Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174810 | XP_003591541.1 | 95.882 | 170 | 4 | 1 | 1 | 170 | 1 | 167 | 4.04e-113 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174810 | sp|Q8LGG8|USPAL_ARATH | 28.676 | 136 | 95 | 2 | 30 | 165 | 30 | 163 | 7.40e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174810 | G7IF74 | 95.882 | 170 | 4 | 1 | 1 | 170 | 1 | 167 | 1.93e-113 | 328 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0082240 | Msa0174810 | 0.954117 | 6.082514e-112 | -8.615850e-47 |
| Msa0082410 | Msa0174810 | 0.934183 | 5.988946e-96 | -8.615850e-47 |
| Msa0128810 | Msa0174810 | 0.882333 | 1.137818e-70 | -8.615850e-47 |
| Msa0128970 | Msa0174810 | 0.917217 | 6.945118e-86 | -8.615850e-47 |
| Msa0174810 | Msa0387300 | 0.820862 | 5.479792e-53 | -8.615850e-47 |
| Msa0174810 | Msa0434140 | 0.842871 | 1.983794e-58 | -8.615850e-47 |
| Msa0174810 | Msa0477660 | 0.838963 | 2.103733e-57 | -8.615850e-47 |
| Msa0174810 | Msa0521720 | 0.841238 | 5.364281e-58 | -8.615850e-47 |
| Msa0174810 | Msa1370820 | 0.985186 | 8.622599e-163 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174810 | MtrunA17_Chr1g0195661 | 95.882 | 170 | 4 | 1 | 1 | 170 | 1 | 167 | 3.72e-117 | 328 |
| Msa0174810 | MtrunA17_Chr7g0269301 | 68.590 | 156 | 46 | 2 | 16 | 170 | 9 | 162 | 2.15e-66 | 199 |
| Msa0174810 | MtrunA17_Chr1g0194801 | 40.252 | 159 | 90 | 3 | 11 | 166 | 2 | 158 | 2.67e-34 | 118 |
| Msa0174810 | MtrunA17_Chr1g0176321 | 40.462 | 173 | 79 | 5 | 18 | 170 | 6 | 174 | 1.80e-33 | 116 |
| Msa0174810 | MtrunA17_Chr1g0192651 | 39.752 | 161 | 89 | 4 | 10 | 168 | 5 | 159 | 1.35e-32 | 114 |
| Msa0174810 | MtrunA17_Chr1g0176311 | 37.805 | 164 | 90 | 3 | 18 | 170 | 25 | 187 | 6.08e-31 | 110 |
| Msa0174810 | MtrunA17_Chr5g0427291 | 32.716 | 162 | 96 | 3 | 16 | 164 | 9 | 170 | 2.91e-22 | 88.2 |
| Msa0174810 | MtrunA17_Chr2g0323291 | 30.189 | 159 | 98 | 4 | 19 | 167 | 29 | 184 | 1.86e-16 | 73.9 |
| Msa0174810 | MtrunA17_Chr4g0032261 | 32.903 | 155 | 91 | 4 | 19 | 165 | 9 | 158 | 2.57e-16 | 72.0 |
| Msa0174810 | MtrunA17_Chr4g0001641 | 49.206 | 63 | 32 | 0 | 102 | 164 | 3 | 65 | 1.05e-15 | 68.2 |
| Msa0174810 | MtrunA17_Chr6g0450171 | 24.051 | 158 | 109 | 3 | 17 | 165 | 8 | 163 | 1.31e-12 | 62.8 |
| Msa0174810 | MtrunA17_Chr5g0433951 | 29.032 | 155 | 95 | 5 | 19 | 164 | 9 | 157 | 1.78e-12 | 62.0 |
| Msa0174810 | MtrunA17_Chr2g0294421 | 29.375 | 160 | 100 | 5 | 19 | 170 | 9 | 163 | 3.08e-12 | 61.2 |
| Msa0174810 | MtrunA17_Chr7g0240701 | 29.299 | 157 | 92 | 5 | 19 | 164 | 9 | 157 | 8.72e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174810 | AT2G47710.1 | 62.195 | 164 | 57 | 2 | 8 | 169 | 1 | 161 | 8.68e-71 | 211 |
| Msa0174810 | AT3G11930.1 | 40.449 | 178 | 87 | 6 | 7 | 167 | 20 | 195 | 5.95e-34 | 119 |
| Msa0174810 | AT3G11930.2 | 40.223 | 179 | 87 | 6 | 7 | 167 | 20 | 196 | 8.44e-34 | 118 |
| Msa0174810 | AT3G11930.4 | 40.000 | 180 | 87 | 6 | 7 | 167 | 20 | 197 | 1.17e-33 | 118 |
| Msa0174810 | AT1G09740.2 | 38.365 | 159 | 88 | 5 | 17 | 167 | 10 | 166 | 3.55e-28 | 103 |
| Msa0174810 | AT1G09740.1 | 38.365 | 159 | 88 | 5 | 17 | 167 | 10 | 166 | 3.55e-28 | 103 |
| Msa0174810 | AT3G11930.3 | 35.096 | 208 | 83 | 8 | 7 | 167 | 20 | 222 | 1.02e-27 | 103 |
| Msa0174810 | AT3G58450.1 | 37.952 | 166 | 82 | 5 | 17 | 167 | 32 | 191 | 1.02e-26 | 100 |
| Msa0174810 | AT3G62550.1 | 36.905 | 168 | 85 | 8 | 7 | 165 | 2 | 157 | 1.44e-25 | 96.3 |
| Msa0174810 | AT3G58450.2 | 36.420 | 162 | 83 | 5 | 17 | 167 | 32 | 184 | 1.59e-25 | 97.4 |
| Msa0174810 | AT5G49050.1 | 43.590 | 117 | 61 | 2 | 13 | 127 | 37 | 150 | 3.67e-25 | 95.1 |
| Msa0174810 | AT1G11360.2 | 33.143 | 175 | 93 | 6 | 10 | 169 | 33 | 198 | 1.48e-19 | 82.8 |
| Msa0174810 | AT1G11360.1 | 33.143 | 175 | 93 | 6 | 10 | 169 | 33 | 198 | 1.48e-19 | 82.8 |
| Msa0174810 | AT1G11360.4 | 33.143 | 175 | 93 | 6 | 10 | 169 | 33 | 198 | 1.48e-19 | 82.8 |
| Msa0174810 | AT1G11360.3 | 33.143 | 175 | 93 | 6 | 10 | 169 | 33 | 198 | 1.48e-19 | 82.8 |
| Msa0174810 | AT1G68300.1 | 32.278 | 158 | 100 | 4 | 11 | 164 | 3 | 157 | 2.73e-18 | 77.4 |
| Msa0174810 | AT5G14680.1 | 27.647 | 170 | 99 | 5 | 12 | 165 | 2 | 163 | 4.14e-16 | 72.4 |
| Msa0174810 | AT3G01520.1 | 28.676 | 136 | 95 | 2 | 30 | 165 | 30 | 163 | 7.52e-15 | 68.9 |
| Msa0174810 | AT3G17020.1 | 28.477 | 151 | 102 | 2 | 19 | 164 | 11 | 160 | 8.54e-13 | 63.2 |
| Msa0174810 | AT3G53990.1 | 25.325 | 154 | 102 | 4 | 19 | 164 | 9 | 157 | 2.71e-12 | 61.6 |
| Msa0174810 | AT2G21620.2 | 30.612 | 147 | 85 | 4 | 17 | 163 | 42 | 171 | 1.99e-11 | 60.1 |
| Msa0174810 | AT2G21620.1 | 29.932 | 147 | 80 | 4 | 17 | 163 | 42 | 165 | 2.06e-11 | 60.1 |
Find 41 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTGATACTTTATGAAAA+TGG | 0.199567 | 1_4:-60585660 | Msa0174810:three_prime_UTR |
| TTCATATACAAAGTAAAATA+AGG | 0.268743 | 1_4:+60585742 | None:intergenic |
| TTGTAGGTAGTCACGGTTAT+GGG | 0.301582 | 1_4:-60586488 | Msa0174810:CDS |
| AGTTTATCCTATGGCATGTT+TGG | 0.308645 | 1_4:-60585826 | Msa0174810:three_prime_UTR |
| TCGATTGCAACTAACATTAC+TGG | 0.334213 | 1_4:+60587594 | None:intergenic |
| GTTGTAGGTAGTCACGGTTA+TGG | 0.361010 | 1_4:-60586489 | Msa0174810:CDS |
| CGTGCTTCAATCTTGGTTGT+AGG | 0.387207 | 1_4:-60586504 | Msa0174810:CDS |
| CTCAAATCAGAATCCACAAT+TGG | 0.390759 | 1_4:+60587325 | None:intergenic |
| AAAGTATCGTGCTTCAATCT+TGG | 0.402940 | 1_4:-60586511 | Msa0174810:CDS |
| ACTTCTTCTGTTGGCCTCGC+TGG | 0.403590 | 1_4:-60587465 | Msa0174810:CDS |
| ACAGTGCATACGCTCTGAAA+TGG | 0.408844 | 1_4:-60587560 | Msa0174810:CDS |
| TCTGTTGGCCTCGCTGGTCC+TGG | 0.423133 | 1_4:-60587459 | Msa0174810:intron |
| GATTATATATTTATTCTTGT+AGG | 0.425496 | 1_4:+60585896 | None:intergenic |
| AACCAAGCACTGATCTATAC+TGG | 0.427898 | 1_4:-60585924 | Msa0174810:exon |
| ACGGTTATGGGGCTATAAAA+AGG | 0.451906 | 1_4:-60586476 | Msa0174810:intron |
| ACAAAGTAAAATAAGGCCTC+CGG | 0.457393 | 1_4:+60585749 | None:intergenic |
| TTGTGACTTAGTTTATCCTA+TGG | 0.465564 | 1_4:-60585835 | Msa0174810:three_prime_UTR |
| ATACTTTATGAAAATGGCAA+TGG | 0.499210 | 1_4:-60585654 | Msa0174810:three_prime_UTR |
| GCTATTTCACTTTAGCTGAA+AGG | 0.508675 | 1_4:+60585874 | None:intergenic |
| TCAGGTAAATGATGTAATAG+TGG | 0.511125 | 1_4:-60586580 | Msa0174810:intron |
| ATCTTGGTTGTAGGTAGTCA+CGG | 0.516671 | 1_4:-60586495 | Msa0174810:CDS |
| CCCACCGCTACTTCTTCTGT+TGG | 0.524480 | 1_4:-60587474 | Msa0174810:CDS |
| CAAAGTAAAATAAGGCCTCC+GGG | 0.542553 | 1_4:+60585750 | None:intergenic |
| TGCCAGTATAGATCAGTGCT+TGG | 0.553700 | 1_4:+60585922 | None:intergenic |
| TGATGTAATAGTGGAGGTGG+TGG | 0.556420 | 1_4:-60586571 | Msa0174810:CDS |
| AAATAAGGCCTCCGGGTAGG+AGG | 0.557118 | 1_4:+60585757 | None:intergenic |
| AAATGATGTAATAGTGGAGG+TGG | 0.562868 | 1_4:-60586574 | Msa0174810:CDS |
| GATTGTTGTTGCCTCCTACC+CGG | 0.564104 | 1_4:-60585768 | Msa0174810:three_prime_UTR |
| GTAAAATAAGGCCTCCGGGT+AGG | 0.586447 | 1_4:+60585754 | None:intergenic |
| CTACAAACCAAACATGCCAT+AGG | 0.591562 | 1_4:+60585819 | None:intergenic |
| AGTGTACGCAGGAGCTGCTG+AGG | 0.594737 | 1_4:-60587353 | Msa0174810:CDS |
| TGTAGGTAGTCACGGTTATG+GGG | 0.599167 | 1_4:-60586487 | Msa0174810:CDS |
| ATAGAAAATATGCAATTGTG+TGG | 0.605193 | 1_4:-60585790 | Msa0174810:three_prime_UTR |
| GCCAACAGAAGAAGTAGCGG+TGG | 0.605329 | 1_4:+60587473 | None:intergenic |
| TTGTGCTAATTAGTGTACGC+AGG | 0.608881 | 1_4:-60587364 | Msa0174810:intron |
| GTAATAGTGGAGGTGGTGGA+AGG | 0.626493 | 1_4:-60586567 | Msa0174810:CDS |
| GGTAAATGATGTAATAGTGG+AGG | 0.637317 | 1_4:-60586577 | Msa0174810:CDS |
| GAGGCCAACAGAAGAAGTAG+CGG | 0.655250 | 1_4:+60587470 | None:intergenic |
| CCAACAGAAGAAGTAGCGGT+GGG | 0.684778 | 1_4:+60587474 | None:intergenic |
| TGTTGTTGCCTCCTACCCGG+AGG | 0.694844 | 1_4:-60585765 | Msa0174810:three_prime_UTR |
| GAATTATACCAGGACCAGCG+AGG | 0.726201 | 1_4:+60587451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTATGAAAAGAATTA+GGG | + | chr1_4:60586163-60586182 | None:intergenic | 10.0% |
| !! | ATAAAATTATGAAAAGAATT+AGG | + | chr1_4:60586164-60586183 | None:intergenic | 10.0% |
| !!! | TTTCATAATTTTATTTGATA+AGG | - | chr1_4:60586170-60586189 | Msa0174810:intron | 10.0% |
| !!! | ATGATATTATTTTAGATAAT+AGG | - | chr1_4:60586296-60586315 | Msa0174810:intron | 10.0% |
| !! | TAAAATTATGAAAAGAATTA+GGG | + | chr1_4:60586163-60586182 | None:intergenic | 10.0% |
| !! | ATAAAATTATGAAAAGAATT+AGG | + | chr1_4:60586164-60586183 | None:intergenic | 10.0% |
| !!! | TTTCATAATTTTATTTGATA+AGG | - | chr1_4:60586170-60586189 | Msa0174810:intron | 10.0% |
| !!! | ATGATATTATTTTAGATAAT+AGG | - | chr1_4:60586296-60586315 | Msa0174810:intron | 10.0% |
| !!! | ATTTTATTTGATAAGGAAAA+TGG | - | chr1_4:60586177-60586196 | Msa0174810:intron | 15.0% |
| !! | AAAAATGTTAGAATTAAATG+CGG | + | chr1_4:60586958-60586977 | None:intergenic | 15.0% |
| !!! | ATTACATTTATTCATGTTTT+TGG | + | chr1_4:60587025-60587044 | None:intergenic | 15.0% |
| !! | AAATAAACTTAAAAAGCAAA+AGG | + | chr1_4:60587175-60587194 | None:intergenic | 15.0% |
| !!! | ACTTTTCATTTTATTTATAC+TGG | - | chr1_4:60587196-60587215 | Msa0174810:intron | 15.0% |
| !!! | CTTTTCATTTTATTTATACT+GGG | - | chr1_4:60587197-60587216 | Msa0174810:intron | 15.0% |
| !!! | TTTTCATTTTATTTATACTG+GGG | - | chr1_4:60587198-60587217 | Msa0174810:intron | 15.0% |
| !! | GATTATATATTTATTCTTGT+AGG | + | chr1_4:60587418-60587437 | None:intergenic | 15.0% |
| !! | TTCATATACAAAGTAAAATA+AGG | + | chr1_4:60587572-60587591 | None:intergenic | 15.0% |
| !! | TTGAAAAATAATCATTGTTA+AGG | - | chr1_4:60587700-60587719 | Msa0174810:five_prime_UTR | 15.0% |
| !!! | ATTTTATTTGATAAGGAAAA+TGG | - | chr1_4:60586177-60586196 | Msa0174810:intron | 15.0% |
| !! | AAAAATGTTAGAATTAAATG+CGG | + | chr1_4:60586958-60586977 | None:intergenic | 15.0% |
| !!! | ATTACATTTATTCATGTTTT+TGG | + | chr1_4:60587025-60587044 | None:intergenic | 15.0% |
| !! | AAATAAACTTAAAAAGCAAA+AGG | + | chr1_4:60587175-60587194 | None:intergenic | 15.0% |
| !!! | ACTTTTCATTTTATTTATAC+TGG | - | chr1_4:60587196-60587215 | Msa0174810:intron | 15.0% |
| !!! | CTTTTCATTTTATTTATACT+GGG | - | chr1_4:60587197-60587216 | Msa0174810:intron | 15.0% |
| !!! | TTTTCATTTTATTTATACTG+GGG | - | chr1_4:60587198-60587217 | Msa0174810:intron | 15.0% |
| !! | GATTATATATTTATTCTTGT+AGG | + | chr1_4:60587418-60587437 | None:intergenic | 15.0% |
| !! | TTCATATACAAAGTAAAATA+AGG | + | chr1_4:60587572-60587591 | None:intergenic | 15.0% |
| !!! | TTTGTTGATGTTTTGATAAT+TGG | - | chr1_4:60585915-60585934 | Msa0174810:exon | 20.0% |
| !! | AACAAAAATAGAAACACATA+CGG | + | chr1_4:60586065-60586084 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTAGTTTGATGAA+AGG | - | chr1_4:60586408-60586427 | Msa0174810:intron | 20.0% |
| !!! | TTTCATTTTATTTATACTGG+GGG | - | chr1_4:60587199-60587218 | Msa0174810:intron | 20.0% |
| !!! | TTTGTTGATGTTTTGATAAT+TGG | - | chr1_4:60585915-60585934 | Msa0174810:exon | 20.0% |
| !! | AACAAAAATAGAAACACATA+CGG | + | chr1_4:60586065-60586084 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTAGTTTGATGAA+AGG | - | chr1_4:60586408-60586427 | Msa0174810:intron | 20.0% |
| !!! | TTTCATTTTATTTATACTGG+GGG | - | chr1_4:60587199-60587218 | Msa0174810:intron | 20.0% |
| ! | ATGAAATTGAGAATTATACC+AGG | + | chr1_4:60585873-60585892 | None:intergenic | 25.0% |
| !!! | TGAATTTTCTCTGGTTTATA+CGG | - | chr1_4:60586212-60586231 | Msa0174810:intron | 25.0% |
| !!! | TTAATACACACAAGTTTTGT+TGG | + | chr1_4:60586601-60586620 | None:intergenic | 25.0% |
| ! | TTAAGTACTTATGTCATATG+TGG | - | chr1_4:60586682-60586701 | Msa0174810:intron | 25.0% |
| ! | AAACTTAAAAAGCAAAAGGA+AGG | + | chr1_4:60587171-60587190 | None:intergenic | 25.0% |
| ! | ATAGAAAATATGCAATTGTG+TGG | - | chr1_4:60587521-60587540 | Msa0174810:CDS | 25.0% |
| !! | GCAAAAAACAGTAATTTTTC+AGG | + | chr1_4:60587633-60587652 | None:intergenic | 25.0% |
| ! | ATACTTTATGAAAATGGCAA+TGG | - | chr1_4:60587657-60587676 | Msa0174810:exon | 25.0% |
| ! | ATGAAATTGAGAATTATACC+AGG | + | chr1_4:60585873-60585892 | None:intergenic | 25.0% |
| !!! | TGAATTTTCTCTGGTTTATA+CGG | - | chr1_4:60586212-60586231 | Msa0174810:intron | 25.0% |
| !!! | TTAATACACACAAGTTTTGT+TGG | + | chr1_4:60586601-60586620 | None:intergenic | 25.0% |
| ! | TTAAGTACTTATGTCATATG+TGG | - | chr1_4:60586682-60586701 | Msa0174810:intron | 25.0% |
| ! | AAACTTAAAAAGCAAAAGGA+AGG | + | chr1_4:60587171-60587190 | None:intergenic | 25.0% |
| ! | ATAGAAAATATGCAATTGTG+TGG | - | chr1_4:60587521-60587540 | Msa0174810:CDS | 25.0% |
| !! | GCAAAAAACAGTAATTTTTC+AGG | + | chr1_4:60587633-60587652 | None:intergenic | 25.0% |
| ! | ATACTTTATGAAAATGGCAA+TGG | - | chr1_4:60587657-60587676 | Msa0174810:exon | 25.0% |
| !! | TCCGTTAGTGATTTTTAGAA+TGG | - | chr1_4:60585656-60585675 | Msa0174810:three_prime_UTR | 30.0% |
| ! | GCCATTCTAAAAATCACTAA+CGG | + | chr1_4:60585660-60585679 | None:intergenic | 30.0% |
| ! | TAAGGAAAATGGCTTTTGAA+TGG | - | chr1_4:60586188-60586207 | Msa0174810:intron | 30.0% |
| ! | TTGAATGGATGAATTTTCTC+TGG | - | chr1_4:60586203-60586222 | Msa0174810:intron | 30.0% |
| TCCTGTATTTATATGTTGTG+TGG | - | chr1_4:60586235-60586254 | Msa0174810:intron | 30.0% | |
| CCTGTATTTATATGTTGTGT+GGG | - | chr1_4:60586236-60586255 | Msa0174810:intron | 30.0% | |
| GATGAAAGGAGATAAATTGA+AGG | - | chr1_4:60586422-60586441 | Msa0174810:intron | 30.0% | |
| TTACCATCATCTTTGTATGT+CGG | - | chr1_4:60586522-60586541 | Msa0174810:CDS | 30.0% | |
| !! | TTTTTCTACTTTCGAGTCTA+AGG | - | chr1_4:60586637-60586656 | Msa0174810:intron | 30.0% |
| ! | TCTGATAACTGAATTTTCTC+AGG | - | chr1_4:60586713-60586732 | Msa0174810:intron | 30.0% |
| TCAGGTAAATGATGTAATAG+TGG | - | chr1_4:60586731-60586750 | Msa0174810:intron | 30.0% | |
| TACAATTATCATCCTTCGTT+TGG | - | chr1_4:60586875-60586894 | Msa0174810:intron | 30.0% | |
| !!! | CTTTTCTGAAACTTGTGAAT+AGG | - | chr1_4:60586916-60586935 | Msa0174810:intron | 30.0% |
| AATTAAATGCGGCATATTCA+TGG | + | chr1_4:60586947-60586966 | None:intergenic | 30.0% | |
| ! | TAATTTTGTGTTTGTGATCG+TGG | + | chr1_4:60586997-60587016 | None:intergenic | 30.0% |
| TTGTGACTTAGTTTATCCTA+TGG | - | chr1_4:60587476-60587495 | Msa0174810:CDS | 30.0% | |
| GCCTTGATACTTTATGAAAA+TGG | - | chr1_4:60587651-60587670 | Msa0174810:exon | 30.0% | |
| !! | GCCATTTTCATAAAGTATCA+AGG | + | chr1_4:60587655-60587674 | None:intergenic | 30.0% |
| !! | TCCGTTAGTGATTTTTAGAA+TGG | - | chr1_4:60585656-60585675 | Msa0174810:three_prime_UTR | 30.0% |
| ! | GCCATTCTAAAAATCACTAA+CGG | + | chr1_4:60585660-60585679 | None:intergenic | 30.0% |
| ! | TAAGGAAAATGGCTTTTGAA+TGG | - | chr1_4:60586188-60586207 | Msa0174810:intron | 30.0% |
| ! | TTGAATGGATGAATTTTCTC+TGG | - | chr1_4:60586203-60586222 | Msa0174810:intron | 30.0% |
| TCCTGTATTTATATGTTGTG+TGG | - | chr1_4:60586235-60586254 | Msa0174810:intron | 30.0% | |
| CCTGTATTTATATGTTGTGT+GGG | - | chr1_4:60586236-60586255 | Msa0174810:intron | 30.0% | |
| GATGAAAGGAGATAAATTGA+AGG | - | chr1_4:60586422-60586441 | Msa0174810:intron | 30.0% | |
| TTACCATCATCTTTGTATGT+CGG | - | chr1_4:60586522-60586541 | Msa0174810:CDS | 30.0% | |
| !! | TTTTTCTACTTTCGAGTCTA+AGG | - | chr1_4:60586637-60586656 | Msa0174810:intron | 30.0% |
| ! | TCTGATAACTGAATTTTCTC+AGG | - | chr1_4:60586713-60586732 | Msa0174810:intron | 30.0% |
| TCAGGTAAATGATGTAATAG+TGG | - | chr1_4:60586731-60586750 | Msa0174810:intron | 30.0% | |
| TACAATTATCATCCTTCGTT+TGG | - | chr1_4:60586875-60586894 | Msa0174810:intron | 30.0% | |
| !!! | CTTTTCTGAAACTTGTGAAT+AGG | - | chr1_4:60586916-60586935 | Msa0174810:intron | 30.0% |
| AATTAAATGCGGCATATTCA+TGG | + | chr1_4:60586947-60586966 | None:intergenic | 30.0% | |
| ! | TAATTTTGTGTTTGTGATCG+TGG | + | chr1_4:60586997-60587016 | None:intergenic | 30.0% |
| TTGTGACTTAGTTTATCCTA+TGG | - | chr1_4:60587476-60587495 | Msa0174810:CDS | 30.0% | |
| GCCTTGATACTTTATGAAAA+TGG | - | chr1_4:60587651-60587670 | Msa0174810:exon | 30.0% | |
| !! | GCCATTTTCATAAAGTATCA+AGG | + | chr1_4:60587655-60587674 | None:intergenic | 30.0% |
| TCGATTGCAACTAACATTAC+TGG | + | chr1_4:60585720-60585739 | None:intergenic | 35.0% | |
| CTCAAATCAGAATCCACAAT+TGG | + | chr1_4:60585989-60586008 | None:intergenic | 35.0% | |
| CCCACACAACATATAAATAC+AGG | + | chr1_4:60586239-60586258 | None:intergenic | 35.0% | |
| TTTATATGTTGTGTGGGACT+TGG | - | chr1_4:60586242-60586261 | Msa0174810:intron | 35.0% | |
| TCCACTTAAATTGCTTCAAC+TGG | - | chr1_4:60586488-60586507 | Msa0174810:CDS | 35.0% | |
| ACCAGTTGAAGCAATTTAAG+TGG | + | chr1_4:60586492-60586511 | None:intergenic | 35.0% | |
| TAACCGACATACAAAGATGA+TGG | + | chr1_4:60586528-60586547 | None:intergenic | 35.0% | |
| ! | TCGGTTAATTGTCATGCTTT+TGG | - | chr1_4:60586541-60586560 | Msa0174810:CDS | 35.0% |
| GGTAAATGATGTAATAGTGG+AGG | - | chr1_4:60586734-60586753 | Msa0174810:intron | 35.0% | |
| ! | AAATGATGTAATAGTGGAGG+TGG | - | chr1_4:60586737-60586756 | Msa0174810:intron | 35.0% |
| !! | AAAGTATCGTGCTTCAATCT+TGG | - | chr1_4:60586800-60586819 | Msa0174810:intron | 35.0% |
| TATGGGGCTATAAAAAGGTA+TGG | - | chr1_4:60586840-60586859 | Msa0174810:intron | 35.0% | |
| ! | AAAAAGGTATGGCTTCATTG+TGG | - | chr1_4:60586851-60586870 | Msa0174810:intron | 35.0% |
| TTACATATCACTCCAAACGA+AGG | + | chr1_4:60586890-60586909 | None:intergenic | 35.0% | |
| AGGTTAAAGATTTCAGTGGA+TGG | + | chr1_4:60587051-60587070 | None:intergenic | 35.0% | |
| ATCTTTAACCTGCAGAAGAT+AGG | - | chr1_4:60587060-60587079 | Msa0174810:intron | 35.0% | |
| CAAAAGGAAGGTTTGATTGT+TGG | + | chr1_4:60587159-60587178 | None:intergenic | 35.0% | |
| !! | ATAGATCAGTGCTTGGTTTT+TGG | + | chr1_4:60587385-60587404 | None:intergenic | 35.0% |
| ! | GCTATTTCACTTTAGCTGAA+AGG | + | chr1_4:60587440-60587459 | None:intergenic | 35.0% |
| AGTTTATCCTATGGCATGTT+TGG | - | chr1_4:60587485-60587504 | Msa0174810:CDS | 35.0% | |
| ACAAAGTAAAATAAGGCCTC+CGG | + | chr1_4:60587565-60587584 | None:intergenic | 35.0% | |
| TCGATTGCAACTAACATTAC+TGG | + | chr1_4:60585720-60585739 | None:intergenic | 35.0% | |
| CTCAAATCAGAATCCACAAT+TGG | + | chr1_4:60585989-60586008 | None:intergenic | 35.0% | |
| CCCACACAACATATAAATAC+AGG | + | chr1_4:60586239-60586258 | None:intergenic | 35.0% | |
| TTTATATGTTGTGTGGGACT+TGG | - | chr1_4:60586242-60586261 | Msa0174810:intron | 35.0% | |
| TCCACTTAAATTGCTTCAAC+TGG | - | chr1_4:60586488-60586507 | Msa0174810:CDS | 35.0% | |
| ACCAGTTGAAGCAATTTAAG+TGG | + | chr1_4:60586492-60586511 | None:intergenic | 35.0% | |
| TAACCGACATACAAAGATGA+TGG | + | chr1_4:60586528-60586547 | None:intergenic | 35.0% | |
| ! | TCGGTTAATTGTCATGCTTT+TGG | - | chr1_4:60586541-60586560 | Msa0174810:CDS | 35.0% |
| GGTAAATGATGTAATAGTGG+AGG | - | chr1_4:60586734-60586753 | Msa0174810:intron | 35.0% | |
| ! | AAATGATGTAATAGTGGAGG+TGG | - | chr1_4:60586737-60586756 | Msa0174810:intron | 35.0% |
| !! | AAAGTATCGTGCTTCAATCT+TGG | - | chr1_4:60586800-60586819 | Msa0174810:intron | 35.0% |
| TATGGGGCTATAAAAAGGTA+TGG | - | chr1_4:60586840-60586859 | Msa0174810:intron | 35.0% | |
| ! | AAAAAGGTATGGCTTCATTG+TGG | - | chr1_4:60586851-60586870 | Msa0174810:intron | 35.0% |
| TTACATATCACTCCAAACGA+AGG | + | chr1_4:60586890-60586909 | None:intergenic | 35.0% | |
| AGGTTAAAGATTTCAGTGGA+TGG | + | chr1_4:60587051-60587070 | None:intergenic | 35.0% | |
| ATCTTTAACCTGCAGAAGAT+AGG | - | chr1_4:60587060-60587079 | Msa0174810:intron | 35.0% | |
| CAAAAGGAAGGTTTGATTGT+TGG | + | chr1_4:60587159-60587178 | None:intergenic | 35.0% | |
| !! | ATAGATCAGTGCTTGGTTTT+TGG | + | chr1_4:60587385-60587404 | None:intergenic | 35.0% |
| ! | GCTATTTCACTTTAGCTGAA+AGG | + | chr1_4:60587440-60587459 | None:intergenic | 35.0% |
| AGTTTATCCTATGGCATGTT+TGG | - | chr1_4:60587485-60587504 | Msa0174810:CDS | 35.0% | |
| ACAAAGTAAAATAAGGCCTC+CGG | + | chr1_4:60587565-60587584 | None:intergenic | 35.0% | |
| TTGTGCTAATTAGTGTACGC+AGG | - | chr1_4:60585947-60585966 | Msa0174810:CDS | 40.0% | |
| ATCTTGGTTGTAGGTAGTCA+CGG | - | chr1_4:60586816-60586835 | Msa0174810:intron | 40.0% | |
| TTGTAGGTAGTCACGGTTAT+GGG | - | chr1_4:60586823-60586842 | Msa0174810:intron | 40.0% | |
| ACGGTTATGGGGCTATAAAA+AGG | - | chr1_4:60586835-60586854 | Msa0174810:intron | 40.0% | |
| ! | TTTTGTGTTTGTGATCGTGG+TGG | + | chr1_4:60586994-60587013 | None:intergenic | 40.0% |
| CTGCAGGTTAAAGATTTCAG+TGG | + | chr1_4:60587055-60587074 | None:intergenic | 40.0% | |
| TCGAGTGTAGTGAGTGAATT+AGG | + | chr1_4:60587276-60587295 | None:intergenic | 40.0% | |
| ! | ACTCGACTCTTTTAATCTGC+AGG | - | chr1_4:60587290-60587309 | Msa0174810:CDS | 40.0% |
| ! | CTCGACTCTTTTAATCTGCA+GGG | - | chr1_4:60587291-60587310 | Msa0174810:CDS | 40.0% |
| !! | AACCAAGCACTGATCTATAC+TGG | - | chr1_4:60587387-60587406 | Msa0174810:intron | 40.0% |
| CTACAAACCAAACATGCCAT+AGG | + | chr1_4:60587495-60587514 | None:intergenic | 40.0% | |
| CAAAGTAAAATAAGGCCTCC+GGG | + | chr1_4:60587564-60587583 | None:intergenic | 40.0% | |
| TTGTGCTAATTAGTGTACGC+AGG | - | chr1_4:60585947-60585966 | Msa0174810:CDS | 40.0% | |
| ATCTTGGTTGTAGGTAGTCA+CGG | - | chr1_4:60586816-60586835 | Msa0174810:intron | 40.0% | |
| TTGTAGGTAGTCACGGTTAT+GGG | - | chr1_4:60586823-60586842 | Msa0174810:intron | 40.0% | |
| ACGGTTATGGGGCTATAAAA+AGG | - | chr1_4:60586835-60586854 | Msa0174810:intron | 40.0% | |
| ! | TTTTGTGTTTGTGATCGTGG+TGG | + | chr1_4:60586994-60587013 | None:intergenic | 40.0% |
| CTGCAGGTTAAAGATTTCAG+TGG | + | chr1_4:60587055-60587074 | None:intergenic | 40.0% | |
| TCGAGTGTAGTGAGTGAATT+AGG | + | chr1_4:60587276-60587295 | None:intergenic | 40.0% | |
| ! | ACTCGACTCTTTTAATCTGC+AGG | - | chr1_4:60587290-60587309 | Msa0174810:CDS | 40.0% |
| ! | CTCGACTCTTTTAATCTGCA+GGG | - | chr1_4:60587291-60587310 | Msa0174810:CDS | 40.0% |
| !! | AACCAAGCACTGATCTATAC+TGG | - | chr1_4:60587387-60587406 | Msa0174810:intron | 40.0% |
| CTACAAACCAAACATGCCAT+AGG | + | chr1_4:60587495-60587514 | None:intergenic | 40.0% | |
| CAAAGTAAAATAAGGCCTCC+GGG | + | chr1_4:60587564-60587583 | None:intergenic | 40.0% | |
| !! | ACAGTGCATACGCTCTGAAA+TGG | - | chr1_4:60585751-60585770 | Msa0174810:three_prime_UTR | 45.0% |
| ! | TGCTGAGGTTTTGCCAATTG+TGG | - | chr1_4:60585973-60585992 | Msa0174810:CDS | 45.0% |
| GGGACTTGGAGCATACTATA+TGG | - | chr1_4:60586256-60586275 | Msa0174810:intron | 45.0% | |
| TAGCTGAATGCATCATGCTC+AGG | - | chr1_4:60586333-60586352 | Msa0174810:intron | 45.0% | |
| AGTTCCATACCCACATCCTT+AGG | - | chr1_4:60586574-60586593 | Msa0174810:CDS | 45.0% | |
| GTTCCATACCCACATCCTTA+GGG | - | chr1_4:60586575-60586594 | Msa0174810:CDS | 45.0% | |
| TTTGTTGGCCCTAAGGATGT+GGG | + | chr1_4:60586586-60586605 | None:intergenic | 45.0% | |
| ! | TTTTGTTGGCCCTAAGGATG+TGG | + | chr1_4:60586587-60586606 | None:intergenic | 45.0% |
| !!! | CACAAGTTTTGTTGGCCCTA+AGG | + | chr1_4:60586593-60586612 | None:intergenic | 45.0% |
| ! | TGATGTAATAGTGGAGGTGG+TGG | - | chr1_4:60586740-60586759 | Msa0174810:intron | 45.0% |
| CGTGCTTCAATCTTGGTTGT+AGG | - | chr1_4:60586807-60586826 | Msa0174810:intron | 45.0% | |
| GTTGTAGGTAGTCACGGTTA+TGG | - | chr1_4:60586822-60586841 | Msa0174810:intron | 45.0% | |
| TGTAGGTAGTCACGGTTATG+GGG | - | chr1_4:60586824-60586843 | Msa0174810:intron | 45.0% | |
| ! | GACTCTTTTAATCTGCAGGG+CGG | - | chr1_4:60587294-60587313 | Msa0174810:CDS | 45.0% |
| ! | TTAATCTGCAGGGCGGTTTT+AGG | - | chr1_4:60587301-60587320 | Msa0174810:CDS | 45.0% |
| TGCCAGTATAGATCAGTGCT+TGG | + | chr1_4:60587392-60587411 | None:intergenic | 45.0% | |
| !! | ACAGTGCATACGCTCTGAAA+TGG | - | chr1_4:60585751-60585770 | Msa0174810:three_prime_UTR | 45.0% |
| ! | TGCTGAGGTTTTGCCAATTG+TGG | - | chr1_4:60585973-60585992 | Msa0174810:CDS | 45.0% |
| GGGACTTGGAGCATACTATA+TGG | - | chr1_4:60586256-60586275 | Msa0174810:intron | 45.0% | |
| TAGCTGAATGCATCATGCTC+AGG | - | chr1_4:60586333-60586352 | Msa0174810:intron | 45.0% | |
| AGTTCCATACCCACATCCTT+AGG | - | chr1_4:60586574-60586593 | Msa0174810:CDS | 45.0% | |
| GTTCCATACCCACATCCTTA+GGG | - | chr1_4:60586575-60586594 | Msa0174810:CDS | 45.0% | |
| TTTGTTGGCCCTAAGGATGT+GGG | + | chr1_4:60586586-60586605 | None:intergenic | 45.0% | |
| ! | TTTTGTTGGCCCTAAGGATG+TGG | + | chr1_4:60586587-60586606 | None:intergenic | 45.0% |
| !!! | CACAAGTTTTGTTGGCCCTA+AGG | + | chr1_4:60586593-60586612 | None:intergenic | 45.0% |
| ! | TGATGTAATAGTGGAGGTGG+TGG | - | chr1_4:60586740-60586759 | Msa0174810:intron | 45.0% |
| CGTGCTTCAATCTTGGTTGT+AGG | - | chr1_4:60586807-60586826 | Msa0174810:intron | 45.0% | |
| GTTGTAGGTAGTCACGGTTA+TGG | - | chr1_4:60586822-60586841 | Msa0174810:intron | 45.0% | |
| TGTAGGTAGTCACGGTTATG+GGG | - | chr1_4:60586824-60586843 | Msa0174810:intron | 45.0% | |
| ! | GACTCTTTTAATCTGCAGGG+CGG | - | chr1_4:60587294-60587313 | Msa0174810:CDS | 45.0% |
| ! | TTAATCTGCAGGGCGGTTTT+AGG | - | chr1_4:60587301-60587320 | Msa0174810:CDS | 45.0% |
| TGCCAGTATAGATCAGTGCT+TGG | + | chr1_4:60587392-60587411 | None:intergenic | 45.0% | |
| CCAACAGAAGAAGTAGCGGT+GGG | + | chr1_4:60585840-60585859 | None:intergenic | 50.0% | |
| GAGGCCAACAGAAGAAGTAG+CGG | + | chr1_4:60585844-60585863 | None:intergenic | 50.0% | |
| GAATTATACCAGGACCAGCG+AGG | + | chr1_4:60585863-60585882 | None:intergenic | 50.0% | |
| !! | GTAATAGTGGAGGTGGTGGA+AGG | - | chr1_4:60586744-60586763 | Msa0174810:intron | 50.0% |
| TACTGCTGCCTATCTTCTGC+AGG | + | chr1_4:60587071-60587090 | None:intergenic | 50.0% | |
| ! | GATTGTTGTTGCCTCCTACC+CGG | - | chr1_4:60587543-60587562 | Msa0174810:CDS | 50.0% |
| GTAAAATAAGGCCTCCGGGT+AGG | + | chr1_4:60587560-60587579 | None:intergenic | 50.0% | |
| CCAACAGAAGAAGTAGCGGT+GGG | + | chr1_4:60585840-60585859 | None:intergenic | 50.0% | |
| GAGGCCAACAGAAGAAGTAG+CGG | + | chr1_4:60585844-60585863 | None:intergenic | 50.0% | |
| GAATTATACCAGGACCAGCG+AGG | + | chr1_4:60585863-60585882 | None:intergenic | 50.0% | |
| !! | GTAATAGTGGAGGTGGTGGA+AGG | - | chr1_4:60586744-60586763 | Msa0174810:intron | 50.0% |
| TACTGCTGCCTATCTTCTGC+AGG | + | chr1_4:60587071-60587090 | None:intergenic | 50.0% | |
| ! | GATTGTTGTTGCCTCCTACC+CGG | - | chr1_4:60587543-60587562 | Msa0174810:CDS | 50.0% |
| GTAAAATAAGGCCTCCGGGT+AGG | + | chr1_4:60587560-60587579 | None:intergenic | 50.0% | |
| CCCACCGCTACTTCTTCTGT+TGG | - | chr1_4:60585837-60585856 | Msa0174810:three_prime_UTR | 55.0% | |
| GCCAACAGAAGAAGTAGCGG+TGG | + | chr1_4:60585841-60585860 | None:intergenic | 55.0% | |
| ! | ACTTCTTCTGTTGGCCTCGC+TGG | - | chr1_4:60585846-60585865 | Msa0174810:three_prime_UTR | 55.0% |
| TGGCCCTAAGGATGTGGGTA+TGG | + | chr1_4:60586581-60586600 | None:intergenic | 55.0% | |
| AAATAAGGCCTCCGGGTAGG+AGG | + | chr1_4:60587557-60587576 | None:intergenic | 55.0% | |
| CCCACCGCTACTTCTTCTGT+TGG | - | chr1_4:60585837-60585856 | Msa0174810:three_prime_UTR | 55.0% | |
| GCCAACAGAAGAAGTAGCGG+TGG | + | chr1_4:60585841-60585860 | None:intergenic | 55.0% | |
| ! | ACTTCTTCTGTTGGCCTCGC+TGG | - | chr1_4:60585846-60585865 | Msa0174810:three_prime_UTR | 55.0% |
| TGGCCCTAAGGATGTGGGTA+TGG | + | chr1_4:60586581-60586600 | None:intergenic | 55.0% | |
| AAATAAGGCCTCCGGGTAGG+AGG | + | chr1_4:60587557-60587576 | None:intergenic | 55.0% | |
| AGTGTACGCAGGAGCTGCTG+AGG | - | chr1_4:60585958-60585977 | Msa0174810:CDS | 60.0% | |
| TGTTGTTGCCTCCTACCCGG+AGG | - | chr1_4:60587546-60587565 | Msa0174810:CDS | 60.0% | |
| AGTGTACGCAGGAGCTGCTG+AGG | - | chr1_4:60585958-60585977 | Msa0174810:CDS | 60.0% | |
| TGTTGTTGCCTCCTACCCGG+AGG | - | chr1_4:60587546-60587565 | Msa0174810:CDS | 60.0% | |
| ! | TCTGTTGGCCTCGCTGGTCC+TGG | - | chr1_4:60585852-60585871 | Msa0174810:three_prime_UTR | 65.0% |
| ! | TCTGTTGGCCTCGCTGGTCC+TGG | - | chr1_4:60585852-60585871 | Msa0174810:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 60585613 | 60587720 | 60585613 | ID=Msa0174810;Name=Msa0174810 |
| chr1_4 | mRNA | 60585613 | 60587720 | 60585613 | ID=Msa0174810-mRNA-1;Parent=Msa0174810;Name=Msa0174810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=62|1|1|1|0.66|0.75|4|321|170 |
| chr1_4 | exon | 60585613 | 60586021 | 60585613 | ID=Msa0174810-mRNA-1:exon:19200;Parent=Msa0174810-mRNA-1 |
| chr1_4 | exon | 60586477 | 60586598 | 60586477 | ID=Msa0174810-mRNA-1:exon:19199;Parent=Msa0174810-mRNA-1 |
| chr1_4 | exon | 60587270 | 60587373 | 60587270 | ID=Msa0174810-mRNA-1:exon:19198;Parent=Msa0174810-mRNA-1 |
| chr1_4 | exon | 60587460 | 60587720 | 60587460 | ID=Msa0174810-mRNA-1:exon:19197;Parent=Msa0174810-mRNA-1 |
| chr1_4 | five_prime_UTR | 60587659 | 60587720 | 60587659 | ID=Msa0174810-mRNA-1:five_prime_utr;Parent=Msa0174810-mRNA-1 |
| chr1_4 | CDS | 60587460 | 60587658 | 60587460 | ID=Msa0174810-mRNA-1:cds;Parent=Msa0174810-mRNA-1 |
| chr1_4 | CDS | 60587270 | 60587373 | 60587270 | ID=Msa0174810-mRNA-1:cds;Parent=Msa0174810-mRNA-1 |
| chr1_4 | CDS | 60586477 | 60586598 | 60586477 | ID=Msa0174810-mRNA-1:cds;Parent=Msa0174810-mRNA-1 |
| chr1_4 | CDS | 60585934 | 60586021 | 60585934 | ID=Msa0174810-mRNA-1:cds;Parent=Msa0174810-mRNA-1 |
| chr1_4 | three_prime_UTR | 60585613 | 60585933 | 60585613 | ID=Msa0174810-mRNA-1:three_prime_utr;Parent=Msa0174810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
