - | chr1_2:61283738-61283757 | Msa0082410:intron | 45.0% | |
| GTTGTAGGTAGTCACGGTTA+TGG | - | chr1_2:61283753-61283772 | Msa0082410:intron | 45.0% | |
| TGTAGGTAGTCACGGTTATG+GGG | - | chr1_2:61283755-61283774 | Msa0082410:intron | 45.0% | |
| ! | GACTCTTTTAATCTGCAGGG+CGG | - | chr1_2:61284243-61284262 | Msa0082410:CDS | 45.0% |
| ! | TTAATCTGCAGGGCGGTTTT+AGG | - | chr1_2:61284250-61284269 | Msa0082410:CDS | 45.0% |
| TGCCAGTATAGATCAGTGCT+TGG | + | chr1_2:61284340-61284359 | None:intergenic | 45.0% | |
| !! | ACAGTGCATACGCTCTGAAA+TGG | - | chr1_2:61282584-61282603 | Msa0082410:three_prime_UTR | 45.0% |
| ! | TGCTGAGGTTTTGCCAATTG+TGG | - | chr1_2:61282806-61282825 | Msa0082410:CDS | 45.0% |
| ACAGTCAAGGTGTGCGATTT+CGG | - | chr1_2:61282947-61282966 | Msa0082410:intron | 45.0% | |
| GGGACTTGGAGCATACTATA+TGG | - | chr1_2:61283180-61283199 | Msa0082410:intron | 45.0% | |
| GGCCCTAACTAATAGGGATA+TGG | + | chr1_2:61283511-61283530 | None:intergenic | 45.0% | |
| ! | TGATGTAATAGTGGAGGTGG+TGG | - | chr1_2:61283671-61283690 | Msa0082410:intron | 45.0% |
| CGTGCTTCAATCTTGGTTGT+AGG | - | chr1_2:61283738-61283757 | Msa0082410:intron | 45.0% | |
| GTTGTAGGTAGTCACGGTTA+TGG | - | chr1_2:61283753-61283772 | Msa0082410:intron | 45.0% | |
| TGTAGGTAGTCACGGTTATG+GGG | - | chr1_2:61283755-61283774 | Msa0082410:intron | 45.0% | |
| ! | GACTCTTTTAATCTGCAGGG+CGG | - | chr1_2:61284243-61284262 | Msa0082410:CDS | 45.0% |
| ! | TTAATCTGCAGGGCGGTTTT+AGG | - | chr1_2:61284250-61284269 | Msa0082410:CDS | 45.0% |
| TGCCAGTATAGATCAGTGCT+TGG | + | chr1_2:61284340-61284359 | None:intergenic | 45.0% | |
| CCAACAGAAGAAGTAGCGGT+GGG | + | chr1_2:61282673-61282692 | None:intergenic | 50.0% | |
| GAGGCCAACAGAAGAAGTAG+CGG | + | chr1_2:61282677-61282696 | None:intergenic | 50.0% | |
| GAATTATACCAGGACCAGCG+AGG | + | chr1_2:61282696-61282715 | None:intergenic | 50.0% | |
| !! | GTAATAGTGGAGGTGGTGGA+AGG | - | chr1_2:61283675-61283694 | Msa0082410:intron | 50.0% |
| TACTGCTGCCTATCTTCTGC+AGG | + | chr1_2:61284020-61284039 | None:intergenic | 50.0% | |
| ! | GATTGTTGTTGCCTCCTACC+CGG | - | chr1_2:61284491-61284510 | Msa0082410:CDS | 50.0% |
| GTAAAATAAGGCCTCCGGGT+AGG | + | chr1_2:61284508-61284527 | None:intergenic | 50.0% | |
| CCAACAGAAGAAGTAGCGGT+GGG | + | chr1_2:61282673-61282692 | None:intergenic | 50.0% | |
| GAGGCCAACAGAAGAAGTAG+CGG | + | chr1_2:61282677-61282696 | None:intergenic | 50.0% | |
| GAATTATACCAGGACCAGCG+AGG | + | chr1_2:61282696-61282715 | None:intergenic | 50.0% | |
| !! | GTAATAGTGGAGGTGGTGGA+AGG | - | chr1_2:61283675-61283694 | Msa0082410:intron | 50.0% |
| TACTGCTGCCTATCTTCTGC+AGG | + | chr1_2:61284020-61284039 | None:intergenic | 50.0% | |
| ! | GATTGTTGTTGCCTCCTACC+CGG | - | chr1_2:61284491-61284510 | Msa0082410:CDS | 50.0% |
| GTAAAATAAGGCCTCCGGGT+AGG | + | chr1_2:61284508-61284527 | None:intergenic | 50.0% | |
| CCCACCGCTACTTCTTCTGT+TGG | - | chr1_2:61282670-61282689 | Msa0082410:three_prime_UTR | 55.0% | |
| GCCAACAGAAGAAGTAGCGG+TGG | + | chr1_2:61282674-61282693 | None:intergenic | 55.0% | |
| ! | ACTTCTTCTGTTGGCCTCGC+TGG | - | chr1_2:61282679-61282698 | Msa0082410:three_prime_UTR | 55.0% |
| AAATAAGGCCTCCGGGTAGG+AGG | + | chr1_2:61284505-61284524 | None:intergenic | 55.0% | |
| CCCACCGCTACTTCTTCTGT+TGG | - | chr1_2:61282670-61282689 | Msa0082410:three_prime_UTR | 55.0% | |
| GCCAACAGAAGAAGTAGCGG+TGG | + | chr1_2:61282674-61282693 | None:intergenic | 55.0% | |
| ! | ACTTCTTCTGTTGGCCTCGC+TGG | - | chr1_2:61282679-61282698 | Msa0082410:three_prime_UTR | 55.0% |
| AAATAAGGCCTCCGGGTAGG+AGG | + | chr1_2:61284505-61284524 | None:intergenic | 55.0% | |
| AGTGTACGCAGGAGCTGCTG+AGG | - | chr1_2:61282791-61282810 | Msa0082410:CDS | 60.0% | |
| TGTTGTTGCCTCCTACCCGG+AGG | - | chr1_2:61284494-61284513 | Msa0082410:CDS | 60.0% | |
| AGTGTACGCAGGAGCTGCTG+AGG | - | chr1_2:61282791-61282810 | Msa0082410:CDS | 60.0% | |
| TGTTGTTGCCTCCTACCCGG+AGG | - | chr1_2:61284494-61284513 | Msa0082410:CDS | 60.0% | |
| ! | TCTGTTGGCCTCGCTGGTCC+TGG | - | chr1_2:61282685-61282704 | Msa0082410:three_prime_UTR | 65.0% |
| ! | TCTGTTGGCCTCGCTGGTCC+TGG | - | chr1_2:61282685-61282704 | Msa0082410:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 61282446 | 61284667 | 61282446 | ID=Msa0082410;Name=Msa0082410 |
| chr1_2 | mRNA | 61282446 | 61284667 | 61282446 | ID=Msa0082410-mRNA-1;Parent=Msa0082410;Name=Msa0082410-mRNA-1;_AED=0.03;_eAED=0.03;_QI=62|0.66|0.75|1|1|1|4|292|176 |
| chr1_2 | exon | 61282446 | 61282852 | 61282446 | ID=Msa0082410-mRNA-1:exon:20183;Parent=Msa0082410-mRNA-1 |
| chr1_2 | exon | 61283326 | 61283447 | 61283326 | ID=Msa0082410-mRNA-1:exon:20182;Parent=Msa0082410-mRNA-1 |
| chr1_2 | exon | 61284217 | 61284311 | 61284217 | ID=Msa0082410-mRNA-1:exon:20181;Parent=Msa0082410-mRNA-1 |
| chr1_2 | exon | 61284407 | 61284667 | 61284407 | ID=Msa0082410-mRNA-1:exon:20180;Parent=Msa0082410-mRNA-1 |
| chr1_2 | five_prime_UTR | 61284606 | 61284667 | 61284606 | ID=Msa0082410-mRNA-1:five_prime_utr;Parent=Msa0082410-mRNA-1 |
| chr1_2 | CDS | 61284407 | 61284605 | 61284407 | ID=Msa0082410-mRNA-1:cds;Parent=Msa0082410-mRNA-1 |
| chr1_2 | CDS | 61284217 | 61284311 | 61284217 | ID=Msa0082410-mRNA-1:cds;Parent=Msa0082410-mRNA-1 |
| chr1_2 | CDS | 61283326 | 61283447 | 61283326 | ID=Msa0082410-mRNA-1:cds;Parent=Msa0082410-mRNA-1 |
| chr1_2 | CDS | 61282738 | 61282852 | 61282738 | ID=Msa0082410-mRNA-1:cds;Parent=Msa0082410-mRNA-1 |
| chr1_2 | three_prime_UTR | 61282446 | 61282737 | 61282446 | ID=Msa0082410-mRNA-1:three_prime_utr;Parent=Msa0082410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
