AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146820 MtrunA17_Chr1g0156121 94.981 777 28 2 1 766 1 777 0.0 1496
Msa0146820 MtrunA17_Chr7g0215371 78.947 76 16 0 99 174 1 76 1.29e-32 121
Msa0146820 MtrunA17_Chr5g0416161 37.313 134 83 1 119 252 121 253 3.08e-17 86.3
Msa0146820 MtrunA17_Chr4g0060381 35.714 140 84 2 117 252 100 237 1.77e-16 83.6
Msa0146820 MtrunA17_Chr3g0126901 36.047 172 66 6 117 254 112 273 3.32e-15 79.0
Msa0146820 MtrunA17_Chr1g0203711 35.374 147 74 5 115 253 113 246 1.32e-14 77.0
Msa0146820 MtrunA17_Chr4g0025441 32.121 165 82 4 117 255 96 256 2.40e-14 76.3
Msa0146820 MtrunA17_Chr8g0346021 59.649 57 23 0 119 175 129 185 3.48e-14 76.3
Msa0146820 MtrunA17_Chr6g0472551 33.333 156 88 7 100 253 106 247 8.02e-13 71.6
Msa0146820 MtrunA17_Chr8g0340761 49.254 67 34 0 119 185 128 194 1.64e-12 70.1
Msa0146820 MtrunA17_Chr1g0166431 32.704 159 85 5 13 169 31 169 1.93e-12 70.1
Msa0146820 MtrunA17_Chr7g0273861 50.769 65 32 0 117 181 125 189 4.68e-12 68.9
Msa0146820 MtrunA17_Chr1g0204901 45.833 72 38 1 117 188 136 206 5.52e-12 68.9
Msa0146820 MtrunA17_Chr8g0389781 52.542 59 28 0 119 177 128 186 8.07e-12 68.2
Msa0146820 MtrunA17_Chr1g0200161 28.834 163 90 3 117 253 141 303 8.95e-12 68.2
Msa0146820 MtrunA17_Chr4g0020671 43.210 81 44 1 110 190 94 172 1.63e-11 67.4
Msa0146820 MtrunA17_Chr1g0146931 56.364 55 24 0 114 168 119 173 2.15e-11 67.0
Msa0146820 MtrunA17_Chr1g0181581 28.302 159 92 2 117 253 116 274 3.85e-11 66.2
Msa0146820 MtrunA17_Chr3g0135851 57.692 52 22 0 117 168 91 142 7.61e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146820 AT1G19870.2 37.196 699 283 29 106 762 21 605 2.25e-95 309
Msa0146820 AT1G19870.1 37.196 699 283 29 106 762 204 788 1.40e-93 310
Msa0146820 AT1G18840.1 36.364 176 94 6 84 252 81 245 5.30e-22 101
Msa0146820 AT1G18840.3 36.364 176 94 6 84 252 81 245 5.30e-22 101
Msa0146820 AT1G18840.2 36.364 176 94 6 84 252 81 245 5.30e-22 101
Msa0146820 AT1G74690.1 40.288 139 78 3 117 252 113 249 7.00e-21 97.8
Msa0146820 AT1G14380.1 37.589 141 77 3 117 252 94 228 9.08e-21 97.8
Msa0146820 AT1G14380.3 37.589 141 77 3 117 252 94 228 9.08e-21 97.8
Msa0146820 AT1G14380.4 37.589 141 77 3 117 252 94 228 9.08e-21 97.8
Msa0146820 AT1G14380.6 37.589 141 77 3 117 252 94 228 1.11e-20 97.4
Msa0146820 AT1G14380.5 37.589 141 77 3 117 252 94 228 1.11e-20 97.4
Msa0146820 AT1G14380.2 37.589 141 77 3 117 252 94 228 1.11e-20 97.4
Msa0146820 AT1G14380.7 37.589 141 77 3 117 252 94 228 1.34e-20 97.1
Msa0146820 AT2G02790.1 29.231 195 129 2 66 252 48 241 6.39e-16 82.4
Msa0146820 AT2G02790.2 29.231 195 129 2 66 252 48 241 6.99e-16 82.0
Msa0146820 AT2G02790.3 29.231 195 129 2 66 252 48 241 6.99e-16 82.0
Msa0146820 AT5G03040.1 29.630 162 87 4 117 253 115 274 4.82e-15 79.0
Msa0146820 AT5G03040.3 29.630 162 87 4 117 253 115 274 4.82e-15 79.0
Msa0146820 AT5G03040.2 29.630 162 87 4 117 253 115 274 4.82e-15 79.0
Msa0146820 AT3G49260.1 51.471 68 33 0 117 184 120 187 5.91e-15 78.6
Msa0146820 AT3G49260.4 51.471 68 33 0 117 184 120 187 5.91e-15 78.6
Msa0146820 AT3G49260.2 51.471 68 33 0 117 184 120 187 5.91e-15 78.6
Msa0146820 AT3G49260.3 51.471 68 33 0 117 184 120 187 6.04e-15 78.6
Msa0146820 AT4G14750.1 31.818 220 116 6 1 207 1 199 8.44e-15 77.4
Msa0146820 AT3G52290.1 31.875 160 84 4 117 253 108 265 1.62e-14 77.0
Msa0146820 AT1G01110.2 55.072 69 30 1 119 187 123 190 2.26e-14 77.0
Msa0146820 AT4G14750.3 31.818 220 116 6 1 207 60 258 3.35e-14 76.3
Msa0146820 AT4G14750.2 31.818 220 116 6 1 207 60 258 3.66e-14 75.9
Msa0146820 AT4G00820.1 53.623 69 31 1 119 187 134 201 9.23e-14 75.1
Msa0146820 AT4G10640.1 35.329 167 77 6 19 182 27 165 2.72e-13 73.2
Msa0146820 AT3G51380.1 53.968 63 29 0 117 179 37 99 3.55e-13 66.6
Msa0146820 AT3G22190.3 30.435 161 88 3 119 255 90 250 9.28e-13 71.6
Msa0146820 AT3G22190.2 30.435 161 88 3 119 255 90 250 9.28e-13 71.6
Msa0146820 AT3G22190.4 30.435 161 88 3 119 255 90 250 9.28e-13 71.6
Msa0146820 AT3G22190.1 30.435 161 88 3 119 255 90 250 9.28e-13 71.6
Msa0146820 AT1G72670.1 30.097 206 96 7 89 253 57 255 1.15e-12 71.2
Msa0146820 AT5G13460.1 29.317 249 156 8 24 253 15 262 9.02e-12 68.6
Msa0146820 AT2G26180.1 57.692 52 22 0 117 168 84 135 2.58e-11 67.0
Msa0146820 AT3G09710.1 30.409 171 92 7 117 262 108 276 4.27e-11 66.2

Find 161 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTACTTCTTGTTTA+AGG 0.127404 1_4:-6563150 Msa0146820:CDS
TTGATTCCATTATTTCATTT+TGG 0.176997 1_4:+6560864 None:intergenic
GGCTTCAATTAGAGGATATT+TGG 0.187454 1_4:-6561922 Msa0146820:intron
GAAGGTGTTCCTTGAGATTC+AGG 0.211542 1_4:+6560152 None:intergenic
TCTTGATTCTGAGGAGAATT+AGG 0.232958 1_4:+6560821 None:intergenic
GTTTCGGTGACAATTGTTTC+TGG 0.235103 1_4:+6561996 None:intergenic
GATAGTACGGTACCACTTTC+AGG 0.245019 1_4:+6560518 None:intergenic
ACTTTCAGGATCAGCATTTC+TGG 0.256182 1_4:+6560532 None:intergenic
GACCACATCTTCGGCAAATA+AGG 0.286004 1_4:-6562144 Msa0146820:CDS
TATCCCTTCTACTAAATCTT+TGG 0.290554 1_4:+6560436 None:intergenic
TTCTTTCCAAAATGAAATAA+TGG 0.290941 1_4:-6560870 Msa0146820:CDS
CCCTTTGTGCCCTGCAGAGC+TGG 0.292599 1_4:+6559657 None:intergenic
TACTGTGATGTTGTTATTGT+TGG 0.294384 1_4:+6563280 None:intergenic
GATCAATTAGAAACTGTTAA+TGG 0.296217 1_4:-6560338 Msa0146820:CDS
CAGCAATAAGTTTGCTTCTC+AGG 0.298464 1_4:-6561379 Msa0146820:intron
GCTGAGTTCAAATTCAAATT+CGG 0.303504 1_4:-6560663 Msa0146820:CDS
ATTGCTACTACTATTATCTT+TGG 0.306041 1_4:+6559857 None:intergenic
GCTAATTCAAATCAAGATTC+AGG 0.330999 1_4:-6560035 Msa0146820:CDS
GGTTCTTGATCAGTGGGTTC+AGG 0.340125 1_4:+6559882 None:intergenic
GACTGTTCGGTTGTACAAAT+TGG 0.342687 1_4:+6561139 None:intergenic
GCGAATGCAAATCATGATTC+AGG 0.353964 1_4:-6559981 Msa0146820:CDS
CAAGCAGAATCACCTTTAGA+AGG 0.355744 1_4:+6561220 None:intergenic
AGGCTCAACAGCATGCTCTT+TGG 0.355751 1_4:+6560274 None:intergenic
ATCATCCAGGCTTCAATTAG+AGG 0.366920 1_4:-6561930 Msa0146820:CDS
ATGATTATCACAGCAGATTC+TGG 0.367431 1_4:+6561948 None:intergenic
GTCATTATCTCCAGCTCTGC+AGG 0.369580 1_4:-6559667 Msa0146820:CDS
CTGAGTTCAAATTCAAATTC+GGG 0.375719 1_4:-6560662 Msa0146820:CDS
TAATTTACCTATCTCTGATT+CGG 0.378191 1_4:-6560360 Msa0146820:CDS
CAAATCTTCTCAACAACATT+AGG 0.378376 1_4:+6562077 None:intergenic
TTGTGTAGCTTGCATGAAAC+GGG 0.383519 1_4:+6559824 None:intergenic
TGCACATCTGGACTTGATCT+TGG 0.387615 1_4:+6559768 None:intergenic
GGAAAGAGACGCAATTCATT+TGG 0.388346 1_4:-6559915 Msa0146820:CDS
GATGCCAAAGATTTAGTAGA+AGG 0.388914 1_4:-6560440 Msa0146820:CDS
GGAGAGATGGATGTTTGTTT+CGG 0.389207 1_4:-6561188 Msa0146820:CDS
AACACCTTCAAGTCAGGTTT+CGG 0.391099 1_4:-6560138 Msa0146820:CDS
AGAGGAATTTGCATTTATCT+TGG 0.400449 1_4:+6559791 None:intergenic
ATGTCAGTGTCATGCACATC+TGG 0.402507 1_4:+6559756 None:intergenic
GAGGGAAAGAAAATTACATT+TGG 0.405918 1_4:-6560740 Msa0146820:CDS
ACCTGGTGCAACTGGTAAGC+AGG 0.406901 1_4:-6559709 Msa0146820:CDS
TTTGGTTTCGTCCGACTGTT+CGG 0.411479 1_4:+6561126 None:intergenic
TTGGTAGGTTCTTGATCAGT+GGG 0.414639 1_4:+6559876 None:intergenic
TTTCCATTCAGCTGATCCTT+AGG 0.417372 1_4:+6559933 None:intergenic
TTCTCTAATAAATGATAACT+TGG 0.417692 1_4:-6560954 Msa0146820:CDS
AGATGCATGAGTGCTATCTT+TGG 0.419431 1_4:+6561108 None:intergenic
TTCGTGGGCACTTGGTTAGA+AGG 0.422143 1_4:-6561753 Msa0146820:CDS
CATTCCTTACCTGGTGCAAC+TGG 0.427428 1_4:-6559717 Msa0146820:CDS
TTCACCGAAACCTGACTTGA+AGG 0.429554 1_4:+6560134 None:intergenic
TCAAGGAACACCTTCAAGTC+AGG 0.430241 1_4:-6560144 Msa0146820:CDS
GGAATTGTCATATAGCTTCC+CGG 0.435431 1_4:+6560173 None:intergenic
GCATGCTCTTTGGAGTTCTC+AGG 0.444509 1_4:+6560284 None:intergenic
TCTTTCCCTCGGTCTCTAGT+TGG 0.446588 1_4:+6560753 None:intergenic
ACCTGACAGATCAGAGACTT+TGG 0.446642 1_4:-6560474 Msa0146820:CDS
ATCCACCTTACTCTCAGTTT+CGG 0.446953 1_4:+6561980 None:intergenic
ATTTGCATTTATCTTGGCCT+TGG 0.451725 1_4:+6559797 None:intergenic
AGAAAATTACATTTGGATCA+AGG 0.453684 1_4:-6560733 Msa0146820:CDS
CTTCTAAAGGTGATTCTGCT+TGG 0.454777 1_4:-6561219 Msa0146820:CDS
CCAGCTCTGCAGGGCACAAA+GGG 0.458401 1_4:-6559657 Msa0146820:CDS
AAGGTGATTCTGCTTGGAAA+TGG 0.460534 1_4:-6561213 Msa0146820:CDS
GAGAATAAAATCAACAAGAC+TGG 0.464101 1_4:-6560104 Msa0146820:CDS
CTCGGATGGTAGAGGTGAAT+CGG 0.465697 1_4:+6561042 None:intergenic
GAATCTTGATTTGAATTAGC+AGG 0.467650 1_4:+6560038 None:intergenic
AATTGATCCGAATCAGAGAT+AGG 0.472689 1_4:+6560353 None:intergenic
AGCTGCTGTTCGTGGGCACT+TGG 0.480789 1_4:-6561761 Msa0146820:CDS
ATTGTTGGAAAATGTGAGAA+AGG 0.480937 1_4:+6563295 None:intergenic
GTATTCTCAACAAGCTTCAC+CGG 0.482731 1_4:-6560192 Msa0146820:CDS
ATAACAACATCACAGTATTA+CGG 0.486696 1_4:-6563274 Msa0146820:five_prime_UTR
TCCAAAGTCTCTGATCTGTC+AGG 0.487160 1_4:+6560473 None:intergenic
CCTGAAAACAAGATTGATCA+TGG 0.488495 1_4:-6560407 Msa0146820:CDS
ATTTGCATTCGCAGGAGACT+TGG 0.490435 1_4:+6559992 None:intergenic
GTCAAATGTGATCCTTCTAA+AGG 0.490498 1_4:-6561232 Msa0146820:CDS
ATCTGCTGTGATAATCATCC+AGG 0.492717 1_4:-6561943 Msa0146820:CDS
ATTGTGTAGCTTGCATGAAA+CGG 0.493254 1_4:+6559823 None:intergenic
AGGTTAATCACATGCGGTGG+TGG 0.495955 1_4:-6563130 Msa0146820:CDS
CTTACCAGTTGCACCAGGTA+AGG 0.496866 1_4:+6559713 None:intergenic
TTTGGTAGGTTCTTGATCAG+TGG 0.497450 1_4:+6559875 None:intergenic
TTGCCTAAGGATCAGCTGAA+TGG 0.499267 1_4:-6559936 Msa0146820:CDS
CTTGGAAATGGTTGGAGAGA+TGG 0.499335 1_4:-6561201 Msa0146820:CDS
AACAACAGAGACCACATCTT+CGG 0.499944 1_4:-6562153 Msa0146820:CDS
CTACTACTATTATCTTTGGT+AGG 0.501445 1_4:+6559861 None:intergenic
GAGCATGTCGTGCTCGTACA+AGG 0.502104 1_4:+6561680 None:intergenic
GGCAGTCTTCTCTTCATCCT+CGG 0.508919 1_4:+6561024 None:intergenic
AACTGAAGAATAACTTGAGA+TGG 0.509161 1_4:+6561067 None:intergenic
TGTCACCGAAACTGAGAGTA+AGG 0.509505 1_4:-6561985 Msa0146820:CDS
TCATCACTTTCTTGATTCTG+AGG 0.511188 1_4:+6560812 None:intergenic
TAGCACTCATGCATCTCAAT+CGG 0.515881 1_4:-6561101 Msa0146820:CDS
GCCGAGTGGTTTGCTCGACC+AGG 0.516424 1_4:-6560636 Msa0146820:CDS
ATCAGCATTTCTGGAAGGAT+AGG 0.517006 1_4:+6560541 None:intergenic
AATATCCTCTAATTGAAGCC+TGG 0.517071 1_4:+6561925 None:intergenic
TCTTCATCCTCGGATGGTAG+AGG 0.519415 1_4:+6561034 None:intergenic
GAATCATGATTTGCATTCGC+AGG 0.523017 1_4:+6559984 None:intergenic
TTGTTGGAAAATGTGAGAAA+GGG 0.523624 1_4:+6563296 None:intergenic
ACAAACTGAGACTGTTCTGC+AGG 0.526275 1_4:-6560222 Msa0146820:CDS
AATAAATGATAACTTGGAAG+AGG 0.528936 1_4:-6560948 Msa0146820:CDS
ATTCTAATGATAAACGCGGT+TGG 0.530998 1_4:-6562226 Msa0146820:CDS
GGATCACATTTGACATGGAT+AGG 0.532828 1_4:+6561241 None:intergenic
AGAAATGCTGATCCTGAAAG+TGG 0.536855 1_4:-6560530 Msa0146820:CDS
GAGATAGGTAAATTAGAAGT+CGG 0.539880 1_4:+6560368 None:intergenic
TTGGTTAGAAGGCATGCTGT+TGG 0.542923 1_4:-6561742 Msa0146820:CDS
AGACGCAGGGTACTGTCTGC+TGG 0.543441 1_4:-6560071 Msa0146820:CDS
TGATTGAGCAGCAATAAATG+AGG 0.543692 1_4:+6560697 None:intergenic
TGATTCTGCTTGGAAATGGT+TGG 0.544910 1_4:-6561209 Msa0146820:CDS
TTGGAAAGAATCAATTTCAG+TGG 0.550366 1_4:+6560883 None:intergenic
GTGACTCAACCGATACATCC+TGG 0.551810 1_4:+6560618 None:intergenic
GAAAGAATCAATTTCAGTGG+AGG 0.553284 1_4:+6560886 None:intergenic
AGTTGAAGAAATAGATAGTA+CGG 0.556045 1_4:+6560505 None:intergenic
CTCCTTATTTGCCGAAGATG+TGG 0.559585 1_4:+6562142 None:intergenic
ATGACAATTCCTGAATCTCA+AGG 0.562140 1_4:-6560161 Msa0146820:CDS
TGAGTTGGTATCATAGTAAG+TGG 0.562597 1_4:+6561003 None:intergenic
GTCTTCTCTTCATCCTCGGA+TGG 0.563357 1_4:+6561028 None:intergenic
TTTGCTCGACCAGGATGTAT+CGG 0.563779 1_4:-6560627 Msa0146820:CDS
AGATCACCATGTTGTTTCTG+AGG 0.564237 1_4:-6563095 Msa0146820:intron
AAGTTGCAAGCTGCTGTTCG+TGG 0.564977 1_4:-6561769 Msa0146820:CDS
TCAGCATTTCTGGAAGGATA+GGG 0.569303 1_4:+6560542 None:intergenic
CCCTGCTTACCAGTTGCACC+AGG 0.570056 1_4:+6559708 None:intergenic
CTGCAGGGCACAAAGGGCAA+TGG 0.570514 1_4:-6559651 Msa0146820:CDS
GATTGAGCAGCAATAAATGA+GGG 0.573179 1_4:+6560698 None:intergenic
TCCAGCTCTGCAGGGCACAA+AGG 0.574271 1_4:-6559658 Msa0146820:CDS
ATGGAATCAAATGCAAGTGT+CGG 0.577817 1_4:-6560851 Msa0146820:CDS
TTAATCACATGCGGTGGTGG+TGG 0.579067 1_4:-6563127 Msa0146820:CDS
AAGAAGAGACATTCCTTACC+TGG 0.579855 1_4:-6559726 Msa0146820:CDS
TAGTAGAGAACAATTGCCTA+AGG 0.581315 1_4:-6559949 Msa0146820:CDS
AAATGTGAAGCACACTTCTG+TGG 0.582438 1_4:-6561412 Msa0146820:CDS
AATTTGTACAACCGAACAGT+CGG 0.584606 1_4:-6561137 Msa0146820:CDS
TCAGGATCAGCATTTCTGGA+AGG 0.588211 1_4:+6560536 None:intergenic
CCTGGTGCAACTGGTAAGCA+GGG 0.589383 1_4:-6559708 Msa0146820:CDS
CTCGGTCTCTAGTTGGTCTG+AGG 0.591676 1_4:+6560760 None:intergenic
TAGAAGGATCACATTTGACA+TGG 0.592428 1_4:+6561236 None:intergenic
GCTCAGAAGTCACATTCAGA+TGG 0.597896 1_4:-6561661 Msa0146820:CDS
AATCATGATTCAGGCTCAAG+AGG 0.598045 1_4:-6559972 Msa0146820:CDS
AGAGGCTCCTCCCGAAAAGA+CGG 0.601939 1_4:-6560930 Msa0146820:CDS
GATAATGACTGTTCGACACG+CGG 0.605175 1_4:+6559681 None:intergenic
CTGGATCAAGCAGTAGACGC+AGG 0.606218 1_4:-6560085 Msa0146820:CDS
TGTTTAAGGTTAATCACATG+CGG 0.607247 1_4:-6563136 Msa0146820:CDS
ATTATCACAGCAGATTCTGG+TGG 0.607983 1_4:+6561951 None:intergenic
ATGCCAAAGATTTAGTAGAA+GGG 0.611090 1_4:-6560439 Msa0146820:CDS
AGTTGCAAGCTGCTGTTCGT+GGG 0.611911 1_4:-6561768 Msa0146820:CDS
CTGAATCAACAACATTGCCA+CGG 0.613933 1_4:+6560312 None:intergenic
TGAATCAACAACATTGCCAC+GGG 0.613962 1_4:+6560313 None:intergenic
ATCTGGACTTGATCTTGGAG+AGG 0.618466 1_4:+6559773 None:intergenic
TTATTAGAGAAGATGAAGAG+AGG 0.625076 1_4:+6560966 None:intergenic
TGGTATCTCTGAGCAAACAT+CGG 0.629581 1_4:+6562016 None:intergenic
TCATTATCTCCAGCTCTGCA+GGG 0.630457 1_4:-6559666 Msa0146820:CDS
GAAACTGTTAATGGCTCCCG+TGG 0.632617 1_4:-6560329 Msa0146820:CDS
TATTCTCAACAAGCTTCACC+GGG 0.635415 1_4:-6560191 Msa0146820:CDS
GTTCAAATTCAAATTCGGGT+AGG 0.637397 1_4:-6560658 Msa0146820:CDS
GCAAGCTACACAATCTGCCA+AGG 0.638530 1_4:-6559814 Msa0146820:CDS
CGATTCACCTCTACCATCCG+AGG 0.641344 1_4:-6561041 Msa0146820:CDS
CTCAGACCAACTAGAGACCG+AGG 0.645334 1_4:-6560759 Msa0146820:CDS
GCTTGCTTGAAAGTGTGAGT+TGG 0.649171 1_4:+6560988 None:intergenic
TGGATCAAGCAGTAGACGCA+GGG 0.654626 1_4:-6560084 Msa0146820:CDS
TCAAATTCGGGTAGGCCGAG+TGG 0.655550 1_4:-6560650 Msa0146820:CDS
TCCTGGTCGAGCAAACCACT+CGG 0.660396 1_4:+6560635 None:intergenic
CACCGAAACTGAGAGTAAGG+TGG 0.667231 1_4:-6561982 Msa0146820:CDS
TTAAGGTTAATCACATGCGG+TGG 0.672478 1_4:-6563133 Msa0146820:CDS
TATCTCTGAGCAAACATCGG+AGG 0.674060 1_4:+6562019 None:intergenic
TCAGGCTCAAGAGTGTCTGT+CGG 0.675797 1_4:-6560017 Msa0146820:CDS
TCAGACCAACTAGAGACCGA+GGG 0.692845 1_4:-6560758 Msa0146820:CDS
GATTCACCTCAGAAACAACA+TGG 0.720891 1_4:+6563089 None:intergenic
TGTGTAGCTTGCATGAAACG+GGG 0.721075 1_4:+6559825 None:intergenic
CAAACATCGGAGGATAACTG+TGG 0.737595 1_4:+6562029 None:intergenic
AAGGATTCTAATGATAAACG+CGG 0.747406 1_4:-6562230 Msa0146820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTCTTTCTATTTT+TGG - chr1_4:6560080-6560099 Msa0146820:CDS 10.0%
!! TTCATAATTGAATACTTATA+AGG - chr1_4:6560122-6560141 Msa0146820:CDS 15.0%
!!! CTATTAAACGAATAAAATTT+TGG + chr1_4:6561417-6561436 None:intergenic 15.0%
!! ATCAAAGATCACAAAAAAAA+AGG + chr1_4:6560200-6560219 None:intergenic 20.0%
!! TTATGAATCAAAATCTTGTA+AGG - chr1_4:6561104-6561123 Msa0146820:CDS 20.0%
!! ACGAACAAAAGATTTATAAA+AGG + chr1_4:6561146-6561165 None:intergenic 20.0%
!!! TTTTATTCGTTTAATAGTTG+TGG - chr1_4:6561420-6561439 Msa0146820:CDS 20.0%
!!! TTATTTTTTTACTGTGGTTT+AGG - chr1_4:6561523-6561542 Msa0146820:intron 20.0%
!! ATTTAGTATGAATGAACAAA+CGG + chr1_4:6561670-6561689 None:intergenic 20.0%
!! TTCTCTAATAAATGATAACT+TGG - chr1_4:6562029-6562048 Msa0146820:CDS 20.0%
!! TTCTTTCCAAAATGAAATAA+TGG - chr1_4:6562113-6562132 Msa0146820:intron 20.0%
!!! TTGATTCCATTATTTCATTT+TGG + chr1_4:6562122-6562141 None:intergenic 20.0%
! GTAAGTAAGTTTAAAAACCA+CGG + chr1_4:6559668-6559687 None:intergenic 25.0%
! ATAACAACATCACAGTATTA+CGG - chr1_4:6559709-6559728 Msa0146820:CDS 25.0%
!! TGAAATCTACTTCTTGTTTA+AGG - chr1_4:6559833-6559852 Msa0146820:CDS 25.0%
! AATAAGAAAAGAAACGAAGT+TGG + chr1_4:6560011-6560030 None:intergenic 25.0%
! TAAAGAAGTAAAATCAAGCA+AGG + chr1_4:6560278-6560297 None:intergenic 25.0%
! TATATACATCTTTATGCCAA+TGG - chr1_4:6560431-6560450 Msa0146820:CDS 25.0%
! ATATACATCTTTATGCCAAT+GGG - chr1_4:6560432-6560451 Msa0146820:CDS 25.0%
! GATGTAAGTTGTACAATTTA+CGG - chr1_4:6560466-6560485 Msa0146820:CDS 25.0%
! TATCAACTAAGCACAAAAAA+CGG + chr1_4:6560492-6560511 None:intergenic 25.0%
!! TTTTTCTTTAATGATGTTCC+AGG - chr1_4:6560728-6560747 Msa0146820:CDS 25.0%
!! TTTTGTTCGTGTTTCTTTTT+AGG - chr1_4:6561156-6561175 Msa0146820:CDS 25.0%
! AAATGATGACTCAAAAACTA+CGG - chr1_4:6561348-6561367 Msa0146820:intron 25.0%
!!! GTCGTTTTATTTTTTTACTG+TGG - chr1_4:6561517-6561536 Msa0146820:intron 25.0%
! AATAAATGATAACTTGGAAG+AGG - chr1_4:6562035-6562054 Msa0146820:CDS 25.0%
!! AAATGTAATTTTCTTTCCCT+CGG + chr1_4:6562244-6562263 None:intergenic 25.0%
! AGAAAATTACATTTGGATCA+AGG - chr1_4:6562250-6562269 Msa0146820:intron 25.0%
! AGTTGAAGAAATAGATAGTA+CGG + chr1_4:6562481-6562500 None:intergenic 25.0%
! TAATTTACCTATCTCTGATT+CGG - chr1_4:6562623-6562642 Msa0146820:intron 25.0%
! GATCAATTAGAAACTGTTAA+TGG - chr1_4:6562645-6562664 Msa0146820:intron 25.0%
! ATTGCTACTACTATTATCTT+TGG + chr1_4:6563129-6563148 None:intergenic 25.0%
TTGTTGGAAAATGTGAGAAA+GGG + chr1_4:6559690-6559709 None:intergenic 30.0%
ATTGTTGGAAAATGTGAGAA+AGG + chr1_4:6559691-6559710 None:intergenic 30.0%
! TACTGTGATGTTGTTATTGT+TGG + chr1_4:6559706-6559725 None:intergenic 30.0%
GTGAACAAAAAACATAGCTA+TGG - chr1_4:6559810-6559829 Msa0146820:CDS 30.0%
! TGTTTAAGGTTAATCACATG+CGG - chr1_4:6559847-6559866 Msa0146820:CDS 30.0%
TTGTGAAAAACACTAAACCT+CGG + chr1_4:6559936-6559955 None:intergenic 30.0%
!! AATACTTATAAGGTGCTGTT+TGG - chr1_4:6560132-6560151 Msa0146820:CDS 30.0%
CTGTTTGGATAACATTGAAT+AGG - chr1_4:6560147-6560166 Msa0146820:CDS 30.0%
!! TGAAATTTTGATCGTGATTC+AGG - chr1_4:6560665-6560684 Msa0146820:CDS 30.0%
AAGGATTCTAATGATAAACG+CGG - chr1_4:6560753-6560772 Msa0146820:CDS 30.0%
GAGGATTGAAAACTAATACT+TGG + chr1_4:6560879-6560898 None:intergenic 30.0%
CAAATCTTCTCAACAACATT+AGG + chr1_4:6560909-6560928 None:intergenic 30.0%
! TTTGGTATGTTTCTTTTCTG+AGG - chr1_4:6561079-6561098 Msa0146820:intron 30.0%
!!! ACATGGATAGGTTTGTTTTT+TGG + chr1_4:6561733-6561752 None:intergenic 30.0%
AACTGAAGAATAACTTGAGA+TGG + chr1_4:6561919-6561938 None:intergenic 30.0%
TTATTAGAGAAGATGAAGAG+AGG + chr1_4:6562020-6562039 None:intergenic 30.0%
! ATCATATGTAACCGTCTTTT+CGG + chr1_4:6562067-6562086 None:intergenic 30.0%
TTGGAAAGAATCAATTTCAG+TGG + chr1_4:6562103-6562122 None:intergenic 30.0%
GAGGGAAAGAAAATTACATT+TGG - chr1_4:6562243-6562262 Msa0146820:intron 30.0%
GCTGAGTTCAAATTCAAATT+CGG - chr1_4:6562320-6562339 Msa0146820:intron 30.0%
CTGAGTTCAAATTCAAATTC+GGG - chr1_4:6562321-6562340 Msa0146820:intron 30.0%
ATGCCAAAGATTTAGTAGAA+GGG - chr1_4:6562544-6562563 Msa0146820:intron 30.0%
TATCCCTTCTACTAAATCTT+TGG + chr1_4:6562550-6562569 None:intergenic 30.0%
GAGATAGGTAAATTAGAAGT+CGG + chr1_4:6562618-6562637 None:intergenic 30.0%
GAGAATAAAATCAACAAGAC+TGG - chr1_4:6562879-6562898 Msa0146820:intron 30.0%
! GAATCTTGATTTGAATTAGC+AGG + chr1_4:6562948-6562967 None:intergenic 30.0%
GCTAATTCAAATCAAGATTC+AGG - chr1_4:6562948-6562967 Msa0146820:intron 30.0%
CTACTACTATTATCTTTGGT+AGG + chr1_4:6563125-6563144 None:intergenic 30.0%
AGAGGAATTTGCATTTATCT+TGG + chr1_4:6563195-6563214 None:intergenic 30.0%
TTTAATGATGTTCCAGGTCA+AGG - chr1_4:6560734-6560753 Msa0146820:CDS 35.0%
TATCATTAGAATCCTTGACC+TGG + chr1_4:6560749-6560768 None:intergenic 35.0%
ATTCTAATGATAAACGCGGT+TGG - chr1_4:6560757-6560776 Msa0146820:CDS 35.0%
ATGATTATCACAGCAGATTC+TGG + chr1_4:6561038-6561057 None:intergenic 35.0%
AATATCCTCTAATTGAAGCC+TGG + chr1_4:6561061-6561080 None:intergenic 35.0%
GGCTTCAATTAGAGGATATT+TGG - chr1_4:6561061-6561080 Msa0146820:intron 35.0%
!! TTCGTGTTTCTTTTTAGGCT+CGG - chr1_4:6561161-6561180 Msa0146820:CDS 35.0%
TAGAAGGATCACATTTGACA+TGG + chr1_4:6561750-6561769 None:intergenic 35.0%
GTCAAATGTGATCCTTCTAA+AGG - chr1_4:6561751-6561770 Msa0146820:CDS 35.0%
AATTTGTACAACCGAACAGT+CGG - chr1_4:6561846-6561865 Msa0146820:intron 35.0%
!! TGAGTTGGTATCATAGTAAG+TGG + chr1_4:6561983-6562002 None:intergenic 35.0%
! TCATATGTAACCGTCTTTTC+GGG + chr1_4:6562066-6562085 None:intergenic 35.0%
GAAAGAATCAATTTCAGTGG+AGG + chr1_4:6562100-6562119 None:intergenic 35.0%
ATGGAATCAAATGCAAGTGT+CGG - chr1_4:6562132-6562151 Msa0146820:CDS 35.0%
! TCTTGATTCTGAGGAGAATT+AGG + chr1_4:6562165-6562184 None:intergenic 35.0%
TCATCACTTTCTTGATTCTG+AGG + chr1_4:6562174-6562193 None:intergenic 35.0%
GATTGAGCAGCAATAAATGA+GGG + chr1_4:6562288-6562307 None:intergenic 35.0%
TGATTGAGCAGCAATAAATG+AGG + chr1_4:6562289-6562308 None:intergenic 35.0%
GTTCAAATTCAAATTCGGGT+AGG - chr1_4:6562325-6562344 Msa0146820:intron 35.0%
GATGCCAAAGATTTAGTAGA+AGG - chr1_4:6562543-6562562 Msa0146820:intron 35.0%
!!! CCATGATCAATCTTGTTTTC+AGG + chr1_4:6562579-6562598 None:intergenic 35.0%
CCTGAAAACAAGATTGATCA+TGG - chr1_4:6562576-6562595 Msa0146820:intron 35.0%
AATTGATCCGAATCAGAGAT+AGG + chr1_4:6562633-6562652 None:intergenic 35.0%
! AAGTCAGATGCAATTTTCTC+AGG + chr1_4:6562732-6562751 None:intergenic 35.0%
ATGACAATTCCTGAATCTCA+AGG - chr1_4:6562822-6562841 Msa0146820:intron 35.0%
TAGTAGAGAACAATTGCCTA+AGG - chr1_4:6563034-6563053 Msa0146820:intron 35.0%
! ATTGTGTAGCTTGCATGAAA+CGG + chr1_4:6563163-6563182 None:intergenic 35.0%
ATTTGCATTTATCTTGGCCT+TGG + chr1_4:6563189-6563208 None:intergenic 35.0%
TTAAGGTTAATCACATGCGG+TGG - chr1_4:6559850-6559869 Msa0146820:CDS 40.0%
!! AGATCACCATGTTGTTTCTG+AGG - chr1_4:6559888-6559907 Msa0146820:CDS 40.0%
GATTCACCTCAGAAACAACA+TGG + chr1_4:6559897-6559916 None:intergenic 40.0%
CTCTCTCTTAGATAATTCCG+AGG - chr1_4:6559916-6559935 Msa0146820:CDS 40.0%
!! GTGTGTTTTTGTTTGATCCG+AGG - chr1_4:6559972-6559991 Msa0146820:CDS 40.0%
TTGGTTGCATGAAACATCCT+CGG + chr1_4:6559992-6560011 None:intergenic 40.0%
AAACTTGATCTCGTGGATCT+AGG + chr1_4:6560543-6560562 None:intergenic 40.0%
ATGCACAAAACTTGATCTCG+TGG + chr1_4:6560550-6560569 None:intergenic 40.0%
! ATAAACGCGGTTGGAGTTTT+CGG - chr1_4:6560766-6560785 Msa0146820:CDS 40.0%
AACAACAGAGACCACATCTT+CGG - chr1_4:6560830-6560849 Msa0146820:CDS 40.0%
TGGTATCTCTGAGCAAACAT+CGG + chr1_4:6560970-6560989 None:intergenic 40.0%
GTTTCGGTGACAATTGTTTC+TGG + chr1_4:6560990-6561009 None:intergenic 40.0%
ATCCACCTTACTCTCAGTTT+CGG + chr1_4:6561006-6561025 None:intergenic 40.0%
ATTATCACAGCAGATTCTGG+TGG + chr1_4:6561035-6561054 None:intergenic 40.0%
ATCTGCTGTGATAATCATCC+AGG - chr1_4:6561040-6561059 Msa0146820:CDS 40.0%
ATCATCCAGGCTTCAATTAG+AGG - chr1_4:6561053-6561072 Msa0146820:intron 40.0%
AAAACGACACACTTAGAGCA+AGG + chr1_4:6561505-6561524 None:intergenic 40.0%
AAATGTGAAGCACACTTCTG+TGG - chr1_4:6561571-6561590 Msa0146820:intron 40.0%
! CAGCAATAAGTTTGCTTCTC+AGG - chr1_4:6561604-6561623 Msa0146820:intron 40.0%
ACAAACGGATGACGTTAAAC+AGG + chr1_4:6561655-6561674 None:intergenic 40.0%
TTTCCTTCCATTGAAGCTGT+TGG - chr1_4:6561699-6561718 Msa0146820:CDS 40.0%
ATTCCAACAGCTTCAATGGA+AGG + chr1_4:6561705-6561724 None:intergenic 40.0%
! GTTGATTCCAACAGCTTCAA+TGG + chr1_4:6561709-6561728 None:intergenic 40.0%
GGATCACATTTGACATGGAT+AGG + chr1_4:6561745-6561764 None:intergenic 40.0%
CAAGCAGAATCACCTTTAGA+AGG + chr1_4:6561766-6561785 None:intergenic 40.0%
! CTTCTAAAGGTGATTCTGCT+TGG - chr1_4:6561764-6561783 Msa0146820:CDS 40.0%
AAGGTGATTCTGCTTGGAAA+TGG - chr1_4:6561770-6561789 Msa0146820:CDS 40.0%
TGATTCTGCTTGGAAATGGT+TGG - chr1_4:6561774-6561793 Msa0146820:CDS 40.0%
GGAGAGATGGATGTTTGTTT+CGG - chr1_4:6561795-6561814 Msa0146820:CDS 40.0%
GACTGTTCGGTTGTACAAAT+TGG + chr1_4:6561847-6561866 None:intergenic 40.0%
AGATGCATGAGTGCTATCTT+TGG + chr1_4:6561878-6561897 None:intergenic 40.0%
TAGCACTCATGCATCTCAAT+CGG - chr1_4:6561882-6561901 Msa0146820:intron 40.0%
! TCAGCATTTCTGGAAGGATA+GGG + chr1_4:6562444-6562463 None:intergenic 40.0%
! ATCAGCATTTCTGGAAGGAT+AGG + chr1_4:6562445-6562464 None:intergenic 40.0%
ACTTTCAGGATCAGCATTTC+TGG + chr1_4:6562454-6562473 None:intergenic 40.0%
AGAAATGCTGATCCTGAAAG+TGG - chr1_4:6562453-6562472 Msa0146820:intron 40.0%
TGAATCAACAACATTGCCAC+GGG + chr1_4:6562673-6562692 None:intergenic 40.0%
CTGAATCAACAACATTGCCA+CGG + chr1_4:6562674-6562693 None:intergenic 40.0%
GTATTCTCAACAAGCTTCAC+CGG - chr1_4:6562791-6562810 Msa0146820:intron 40.0%
TATTCTCAACAAGCTTCACC+GGG - chr1_4:6562792-6562811 Msa0146820:intron 40.0%
GGAATTGTCATATAGCTTCC+CGG + chr1_4:6562813-6562832 None:intergenic 40.0%
AACACCTTCAAGTCAGGTTT+CGG - chr1_4:6562845-6562864 Msa0146820:intron 40.0%
! GAATCATGATTTGCATTCGC+AGG + chr1_4:6563002-6563021 None:intergenic 40.0%
GCGAATGCAAATCATGATTC+AGG - chr1_4:6563002-6563021 Msa0146820:intron 40.0%
AATCATGATTCAGGCTCAAG+AGG - chr1_4:6563011-6563030 Msa0146820:intron 40.0%
TTTCCATTCAGCTGATCCTT+AGG + chr1_4:6563053-6563072 None:intergenic 40.0%
GGAAAGAGACGCAATTCATT+TGG - chr1_4:6563068-6563087 Msa0146820:intron 40.0%
TTGGTAGGTTCTTGATCAGT+GGG + chr1_4:6563110-6563129 None:intergenic 40.0%
TTTGGTAGGTTCTTGATCAG+TGG + chr1_4:6563111-6563130 None:intergenic 40.0%
! TTGTGTAGCTTGCATGAAAC+GGG + chr1_4:6563162-6563181 None:intergenic 40.0%
AAGAAGAGACATTCCTTACC+TGG - chr1_4:6563257-6563276 Msa0146820:five_prime_UTR 40.0%
!!! AAGGAGCATTTTAAGGTCCG+TGG - chr1_4:6559648-6559667 Msa0146820:CDS 45.0%
CATCAAAAGTCACAGCCCAT+TGG + chr1_4:6560450-6560469 None:intergenic 45.0%
! GTTTTCGGAAGAGATCTGCA+AGG - chr1_4:6560781-6560800 Msa0146820:CDS 45.0%
GACCACATCTTCGGCAAATA+AGG - chr1_4:6560839-6560858 Msa0146820:CDS 45.0%
! CTCCTTATTTGCCGAAGATG+TGG + chr1_4:6560844-6560863 None:intergenic 45.0%
AACAACATTAGGCTCAGCTG+AGG + chr1_4:6560898-6560917 None:intergenic 45.0%
CAAACATCGGAGGATAACTG+TGG + chr1_4:6560957-6560976 None:intergenic 45.0%
TATCTCTGAGCAAACATCGG+AGG + chr1_4:6560967-6560986 None:intergenic 45.0%
TGTCACCGAAACTGAGAGTA+AGG - chr1_4:6560998-6561017 Msa0146820:CDS 45.0%
! TTGGTTAGAAGGCATGCTGT+TGG - chr1_4:6561241-6561260 Msa0146820:CDS 45.0%
GCTCAGAAGTCACATTCAGA+TGG - chr1_4:6561322-6561341 Msa0146820:intron 45.0%
CTTGGAAATGGTTGGAGAGA+TGG - chr1_4:6561782-6561801 Msa0146820:CDS 45.0%
! TTTGGTTTCGTCCGACTGTT+CGG + chr1_4:6561860-6561879 None:intergenic 45.0%
! GCTTGCTTGAAAGTGTGAGT+TGG + chr1_4:6561998-6562017 None:intergenic 45.0%
!! TATGTAACCGTCTTTTCGGG+AGG + chr1_4:6562063-6562082 None:intergenic 45.0%
TTTGCTCGACCAGGATGTAT+CGG - chr1_4:6562356-6562375 Msa0146820:intron 45.0%
! TCAGGATCAGCATTTCTGGA+AGG + chr1_4:6562450-6562469 None:intergenic 45.0%
GATAGTACGGTACCACTTTC+AGG + chr1_4:6562468-6562487 None:intergenic 45.0%
ACCTGACAGATCAGAGACTT+TGG - chr1_4:6562509-6562528 Msa0146820:intron 45.0%
TCCAAAGTCTCTGATCTGTC+AGG + chr1_4:6562513-6562532 None:intergenic 45.0%
ACAAACTGAGACTGTTCTGC+AGG - chr1_4:6562761-6562780 Msa0146820:intron 45.0%
!! GAAGGTGTTCCTTGAGATTC+AGG + chr1_4:6562834-6562853 None:intergenic 45.0%
TCAAGGAACACCTTCAAGTC+AGG - chr1_4:6562839-6562858 Msa0146820:intron 45.0%
! TTCACCGAAACCTGACTTGA+AGG + chr1_4:6562852-6562871 None:intergenic 45.0%
ATTTGCATTCGCAGGAGACT+TGG + chr1_4:6562994-6563013 None:intergenic 45.0%
TTGCCTAAGGATCAGCTGAA+TGG - chr1_4:6563047-6563066 Msa0146820:intron 45.0%
! TGTGTAGCTTGCATGAAACG+GGG + chr1_4:6563161-6563180 None:intergenic 45.0%
ATCTGGACTTGATCTTGGAG+AGG + chr1_4:6563213-6563232 None:intergenic 45.0%
TGCACATCTGGACTTGATCT+TGG + chr1_4:6563218-6563237 None:intergenic 45.0%
ATGTCAGTGTCATGCACATC+TGG + chr1_4:6563230-6563249 None:intergenic 45.0%
GATAATGACTGTTCGACACG+CGG + chr1_4:6563305-6563324 None:intergenic 45.0%
TCATTATCTCCAGCTCTGCA+GGG - chr1_4:6563317-6563336 Msa0146820:five_prime_UTR 45.0%
AGGTTAATCACATGCGGTGG+TGG - chr1_4:6559853-6559872 Msa0146820:CDS 50.0%
! TTAATCACATGCGGTGGTGG+TGG - chr1_4:6559856-6559875 Msa0146820:CDS 50.0%
TGATCTCGTGGATCTAGGCT+CGG + chr1_4:6560538-6560557 None:intergenic 50.0%
CACCGAAACTGAGAGTAAGG+TGG - chr1_4:6561001-6561020 Msa0146820:CDS 50.0%
AAGTTGCAAGCTGCTGTTCG+TGG - chr1_4:6561214-6561233 Msa0146820:CDS 50.0%
AGTTGCAAGCTGCTGTTCGT+GGG - chr1_4:6561215-6561234 Msa0146820:CDS 50.0%
TTCGTGGGCACTTGGTTAGA+AGG - chr1_4:6561230-6561249 Msa0146820:CDS 50.0%
CTCGGATGGTAGAGGTGAAT+CGG + chr1_4:6561944-6561963 None:intergenic 50.0%
TCTTCATCCTCGGATGGTAG+AGG + chr1_4:6561952-6561971 None:intergenic 50.0%
GTCTTCTCTTCATCCTCGGA+TGG + chr1_4:6561958-6561977 None:intergenic 50.0%
GGCAGTCTTCTCTTCATCCT+CGG + chr1_4:6561962-6561981 None:intergenic 50.0%
TCAGACCAACTAGAGACCGA+GGG - chr1_4:6562225-6562244 Msa0146820:CDS 50.0%
TCTTTCCCTCGGTCTCTAGT+TGG + chr1_4:6562233-6562252 None:intergenic 50.0%
GTGACTCAACCGATACATCC+TGG + chr1_4:6562368-6562387 None:intergenic 50.0%
GAAACTGTTAATGGCTCCCG+TGG - chr1_4:6562654-6562673 Msa0146820:intron 50.0%
!! GCATGCTCTTTGGAGTTCTC+AGG + chr1_4:6562702-6562721 None:intergenic 50.0%
AGGCTCAACAGCATGCTCTT+TGG + chr1_4:6562712-6562731 None:intergenic 50.0%
TGGATCAAGCAGTAGACGCA+GGG - chr1_4:6562899-6562918 Msa0146820:intron 50.0%
!! TCAGGCTCAAGAGTGTCTGT+CGG - chr1_4:6562966-6562985 Msa0146820:intron 50.0%
! GGTTCTTGATCAGTGGGTTC+AGG + chr1_4:6563104-6563123 None:intergenic 50.0%
GCAAGCTACACAATCTGCCA+AGG - chr1_4:6563169-6563188 Msa0146820:exon 50.0%
CATTCCTTACCTGGTGCAAC+TGG - chr1_4:6563266-6563285 Msa0146820:five_prime_UTR 50.0%
CTTACCAGTTGCACCAGGTA+AGG + chr1_4:6563273-6563292 None:intergenic 50.0%
GTCATTATCTCCAGCTCTGC+AGG - chr1_4:6563316-6563335 Msa0146820:five_prime_UTR 50.0%
TCGTGGATCTAGGCTCGGAA+TGG + chr1_4:6560533-6560552 None:intergenic 55.0%
GAGCATGTCGTGCTCGTACA+AGG + chr1_4:6561306-6561325 None:intergenic 55.0%
CGATTCACCTCTACCATCCG+AGG - chr1_4:6561942-6561961 Msa0146820:CDS 55.0%
AGAGGCTCCTCCCGAAAAGA+CGG - chr1_4:6562053-6562072 Msa0146820:CDS 55.0%
! CTCGGTCTCTAGTTGGTCTG+AGG + chr1_4:6562226-6562245 None:intergenic 55.0%
CTCAGACCAACTAGAGACCG+AGG - chr1_4:6562224-6562243 Msa0146820:CDS 55.0%
TCAAATTCGGGTAGGCCGAG+TGG - chr1_4:6562333-6562352 Msa0146820:intron 55.0%
TCCTGGTCGAGCAAACCACT+CGG + chr1_4:6562351-6562370 None:intergenic 55.0%
CTGGATCAAGCAGTAGACGC+AGG - chr1_4:6562898-6562917 Msa0146820:intron 55.0%
ACCTGGTGCAACTGGTAAGC+AGG - chr1_4:6563274-6563293 Msa0146820:five_prime_UTR 55.0%
CCTGGTGCAACTGGTAAGCA+GGG - chr1_4:6563275-6563294 Msa0146820:five_prime_UTR 55.0%
AGCTGCTGTTCGTGGGCACT+TGG - chr1_4:6561222-6561241 Msa0146820:CDS 60.0%
!! AGACGCAGGGTACTGTCTGC+TGG - chr1_4:6562912-6562931 Msa0146820:intron 60.0%
CCCTGCTTACCAGTTGCACC+AGG + chr1_4:6563278-6563297 None:intergenic 60.0%
TCCAGCTCTGCAGGGCACAA+AGG - chr1_4:6563325-6563344 Msa0146820:five_prime_UTR 60.0%
CCAGCTCTGCAGGGCACAAA+GGG - chr1_4:6563326-6563345 Msa0146820:five_prime_UTR 60.0%
CTGCAGGGCACAAAGGGCAA+TGG - chr1_4:6563332-6563351 Msa0146820:five_prime_UTR 60.0%
!! GCCGAGTGGTTTGCTCGACC+AGG - chr1_4:6562347-6562366 Msa0146820:intron 65.0%
CCCTTTGTGCCCTGCAGAGC+TGG + chr1_4:6563329-6563348 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6559647 6563358 6559647 ID=Msa0146820;Name=Msa0146820
chr1_4 mRNA 6559647 6563358 6559647 ID=Msa0146820-mRNA-1;Parent=Msa0146820;Name=Msa0146820-mRNA-1;_AED=0.09;_eAED=0.09;_QI=182|0.66|0.42|1|0.83|0.71|7|0|766
chr1_4 exon 6559647 6561068 6559647 ID=Msa0146820-mRNA-1:exon:2860;Parent=Msa0146820-mRNA-1
chr1_4 exon 6561081 6561290 6561081 ID=Msa0146820-mRNA-1:exon:2859;Parent=Msa0146820-mRNA-1
chr1_4 exon 6561380 6561460 6561380 ID=Msa0146820-mRNA-1:exon:2858;Parent=Msa0146820-mRNA-1
chr1_4 exon 6561636 6561827 6561636 ID=Msa0146820-mRNA-1:exon:2857;Parent=Msa0146820-mRNA-1
chr1_4 exon 6561923 6562104 6561923 ID=Msa0146820-mRNA-1:exon:2856;Parent=Msa0146820-mRNA-1
chr1_4 exon 6562126 6562255 6562126 ID=Msa0146820-mRNA-1:exon:2855;Parent=Msa0146820-mRNA-1
chr1_4 exon 6563096 6563358 6563096 ID=Msa0146820-mRNA-1:exon:2854;Parent=Msa0146820-mRNA-1
chr1_4 five_prime_UTR 6563177 6563358 6563177 ID=Msa0146820-mRNA-1:five_prime_utr;Parent=Msa0146820-mRNA-1
chr1_4 CDS 6563096 6563176 6563096 ID=Msa0146820-mRNA-1:cds;Parent=Msa0146820-mRNA-1
chr1_4 CDS 6562126 6562255 6562126 ID=Msa0146820-mRNA-1:cds;Parent=Msa0146820-mRNA-1
chr1_4 CDS 6561923 6562104 6561923 ID=Msa0146820-mRNA-1:cds;Parent=Msa0146820-mRNA-1
chr1_4 CDS 6561636 6561827 6561636 ID=Msa0146820-mRNA-1:cds;Parent=Msa0146820-mRNA-1
chr1_4 CDS 6561380 6561460 6561380 ID=Msa0146820-mRNA-1:cds;Parent=Msa0146820-mRNA-1
chr1_4 CDS 6561081 6561290 6561081 ID=Msa0146820-mRNA-1:cds;Parent=Msa0146820-mRNA-1
chr1_4 CDS 6559647 6561068 6559647 ID=Msa0146820-mRNA-1:cds;Parent=Msa0146820-mRNA-1
Gene Sequence

>Msa0146820

ATGGTGAAATCTACTTCTTGTTTAAGGTTAATCACATGCGGTGGTGGTGGTGACAAAGAAGATCACCATGTTGTTTCTGAGGTCAAGGATTCTAATGATAAACGCGGTTGGAGTTTTCGGAAGAGATCTGCAAGGCATCGTGTGCTTAGCAATACTGTGATAACAACAGAGACCACATCTTCGGCAAATAAGGAGACTTCAGAATATCCAACTGAGCCTAATGTTGTTGAGAAGATTTGTACGACAGATTTCTCTAATGAGAAGCCACAGTTATCCTCCGATGTTTGCTCAGAGATACCAGAAACAATTGTCACCGAAACTGAGAGTAAGGTGGATGTCAATCCACCAGAATCTGCTGTGATAATCATCCAGGCTTCAATTAGAGGATATTTGGCTCGGAGAGCACTTCTAAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGCTGTTCGTGGGCACTTGGTTAGAAGGCATGCTGTTGGAACATTGCGATGTGTTCAAGCTATTGCTAAAATGCAGCTCCTTGTACGAGCACGACATGCTCAGAAGTCACATTCAGATGGAAAAAATGATGACTCAAAAACTACGGATAATGAGCATTACACTGCTGAATCAAATGTGAAGCACACTTCTGTGGAAAAGCTTCTCAGCAATAAGTTTGCTTCTCAGCTGTTGGAATCAACACCAAAAAACAAACCTATCCATGTCAAATGTGATCCTTCTAAAGGTGATTCTGCTTGGAAATGGTTGGAGAGATGGATGTTTGTTTCGGCAAAAGATTCTGCAGAAGATAAAAAGCCAATTTGTACAACCGAACAGTCGGACGAAACCAAAGATAGCACTCATGCATCTCAATCGGAAACAGATATTCCATCTCAATTAGCCGATTCACCTCTACCATCCGAGGATGAAGAGAAGACTGCCACTTACTATGATACCAACTCACACTTTCAAGCAAGCCTCTCTTCATCTTCTCTAATAAATGATAACTTGGAAGAGGCTCCTCCCGAAAAGACGGTTACATATGATTCTAAAGTAACCTCCACTGAAATTGATTCTTTCCAAAATGAAATAATGGAATCAAATGCAAGTGTCGGACATGAGCCTAATTCTCCTCAGAATCAAGAAAGTGATGAACAGTACAAACAATCAACGAAAGCATTTGCCTCAGACCAACTAGAGACCGAGGGAAAGAAAATTACATTTGGATCAAGGAAGTTAAGCAATCCCTCATTTATTGCTGCTCAATCAAAATTTGAAGAGCTGAGTTCAAATTCAAATTCGGGTAGGCCGAGTGGTTTGCTCGACCAGGATGTATCGGTTGAGTCACAAGCAGATAGTGCATATATATCAAAAGAGTTCATTTCATCTGAGAATTCTATGCCCTATCCTTCCAGAAATGCTGATCCTGAAAGTGGTACCGTACTATCTATTTCTTCAACTCTTGATTCACCTGACAGATCAGAGACTTTGGAAATCGAGCACGATGCCAAAGATTTAGTAGAAGGGATAGTTAATCCTGAAAACAAGATTGATCATGGTGTTGAAGCAAATACTCCGACTTCTAATTTACCTATCTCTGATTCGGATCAATTAGAAACTGTTAATGGCTCCCGTGGCAATGTTGTTGATTCAGTGATGCCTGAGAACTCCAAAGAGCATGCTGTTGAGCCTGAGAAAATTGCATCTGACTTGTTTAGAGAACAAACTGAGACTGTTCTGCAGGATTTCACGTATTCTCAACAAGCTTCACCGGGAAGCTATATGACAATTCCTGAATCTCAAGGAACACCTTCAAGTCAGGTTTCGGTGAAACATAAAGAGAATAAAATCAACAAGACTGGATCAAGCAGTAGACGCAGGGTACTGTCTGCTGGTAACAAGTCTCCTGCTAATTCAAATCAAGATTCAGGCTCAAGAGTGTCTGTCGGTACCAAGTCTCCTGCGAATGCAAATCATGATTCAGGCTCAAGAGGTAGTAGAGAACAATTGCCTAAGGATCAGCTGAATGGAAAGAGACGCAATTCATTTGGCTCAATAAAACCTGAACCCACTGATCAAGAACCTACCAAAGATAATAGTAGTAGCAATAATACTCTTCCCCGTTTCATGCAAGCTACACAATCTGCCAAGGCCAAGATAAATGCAAATTCCTCTCCAAGATCAAGTCCAGATGTGCATGACACTGACATTAATATCAAGAAGAGACATTCCTTACCTGGTGCAACTGGTAAGCAGGGTTCTCCGCGTGTCGAACAGTCATTATCTCCAGCTCTGCAGGGCACAAAGGGCAATGGTTCA
Protein sequence

>Msa0146820

MVKSTSCLRLITCGGGGDKEDHHVVSEVKDSNDKRGWSFRKRSARHRVLSNTVITTETTSSANKETSEYPTEPNVVEKICTTDFSNEKPQLSSDVCSEIPETIVTETESKVDVNPPESAVIIIQASIRGYLARRALLKSKNVVKLQAAVRGHLVRRHAVGTLRCVQAIAKMQLLVRARHAQKSHSDGKNDDSKTTDNEHYTAESNVKHTSVEKLLSNKFASQLLESTPKNKPIHVKCDPSKGDSAWKWLERWMFVSAKDSAEDKKPICTTEQSDETKDSTHASQSETDIPSQLADSPLPSEDEEKTATYYDTNSHFQASLSSSSLINDNLEEAPPEKTVTYDSKVTSTEIDSFQNEIMESNASVGHEPNSPQNQESDEQYKQSTKAFASDQLETEGKKITFGSRKLSNPSFIAAQSKFEELSSNSNSGRPSGLLDQDVSVESQADSAYISKEFISSENSMPYPSRNADPESGTVLSISSTLDSPDRSETLEIEHDAKDLVEGIVNPENKIDHGVEANTPTSNLPISDSDQLETVNGSRGNVVDSVMPENSKEHAVEPEKIASDLFREQTETVLQDFTYSQQASPGSYMTIPESQGTPSSQVSVKHKENKINKTGSSSRRRVLSAGNKSPANSNQDSGSRVSVGTKSPANANHDSGSRGSREQLPKDQLNGKRRNSFGSIKPEPTDQEPTKDNSSSNNTLPRFMQATQSAKAKINANSSPRSSPDVHDTDINIKKRHSLPGATGKQGSPRVEQSLSPALQGTKGNGS