AlfalfaGEDB | Msa1426120

M. sativa cultivar zhongmu-4 / Msa1426120

KEGG: K02973
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00164.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426120	XP_003625582.1	100.000	142	0	0	1	142	1	142	5.13e-97	285

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426120	sp\|P49201\|RS232_ARATH	96.479	142	5	0	1	142	1	142	4.03e-97	278

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426120	B7FHD2	100.000	142	0	0	1	142	1	142	2.45e-97	285

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa1426120	0.864805	9.335316e-65	-8.615850e-47
Msa0002790	Msa1426120	0.864890	8.775755e-65	-8.615850e-47
Msa0011740	Msa1426120	0.805408	1.354609e-49	-8.615850e-47
Msa0032780	Msa1426120	0.851186	1.045370e-60	-8.615850e-47
Msa0036330	Msa1426120	0.809556	1.784719e-50	-8.615850e-47
Msa0040220	Msa1426120	0.816076	6.661346e-52	-8.615850e-47
Msa0042480	Msa1426120	0.823335	1.464263e-53	-8.615850e-47
Msa0044890	Msa1426120	0.843909	1.048367e-58	-8.615850e-47
Msa0049690	Msa1426120	0.815114	1.091054e-51	-8.615850e-47
Msa0068970	Msa1426120	0.841983	3.411814e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426120	MtrunA17_Chr7g0263691	100.000	142	0	0	1	142	1	142	4.72e-101	285
Msa1426120	MtrunA17_Chr1g0181621	93.662	142	9	0	1	142	1	142	1.56e-94	269
Msa1426120	MtrunA17_Chr7g0239631	52.113	71	31	2	40	109	13	81	4.35e-16	68.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426120	AT5G02960.1	96.479	142	5	0	1	142	1	142	4.09e-98	278
Msa1426120	AT3G09680.1	92.958	142	10	0	1	142	1	142	2.12e-93	266

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Find 61 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAGAAGAGAAGAT+AGG	0.458478	tig0025942:-66879	None:intergenic
AAAGATTACTAGTACTAAAA+CGG	0.482451	tig0025942:-66811	None:intergenic
AACCCTAGCACACTTACGAA+TGG	0.626506	tig0025942:-66338	None:intergenic
AACTAATTCTCGATCACCAT+GGG	0.484292	tig0025942:+65496	Msa1426120:exon
AAGAACAATTCCCTTAGCAT+GGG	0.533822	tig0025942:-66172	None:intergenic
AAGATAATTGAATAATCAAG+TGG	0.606771	tig0025942:-66946	None:intergenic
AAGCCTAGGTCTTGAAGTTG+TGG	0.517866	tig0025942:+66696	Msa1426120:exon
AAGTGGTACAGTTTATTCAC+CGG	0.560618	tig0025942:-66929	None:intergenic
AATCTCATCTTGGGAATGAA+TGG	0.457554	tig0025942:+66127	Msa1426120:CDS
AATTCAAGCAACCATCATTT+GGG	0.428558	tig0025942:-66399	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGAACACAAAAACATGAAAT+AGG	+	tig0025942:65670-65689	Msa1426120:intron	30.0%
AATTCAAGCAACCATCATTT+GGG	-	tig0025942:66402-66421	None:intergenic	30.0%
TAATTCAAGCAACCATCATT+TGG	-	tig0025942:66403-66422	None:intergenic	30.0%
ATGTATATCCTCCAGTAATA+TGG	+	tig0025942:66527-66546	Msa1426120:intron	30.0%
ATCATCAACAACCATATTAC+TGG	-	tig0025942:66541-66560	None:intergenic	30.0%
AAAAGAGAAGAAGAGAAGAT+AGG	-	tig0025942:66882-66901	None:intergenic	30.0%
GGAACACAAAAACATGAAAT+AGG	+	tig0025942:65670-65689	Msa1426120:intron	30.0%
AATTCAAGCAACCATCATTT+GGG	-	tig0025942:66402-66421	None:intergenic	30.0%
TAATTCAAGCAACCATCATT+TGG	-	tig0025942:66403-66422	None:intergenic	30.0%
ATGTATATCCTCCAGTAATA+TGG	+	tig0025942:66527-66546	Msa1426120:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0025942	gene	65434	66978	65434	ID=Msa1426120;Name=Msa1426120
tig0025942	mRNA	65434	66978	65434	ID=Msa1426120-mRNA-1;Parent=Msa1426120;Name=Msa1426120-mRNA-1;_AED=0.02;_eAED=0.02;_QI=80\|1\|1\|1\|1\|1\|4\|268\|142
tig0025942	exon	65434	65518	65434	ID=Msa1426120-mRNA-1:exon:4660;Parent=Msa1426120-mRNA-1
tig0025942	exon	66047	66202	66047	ID=Msa1426120-mRNA-1:exon:4661;Parent=Msa1426120-mRNA-1
tig0025942	exon	66309	66435	66309	ID=Msa1426120-mRNA-1:exon:4662;Parent=Msa1426120-mRNA-1
tig0025942	exon	66570	66978	66570	ID=Msa1426120-mRNA-1:exon:4663;Parent=Msa1426120-mRNA-1
tig0025942	five_prime_UTR	65434	65513	65434	ID=Msa1426120-mRNA-1:five_prime_utr;Parent=Msa1426120-mRNA-1
tig0025942	CDS	65514	65518	65514	ID=Msa1426120-mRNA-1:cds;Parent=Msa1426120-mRNA-1
tig0025942	CDS	66047	66202	66047	ID=Msa1426120-mRNA-1:cds;Parent=Msa1426120-mRNA-1
tig0025942	CDS	66309	66435	66309	ID=Msa1426120-mRNA-1:cds;Parent=Msa1426120-mRNA-1
tig0025942	CDS	66570	66710	66570	ID=Msa1426120-mRNA-1:cds;Parent=Msa1426120-mRNA-1
tig0025942	three_prime_UTR	66711	66978	66711	ID=Msa1426120-mRNA-1:three_prime_utr;Parent=Msa1426120-mRNA-1

Gene Sequence

>Msa1426120

ATGGGGAAGACAAGAGGAATGGGAGCTGCTCGCAAGCTGAGGAGACTCCGTATCAAGCAAAGGTGGGCTGATAAGCAATTTAAGAAATCTCATCTTGGGAATGAATGGAAGAAACCCTTTTCTGGTTCATCCCATGCTAAGGGAATTGTTCTTGAAAAGATTGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCTAGGGTTCAATTAATCAAAAATGGGAAGAAGATTGCTGCCTTTGTCCCAAATGATGGTTGCTTGAATTACATTGAGGAGAATGATGAAGTCTTGATCGCTGGATTTGGACGTAAAGGTCATGCTGTTGGTGATATTCCTGGAGTCAGGTTCAAGGTCGTGAAGGTTTCTGGTGTCTCTCTCCTTGCTCTTTTCAAGGAGAAGAAGGAGAAGCCTAGGTCTTGA

Protein sequence

>Msa1426120

MGKTRGMGAARKLRRLRIKQRWADKQFKKSHLGNEWKKPFSGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*