Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130420 | XP_024640795.1 | 98.299 | 294 | 5 | 0 | 1 | 294 | 1 | 294 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130420 | sp|Q9LRN8|RK3B_ARATH | 66.975 | 324 | 77 | 4 | 1 | 294 | 1 | 324 | 1.82e-146 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130420 | A0A396JZB7 | 98.299 | 294 | 5 | 0 | 1 | 294 | 1 | 294 | 0.0 | 598 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036330 | Msa0130420 | 0.838997 | 2.061514e-57 | -8.615850e-47 |
| Msa0084250 | Msa0130420 | 0.917187 | 7.204807e-86 | -8.615850e-47 |
| Msa0130420 | Msa1078870 | 0.822063 | 2.894827e-53 | -8.615850e-47 |
| Msa0130420 | Msa1256840 | 0.814013 | 1.911851e-51 | -8.615850e-47 |
| Msa0130420 | Msa1311400 | 0.809551 | 1.789171e-50 | -8.615850e-47 |
| Msa0130420 | Msa1332250 | 0.834176 | 3.486712e-56 | -8.615850e-47 |
| Msa0130420 | Msa1426120 | 0.826947 | 2.051002e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130420 | MtrunA17_Chr1g0198561 | 98.299 | 294 | 5 | 0 | 1 | 294 | 1 | 294 | 0.0 | 598 |
| Msa0130420 | MtrunA17_Chr6g0450631 | 92.857 | 294 | 21 | 0 | 1 | 294 | 1 | 294 | 0.0 | 572 |
| Msa0130420 | MtrunA17_Chr2g0324401 | 94.340 | 106 | 6 | 0 | 189 | 294 | 1 | 106 | 1.49e-70 | 213 |
| Msa0130420 | MtrunA17_Chr3g0145851 | 41.063 | 207 | 116 | 6 | 49 | 251 | 58 | 262 | 4.97e-43 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130420 | AT3G17465.1 | 66.975 | 324 | 77 | 4 | 1 | 294 | 1 | 324 | 1.85e-147 | 417 |
| Msa0130420 | AT2G43030.1 | 38.835 | 206 | 122 | 4 | 49 | 251 | 57 | 261 | 4.72e-39 | 138 |
Find 114 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGGATGTGGATCCATTTA+TGG | 0.158517 | 1_3:-60597099 | Msa0130420:CDS |
| ACACCAGTTCTTTGTGAATT+TGG | 0.165812 | 1_3:+60599828 | None:intergenic |
| TGACTGCTCATTGGGATAAA+TGG | 0.166624 | 1_3:-60599785 | Msa0130420:CDS |
| CTCACTGTTCAGGTCTTTAA+AGG | 0.228704 | 1_3:-60597898 | Msa0130420:intron |
| CTTTAATCAGTAACCATAAA+TGG | 0.233502 | 1_3:+60597086 | None:intergenic |
| GAATTCCAATTTCTATCCTT+TGG | 0.239774 | 1_3:-60599755 | Msa0130420:CDS |
| AAACCTTTGGTTGCTGATCT+TGG | 0.318983 | 1_3:-60597119 | Msa0130420:CDS |
| AAGGTCAGTGCCAAATAATT+TGG | 0.321682 | 1_3:+60596618 | None:intergenic |
| CCAAGTCTACACTTATTTGC+AGG | 0.324588 | 1_3:+60596882 | None:intergenic |
| TCTACCCAAAGGATAGAAAT+TGG | 0.334271 | 1_3:+60599750 | None:intergenic |
| AACCTTTGGTTGCTGATCTT+GGG | 0.341776 | 1_3:-60597118 | Msa0130420:CDS |
| ACCCACATCAAATTTCTTGC+TGG | 0.343726 | 1_3:+60597805 | None:intergenic |
| GTTCAGATGTGGAGACTATA+AGG | 0.352256 | 1_3:-60599881 | Msa0130420:CDS |
| CATACTGCCCGGGAACAAAA+TGG | 0.352881 | 1_3:+60598946 | None:intergenic |
| CAGGGTGTAATGAAGAAGTA+TGG | 0.352968 | 1_3:-60598126 | Msa0130420:CDS |
| CTAGTTGTTATTTGTGACTT+AGG | 0.360466 | 1_3:-60596934 | Msa0130420:three_prime_UTR |
| CAAATTTATTATTTGCTTAG+TGG | 0.369592 | 1_3:-60596496 | Msa0130420:three_prime_UTR |
| GCCCTAAAATGACCCACTTC+AGG | 0.379527 | 1_3:+60599056 | None:intergenic |
| AGCACTATTTCTCACCGAAA+TGG | 0.380604 | 1_3:-60601097 | None:intergenic |
| TTATTGCTCTATACCCATTT+CGG | 0.384908 | 1_3:+60601083 | None:intergenic |
| GATGGACAAAAGGGTATAGT+AGG | 0.388477 | 1_3:+60601034 | None:intergenic |
| TCATCTGAATCTTCATCTTC+CGG | 0.389387 | 1_3:+60597146 | None:intergenic |
| AATGAACCCAAAACCCTAGA+TGG | 0.393729 | 1_3:+60601016 | None:intergenic |
| TTCAGATGATATGAAACCTT+TGG | 0.395479 | 1_3:-60597132 | Msa0130420:CDS |
| TTGTTATTTGTGACTTAGGA+TGG | 0.399290 | 1_3:-60596930 | Msa0130420:three_prime_UTR |
| AATTCCAATTTCTATCCTTT+GGG | 0.400773 | 1_3:-60599754 | Msa0130420:CDS |
| ATGAAGAAGTATGGATTTCA+TGG | 0.403214 | 1_3:-60598117 | Msa0130420:CDS |
| GACTGCTCATTGGGATAAAT+GGG | 0.404613 | 1_3:-60599784 | Msa0130420:CDS |
| TGTTATTTGTGACTTAGGAT+GGG | 0.406077 | 1_3:-60596929 | Msa0130420:three_prime_UTR |
| GGTTGCTGATCTTGGGGATG+TGG | 0.407346 | 1_3:-60597111 | Msa0130420:CDS |
| GAACAATAGCCTTCCTTCTC+AGG | 0.410835 | 1_3:+60599699 | None:intergenic |
| TAAAGAGATAGTTCCACAAA+TGG | 0.411274 | 1_3:-60597068 | Msa0130420:three_prime_UTR |
| TAGAAAGATGCCAGGGAGAA+TGG | 0.416986 | 1_3:-60597875 | Msa0130420:CDS |
| TGCTTCCCACCCATTCTCCC+TGG | 0.421120 | 1_3:+60597865 | None:intergenic |
| ACAAAGTTCCCTGTAGCTCC+TGG | 0.431609 | 1_3:+60597236 | None:intergenic |
| AGGAATACTTGGTCCTTGTA+AGG | 0.431878 | 1_3:-60598043 | Msa0130420:intron |
| GATTGGTTGTGGACAGAAGA+AGG | 0.441589 | 1_3:-60599096 | Msa0130420:CDS |
| ACACAGGTCCCAGGAGCTAC+AGG | 0.448282 | 1_3:-60597245 | Msa0130420:intron |
| CCTGCAAATAAGTGTAGACT+TGG | 0.448720 | 1_3:-60596882 | Msa0130420:three_prime_UTR |
| ACCTTTGGTTGCTGATCTTG+GGG | 0.448994 | 1_3:-60597117 | Msa0130420:CDS |
| CAAAACCCTAGATGGACAAA+AGG | 0.452437 | 1_3:+60601024 | None:intergenic |
| ATGTGGAATGACTGCTCATT+GGG | 0.453159 | 1_3:-60599793 | Msa0130420:CDS |
| CAAATAATAAATTTGAACCT+TGG | 0.455342 | 1_3:+60596504 | None:intergenic |
| GCACTATTTCTCACCGAAAT+GGG | 0.463174 | 1_3:-60601096 | None:intergenic |
| TCTTCCGGCACAAAGTAAGT+TGG | 0.469195 | 1_3:+60597161 | None:intergenic |
| AGATGACAACATTGTCTCTC+AGG | 0.475183 | 1_3:-60599730 | Msa0130420:CDS |
| ACACCAAATTCACAAAGAAC+TGG | 0.478282 | 1_3:-60599831 | Msa0130420:CDS |
| CTTCCGGCACAAAGTAAGTT+GGG | 0.483444 | 1_3:+60597162 | None:intergenic |
| AGAAAGATGCCAGGGAGAAT+GGG | 0.487342 | 1_3:-60597874 | Msa0130420:CDS |
| AGAAATTTGATGTGGGTGAA+AGG | 0.489286 | 1_3:-60597799 | Msa0130420:CDS |
| GGACTCCATCCAACCTTACA+AGG | 0.491579 | 1_3:+60598030 | None:intergenic |
| AAAGAGATAGTTCCACAAAT+GGG | 0.492226 | 1_3:-60597067 | Msa0130420:three_prime_UTR |
| CATAGAACCATGGGATCTAC+AGG | 0.492630 | 1_3:-60598063 | Msa0130420:CDS |
| ACAGGAATCACCAAAGGAAA+AGG | 0.499760 | 1_3:-60598915 | Msa0130420:CDS |
| AATGTGGAATGACTGCTCAT+TGG | 0.503569 | 1_3:-60599794 | Msa0130420:CDS |
| ACATTAAGTGATGTACCAAC+AGG | 0.507292 | 1_3:+60598972 | None:intergenic |
| GTTATTTGTGACTTAGGATG+GGG | 0.511689 | 1_3:-60596928 | Msa0130420:three_prime_UTR |
| TATGTGCTTTCGAATTCCCA+TGG | 0.513084 | 1_3:+60598082 | None:intergenic |
| TCTTGAAGCTTCCTCTTCAT+CGG | 0.518555 | 1_3:+60599023 | None:intergenic |
| AAAAGGGTATAGTAGGGTGT+TGG | 0.525900 | 1_3:+60601041 | None:intergenic |
| GAATTTGGTGTCATCACACT+AGG | 0.526237 | 1_3:+60599843 | None:intergenic |
| CTCAAGGAGTTCCGATGAAG+AGG | 0.527266 | 1_3:-60599034 | Msa0130420:CDS |
| TTTGATGTGGGTGAAAGGCC+AGG | 0.528326 | 1_3:-60597794 | Msa0130420:intron |
| AAAGGAAGTATAGATGTGTC+AGG | 0.528945 | 1_3:+60597185 | None:intergenic |
| GGAAGGCTATTGTTCTCTCC+AGG | 0.530451 | 1_3:-60599691 | Msa0130420:intron |
| ATGGGATCTACAGGAATACT+TGG | 0.533632 | 1_3:-60598054 | Msa0130420:CDS |
| AAATCGCGGCAGTGGTGCCA+CGG | 0.533868 | 1_3:+60599908 | None:intergenic |
| TGTGATGTCAACATACTGCC+CGG | 0.537181 | 1_3:+60598935 | None:intergenic |
| AATCGCGGCAGTGGTGCCAC+GGG | 0.543839 | 1_3:+60599909 | None:intergenic |
| GAGGATGCACTTCTTCCTGT+TGG | 0.552055 | 1_3:-60598987 | Msa0130420:CDS |
| TTTCCCAACTTACTTTGTGC+CGG | 0.552953 | 1_3:-60597165 | Msa0130420:CDS |
| TCATCTTCGCATCTCAACTC+AGG | 0.553734 | 1_3:-60600967 | Msa0130420:intron |
| CAAAGTTCCCTGTAGCTCCT+GGG | 0.553971 | 1_3:+60597237 | None:intergenic |
| CATGGAGGTTCAGCATCCCA+TGG | 0.557351 | 1_3:-60598099 | Msa0130420:CDS |
| ACACTTGACAAAGCCTGAAG+TGG | 0.560843 | 1_3:-60599069 | Msa0130420:CDS |
| TTTAAAGGTAGAAAGATGCC+AGG | 0.564006 | 1_3:-60597883 | Msa0130420:CDS |
| AAAACCCTAGATGGACAAAA+GGG | 0.565069 | 1_3:+60601025 | None:intergenic |
| TCAGGTCAAAACTCCTGAGA+AGG | 0.567631 | 1_3:-60599712 | Msa0130420:CDS |
| ATGTGCTTTCGAATTCCCAT+GGG | 0.571228 | 1_3:+60598083 | None:intergenic |
| AAGTATTCCTGTAGATCCCA+TGG | 0.577273 | 1_3:+60598056 | None:intergenic |
| AACTAGAACTTATCGAGTGA+AGG | 0.580719 | 1_3:+60596951 | None:intergenic |
| TCAAGAGTTTCGAGTGACAG+AGG | 0.581725 | 1_3:-60599006 | Msa0130420:CDS |
| GTGTGCACAACACAGGTCCC+AGG | 0.582644 | 1_3:-60597254 | Msa0130420:intron |
| TCGAAAGCACATAGAACCAT+GGG | 0.582779 | 1_3:-60598072 | Msa0130420:CDS |
| ATGGAGGTTCAGCATCCCAT+GGG | 0.591854 | 1_3:-60598098 | Msa0130420:CDS |
| GGGCAGTATGTTGACATCAC+AGG | 0.594209 | 1_3:-60598933 | Msa0130420:CDS |
| TTGTGGGTAATAGATTTCCA+AGG | 0.597295 | 1_3:-60596521 | Msa0130420:three_prime_UTR |
| AAGATGCCAGGGAGAATGGG+TGG | 0.599236 | 1_3:-60597871 | Msa0130420:CDS |
| ATGGACAAAAGGGTATAGTA+GGG | 0.604099 | 1_3:+60601035 | None:intergenic |
| GGCACAAAGTAAGTTGGGAA+AGG | 0.607369 | 1_3:+60597167 | None:intergenic |
| AAAATTCAAATAACAGAACA+TGG | 0.608055 | 1_3:+60597017 | None:intergenic |
| ACCTCTTGAAAACGCCAGCA+TGG | 0.609546 | 1_3:+60599956 | None:intergenic |
| CACTTGACAAAGCCTGAAGT+GGG | 0.609676 | 1_3:-60599068 | Msa0130420:CDS |
| TTATTTGTGACTTAGGATGG+GGG | 0.612048 | 1_3:-60596927 | Msa0130420:three_prime_UTR |
| AGATGAAGATGAAGATAGTG+AGG | 0.612516 | 1_3:+60600984 | None:intergenic |
| TTCGAAAGCACATAGAACCA+TGG | 0.614239 | 1_3:-60598073 | Msa0130420:CDS |
| GTCAAAACTCCTGAGAAGGA+AGG | 0.621009 | 1_3:-60599708 | Msa0130420:CDS |
| ATCCAGCAAGAAATTTGATG+TGG | 0.622717 | 1_3:-60597807 | Msa0130420:CDS |
| TATTTGTGACTTAGGATGGG+GGG | 0.623659 | 1_3:-60596926 | Msa0130420:three_prime_UTR |
| CACAGGTCCCAGGAGCTACA+GGG | 0.625211 | 1_3:-60597244 | Msa0130420:intron |
| GTGATGTCAACATACTGCCC+GGG | 0.631463 | 1_3:+60598936 | None:intergenic |
| TAAGAGACTACACTGCTGCA+AGG | 0.631472 | 1_3:+60596599 | None:intergenic |
| AGATGCCAGGGAGAATGGGT+GGG | 0.644345 | 1_3:-60597870 | Msa0130420:CDS |
| GGTGTTATAGCTGTAAAATG+TGG | 0.647527 | 1_3:-60599810 | Msa0130420:CDS |
| TCCCCAAGATCAGCAACCAA+AGG | 0.647605 | 1_3:+60597116 | None:intergenic |
| GACATCACAGGAATCACCAA+AGG | 0.651363 | 1_3:-60598921 | Msa0130420:CDS |
| CAATGTTGTCATCTACCCAA+AGG | 0.657641 | 1_3:+60599739 | None:intergenic |
| TTAAAGGTAGAAAGATGCCA+GGG | 0.664670 | 1_3:-60597882 | Msa0130420:CDS |
| GATGAAGATGAAGATAGTGA+GGG | 0.666326 | 1_3:+60600985 | None:intergenic |
| TCGTCTTCGACAATTTCCCG+TGG | 0.673310 | 1_3:-60599925 | Msa0130420:CDS |
| GAAGATGAAGATAGTGAGGG+CGG | 0.674571 | 1_3:+60600988 | None:intergenic |
| TCCAGCAAGAAATTTGATGT+GGG | 0.677547 | 1_3:-60597806 | Msa0130420:CDS |
| AAGAAGTATGGATTTCATGG+AGG | 0.684184 | 1_3:-60598114 | Msa0130420:CDS |
| ACTGCTCATTGGGATAAATG+GGG | 0.750912 | 1_3:-60599783 | Msa0130420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATATAAATTGGTAATT+TGG | - | chr1_3:60596723-60596742 | Msa0130420:intron | 10.0% |
| !! | TCTTAATTTATATGAAAATT+AGG | - | chr1_3:60597013-60597032 | Msa0130420:three_prime_UTR | 10.0% |
| !! | TTTATTAAATTTGTATTTGT+AGG | - | chr1_3:60598886-60598905 | Msa0130420:intron | 10.0% |
| !! | TTCAAATATTCATAATCTTA+AGG | - | chr1_3:60596937-60596956 | Msa0130420:three_prime_UTR | 15.0% |
| !! | ATAATAAGTAGATAAACTTA+AGG | + | chr1_3:60597164-60597183 | None:intergenic | 15.0% |
| !! | ACTTTATGAATATTTCAAAA+AGG | + | chr1_3:60597250-60597269 | None:intergenic | 15.0% |
| !!! | TTTGAAATATTCATAAAGTT+AGG | - | chr1_3:60597251-60597270 | Msa0130420:intron | 15.0% |
| !! | TTGAAATATTCATAAAGTTA+GGG | - | chr1_3:60597252-60597271 | Msa0130420:intron | 15.0% |
| !!! | TTTGAAATATTCATAATCTT+AGG | - | chr1_3:60597450-60597469 | Msa0130420:intron | 15.0% |
| !! | TTGAAATATTCATAATCTTA+GGG | - | chr1_3:60597451-60597470 | Msa0130420:intron | 15.0% |
| !! | AATGTTTATAATGAATAATG+CGG | + | chr1_3:60598027-60598046 | None:intergenic | 15.0% |
| !! | GTTTATAATGAGTTATTAAA+TGG | - | chr1_3:60598334-60598353 | Msa0130420:intron | 15.0% |
| !! | GACAGAAATTATTATTTATA+TGG | + | chr1_3:60598728-60598747 | None:intergenic | 15.0% |
| !! | TTGATTACATTAGTTATATT+AGG | - | chr1_3:60598955-60598974 | Msa0130420:CDS | 15.0% |
| !! | TTGAACAAAACAATAAATAA+TGG | + | chr1_3:60599076-60599095 | None:intergenic | 15.0% |
| !! | CTACTAAATTAAATACAAAA+TGG | + | chr1_3:60600218-60600237 | None:intergenic | 15.0% |
| !! | TCTGCACAAATTATATAAAT+TGG | - | chr1_3:60596715-60596734 | Msa0130420:intron | 20.0% |
| !!! | TATAAATTGGTAATTTGGTT+AGG | - | chr1_3:60596728-60596747 | Msa0130420:intron | 20.0% |
| !!! | TTTAGTTTATCTAGTTAAAG+AGG | - | chr1_3:60596790-60596809 | Msa0130420:intron | 20.0% |
| !!! | AAAAAATCTAATGTTGCTTA+TGG | + | chr1_3:60596883-60596902 | None:intergenic | 20.0% |
| !! | ATAGTAGGTAGTTAAATATA+GGG | + | chr1_3:60597099-60597118 | None:intergenic | 20.0% |
| !! | ACAGTAAGTTGTTAAAATAA+GGG | + | chr1_3:60597132-60597151 | None:intergenic | 20.0% |
| !! | GAATATTTCAAAAAGATCAT+TGG | + | chr1_3:60597442-60597461 | None:intergenic | 20.0% |
| !! | ATATGAAAATGAAAGCAATT+TGG | - | chr1_3:60597536-60597555 | Msa0130420:intron | 20.0% |
| !!! | TCTTTTAATTCCACATATAT+AGG | - | chr1_3:60597582-60597601 | Msa0130420:intron | 20.0% |
| !! | TATATATAGAAGACATATCT+AGG | + | chr1_3:60598391-60598410 | None:intergenic | 20.0% |
| !! | ACAAAAAAACAATCATCTTA+GGG | + | chr1_3:60598926-60598945 | None:intergenic | 20.0% |
| !! | TACAAAAAAACAATCATCTT+AGG | + | chr1_3:60598927-60598946 | None:intergenic | 20.0% |
| !!! | AAGATGATTGTTTTTTTGTA+AGG | - | chr1_3:60598927-60598946 | Msa0130420:CDS | 20.0% |
| !!! | AGATGATTGTTTTTTTGTAA+GGG | - | chr1_3:60598928-60598947 | Msa0130420:CDS | 20.0% |
| !! | TTATTATATCATTAGGATTC+AGG | + | chr1_3:60599025-60599044 | None:intergenic | 20.0% |
| !! | TGTCAACTTATTATATCATT+AGG | + | chr1_3:60599032-60599051 | None:intergenic | 20.0% |
| !! | CAAATTCAATCATGTATTAT+AGG | - | chr1_3:60599050-60599069 | Msa0130420:CDS | 20.0% |
| !! | GCAGAAAAATAAACAATAAA+TGG | + | chr1_3:60599290-60599309 | None:intergenic | 20.0% |
| !!! | AAATTATATTTTCTGTTTCC+AGG | - | chr1_3:60599421-60599440 | Msa0130420:intron | 20.0% |
| !!! | AATTATATTTTCTGTTTCCA+GGG | - | chr1_3:60599422-60599441 | Msa0130420:intron | 20.0% |
| !! | AAAGAACAGTAAAAAATGTA+TGG | - | chr1_3:60599723-60599742 | Msa0130420:CDS | 20.0% |
| !! | AAGAACAGTAAAAAATGTAT+GGG | - | chr1_3:60599724-60599743 | Msa0130420:CDS | 20.0% |
| !!! | TTTTGATGTACAAAATTTCT+TGG | + | chr1_3:60600153-60600172 | None:intergenic | 20.0% |
| !! | AAAATTCAAATAACAGAACA+TGG | + | chr1_3:60600552-60600571 | None:intergenic | 20.0% |
| !!! | GTTATTTGAATTTTGAACAT+AGG | - | chr1_3:60600558-60600577 | Msa0130420:intron | 20.0% |
| !!! | CAAATAATTTGGCTTAAAAA+AGG | + | chr1_3:60600744-60600763 | None:intergenic | 20.0% |
| !!! | CTTTTTTAAGCCAAATTATT+TGG | - | chr1_3:60600742-60600761 | Msa0130420:intron | 20.0% |
| !!! | CAAATAATTTGGCTTAAAAA+AGG | + | chr1_3:60600744-60600763 | None:intergenic | 20.0% |
| !!! | CTTTTTTAAGCCAAATTATT+TGG | - | chr1_3:60600742-60600761 | Msa0130420:intron | 20.0% |
| !! | CAAATAATAAATTTGAACCT+TGG | + | chr1_3:60601065-60601084 | None:intergenic | 20.0% |
| !! | CAAATTTATTATTTGCTTAG+TGG | - | chr1_3:60601070-60601089 | Msa0130420:five_prime_UTR | 20.0% |
| !! | TTTTTGCTTCTTCATGATTT+TGG | - | chr1_3:60596683-60596702 | Msa0130420:intron | 25.0% |
| ! | AGTAAAATGTGATTGAATCA+AGG | - | chr1_3:60596909-60596928 | Msa0130420:three_prime_UTR | 25.0% |
| ! | GATAGTAGGTAGTTAAATAT+AGG | + | chr1_3:60597100-60597119 | None:intergenic | 25.0% |
| ! | CAGTAAGTTGTTAAAATAAG+GGG | + | chr1_3:60597131-60597150 | None:intergenic | 25.0% |
| ! | GACAGTAAGTTGTTAAAATA+AGG | + | chr1_3:60597133-60597152 | None:intergenic | 25.0% |
| !!! | TTAACAACTTACTGTCATTT+TGG | - | chr1_3:60597137-60597156 | Msa0130420:CDS | 25.0% |
| ! | TGACTACAATTTAAAAGAGA+CGG | - | chr1_3:60597221-60597240 | Msa0130420:CDS | 25.0% |
| ! | GGACTAAATTGTTAAAAAAG+TGG | + | chr1_3:60597374-60597393 | None:intergenic | 25.0% |
| ! | AATTCCAATTTCTATCCTTT+GGG | - | chr1_3:60597812-60597831 | Msa0130420:CDS | 25.0% |
| ! | ACAGTAAAAAAAGCAGAATA+TGG | - | chr1_3:60598278-60598297 | Msa0130420:intron | 25.0% |
| ! | TTGAATTTCACCAATCTAAT+CGG | + | chr1_3:60598313-60598332 | None:intergenic | 25.0% |
| !!! | ATGCTTTGTTTTAGTTAGAT+TGG | - | chr1_3:60598453-60598472 | Msa0130420:intron | 25.0% |
| !! | TATGAAAGTATGTAATACGA+GGG | + | chr1_3:60598698-60598717 | None:intergenic | 25.0% |
| !! | ATATGAAAGTATGTAATACG+AGG | + | chr1_3:60598699-60598718 | None:intergenic | 25.0% |
| ! | ATTTACTTCTAGACAATCAT+TGG | - | chr1_3:60599117-60599136 | Msa0130420:intron | 25.0% |
| !!! | GTTACACGTTTTTTTTTGAA+TGG | - | chr1_3:60599377-60599396 | Msa0130420:intron | 25.0% |
| ! | AACTAAGAATACTAATCTGA+AGG | + | chr1_3:60599560-60599579 | None:intergenic | 25.0% |
| ! | AACATGTAAAAACAATTACC+TGG | + | chr1_3:60599793-60599812 | None:intergenic | 25.0% |
| ! | CACACATTAATTTATGAACT+TGG | - | chr1_3:60599816-60599835 | Msa0130420:CDS | 25.0% |
| ! | TAGCTCAATTATTCATTAAC+TGG | - | chr1_3:60600235-60600254 | Msa0130420:intron | 25.0% |
| !! | GGCAAAAATATTTGAAATCT+CGG | - | chr1_3:60600256-60600275 | Msa0130420:intron | 25.0% |
| ! | CTTTAATCAGTAACCATAAA+TGG | + | chr1_3:60600483-60600502 | None:intergenic | 25.0% |
| !! | ATTTGAATTTTGAACATAGG+TGG | - | chr1_3:60600561-60600580 | Msa0130420:intron | 25.0% |
| !!! | TCTGATTGTGATTGTTTTAA+AGG | - | chr1_3:60600820-60600839 | Msa0130420:intron | 25.0% |
| !!! | ATTGTTTTAAAGGACTACTT+TGG | - | chr1_3:60600830-60600849 | Msa0130420:intron | 25.0% |
| !!! | TTGTTTTAAAGGACTACTTT+GGG | - | chr1_3:60600831-60600850 | Msa0130420:intron | 25.0% |
| !!! | TCTGATTGTGATTGTTTTAA+AGG | - | chr1_3:60600820-60600839 | Msa0130420:intron | 25.0% |
| TTATTGCTCTATACCCATTT+CGG | + | chr1_3:60596486-60596505 | None:intergenic | 30.0% | |
| ! | TATCTAGTTAAAGAGGCTTT+TGG | - | chr1_3:60596797-60596816 | Msa0130420:intron | 30.0% |
| ACTATGTTAAACTCTCAGAT+TGG | - | chr1_3:60597072-60597091 | Msa0130420:exon | 30.0% | |
| ATCCTTCAAAGAATATGCTA+GGG | + | chr1_3:60597196-60597215 | None:intergenic | 30.0% | |
| AATCCTTCAAAGAATATGCT+AGG | + | chr1_3:60597197-60597216 | None:intergenic | 30.0% | |
| AAATTAGTCCCAAACTTTGT+AGG | + | chr1_3:60597294-60597313 | None:intergenic | 30.0% | |
| ! | TACAAAGTTTGGGACTAATT+TGG | - | chr1_3:60597293-60597312 | Msa0130420:intron | 30.0% |
| AGTGAGTGGTTGAAATATAA+TGG | + | chr1_3:60597328-60597347 | None:intergenic | 30.0% | |
| TAAAGTACAAAATTCATCGC+TGG | + | chr1_3:60597502-60597521 | None:intergenic | 30.0% | |
| ACATCTGAACTAAAAAATCG+CGG | + | chr1_3:60597675-60597694 | None:intergenic | 30.0% | |
| GAATTCCAATTTCTATCCTT+TGG | - | chr1_3:60597811-60597830 | Msa0130420:CDS | 30.0% | |
| AATCCACATGAAACTCATTA+GGG | + | chr1_3:60597937-60597956 | None:intergenic | 30.0% | |
| TAATCCACATGAAACTCATT+AGG | + | chr1_3:60597938-60597957 | None:intergenic | 30.0% | |
| TTGTGTAGTTGATTGGATTT+CGG | + | chr1_3:60598056-60598075 | None:intergenic | 30.0% | |
| CGAAAATTTGTGTAGTTGAT+TGG | + | chr1_3:60598063-60598082 | None:intergenic | 30.0% | |
| GATTGCATAGATACAAATTC+TGG | - | chr1_3:60598181-60598200 | Msa0130420:intron | 30.0% | |
| ACTTGATCCTTAACATAGTA+TGG | - | chr1_3:60598224-60598243 | Msa0130420:intron | 30.0% | |
| ATTATCGCCATACTATGTTA+AGG | + | chr1_3:60598234-60598253 | None:intergenic | 30.0% | |
| !!! | TGTTTTAGTTAGATTGGTTG+TGG | - | chr1_3:60598459-60598478 | Msa0130420:intron | 30.0% |
| TACATGTTTATGCTTGTATG+TGG | - | chr1_3:60598771-60598790 | Msa0130420:intron | 30.0% | |
| CGTTTGTTTATTGACATGAT+TGG | - | chr1_3:60598844-60598863 | Msa0130420:intron | 30.0% | |
| TTGTCATTCATGTATGATTG+CGG | - | chr1_3:60599322-60599341 | Msa0130420:intron | 30.0% | |
| AAAAAAACGTGTAACTGACA+AGG | + | chr1_3:60599372-60599391 | None:intergenic | 30.0% | |
| ! | ATGAAGAAGTATGGATTTCA+TGG | - | chr1_3:60599449-60599468 | Msa0130420:intron | 30.0% |
| ATTTATGTTTCTCACTGTTC+AGG | - | chr1_3:60599658-60599677 | Msa0130420:intron | 30.0% | |
| !! | AATCACTTGATTTGTGTATG+AGG | + | chr1_3:60599871-60599890 | None:intergenic | 30.0% |
| GGATGAATCAATCATATTCA+TGG | - | chr1_3:60599922-60599941 | Msa0130420:CDS | 30.0% | |
| !! | GGGTAAGTAAAGTTTTAACA+TGG | + | chr1_3:60599958-60599977 | None:intergenic | 30.0% |
| TAATATCATCAAGAGAACGA+CGG | - | chr1_3:60600182-60600201 | Msa0130420:intron | 30.0% | |
| TTGAAATCTCGGATTTATCA+CGG | - | chr1_3:60600267-60600286 | Msa0130420:intron | 30.0% | |
| AATGCTTATTCCTCTTTGTA+TGG | - | chr1_3:60600290-60600309 | Msa0130420:intron | 30.0% | |
| TTCAGATGATATGAAACCTT+TGG | - | chr1_3:60600434-60600453 | Msa0130420:intron | 30.0% | |
| TAAAGAGATAGTTCCACAAA+TGG | - | chr1_3:60600498-60600517 | Msa0130420:intron | 30.0% | |
| AAAGAGATAGTTCCACAAAT+GGG | - | chr1_3:60600499-60600518 | Msa0130420:intron | 30.0% | |
| !! | CTAGTTGTTATTTGTGACTT+AGG | - | chr1_3:60600632-60600651 | Msa0130420:intron | 30.0% |
| !! | TTGTTATTTGTGACTTAGGA+TGG | - | chr1_3:60600636-60600655 | Msa0130420:intron | 30.0% |
| ! | TGTTATTTGTGACTTAGGAT+GGG | - | chr1_3:60600637-60600656 | Msa0130420:intron | 30.0% |
| GGCTTAAAAAAGGAAACAAT+TGG | + | chr1_3:60600734-60600753 | None:intergenic | 30.0% | |
| !!! | TGTTTTAAAGGACTACTTTG+GGG | - | chr1_3:60600832-60600851 | Msa0130420:intron | 30.0% |
| GGCTTAAAAAAGGAAACAAT+TGG | + | chr1_3:60600734-60600753 | None:intergenic | 30.0% | |
| !!! | TGTTTTAAAGGACTACTTTG+TGG | - | chr1_3:60600832-60600851 | Msa0130420:intron | 30.0% |
| !!! | GTTTTAAAGGACTACTTTGT+GGG | - | chr1_3:60601029-60601048 | Msa0130420:five_prime_UTR | 30.0% |
| ! | ATGGACAAAAGGGTATAGTA+GGG | + | chr1_3:60596534-60596553 | None:intergenic | 35.0% |
| ! | TATACCCTTTTGTCCATCTA+GGG | - | chr1_3:60596537-60596556 | Msa0130420:three_prime_UTR | 35.0% |
| AAAACCCTAGATGGACAAAA+GGG | + | chr1_3:60596544-60596563 | None:intergenic | 35.0% | |
| !! | TTTTGTCCATCTAGGGTTTT+GGG | - | chr1_3:60596544-60596563 | Msa0130420:three_prime_UTR | 35.0% |
| GATGAAGATGAAGATAGTGA+GGG | + | chr1_3:60596584-60596603 | None:intergenic | 35.0% | |
| AGATGAAGATGAAGATAGTG+AGG | + | chr1_3:60596585-60596604 | None:intergenic | 35.0% | |
| AGTTACAAGCAAATCAATCG+AGG | + | chr1_3:60596655-60596674 | None:intergenic | 35.0% | |
| !! | TGAGTTTGTTATCCTGCATT+TGG | - | chr1_3:60596762-60596781 | Msa0130420:intron | 35.0% |
| AACTAAACTACTCCAAATGC+AGG | + | chr1_3:60596777-60596796 | None:intergenic | 35.0% | |
| !! | AACATAGTCAAGGACTAGTT+TGG | + | chr1_3:60597060-60597079 | None:intergenic | 35.0% |
| CTGAGAGTTTAACATAGTCA+AGG | + | chr1_3:60597070-60597089 | None:intergenic | 35.0% | |
| ! | AAAGTTTGGGACTAATTTGG+TGG | - | chr1_3:60597296-60597315 | Msa0130420:intron | 35.0% |
| TCAACCACTCACTATCAATT+TGG | - | chr1_3:60597335-60597354 | Msa0130420:intron | 35.0% | |
| CATGGCAAAACCTATATATG+TGG | + | chr1_3:60597595-60597614 | None:intergenic | 35.0% | |
| ! | ATATATAGGTTTTGCCATGC+TGG | - | chr1_3:60597596-60597615 | Msa0130420:intron | 35.0% |
| !!! | GCGATTTTTTAGTTCAGATG+TGG | - | chr1_3:60597674-60597693 | Msa0130420:intron | 35.0% |
| ACACCAAATTCACAAAGAAC+TGG | - | chr1_3:60597735-60597754 | Msa0130420:intron | 35.0% | |
| ACACCAGTTCTTTGTGAATT+TGG | + | chr1_3:60597741-60597760 | None:intergenic | 35.0% | |
| ! | GGTGTTATAGCTGTAAAATG+TGG | - | chr1_3:60597756-60597775 | Msa0130420:intron | 35.0% |
| TCTACCCAAAGGATAGAAAT+TGG | + | chr1_3:60597819-60597838 | None:intergenic | 35.0% | |
| TATCCCTAATGAGTTTCATG+TGG | - | chr1_3:60597931-60597950 | Msa0130420:intron | 35.0% | |
| TGCGGAGTAACTAAACTAAA+AGG | + | chr1_3:60598009-60598028 | None:intergenic | 35.0% | |
| CATAGTATGGCGATAATATC+TGG | - | chr1_3:60598237-60598256 | Msa0130420:intron | 35.0% | |
| GCGATAATATCTGGTTAGAT+TGG | - | chr1_3:60598246-60598265 | Msa0130420:intron | 35.0% | |
| ACATTAAGTGATGTACCAAC+AGG | + | chr1_3:60598597-60598616 | None:intergenic | 35.0% | |
| TGCTATTATATAGACACGTG+CGG | + | chr1_3:60598799-60598818 | None:intergenic | 35.0% | |
| GAGTGGCAACTTATTGTTAT+TGG | + | chr1_3:60598994-60599013 | None:intergenic | 35.0% | |
| ! | TTTTTGAATGGCAGTTACAC+AGG | - | chr1_3:60599389-60599408 | Msa0130420:intron | 35.0% |
| ! | AAGAAGTATGGATTTCATGG+AGG | - | chr1_3:60599452-60599471 | Msa0130420:intron | 35.0% |
| TTTAAAGGTAGAAAGATGCC+AGG | - | chr1_3:60599683-60599702 | Msa0130420:intron | 35.0% | |
| TTAAAGGTAGAAAGATGCCA+GGG | - | chr1_3:60599684-60599703 | Msa0130420:intron | 35.0% | |
| ATCCAGCAAGAAATTTGATG+TGG | - | chr1_3:60599759-60599778 | Msa0130420:CDS | 35.0% | |
| TCCAGCAAGAAATTTGATGT+GGG | - | chr1_3:60599760-60599779 | Msa0130420:CDS | 35.0% | |
| AGAAATTTGATGTGGGTGAA+AGG | - | chr1_3:60599767-60599786 | Msa0130420:CDS | 35.0% | |
| ATTTATGAACTTGGAGCTCT+AGG | - | chr1_3:60599825-60599844 | Msa0130420:CDS | 35.0% | |
| TTTATGAACTTGGAGCTCTA+GGG | - | chr1_3:60599826-60599845 | Msa0130420:CDS | 35.0% | |
| !! | GGTTGATGAGTTTGAGTTAA+AGG | - | chr1_3:60599901-60599920 | Msa0130420:CDS | 35.0% |
| TAATCCGGAGTTCAATCAAA+GGG | + | chr1_3:60599978-60599997 | None:intergenic | 35.0% | |
| TCATTAATGACCAAGTGTCT+TGG | + | chr1_3:60600048-60600067 | None:intergenic | 35.0% | |
| ! | AAAGGAAGTATAGATGTGTC+AGG | + | chr1_3:60600384-60600403 | None:intergenic | 35.0% |
| TCATCTGAATCTTCATCTTC+CGG | + | chr1_3:60600423-60600442 | None:intergenic | 35.0% | |
| AACTAGAACTTATCGAGTGA+AGG | + | chr1_3:60600618-60600637 | None:intergenic | 35.0% | |
| GTTATTTGTGACTTAGGATG+GGG | - | chr1_3:60600638-60600657 | Msa0130420:intron | 35.0% | |
| TTATTTGTGACTTAGGATGG+GGG | - | chr1_3:60600639-60600658 | Msa0130420:intron | 35.0% | |
| AAGGTCAGTGCCAAATAATT+TGG | + | chr1_3:60600755-60600774 | None:intergenic | 35.0% | |
| !!! | GTTTTAAAGGACTACTTTGG+GGG | - | chr1_3:60600833-60600852 | Msa0130420:intron | 35.0% |
| !! | TTTTAAAGGACTACTTTGGG+GGG | - | chr1_3:60600834-60600853 | Msa0130420:intron | 35.0% |
| AAGGTCAGTGCCAAATAATT+TGG | + | chr1_3:60600755-60600774 | None:intergenic | 35.0% | |
| TTGTGGGTAATAGATTTCCA+AGG | - | chr1_3:60601045-60601064 | Msa0130420:five_prime_UTR | 35.0% | |
| ! | AAAAGGGTATAGTAGGGTGT+TGG | + | chr1_3:60596528-60596547 | None:intergenic | 40.0% |
| ! | GATGGACAAAAGGGTATAGT+AGG | + | chr1_3:60596535-60596554 | None:intergenic | 40.0% |
| ! | CTATACCCTTTTGTCCATCT+AGG | - | chr1_3:60596536-60596555 | Msa0130420:three_prime_UTR | 40.0% |
| CAAAACCCTAGATGGACAAA+AGG | + | chr1_3:60596545-60596564 | None:intergenic | 40.0% | |
| !! | CTTTTGTCCATCTAGGGTTT+TGG | - | chr1_3:60596543-60596562 | Msa0130420:three_prime_UTR | 40.0% |
| AATGAACCCAAAACCCTAGA+TGG | + | chr1_3:60596553-60596572 | None:intergenic | 40.0% | |
| TTCAACTAAGACCTTTGCAG+TGG | - | chr1_3:60596820-60596839 | Msa0130420:intron | 40.0% | |
| !! | ATAGTCAAGGACTAGTTTGG+TGG | + | chr1_3:60597057-60597076 | None:intergenic | 40.0% |
| ! | AAGGGGACTGAATTGATAGT+AGG | + | chr1_3:60597114-60597133 | None:intergenic | 40.0% |
| GTCCCTAGCATATTCTTTGA+AGG | - | chr1_3:60597191-60597210 | Msa0130420:CDS | 40.0% | |
| TTTGTAGGTCGCTCTCAAAT+AGG | + | chr1_3:60597279-60597298 | None:intergenic | 40.0% | |
| !! | GAGACCAAATTGATAGTGAG+TGG | + | chr1_3:60597342-60597361 | None:intergenic | 40.0% |
| !! | AATTCATCGCTGGCTTTGTA+GGG | + | chr1_3:60597492-60597511 | None:intergenic | 40.0% |
| !! | AAATTCATCGCTGGCTTTGT+AGG | + | chr1_3:60597493-60597512 | None:intergenic | 40.0% |
| GTTCAGATGTGGAGACTATA+AGG | - | chr1_3:60597685-60597704 | Msa0130420:intron | 40.0% | |
| !! | GAATTTGGTGTCATCACACT+AGG | + | chr1_3:60597726-60597745 | None:intergenic | 40.0% |
| AATGTGGAATGACTGCTCAT+TGG | - | chr1_3:60597772-60597791 | Msa0130420:intron | 40.0% | |
| ATGTGGAATGACTGCTCATT+GGG | - | chr1_3:60597773-60597792 | Msa0130420:intron | 40.0% | |
| TGACTGCTCATTGGGATAAA+TGG | - | chr1_3:60597781-60597800 | Msa0130420:intron | 40.0% | |
| GACTGCTCATTGGGATAAAT+GGG | - | chr1_3:60597782-60597801 | Msa0130420:intron | 40.0% | |
| ACTGCTCATTGGGATAAATG+GGG | - | chr1_3:60597783-60597802 | Msa0130420:intron | 40.0% | |
| CAATGTTGTCATCTACCCAA+AGG | + | chr1_3:60597830-60597849 | None:intergenic | 40.0% | |
| AGATGACAACATTGTCTCTC+AGG | - | chr1_3:60597836-60597855 | Msa0130420:CDS | 40.0% | |
| GTGACAGTATCCGATTAGAT+TGG | - | chr1_3:60598300-60598319 | Msa0130420:intron | 40.0% | |
| ATTCAGCTTAGAGTTACTCC+TGG | - | chr1_3:60598361-60598380 | Msa0130420:intron | 40.0% | |
| AAGACATATCTAGGTACTCC+AGG | + | chr1_3:60598382-60598401 | None:intergenic | 40.0% | |
| TCTTGAAGCTTCCTCTTCAT+CGG | + | chr1_3:60598546-60598565 | None:intergenic | 40.0% | |
| !! | AATGTTCGCCATTTTGTTCC+CGG | - | chr1_3:60598612-60598631 | Msa0130420:intron | 40.0% |
| ACAGGAATCACCAAAGGAAA+AGG | - | chr1_3:60598651-60598670 | Msa0130420:intron | 40.0% | |
| ! | CACCAAAGGAAAAGGTTTTC+AGG | - | chr1_3:60598659-60598678 | Msa0130420:intron | 40.0% |
| ! | CACCTGAAAACCTTTTCCTT+TGG | + | chr1_3:60598664-60598683 | None:intergenic | 40.0% |
| GCTATTATATAGACACGTGC+GGG | + | chr1_3:60598798-60598817 | None:intergenic | 40.0% | |
| !! | TAGCAGTTGAGTTGAATGCA+TGG | - | chr1_3:60598814-60598833 | Msa0130420:intron | 40.0% |
| AATCTTGCACGTACAAGTTC+AGG | - | chr1_3:60599167-60599186 | Msa0130420:intron | 40.0% | |
| TTCAAATTTCCAGAGAGGTC+AGG | + | chr1_3:60599232-60599251 | None:intergenic | 40.0% | |
| TGCGTTTCAAATTTCCAGAG+AGG | + | chr1_3:60599237-60599256 | None:intergenic | 40.0% | |
| ! | AACGCAAAATGTTGAGTTGC+AGG | - | chr1_3:60599251-60599270 | Msa0130420:intron | 40.0% |
| CATACTTCTTCATTACACCC+TGG | + | chr1_3:60599442-60599461 | None:intergenic | 40.0% | |
| CAGGGTGTAATGAAGAAGTA+TGG | - | chr1_3:60599440-60599459 | Msa0130420:intron | 40.0% | |
| ATGTGCTTTCGAATTCCCAT+GGG | + | chr1_3:60599486-60599505 | None:intergenic | 40.0% | |
| TATGTGCTTTCGAATTCCCA+TGG | + | chr1_3:60599487-60599506 | None:intergenic | 40.0% | |
| ! | TTCGAAAGCACATAGAACCA+TGG | - | chr1_3:60599493-60599512 | Msa0130420:intron | 40.0% |
| ! | TCGAAAGCACATAGAACCAT+GGG | - | chr1_3:60599494-60599513 | Msa0130420:intron | 40.0% |
| AAGTATTCCTGTAGATCCCA+TGG | + | chr1_3:60599513-60599532 | None:intergenic | 40.0% | |
| ATGGGATCTACAGGAATACT+TGG | - | chr1_3:60599512-60599531 | Msa0130420:intron | 40.0% | |
| AGGAATACTTGGTCCTTGTA+AGG | - | chr1_3:60599523-60599542 | Msa0130420:intron | 40.0% | |
| ATACTTGGTCCTTGTAAGGT+TGG | - | chr1_3:60599527-60599546 | Msa0130420:intron | 40.0% | |
| CTCACTGTTCAGGTCTTTAA+AGG | - | chr1_3:60599668-60599687 | Msa0130420:intron | 40.0% | |
| ACCCACATCAAATTTCTTGC+TGG | + | chr1_3:60599764-60599783 | None:intergenic | 40.0% | |
| ! | TTATGAACTTGGAGCTCTAG+GGG | - | chr1_3:60599827-60599846 | Msa0130420:CDS | 40.0% |
| CTTACCCTTTGATTGAACTC+CGG | - | chr1_3:60599971-60599990 | Msa0130420:intron | 40.0% | |
| GTAATCCGGAGTTCAATCAA+AGG | + | chr1_3:60599979-60599998 | None:intergenic | 40.0% | |
| TGATTGAACTCCGGATTACT+AGG | - | chr1_3:60599980-60599999 | Msa0130420:intron | 40.0% | |
| GATTGAACTCCGGATTACTA+GGG | - | chr1_3:60599981-60600000 | Msa0130420:intron | 40.0% | |
| ! | CCAAGTGTCTTGGTTGATAT+TGG | + | chr1_3:60600038-60600057 | None:intergenic | 40.0% |
| CCAATATCAACCAAGACACT+TGG | - | chr1_3:60600035-60600054 | Msa0130420:intron | 40.0% | |
| ACTGCAAATGTGCAAATGGT+GGG | + | chr1_3:60600096-60600115 | None:intergenic | 40.0% | |
| AACTGCAAATGTGCAAATGG+TGG | + | chr1_3:60600097-60600116 | None:intergenic | 40.0% | |
| CCATTTGCACATTTGCAGTT+CGG | - | chr1_3:60600097-60600116 | Msa0130420:intron | 40.0% | |
| TTTCCCAACTTACTTTGTGC+CGG | - | chr1_3:60600401-60600420 | Msa0130420:intron | 40.0% | |
| AAACCTTTGGTTGCTGATCT+TGG | - | chr1_3:60600447-60600466 | Msa0130420:intron | 40.0% | |
| AACCTTTGGTTGCTGATCTT+GGG | - | chr1_3:60600448-60600467 | Msa0130420:intron | 40.0% | |
| CTTGCACAAAAACCCATTTG+TGG | + | chr1_3:60600514-60600533 | None:intergenic | 40.0% | |
| !! | CACAAATGGGTTTTTGTGCA+AGG | - | chr1_3:60600512-60600531 | Msa0130420:intron | 40.0% |
| TATTTGTGACTTAGGATGGG+GGG | - | chr1_3:60600640-60600659 | Msa0130420:intron | 40.0% | |
| CCAAGTCTACACTTATTTGC+AGG | + | chr1_3:60600687-60600706 | None:intergenic | 40.0% | |
| CCTGCAAATAAGTGTAGACT+TGG | - | chr1_3:60600684-60600703 | Msa0130420:intron | 40.0% | |
| ! | TTTAAAGGACTACTTTGGGG+GGG | - | chr1_3:60600835-60600854 | Msa0130420:intron | 40.0% |
| CCAAGTCTACACTTATTTGC+AGG | + | chr1_3:60600687-60600706 | None:intergenic | 40.0% | |
| CCTGCAAATAAGTGTAGACT+TGG | - | chr1_3:60600684-60600703 | Msa0130420:intron | 40.0% | |
| GAAGATGAAGATAGTGAGGG+CGG | + | chr1_3:60596581-60596600 | None:intergenic | 45.0% | |
| TCATCTTCGCATCTCAACTC+AGG | - | chr1_3:60596599-60596618 | Msa0130420:three_prime_UTR | 45.0% | |
| GAGGCAGAATAGAAAGAGCA+TGG | + | chr1_3:60596636-60596655 | None:intergenic | 45.0% | |
| TGAGAGCGACCTACAAAGTT+TGG | - | chr1_3:60597282-60597301 | Msa0130420:intron | 45.0% | |
| GAGAGCGACCTACAAAGTTT+GGG | - | chr1_3:60597283-60597302 | Msa0130420:intron | 45.0% | |
| ! | TTCAGTCCTTCTGAGAGTCA+AGG | + | chr1_3:60597399-60597418 | None:intergenic | 45.0% |
| ! | TTTGTAGGGCGCTCTCAAAT+AGG | + | chr1_3:60597478-60597497 | None:intergenic | 45.0% |
| GAACTAAAAAATCGCGGCAG+TGG | + | chr1_3:60597669-60597688 | None:intergenic | 45.0% | |
| TCAGGTCAAAACTCCTGAGA+AGG | - | chr1_3:60597854-60597873 | Msa0130420:CDS | 45.0% | |
| GTCAAAACTCCTGAGAAGGA+AGG | - | chr1_3:60597858-60597877 | Msa0130420:CDS | 45.0% | |
| GAACAATAGCCTTCCTTCTC+AGG | + | chr1_3:60597870-60597889 | None:intergenic | 45.0% | |
| ! | GATTGGTTGTGGACAGAAGA+AGG | - | chr1_3:60598470-60598489 | Msa0130420:intron | 45.0% |
| ACACTTGACAAAGCCTGAAG+TGG | - | chr1_3:60598497-60598516 | Msa0130420:intron | 45.0% | |
| CACTTGACAAAGCCTGAAGT+GGG | - | chr1_3:60598498-60598517 | Msa0130420:intron | 45.0% | |
| !! | AGCCTGAAGTGGGTCATTTT+AGG | - | chr1_3:60598508-60598527 | Msa0130420:intron | 45.0% |
| !! | GCCTGAAGTGGGTCATTTTA+GGG | - | chr1_3:60598509-60598528 | Msa0130420:intron | 45.0% |
| ! | TCAAGAGTTTCGAGTGACAG+AGG | - | chr1_3:60598560-60598579 | Msa0130420:intron | 45.0% |
| !! | ATGTTCGCCATTTTGTTCCC+GGG | - | chr1_3:60598613-60598632 | Msa0130420:intron | 45.0% |
| TGTGATGTCAACATACTGCC+CGG | + | chr1_3:60598634-60598653 | None:intergenic | 45.0% | |
| GACATCACAGGAATCACCAA+AGG | - | chr1_3:60598645-60598664 | Msa0130420:intron | 45.0% | |
| GCACGTACAAGTTCAGGTAA+TGG | - | chr1_3:60599173-60599192 | Msa0130420:intron | 45.0% | |
| ! | TGTTGAGTTGCAGGCTTTCT+AGG | - | chr1_3:60599260-60599279 | Msa0130420:intron | 45.0% |
| ! | GTTGAGTTGCAGGCTTTCTA+GGG | - | chr1_3:60599261-60599280 | Msa0130420:intron | 45.0% |
| ! | TTGAGTTGCAGGCTTTCTAG+GGG | - | chr1_3:60599262-60599281 | Msa0130420:intron | 45.0% |
| CATAGAACCATGGGATCTAC+AGG | - | chr1_3:60599503-60599522 | Msa0130420:intron | 45.0% | |
| TTGGTCCTTGTAAGGTTGGA+TGG | - | chr1_3:60599531-60599550 | Msa0130420:intron | 45.0% | |
| TAGAAAGATGCCAGGGAGAA+TGG | - | chr1_3:60599691-60599710 | Msa0130420:intron | 45.0% | |
| AGAAAGATGCCAGGGAGAAT+GGG | - | chr1_3:60599692-60599711 | Msa0130420:CDS | 45.0% | |
| ATCAAGTGATTGAGCTCGAG+CGG | - | chr1_3:60599880-60599899 | Msa0130420:CDS | 45.0% | |
| ! | TTACTAGGGCTCCTTCCTTT+TGG | - | chr1_3:60599995-60600014 | Msa0130420:intron | 45.0% |
| ! | TACTAGGGCTCCTTCCTTTT+GGG | - | chr1_3:60599996-60600015 | Msa0130420:intron | 45.0% |
| !! | TGATATTGGCCTTGACTCTC+CGG | + | chr1_3:60600024-60600043 | None:intergenic | 45.0% |
| CCGAACTGCAAATGTGCAAA+TGG | + | chr1_3:60600100-60600119 | None:intergenic | 45.0% | |
| TATCATCAAGAGAACGACGG+TGG | - | chr1_3:60600185-60600204 | Msa0130420:intron | 45.0% | |
| GTTGTGCACACCATACAAAG+AGG | + | chr1_3:60600303-60600322 | None:intergenic | 45.0% | |
| TTGTATGGTGTGCACAACAC+AGG | - | chr1_3:60600305-60600324 | Msa0130420:intron | 45.0% | |
| ! | GGCACAAAGTAAGTTGGGAA+AGG | + | chr1_3:60600402-60600421 | None:intergenic | 45.0% |
| CTTCCGGCACAAAGTAAGTT+GGG | + | chr1_3:60600407-60600426 | None:intergenic | 45.0% | |
| TCTTCCGGCACAAAGTAAGT+TGG | + | chr1_3:60600408-60600427 | None:intergenic | 45.0% | |
| ACCTTTGGTTGCTGATCTTG+GGG | - | chr1_3:60600449-60600468 | Msa0130420:intron | 45.0% | |
| TGGGGATGTGGATCCATTTA+TGG | - | chr1_3:60600467-60600486 | Msa0130420:intron | 45.0% | |
| TAAGAGACTACACTGCTGCA+AGG | + | chr1_3:60600774-60600793 | None:intergenic | 45.0% | |
| ! | TTAAAGGACTACTTTGGGGG+GGG | - | chr1_3:60600836-60600855 | Msa0130420:intron | 45.0% |
| TAAGAGACTACACTGCTGCA+AGG | + | chr1_3:60600774-60600793 | None:intergenic | 45.0% | |
| TTTGCAGCATGCCACTGCAA+AGG | + | chr1_3:60596834-60596853 | None:intergenic | 50.0% | |
| !! | GAGAGCGCTCTACAAAGTCA+GGG | - | chr1_3:60596968-60596987 | Msa0130420:three_prime_UTR | 50.0% |
| ! | GTCCTTCTGAGAGTCAAGGA+GGG | + | chr1_3:60597395-60597414 | None:intergenic | 50.0% |
| ! | AGTCCTTCTGAGAGTCAAGG+AGG | + | chr1_3:60597396-60597415 | None:intergenic | 50.0% |
| ACCTCTTGAAAACGCCAGCA+TGG | + | chr1_3:60597613-60597632 | None:intergenic | 50.0% | |
| TCGTCTTCGACAATTTCCCG+TGG | - | chr1_3:60597641-60597660 | Msa0130420:intron | 50.0% | |
| GGAAGGCTATTGTTCTCTCC+AGG | - | chr1_3:60597875-60597894 | Msa0130420:CDS | 50.0% | |
| AGAATGAAGCAGAACGCACC+TGG | + | chr1_3:60597896-60597915 | None:intergenic | 50.0% | |
| GTGCGTTCTGCTTCATTCTC+AGG | - | chr1_3:60597897-60597916 | Msa0130420:intron | 50.0% | |
| GCCCTAAAATGACCCACTTC+AGG | + | chr1_3:60598513-60598532 | None:intergenic | 50.0% | |
| !!! | GTGGGTCATTTTAGGGCTCA+AGG | - | chr1_3:60598516-60598535 | Msa0130420:intron | 50.0% |
| CTCAAGGAGTTCCGATGAAG+AGG | - | chr1_3:60598532-60598551 | Msa0130420:intron | 50.0% | |
| GAGGATGCACTTCTTCCTGT+TGG | - | chr1_3:60598579-60598598 | Msa0130420:intron | 50.0% | |
| CATACTGCCCGGGAACAAAA+TGG | + | chr1_3:60598623-60598642 | None:intergenic | 50.0% | |
| GTGATGTCAACATACTGCCC+GGG | + | chr1_3:60598633-60598652 | None:intergenic | 50.0% | |
| GGGCAGTATGTTGACATCAC+AGG | - | chr1_3:60598633-60598652 | Msa0130420:intron | 50.0% | |
| ! | GGATTCAGGACTCTGAAGAG+TGG | + | chr1_3:60599011-60599030 | None:intergenic | 50.0% |
| CCAGAGAGGTCAGGTCAAAT+GGG | + | chr1_3:60599223-60599242 | None:intergenic | 50.0% | |
| TCCAGAGAGGTCAGGTCAAA+TGG | + | chr1_3:60599224-60599243 | None:intergenic | 50.0% | |
| TGAGTTGCAGGCTTTCTAGG+GGG | - | chr1_3:60599263-60599282 | Msa0130420:intron | 50.0% | |
| ATGGAGGTTCAGCATCCCAT+GGG | - | chr1_3:60599468-60599487 | Msa0130420:intron | 50.0% | |
| GGACTCCATCCAACCTTACA+AGG | + | chr1_3:60599539-60599558 | None:intergenic | 50.0% | |
| TTTGATGTGGGTGAAAGGCC+AGG | - | chr1_3:60599772-60599791 | Msa0130420:CDS | 50.0% | |
| AGGAAGGAGCCCTAGTAATC+CGG | + | chr1_3:60599993-60600012 | None:intergenic | 50.0% | |
| TTGACTCTCCGGTTCCCAAA+AGG | + | chr1_3:60600013-60600032 | None:intergenic | 50.0% | |
| !! | TTTTGGGAACCGGAGAGTCA+AGG | - | chr1_3:60600012-60600031 | Msa0130420:intron | 50.0% |
| CAAAGTTCCCTGTAGCTCCT+GGG | + | chr1_3:60600332-60600351 | None:intergenic | 50.0% | |
| ACAAAGTTCCCTGTAGCTCC+TGG | + | chr1_3:60600333-60600352 | None:intergenic | 50.0% | |
| TCCCCAAGATCAGCAACCAA+AGG | + | chr1_3:60600453-60600472 | None:intergenic | 50.0% | |
| GCAGTGGCATGCTGCAAATG+TGG | - | chr1_3:60596836-60596855 | Msa0130420:intron | 55.0% | |
| !! | CGAGAGCGCTCTACAAAGTC+AGG | - | chr1_3:60596967-60596986 | Msa0130420:three_prime_UTR | 55.0% |
| GTCCCTCCTTGACTCTCAGA+AGG | - | chr1_3:60597390-60597409 | Msa0130420:intron | 55.0% | |
| !! | GCCATGCTGGCGTTTTCAAG+AGG | - | chr1_3:60597609-60597628 | Msa0130420:intron | 55.0% |
| !! | GCTGGCGTTTTCAAGAGGTG+TGG | - | chr1_3:60597614-60597633 | Msa0130420:intron | 55.0% |
| CCCATTTGACCTGACCTCTC+TGG | - | chr1_3:60599220-60599239 | Msa0130420:intron | 55.0% | |
| ! | GAGTTGCAGGCTTTCTAGGG+GGG | - | chr1_3:60599264-60599283 | Msa0130420:intron | 55.0% |
| CATGGAGGTTCAGCATCCCA+TGG | - | chr1_3:60599467-60599486 | Msa0130420:intron | 55.0% | |
| AAGATGCCAGGGAGAATGGG+TGG | - | chr1_3:60599695-60599714 | Msa0130420:CDS | 55.0% | |
| AGATGCCAGGGAGAATGGGT+GGG | - | chr1_3:60599696-60599715 | Msa0130420:CDS | 55.0% | |
| !! | GGCTCCTTCCTTTTGGGAAC+CGG | - | chr1_3:60600002-60600021 | Msa0130420:intron | 55.0% |
| CTCTCCGGTTCCCAAAAGGA+AGG | + | chr1_3:60600009-60600028 | None:intergenic | 55.0% | |
| GGTTGCTGATCTTGGGGATG+TGG | - | chr1_3:60600455-60600474 | Msa0130420:intron | 55.0% | |
| GACTTAGGATGGGGGGAACA+TGG | - | chr1_3:60600647-60600666 | Msa0130420:intron | 55.0% | |
| ! | ACTACTTTGGGGGGGGAACA+TGG | - | chr1_3:60600843-60600862 | Msa0130420:intron | 55.0% |
| ! | AAATCGCGGCAGTGGTGCCA+CGG | + | chr1_3:60597661-60597680 | None:intergenic | 60.0% |
| TGCTTCCCACCCATTCTCCC+TGG | + | chr1_3:60599704-60599723 | None:intergenic | 60.0% | |
| GTGTGCACAACACAGGTCCC+AGG | - | chr1_3:60600312-60600331 | Msa0130420:intron | 60.0% | |
| ACACAGGTCCCAGGAGCTAC+AGG | - | chr1_3:60600321-60600340 | Msa0130420:intron | 60.0% | |
| CACAGGTCCCAGGAGCTACA+GGG | - | chr1_3:60600322-60600341 | Msa0130420:intron | 60.0% | |
| !! | AATCGCGGCAGTGGTGCCAC+GGG | + | chr1_3:60597660-60597679 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 60596477 | 60601111 | 60596477 | ID=Msa0130420;Name=Msa0130420 |
| chr1_3 | mRNA | 60596477 | 60601111 | 60596477 | ID=Msa0130420-mRNA-1;Parent=Msa0130420;Name=Msa0130420-mRNA-1;_AED=0.14;_eAED=0.14;_QI=152|1|1|1|0.66|0.42|7|415|294 |
| chr1_3 | exon | 60596477 | 60596640 | 60596477 | ID=Msa0130420-mRNA-1:exon:20017;Parent=Msa0130420-mRNA-1 |
| chr1_3 | exon | 60596837 | 60597261 | 60596837 | ID=Msa0130420-mRNA-1:exon:20016;Parent=Msa0130420-mRNA-1 |
| chr1_3 | exon | 60597795 | 60597908 | 60597795 | ID=Msa0130420-mRNA-1:exon:20015;Parent=Msa0130420-mRNA-1 |
| chr1_3 | exon | 60598044 | 60598145 | 60598044 | ID=Msa0130420-mRNA-1:exon:20014;Parent=Msa0130420-mRNA-1 |
| chr1_3 | exon | 60598908 | 60599117 | 60598908 | ID=Msa0130420-mRNA-1:exon:20013;Parent=Msa0130420-mRNA-1 |
| chr1_3 | exon | 60599692 | 60599984 | 60599692 | ID=Msa0130420-mRNA-1:exon:20012;Parent=Msa0130420-mRNA-1 |
| chr1_3 | exon | 60600968 | 60601111 | 60600968 | ID=Msa0130420-mRNA-1:exon:20011;Parent=Msa0130420-mRNA-1 |
| chr1_3 | five_prime_UTR | 60600968 | 60601111 | 60600968 | ID=Msa0130420-mRNA-1:five_prime_utr;Parent=Msa0130420-mRNA-1 |
| chr1_3 | five_prime_UTR | 60599977 | 60599984 | 60599977 | ID=Msa0130420-mRNA-1:five_prime_utr;Parent=Msa0130420-mRNA-1 |
| chr1_3 | CDS | 60599692 | 60599976 | 60599692 | ID=Msa0130420-mRNA-1:cds;Parent=Msa0130420-mRNA-1 |
| chr1_3 | CDS | 60598908 | 60599117 | 60598908 | ID=Msa0130420-mRNA-1:cds;Parent=Msa0130420-mRNA-1 |
| chr1_3 | CDS | 60598044 | 60598145 | 60598044 | ID=Msa0130420-mRNA-1:cds;Parent=Msa0130420-mRNA-1 |
| chr1_3 | CDS | 60597795 | 60597908 | 60597795 | ID=Msa0130420-mRNA-1:cds;Parent=Msa0130420-mRNA-1 |
| chr1_3 | CDS | 60597088 | 60597261 | 60597088 | ID=Msa0130420-mRNA-1:cds;Parent=Msa0130420-mRNA-1 |
| chr1_3 | three_prime_UTR | 60596837 | 60597087 | 60596837 | ID=Msa0130420-mRNA-1:three_prime_utr;Parent=Msa0130420-mRNA-1 |
| chr1_3 | three_prime_UTR | 60596477 | 60596640 | 60596477 | ID=Msa0130420-mRNA-1:three_prime_utr;Parent=Msa0130420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
