AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0102110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102110 MtrunA17_Chr1g0156121 94.981 777 28 2 1 766 1 777 0.0 1496
Msa0102110 MtrunA17_Chr7g0215371 78.947 76 16 0 99 174 1 76 1.29e-32 121
Msa0102110 MtrunA17_Chr5g0416161 37.313 134 83 1 119 252 121 253 3.08e-17 86.3
Msa0102110 MtrunA17_Chr4g0060381 35.714 140 84 2 117 252 100 237 1.77e-16 83.6
Msa0102110 MtrunA17_Chr3g0126901 36.047 172 66 6 117 254 112 273 3.32e-15 79.0
Msa0102110 MtrunA17_Chr1g0203711 35.374 147 74 5 115 253 113 246 1.32e-14 77.0
Msa0102110 MtrunA17_Chr4g0025441 32.121 165 82 4 117 255 96 256 2.40e-14 76.3
Msa0102110 MtrunA17_Chr8g0346021 59.649 57 23 0 119 175 129 185 3.48e-14 76.3
Msa0102110 MtrunA17_Chr6g0472551 33.333 156 88 7 100 253 106 247 8.02e-13 71.6
Msa0102110 MtrunA17_Chr8g0340761 49.254 67 34 0 119 185 128 194 1.64e-12 70.1
Msa0102110 MtrunA17_Chr1g0166431 32.704 159 85 5 13 169 31 169 1.93e-12 70.1
Msa0102110 MtrunA17_Chr7g0273861 50.769 65 32 0 117 181 125 189 4.68e-12 68.9
Msa0102110 MtrunA17_Chr1g0204901 45.833 72 38 1 117 188 136 206 5.52e-12 68.9
Msa0102110 MtrunA17_Chr8g0389781 52.542 59 28 0 119 177 128 186 8.07e-12 68.2
Msa0102110 MtrunA17_Chr1g0200161 28.834 163 90 3 117 253 141 303 8.95e-12 68.2
Msa0102110 MtrunA17_Chr4g0020671 43.210 81 44 1 110 190 94 172 1.63e-11 67.4
Msa0102110 MtrunA17_Chr1g0146931 56.364 55 24 0 114 168 119 173 2.15e-11 67.0
Msa0102110 MtrunA17_Chr1g0181581 28.302 159 92 2 117 253 116 274 3.85e-11 66.2
Msa0102110 MtrunA17_Chr3g0135851 57.692 52 22 0 117 168 91 142 7.61e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102110 AT1G19870.2 37.196 699 283 29 106 762 21 605 2.25e-95 309
Msa0102110 AT1G19870.1 37.196 699 283 29 106 762 204 788 1.40e-93 310
Msa0102110 AT1G18840.1 36.364 176 94 6 84 252 81 245 5.30e-22 101
Msa0102110 AT1G18840.3 36.364 176 94 6 84 252 81 245 5.30e-22 101
Msa0102110 AT1G18840.2 36.364 176 94 6 84 252 81 245 5.30e-22 101
Msa0102110 AT1G74690.1 40.288 139 78 3 117 252 113 249 7.00e-21 97.8
Msa0102110 AT1G14380.1 37.589 141 77 3 117 252 94 228 9.08e-21 97.8
Msa0102110 AT1G14380.3 37.589 141 77 3 117 252 94 228 9.08e-21 97.8
Msa0102110 AT1G14380.4 37.589 141 77 3 117 252 94 228 9.08e-21 97.8
Msa0102110 AT1G14380.6 37.589 141 77 3 117 252 94 228 1.11e-20 97.4
Msa0102110 AT1G14380.5 37.589 141 77 3 117 252 94 228 1.11e-20 97.4
Msa0102110 AT1G14380.2 37.589 141 77 3 117 252 94 228 1.11e-20 97.4
Msa0102110 AT1G14380.7 37.589 141 77 3 117 252 94 228 1.34e-20 97.1
Msa0102110 AT2G02790.1 29.231 195 129 2 66 252 48 241 6.39e-16 82.4
Msa0102110 AT2G02790.2 29.231 195 129 2 66 252 48 241 6.99e-16 82.0
Msa0102110 AT2G02790.3 29.231 195 129 2 66 252 48 241 6.99e-16 82.0
Msa0102110 AT5G03040.1 29.630 162 87 4 117 253 115 274 4.82e-15 79.0
Msa0102110 AT5G03040.3 29.630 162 87 4 117 253 115 274 4.82e-15 79.0
Msa0102110 AT5G03040.2 29.630 162 87 4 117 253 115 274 4.82e-15 79.0
Msa0102110 AT3G49260.1 51.471 68 33 0 117 184 120 187 5.91e-15 78.6
Msa0102110 AT3G49260.4 51.471 68 33 0 117 184 120 187 5.91e-15 78.6
Msa0102110 AT3G49260.2 51.471 68 33 0 117 184 120 187 5.91e-15 78.6
Msa0102110 AT3G49260.3 51.471 68 33 0 117 184 120 187 6.04e-15 78.6
Msa0102110 AT4G14750.1 31.818 220 116 6 1 207 1 199 8.44e-15 77.4
Msa0102110 AT3G52290.1 31.875 160 84 4 117 253 108 265 1.62e-14 77.0
Msa0102110 AT1G01110.2 55.072 69 30 1 119 187 123 190 2.26e-14 77.0
Msa0102110 AT4G14750.3 31.818 220 116 6 1 207 60 258 3.35e-14 76.3
Msa0102110 AT4G14750.2 31.818 220 116 6 1 207 60 258 3.66e-14 75.9
Msa0102110 AT4G00820.1 53.623 69 31 1 119 187 134 201 9.23e-14 75.1
Msa0102110 AT4G10640.1 35.329 167 77 6 19 182 27 165 2.72e-13 73.2
Msa0102110 AT3G51380.1 53.968 63 29 0 117 179 37 99 3.55e-13 66.6
Msa0102110 AT3G22190.3 30.435 161 88 3 119 255 90 250 9.28e-13 71.6
Msa0102110 AT3G22190.2 30.435 161 88 3 119 255 90 250 9.28e-13 71.6
Msa0102110 AT3G22190.4 30.435 161 88 3 119 255 90 250 9.28e-13 71.6
Msa0102110 AT3G22190.1 30.435 161 88 3 119 255 90 250 9.28e-13 71.6
Msa0102110 AT1G72670.1 30.097 206 96 7 89 253 57 255 1.15e-12 71.2
Msa0102110 AT5G13460.1 29.317 249 156 8 24 253 15 262 9.02e-12 68.6
Msa0102110 AT2G26180.1 57.692 52 22 0 117 168 84 135 2.58e-11 67.0
Msa0102110 AT3G09710.1 30.409 171 92 7 117 262 108 276 4.27e-11 66.2

Find 160 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTACTTCTTGTTTA+AGG 0.127404 1_3:-8817696 Msa0102110:CDS
TTGATTCCATTATTTCATTT+TGG 0.176997 1_3:+8815417 None:intergenic
GGCTTCAATTAGAGGATATT+TGG 0.187454 1_3:-8816475 Msa0102110:intron
GAAGGTGTTCCTTGAGATTC+AGG 0.211542 1_3:+8814705 None:intergenic
TCTTGATTCTGAGGAGAATT+AGG 0.232958 1_3:+8815374 None:intergenic
GTTTCGGTGACAATTGTTTC+TGG 0.235103 1_3:+8816549 None:intergenic
GATAGTACGGTACCACTTTC+AGG 0.245019 1_3:+8815071 None:intergenic
ACTTTCAGGATCAGCATTTC+TGG 0.256182 1_3:+8815085 None:intergenic
TATCCCTTCTACTAAATCTT+TGG 0.290554 1_3:+8814989 None:intergenic
TTCTTTCCAAAATGAAATAA+TGG 0.290941 1_3:-8815423 Msa0102110:CDS
CCCTTTGTGCCCTGCAGAGC+TGG 0.292599 1_3:+8814210 None:intergenic
TACTGTGATGTTGTTATTGT+TGG 0.294384 1_3:+8817826 None:intergenic
GACCACATCTTCAGCAAATA+AGG 0.295588 1_3:-8816697 Msa0102110:CDS
GATCAATTAGAAACTGTTAA+TGG 0.296217 1_3:-8814891 Msa0102110:CDS
CAGCAATAAGTTTGCTTCTC+AGG 0.298464 1_3:-8815932 Msa0102110:intron
GCTGAGTTCAAATTCAAATT+CGG 0.303504 1_3:-8815216 Msa0102110:CDS
ATTGCTACTACTATTATCTT+TGG 0.306041 1_3:+8814410 None:intergenic
GCTAATTCAAATCAAGATTC+AGG 0.330999 1_3:-8814588 Msa0102110:CDS
GGTTCTTGATCAGTGGGTTC+AGG 0.340125 1_3:+8814435 None:intergenic
GACTGTTCGGTTGTACAAAT+TGG 0.342687 1_3:+8815692 None:intergenic
GCGAATGCAAATCATGATTC+AGG 0.353964 1_3:-8814534 Msa0102110:CDS
CAAGCAGAATCACCTTTAGA+AGG 0.355744 1_3:+8815773 None:intergenic
AGGCTCAACAGCATGCTCTT+TGG 0.355751 1_3:+8814827 None:intergenic
ATCATCCAGGCTTCAATTAG+AGG 0.366920 1_3:-8816483 Msa0102110:CDS
ATGATTATCACAGCAGATTC+TGG 0.367431 1_3:+8816501 None:intergenic
GTCATTATCTCCAGCTCTGC+AGG 0.369580 1_3:-8814220 Msa0102110:CDS
CTGAGTTCAAATTCAAATTC+GGG 0.375719 1_3:-8815215 Msa0102110:CDS
TAATTTACCTATCTCTGATT+CGG 0.378191 1_3:-8814913 Msa0102110:CDS
CAAATCTTCTCAACAACATT+AGG 0.378376 1_3:+8816630 None:intergenic
TTGTGTAGCTTGCATGAAAC+GGG 0.383519 1_3:+8814377 None:intergenic
TGCACATCTGGACTTGATCT+TGG 0.387615 1_3:+8814321 None:intergenic
GGAAAGAGACGCAATTCATT+TGG 0.388346 1_3:-8814468 Msa0102110:CDS
GATGCCAAAGATTTAGTAGA+AGG 0.388914 1_3:-8814993 Msa0102110:CDS
GGAGAGATGGATGTTTGTTT+CGG 0.389207 1_3:-8815741 Msa0102110:CDS
AACACCTTCAAGTCAGGTTT+CGG 0.391099 1_3:-8814691 Msa0102110:CDS
AGAGGAATTTGCATTTATCT+TGG 0.400449 1_3:+8814344 None:intergenic
ATGTCAGTGTCATGCACATC+TGG 0.402507 1_3:+8814309 None:intergenic
GAGGGAAAGAAAATTACATT+TGG 0.405918 1_3:-8815293 Msa0102110:CDS
ACCTGGTGCAACTGGTAAGC+AGG 0.406901 1_3:-8814262 Msa0102110:CDS
TTTGGTTTCGTCCGACTGTT+CGG 0.411479 1_3:+8815679 None:intergenic
TTGGTAGGTTCTTGATCAGT+GGG 0.414639 1_3:+8814429 None:intergenic
TTTCCATTCAGCTGATCCTT+AGG 0.417372 1_3:+8814486 None:intergenic
TTCTCTAATAAATGATAACT+TGG 0.417692 1_3:-8815507 Msa0102110:CDS
AGATGCATGAGTGCTATCTT+TGG 0.419431 1_3:+8815661 None:intergenic
TTCGTGGGCACTTGGTTAGA+AGG 0.422143 1_3:-8816306 Msa0102110:CDS
CATTCCTTACCTGGTGCAAC+TGG 0.427428 1_3:-8814270 Msa0102110:CDS
TTCACCGAAACCTGACTTGA+AGG 0.429554 1_3:+8814687 None:intergenic
TCAAGGAACACCTTCAAGTC+AGG 0.430241 1_3:-8814697 Msa0102110:CDS
GGAATTGTCATATAGCTTCC+CGG 0.435431 1_3:+8814726 None:intergenic
GCATGCTCTTTGGAGTTCTC+AGG 0.444509 1_3:+8814837 None:intergenic
TCTTTCCCTCGGTCTCTAGT+TGG 0.446588 1_3:+8815306 None:intergenic
ACCTGACAGATCAGAGACTT+TGG 0.446642 1_3:-8815027 Msa0102110:CDS
ATCCACCTTACTCTCAGTTT+CGG 0.446953 1_3:+8816533 None:intergenic
ATTTGCATTTATCTTGGCCT+TGG 0.451725 1_3:+8814350 None:intergenic
AGAAAATTACATTTGGATCA+AGG 0.453684 1_3:-8815286 Msa0102110:CDS
CTTCTAAAGGTGATTCTGCT+TGG 0.454777 1_3:-8815772 Msa0102110:CDS
CCAGCTCTGCAGGGCACAAA+GGG 0.458401 1_3:-8814210 Msa0102110:CDS
AAGGTGATTCTGCTTGGAAA+TGG 0.460534 1_3:-8815766 Msa0102110:CDS
GAGAATAAAATCAACAAGAC+TGG 0.464101 1_3:-8814657 Msa0102110:CDS
CTCGGATGGTAGAGGTGAAT+CGG 0.465697 1_3:+8815595 None:intergenic
GAATCTTGATTTGAATTAGC+AGG 0.467650 1_3:+8814591 None:intergenic
AATTGATCCGAATCAGAGAT+AGG 0.472689 1_3:+8814906 None:intergenic
AGCTGCTGTTCGTGGGCACT+TGG 0.480789 1_3:-8816314 Msa0102110:CDS
ATTGTTGGAAAATGTGAGAA+AGG 0.480937 1_3:+8817841 None:intergenic
GTATTCTCAACAAGCTTCAC+CGG 0.482731 1_3:-8814745 Msa0102110:CDS
ATAACAACATCACAGTATTA+CGG 0.486696 1_3:-8817820 Msa0102110:five_prime_UTR
TCCAAAGTCTCTGATCTGTC+AGG 0.487160 1_3:+8815026 None:intergenic
CCTGAAAACAAGATTGATCA+TGG 0.488495 1_3:-8814960 Msa0102110:CDS
ATTTGCATTCGCAGGAGACT+TGG 0.490435 1_3:+8814545 None:intergenic
GTCAAATGTGATCCTTCTAA+AGG 0.490498 1_3:-8815785 Msa0102110:CDS
ATCTGCTGTGATAATCATCC+AGG 0.492717 1_3:-8816496 Msa0102110:CDS
ATTGTGTAGCTTGCATGAAA+CGG 0.493254 1_3:+8814376 None:intergenic
AGGTTAATCACATGCGGTGG+TGG 0.495955 1_3:-8817676 Msa0102110:CDS
CTTACCAGTTGCACCAGGTA+AGG 0.496866 1_3:+8814266 None:intergenic
TTTGGTAGGTTCTTGATCAG+TGG 0.497450 1_3:+8814428 None:intergenic
TTGCCTAAGGATCAGCTGAA+TGG 0.499267 1_3:-8814489 Msa0102110:CDS
CTTGGAAATGGTTGGAGAGA+TGG 0.499335 1_3:-8815754 Msa0102110:CDS
CTACTACTATTATCTTTGGT+AGG 0.501445 1_3:+8814414 None:intergenic
GAGCATGTCGTGCTCGTACA+AGG 0.502104 1_3:+8816233 None:intergenic
GGCAGTCTTCTCTTCATCCT+CGG 0.508919 1_3:+8815577 None:intergenic
AACTGAAGAATAACTTGAGA+TGG 0.509161 1_3:+8815620 None:intergenic
TGTCACCGAAACTGAGAGTA+AGG 0.509505 1_3:-8816538 Msa0102110:CDS
TCATCACTTTCTTGATTCTG+AGG 0.511188 1_3:+8815365 None:intergenic
TAGCACTCATGCATCTCAAT+CGG 0.515881 1_3:-8815654 Msa0102110:CDS
GCCGAGTGGTTTGCTCGACC+AGG 0.516424 1_3:-8815189 Msa0102110:CDS
ATCAGCATTTCTGGAAGGAT+AGG 0.517006 1_3:+8815094 None:intergenic
AATATCCTCTAATTGAAGCC+TGG 0.517071 1_3:+8816478 None:intergenic
TCTTCATCCTCGGATGGTAG+AGG 0.519415 1_3:+8815587 None:intergenic
GAATCATGATTTGCATTCGC+AGG 0.523017 1_3:+8814537 None:intergenic
TTGTTGGAAAATGTGAGAAA+GGG 0.523624 1_3:+8817842 None:intergenic
ACAAACTGAGACTGTTCTGC+AGG 0.526275 1_3:-8814775 Msa0102110:CDS
AATAAATGATAACTTGGAAG+AGG 0.528936 1_3:-8815501 Msa0102110:CDS
ATTCTAATGATAAACGCGGT+TGG 0.530998 1_3:-8816779 Msa0102110:CDS
GGATCACATTTGACATGGAT+AGG 0.532828 1_3:+8815794 None:intergenic
AGAAATGCTGATCCTGAAAG+TGG 0.536855 1_3:-8815083 Msa0102110:CDS
GAGATAGGTAAATTAGAAGT+CGG 0.539880 1_3:+8814921 None:intergenic
TTGGTTAGAAGGCATGCTGT+TGG 0.542923 1_3:-8816295 Msa0102110:CDS
AGACGCAGGGTACTGTCTGC+TGG 0.543441 1_3:-8814624 Msa0102110:CDS
TGATTGAGCAGCAATAAATG+AGG 0.543692 1_3:+8815250 None:intergenic
CTCCTTATTTGCTGAAGATG+TGG 0.543734 1_3:+8816695 None:intergenic
TGATTCTGCTTGGAAATGGT+TGG 0.544910 1_3:-8815762 Msa0102110:CDS
TTGGAAAGAATCAATTTCAG+TGG 0.550366 1_3:+8815436 None:intergenic
GTGACTCAACCGATACATCC+TGG 0.551810 1_3:+8815171 None:intergenic
GAAAGAATCAATTTCAGTGG+AGG 0.553284 1_3:+8815439 None:intergenic
AGTTGAAGAAATAGATAGTA+CGG 0.556045 1_3:+8815058 None:intergenic
ATGACAATTCCTGAATCTCA+AGG 0.562140 1_3:-8814714 Msa0102110:CDS
TGAGTTGGTATCATAGTAAG+TGG 0.562597 1_3:+8815556 None:intergenic
GTCTTCTCTTCATCCTCGGA+TGG 0.563357 1_3:+8815581 None:intergenic
TTTGCTCGACCAGGATGTAT+CGG 0.563779 1_3:-8815180 Msa0102110:CDS
AGATCACCATGTTGTTTCTG+AGG 0.564237 1_3:-8817641 Msa0102110:intron
AAGTTGCAAGCTGCTGTTCG+TGG 0.564977 1_3:-8816322 Msa0102110:CDS
TCAGCATTTCTGGAAGGATA+GGG 0.569303 1_3:+8815095 None:intergenic
CCCTGCTTACCAGTTGCACC+AGG 0.570056 1_3:+8814261 None:intergenic
CTGCAGGGCACAAAGGGCAA+TGG 0.570514 1_3:-8814204 Msa0102110:CDS
GATTGAGCAGCAATAAATGA+GGG 0.573179 1_3:+8815251 None:intergenic
TCCAGCTCTGCAGGGCACAA+AGG 0.574271 1_3:-8814211 Msa0102110:CDS
ATGGAATCAAATGCAAGTGT+CGG 0.577817 1_3:-8815404 Msa0102110:CDS
TTAATCACATGCGGTGGTGG+TGG 0.579067 1_3:-8817673 Msa0102110:CDS
AAGAAGAGACATTCCTTACC+TGG 0.579855 1_3:-8814279 Msa0102110:CDS
TAGTAGAGAACAATTGCCTA+AGG 0.581315 1_3:-8814502 Msa0102110:CDS
AAATGTGAAGCACACTTCTG+TGG 0.582438 1_3:-8815965 Msa0102110:CDS
AATTTGTACAACCGAACAGT+CGG 0.584606 1_3:-8815690 Msa0102110:CDS
TCAGGATCAGCATTTCTGGA+AGG 0.588211 1_3:+8815089 None:intergenic
CCTGGTGCAACTGGTAAGCA+GGG 0.589383 1_3:-8814261 Msa0102110:CDS
CTCGGTCTCTAGTTGGTCTG+AGG 0.591676 1_3:+8815313 None:intergenic
TAGAAGGATCACATTTGACA+TGG 0.592428 1_3:+8815789 None:intergenic
GCTCAGAAGTCACATTCAGA+TGG 0.597896 1_3:-8816214 Msa0102110:CDS
AATCATGATTCAGGCTCAAG+AGG 0.598045 1_3:-8814525 Msa0102110:CDS
AGAGGCTCCTCCCGAAAAGA+CGG 0.601939 1_3:-8815483 Msa0102110:CDS
GATAATGACTGTTCGACACG+CGG 0.605175 1_3:+8814234 None:intergenic
CTGGATCAAGCAGTAGACGC+AGG 0.606218 1_3:-8814638 Msa0102110:CDS
TGTTTAAGGTTAATCACATG+CGG 0.607247 1_3:-8817682 Msa0102110:CDS
ATTATCACAGCAGATTCTGG+TGG 0.607983 1_3:+8816504 None:intergenic
ATGCCAAAGATTTAGTAGAA+GGG 0.611090 1_3:-8814992 Msa0102110:CDS
AGTTGCAAGCTGCTGTTCGT+GGG 0.611911 1_3:-8816321 Msa0102110:CDS
CTGAATCAACAACATTGCCA+CGG 0.613933 1_3:+8814865 None:intergenic
TGAATCAACAACATTGCCAC+GGG 0.613962 1_3:+8814866 None:intergenic
ATCTGGACTTGATCTTGGAG+AGG 0.618466 1_3:+8814326 None:intergenic
TTATTAGAGAAGATGAAGAG+AGG 0.625076 1_3:+8815519 None:intergenic
TGGTATCTCTGAGCAAACAT+CGG 0.629581 1_3:+8816569 None:intergenic
TCATTATCTCCAGCTCTGCA+GGG 0.630457 1_3:-8814219 Msa0102110:CDS
GAAACTGTTAATGGCTCCCG+TGG 0.632617 1_3:-8814882 Msa0102110:CDS
TATTCTCAACAAGCTTCACC+GGG 0.635415 1_3:-8814744 Msa0102110:CDS
GTTCAAATTCAAATTCGGGT+AGG 0.637397 1_3:-8815211 Msa0102110:CDS
GCAAGCTACACAATCTGCCA+AGG 0.638530 1_3:-8814367 Msa0102110:CDS
CGATTCACCTCTACCATCCG+AGG 0.641344 1_3:-8815594 Msa0102110:CDS
CTCAGACCAACTAGAGACCG+AGG 0.645334 1_3:-8815312 Msa0102110:CDS
GCTTGCTTGAAAGTGTGAGT+TGG 0.649171 1_3:+8815541 None:intergenic
TGGATCAAGCAGTAGACGCA+GGG 0.654626 1_3:-8814637 Msa0102110:CDS
TCAAATTCGGGTAGGCCGAG+TGG 0.655550 1_3:-8815203 Msa0102110:CDS
TCCTGGTCGAGCAAACCACT+CGG 0.660396 1_3:+8815188 None:intergenic
CACCGAAACTGAGAGTAAGG+TGG 0.667231 1_3:-8816535 Msa0102110:CDS
TTAAGGTTAATCACATGCGG+TGG 0.672478 1_3:-8817679 Msa0102110:CDS
TATCTCTGAGCAAACATCGG+AGG 0.674060 1_3:+8816572 None:intergenic
TCAGGCTCAAGAGTGTCTGT+CGG 0.675797 1_3:-8814570 Msa0102110:CDS
TCAGACCAACTAGAGACCGA+GGG 0.692845 1_3:-8815311 Msa0102110:CDS
GATTCACCTCAGAAACAACA+TGG 0.720891 1_3:+8817635 None:intergenic
TGTGTAGCTTGCATGAAACG+GGG 0.721075 1_3:+8814378 None:intergenic
CAAACATCGGAGGATAACTG+TGG 0.737595 1_3:+8816582 None:intergenic
AAGGATTCTAATGATAAACG+CGG 0.747406 1_3:-8816783 Msa0102110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTCTTTCTATTTT+TGG - chr1_3:8814633-8814652 Msa0102110:CDS 10.0%
!! TTCATAATTGAATAGTTATA+AGG - chr1_3:8814675-8814694 Msa0102110:CDS 15.0%
!!! CTATTAAACGAATAAAATTT+TGG + chr1_3:8815963-8815982 None:intergenic 15.0%
!! TTATGAATCAAAATCTTGTA+AGG - chr1_3:8815650-8815669 Msa0102110:CDS 20.0%
!! ACGAACAAAAGATTTATAAA+AGG + chr1_3:8815692-8815711 None:intergenic 20.0%
!!! TTTTATTCGTTTAATAGTTG+TGG - chr1_3:8815966-8815985 Msa0102110:CDS 20.0%
!!! TTATTTTTTTACTGTGGTTT+AGG - chr1_3:8816069-8816088 Msa0102110:intron 20.0%
!! ATTTAGTATGAATGAACAAA+CGG + chr1_3:8816216-8816235 None:intergenic 20.0%
!! TTCTCTAATAAATGATAACT+TGG - chr1_3:8816575-8816594 Msa0102110:CDS 20.0%
!! TTCTTTCCAAAATGAAATAA+TGG - chr1_3:8816659-8816678 Msa0102110:intron 20.0%
!!! TTGATTCCATTATTTCATTT+TGG + chr1_3:8816668-8816687 None:intergenic 20.0%
! GTAAGTAAGTTTAAAAACCA+CGG + chr1_3:8814221-8814240 None:intergenic 25.0%
! ATAACAACATCACAGTATTA+CGG - chr1_3:8814262-8814281 Msa0102110:CDS 25.0%
!! TGAAATCTACTTCTTGTTTA+AGG - chr1_3:8814386-8814405 Msa0102110:CDS 25.0%
! AATAAGAAAAGAAACGAAGT+TGG + chr1_3:8814564-8814583 None:intergenic 25.0%
! TAAAGAAGTAAAATCAAGCA+AGG + chr1_3:8814823-8814842 None:intergenic 25.0%
! TATATACATCTTTATGCCAA+TGG - chr1_3:8814976-8814995 Msa0102110:CDS 25.0%
! ATATACATCTTTATGCCAAT+GGG - chr1_3:8814977-8814996 Msa0102110:CDS 25.0%
! GATGTAAGTTGTACAATTTA+CGG - chr1_3:8815011-8815030 Msa0102110:CDS 25.0%
! ATCAACTAAGCACAAAAAAA+CGG + chr1_3:8815037-8815056 None:intergenic 25.0%
!! TTTTTCTTTAATGATGTTCC+AGG - chr1_3:8815274-8815293 Msa0102110:CDS 25.0%
!! TTTTGTTCGTGTTTCTTTTT+AGG - chr1_3:8815702-8815721 Msa0102110:CDS 25.0%
! AAATGATGACTCAAAAACTA+CGG - chr1_3:8815894-8815913 Msa0102110:intron 25.0%
!!! GTCGTTTTATTTTTTTACTG+TGG - chr1_3:8816063-8816082 Msa0102110:intron 25.0%
! AATAAATGATAACTTGGAAG+AGG - chr1_3:8816581-8816600 Msa0102110:CDS 25.0%
!! AAATGTAATTTTCTTTCCCT+CGG + chr1_3:8816790-8816809 None:intergenic 25.0%
! AGAAAATTACATTTGGATCA+AGG - chr1_3:8816796-8816815 Msa0102110:intron 25.0%
! AGTTGAAGAAATAGATAGTA+CGG + chr1_3:8817027-8817046 None:intergenic 25.0%
! TAATTTACCTATCTCTGATT+CGG - chr1_3:8817169-8817188 Msa0102110:intron 25.0%
! GATCAATTAGAAACTGTTAA+TGG - chr1_3:8817191-8817210 Msa0102110:intron 25.0%
! ATTGCTACTACTATTATCTT+TGG + chr1_3:8817675-8817694 None:intergenic 25.0%
TTGTTGGAAAATGTGAGAAA+GGG + chr1_3:8814243-8814262 None:intergenic 30.0%
ATTGTTGGAAAATGTGAGAA+AGG + chr1_3:8814244-8814263 None:intergenic 30.0%
! TACTGTGATGTTGTTATTGT+TGG + chr1_3:8814259-8814278 None:intergenic 30.0%
GTGAACAAAAAACATAGCTA+TGG - chr1_3:8814363-8814382 Msa0102110:CDS 30.0%
! TGTTTAAGGTTAATCACATG+CGG - chr1_3:8814400-8814419 Msa0102110:CDS 30.0%
TTGTGAAAAACACTAAACCT+CGG + chr1_3:8814489-8814508 None:intergenic 30.0%
!! AATAGTTATAAGGTGCTGTT+TGG - chr1_3:8814685-8814704 Msa0102110:CDS 30.0%
CTGTTTGGATAACATTGAAT+AGG - chr1_3:8814700-8814719 Msa0102110:CDS 30.0%
!! TGAAATTTTGATCGTGATTC+AGG - chr1_3:8815211-8815230 Msa0102110:CDS 30.0%
AAGGATTCTAATGATAAACG+CGG - chr1_3:8815299-8815318 Msa0102110:CDS 30.0%
GAGGATTGAAAACTAATACT+TGG + chr1_3:8815425-8815444 None:intergenic 30.0%
CAAATCTTCTCAACAACATT+AGG + chr1_3:8815455-8815474 None:intergenic 30.0%
! TTTGGTATGTTTCTTTTCTG+AGG - chr1_3:8815625-8815644 Msa0102110:intron 30.0%
!!! ACATGGATAGGTTTGTTTTT+TGG + chr1_3:8816279-8816298 None:intergenic 30.0%
AACTGAAGAATAACTTGAGA+TGG + chr1_3:8816465-8816484 None:intergenic 30.0%
TTATTAGAGAAGATGAAGAG+AGG + chr1_3:8816566-8816585 None:intergenic 30.0%
! ATCATATGTAACCGTCTTTT+CGG + chr1_3:8816613-8816632 None:intergenic 30.0%
TTGGAAAGAATCAATTTCAG+TGG + chr1_3:8816649-8816668 None:intergenic 30.0%
GAGGGAAAGAAAATTACATT+TGG - chr1_3:8816789-8816808 Msa0102110:CDS 30.0%
GCTGAGTTCAAATTCAAATT+CGG - chr1_3:8816866-8816885 Msa0102110:intron 30.0%
CTGAGTTCAAATTCAAATTC+GGG - chr1_3:8816867-8816886 Msa0102110:intron 30.0%
ATGCCAAAGATTTAGTAGAA+GGG - chr1_3:8817090-8817109 Msa0102110:intron 30.0%
TATCCCTTCTACTAAATCTT+TGG + chr1_3:8817096-8817115 None:intergenic 30.0%
GAGATAGGTAAATTAGAAGT+CGG + chr1_3:8817164-8817183 None:intergenic 30.0%
GAGAATAAAATCAACAAGAC+TGG - chr1_3:8817425-8817444 Msa0102110:intron 30.0%
! GAATCTTGATTTGAATTAGC+AGG + chr1_3:8817494-8817513 None:intergenic 30.0%
GCTAATTCAAATCAAGATTC+AGG - chr1_3:8817494-8817513 Msa0102110:intron 30.0%
CTACTACTATTATCTTTGGT+AGG + chr1_3:8817671-8817690 None:intergenic 30.0%
AGAGGAATTTGCATTTATCT+TGG + chr1_3:8817741-8817760 None:intergenic 30.0%
TTTAATGATGTTCCAGGTCA+AGG - chr1_3:8815280-8815299 Msa0102110:CDS 35.0%
TATCATTAGAATCCTTGACC+TGG + chr1_3:8815295-8815314 None:intergenic 35.0%
ATTCTAATGATAAACGCGGT+TGG - chr1_3:8815303-8815322 Msa0102110:CDS 35.0%
ATGATTATCACAGCAGATTC+TGG + chr1_3:8815584-8815603 None:intergenic 35.0%
AATATCCTCTAATTGAAGCC+TGG + chr1_3:8815607-8815626 None:intergenic 35.0%
GGCTTCAATTAGAGGATATT+TGG - chr1_3:8815607-8815626 Msa0102110:intron 35.0%
!! TTCGTGTTTCTTTTTAGGCT+CGG - chr1_3:8815707-8815726 Msa0102110:CDS 35.0%
TAGAAGGATCACATTTGACA+TGG + chr1_3:8816296-8816315 None:intergenic 35.0%
GTCAAATGTGATCCTTCTAA+AGG - chr1_3:8816297-8816316 Msa0102110:CDS 35.0%
AATTTGTACAACCGAACAGT+CGG - chr1_3:8816392-8816411 Msa0102110:intron 35.0%
!! TGAGTTGGTATCATAGTAAG+TGG + chr1_3:8816529-8816548 None:intergenic 35.0%
! TCATATGTAACCGTCTTTTC+GGG + chr1_3:8816612-8816631 None:intergenic 35.0%
GAAAGAATCAATTTCAGTGG+AGG + chr1_3:8816646-8816665 None:intergenic 35.0%
ATGGAATCAAATGCAAGTGT+CGG - chr1_3:8816678-8816697 Msa0102110:intron 35.0%
! TCTTGATTCTGAGGAGAATT+AGG + chr1_3:8816711-8816730 None:intergenic 35.0%
TCATCACTTTCTTGATTCTG+AGG + chr1_3:8816720-8816739 None:intergenic 35.0%
GATTGAGCAGCAATAAATGA+GGG + chr1_3:8816834-8816853 None:intergenic 35.0%
TGATTGAGCAGCAATAAATG+AGG + chr1_3:8816835-8816854 None:intergenic 35.0%
GTTCAAATTCAAATTCGGGT+AGG - chr1_3:8816871-8816890 Msa0102110:intron 35.0%
GATGCCAAAGATTTAGTAGA+AGG - chr1_3:8817089-8817108 Msa0102110:intron 35.0%
!!! CCATGATCAATCTTGTTTTC+AGG + chr1_3:8817125-8817144 None:intergenic 35.0%
CCTGAAAACAAGATTGATCA+TGG - chr1_3:8817122-8817141 Msa0102110:intron 35.0%
AATTGATCCGAATCAGAGAT+AGG + chr1_3:8817179-8817198 None:intergenic 35.0%
! AAGTCAGATGCAATTTTCTC+AGG + chr1_3:8817278-8817297 None:intergenic 35.0%
ATGACAATTCCTGAATCTCA+AGG - chr1_3:8817368-8817387 Msa0102110:intron 35.0%
TAGTAGAGAACAATTGCCTA+AGG - chr1_3:8817580-8817599 Msa0102110:intron 35.0%
! ATTGTGTAGCTTGCATGAAA+CGG + chr1_3:8817709-8817728 None:intergenic 35.0%
ATTTGCATTTATCTTGGCCT+TGG + chr1_3:8817735-8817754 None:intergenic 35.0%
TTAAGGTTAATCACATGCGG+TGG - chr1_3:8814403-8814422 Msa0102110:CDS 40.0%
!! AGATCACCATGTTGTTTCTG+AGG - chr1_3:8814441-8814460 Msa0102110:CDS 40.0%
GATTCACCTCAGAAACAACA+TGG + chr1_3:8814450-8814469 None:intergenic 40.0%
CTCTCTCTTAGATAATTCCG+AGG - chr1_3:8814469-8814488 Msa0102110:CDS 40.0%
!! GTGTGTTTTTGTTTGATCCG+AGG - chr1_3:8814525-8814544 Msa0102110:CDS 40.0%
TTGGTTGCATGAAACATCCT+CGG + chr1_3:8814545-8814564 None:intergenic 40.0%
AAACTTGATCTCGTGGATCT+AGG + chr1_3:8815089-8815108 None:intergenic 40.0%
ATGCACAAAACTTGATCTCG+TGG + chr1_3:8815096-8815115 None:intergenic 40.0%
! ATAAACGCGGTTGGAGTTTT+CGG - chr1_3:8815312-8815331 Msa0102110:CDS 40.0%
GACCACATCTTCAGCAAATA+AGG - chr1_3:8815385-8815404 Msa0102110:CDS 40.0%
! CTCCTTATTTGCTGAAGATG+TGG + chr1_3:8815390-8815409 None:intergenic 40.0%
TGGTATCTCTGAGCAAACAT+CGG + chr1_3:8815516-8815535 None:intergenic 40.0%
GTTTCGGTGACAATTGTTTC+TGG + chr1_3:8815536-8815555 None:intergenic 40.0%
ATCCACCTTACTCTCAGTTT+CGG + chr1_3:8815552-8815571 None:intergenic 40.0%
ATTATCACAGCAGATTCTGG+TGG + chr1_3:8815581-8815600 None:intergenic 40.0%
ATCTGCTGTGATAATCATCC+AGG - chr1_3:8815586-8815605 Msa0102110:CDS 40.0%
ATCATCCAGGCTTCAATTAG+AGG - chr1_3:8815599-8815618 Msa0102110:CDS 40.0%
AAAACGACACACTTAGAGCA+AGG + chr1_3:8816051-8816070 None:intergenic 40.0%
AAATGTGAAGCACACTTCTG+TGG - chr1_3:8816117-8816136 Msa0102110:intron 40.0%
! CAGCAATAAGTTTGCTTCTC+AGG - chr1_3:8816150-8816169 Msa0102110:intron 40.0%
ACAAACGGATGACGTTAAAC+AGG + chr1_3:8816201-8816220 None:intergenic 40.0%
TTTCCTTCCATTGAAGCTGT+TGG - chr1_3:8816245-8816264 Msa0102110:CDS 40.0%
ATTCCAACAGCTTCAATGGA+AGG + chr1_3:8816251-8816270 None:intergenic 40.0%
! GTTGATTCCAACAGCTTCAA+TGG + chr1_3:8816255-8816274 None:intergenic 40.0%
GGATCACATTTGACATGGAT+AGG + chr1_3:8816291-8816310 None:intergenic 40.0%
CAAGCAGAATCACCTTTAGA+AGG + chr1_3:8816312-8816331 None:intergenic 40.0%
! CTTCTAAAGGTGATTCTGCT+TGG - chr1_3:8816310-8816329 Msa0102110:CDS 40.0%
AAGGTGATTCTGCTTGGAAA+TGG - chr1_3:8816316-8816335 Msa0102110:CDS 40.0%
TGATTCTGCTTGGAAATGGT+TGG - chr1_3:8816320-8816339 Msa0102110:CDS 40.0%
GGAGAGATGGATGTTTGTTT+CGG - chr1_3:8816341-8816360 Msa0102110:CDS 40.0%
GACTGTTCGGTTGTACAAAT+TGG + chr1_3:8816393-8816412 None:intergenic 40.0%
AGATGCATGAGTGCTATCTT+TGG + chr1_3:8816424-8816443 None:intergenic 40.0%
TAGCACTCATGCATCTCAAT+CGG - chr1_3:8816428-8816447 Msa0102110:intron 40.0%
! TCAGCATTTCTGGAAGGATA+GGG + chr1_3:8816990-8817009 None:intergenic 40.0%
! ATCAGCATTTCTGGAAGGAT+AGG + chr1_3:8816991-8817010 None:intergenic 40.0%
ACTTTCAGGATCAGCATTTC+TGG + chr1_3:8817000-8817019 None:intergenic 40.0%
AGAAATGCTGATCCTGAAAG+TGG - chr1_3:8816999-8817018 Msa0102110:intron 40.0%
TGAATCAACAACATTGCCAC+GGG + chr1_3:8817219-8817238 None:intergenic 40.0%
CTGAATCAACAACATTGCCA+CGG + chr1_3:8817220-8817239 None:intergenic 40.0%
GTATTCTCAACAAGCTTCAC+CGG - chr1_3:8817337-8817356 Msa0102110:intron 40.0%
TATTCTCAACAAGCTTCACC+GGG - chr1_3:8817338-8817357 Msa0102110:intron 40.0%
GGAATTGTCATATAGCTTCC+CGG + chr1_3:8817359-8817378 None:intergenic 40.0%
AACACCTTCAAGTCAGGTTT+CGG - chr1_3:8817391-8817410 Msa0102110:intron 40.0%
! GAATCATGATTTGCATTCGC+AGG + chr1_3:8817548-8817567 None:intergenic 40.0%
GCGAATGCAAATCATGATTC+AGG - chr1_3:8817548-8817567 Msa0102110:intron 40.0%
AATCATGATTCAGGCTCAAG+AGG - chr1_3:8817557-8817576 Msa0102110:intron 40.0%
TTTCCATTCAGCTGATCCTT+AGG + chr1_3:8817599-8817618 None:intergenic 40.0%
GGAAAGAGACGCAATTCATT+TGG - chr1_3:8817614-8817633 Msa0102110:intron 40.0%
TTGGTAGGTTCTTGATCAGT+GGG + chr1_3:8817656-8817675 None:intergenic 40.0%
TTTGGTAGGTTCTTGATCAG+TGG + chr1_3:8817657-8817676 None:intergenic 40.0%
! TTGTGTAGCTTGCATGAAAC+GGG + chr1_3:8817708-8817727 None:intergenic 40.0%
AAGAAGAGACATTCCTTACC+TGG - chr1_3:8817803-8817822 Msa0102110:five_prime_UTR 40.0%
!!! AAGGAGCATTTTAAGGTCCG+TGG - chr1_3:8814201-8814220 Msa0102110:CDS 45.0%
CATCAAAAGTCACAGCCCAT+TGG + chr1_3:8814995-8815014 None:intergenic 45.0%
! GTTTTCGGAAGAGATCTGCA+AGG - chr1_3:8815327-8815346 Msa0102110:CDS 45.0%
AACAACATTAGGCTCAGCTG+AGG + chr1_3:8815444-8815463 None:intergenic 45.0%
CAAACATCGGAGGATAACTG+TGG + chr1_3:8815503-8815522 None:intergenic 45.0%
TATCTCTGAGCAAACATCGG+AGG + chr1_3:8815513-8815532 None:intergenic 45.0%
TGTCACCGAAACTGAGAGTA+AGG - chr1_3:8815544-8815563 Msa0102110:CDS 45.0%
! TTGGTTAGAAGGCATGCTGT+TGG - chr1_3:8815787-8815806 Msa0102110:CDS 45.0%
GCTCAGAAGTCACATTCAGA+TGG - chr1_3:8815868-8815887 Msa0102110:intron 45.0%
CTTGGAAATGGTTGGAGAGA+TGG - chr1_3:8816328-8816347 Msa0102110:CDS 45.0%
! TTTGGTTTCGTCCGACTGTT+CGG + chr1_3:8816406-8816425 None:intergenic 45.0%
! GCTTGCTTGAAAGTGTGAGT+TGG + chr1_3:8816544-8816563 None:intergenic 45.0%
!! TATGTAACCGTCTTTTCGGG+AGG + chr1_3:8816609-8816628 None:intergenic 45.0%
TTTGCTCGACCAGGATGTAT+CGG - chr1_3:8816902-8816921 Msa0102110:intron 45.0%
! TCAGGATCAGCATTTCTGGA+AGG + chr1_3:8816996-8817015 None:intergenic 45.0%
GATAGTACGGTACCACTTTC+AGG + chr1_3:8817014-8817033 None:intergenic 45.0%
ACCTGACAGATCAGAGACTT+TGG - chr1_3:8817055-8817074 Msa0102110:intron 45.0%
TCCAAAGTCTCTGATCTGTC+AGG + chr1_3:8817059-8817078 None:intergenic 45.0%
ACAAACTGAGACTGTTCTGC+AGG - chr1_3:8817307-8817326 Msa0102110:intron 45.0%
!! GAAGGTGTTCCTTGAGATTC+AGG + chr1_3:8817380-8817399 None:intergenic 45.0%
TCAAGGAACACCTTCAAGTC+AGG - chr1_3:8817385-8817404 Msa0102110:intron 45.0%
! TTCACCGAAACCTGACTTGA+AGG + chr1_3:8817398-8817417 None:intergenic 45.0%
ATTTGCATTCGCAGGAGACT+TGG + chr1_3:8817540-8817559 None:intergenic 45.0%
TTGCCTAAGGATCAGCTGAA+TGG - chr1_3:8817593-8817612 Msa0102110:intron 45.0%
! TGTGTAGCTTGCATGAAACG+GGG + chr1_3:8817707-8817726 None:intergenic 45.0%
ATCTGGACTTGATCTTGGAG+AGG + chr1_3:8817759-8817778 None:intergenic 45.0%
TGCACATCTGGACTTGATCT+TGG + chr1_3:8817764-8817783 None:intergenic 45.0%
ATGTCAGTGTCATGCACATC+TGG + chr1_3:8817776-8817795 None:intergenic 45.0%
GATAATGACTGTTCGACACG+CGG + chr1_3:8817851-8817870 None:intergenic 45.0%
TCATTATCTCCAGCTCTGCA+GGG - chr1_3:8817863-8817882 Msa0102110:five_prime_UTR 45.0%
AGGTTAATCACATGCGGTGG+TGG - chr1_3:8814406-8814425 Msa0102110:CDS 50.0%
! TTAATCACATGCGGTGGTGG+TGG - chr1_3:8814409-8814428 Msa0102110:CDS 50.0%
TGATCTCGTGGATCTAGGCT+CGG + chr1_3:8815084-8815103 None:intergenic 50.0%
CACCGAAACTGAGAGTAAGG+TGG - chr1_3:8815547-8815566 Msa0102110:CDS 50.0%
AAGTTGCAAGCTGCTGTTCG+TGG - chr1_3:8815760-8815779 Msa0102110:CDS 50.0%
AGTTGCAAGCTGCTGTTCGT+GGG - chr1_3:8815761-8815780 Msa0102110:CDS 50.0%
TTCGTGGGCACTTGGTTAGA+AGG - chr1_3:8815776-8815795 Msa0102110:CDS 50.0%
CTCGGATGGTAGAGGTGAAT+CGG + chr1_3:8816490-8816509 None:intergenic 50.0%
TCTTCATCCTCGGATGGTAG+AGG + chr1_3:8816498-8816517 None:intergenic 50.0%
GTCTTCTCTTCATCCTCGGA+TGG + chr1_3:8816504-8816523 None:intergenic 50.0%
GGCAGTCTTCTCTTCATCCT+CGG + chr1_3:8816508-8816527 None:intergenic 50.0%
TCAGACCAACTAGAGACCGA+GGG - chr1_3:8816771-8816790 Msa0102110:CDS 50.0%
TCTTTCCCTCGGTCTCTAGT+TGG + chr1_3:8816779-8816798 None:intergenic 50.0%
GTGACTCAACCGATACATCC+TGG + chr1_3:8816914-8816933 None:intergenic 50.0%
GAAACTGTTAATGGCTCCCG+TGG - chr1_3:8817200-8817219 Msa0102110:intron 50.0%
!! GCATGCTCTTTGGAGTTCTC+AGG + chr1_3:8817248-8817267 None:intergenic 50.0%
AGGCTCAACAGCATGCTCTT+TGG + chr1_3:8817258-8817277 None:intergenic 50.0%
TGGATCAAGCAGTAGACGCA+GGG - chr1_3:8817445-8817464 Msa0102110:intron 50.0%
!! TCAGGCTCAAGAGTGTCTGT+CGG - chr1_3:8817512-8817531 Msa0102110:intron 50.0%
! GGTTCTTGATCAGTGGGTTC+AGG + chr1_3:8817650-8817669 None:intergenic 50.0%
GCAAGCTACACAATCTGCCA+AGG - chr1_3:8817715-8817734 Msa0102110:exon 50.0%
CATTCCTTACCTGGTGCAAC+TGG - chr1_3:8817812-8817831 Msa0102110:five_prime_UTR 50.0%
CTTACCAGTTGCACCAGGTA+AGG + chr1_3:8817819-8817838 None:intergenic 50.0%
GTCATTATCTCCAGCTCTGC+AGG - chr1_3:8817862-8817881 Msa0102110:five_prime_UTR 50.0%
GAGCATGTCGTGCTCGTACA+AGG + chr1_3:8815852-8815871 None:intergenic 55.0%
CGATTCACCTCTACCATCCG+AGG - chr1_3:8816488-8816507 Msa0102110:CDS 55.0%
AGAGGCTCCTCCCGAAAAGA+CGG - chr1_3:8816599-8816618 Msa0102110:CDS 55.0%
! CTCGGTCTCTAGTTGGTCTG+AGG + chr1_3:8816772-8816791 None:intergenic 55.0%
CTCAGACCAACTAGAGACCG+AGG - chr1_3:8816770-8816789 Msa0102110:CDS 55.0%
TCAAATTCGGGTAGGCCGAG+TGG - chr1_3:8816879-8816898 Msa0102110:intron 55.0%
TCCTGGTCGAGCAAACCACT+CGG + chr1_3:8816897-8816916 None:intergenic 55.0%
CTGGATCAAGCAGTAGACGC+AGG - chr1_3:8817444-8817463 Msa0102110:intron 55.0%
ACCTGGTGCAACTGGTAAGC+AGG - chr1_3:8817820-8817839 Msa0102110:five_prime_UTR 55.0%
CCTGGTGCAACTGGTAAGCA+GGG - chr1_3:8817821-8817840 Msa0102110:five_prime_UTR 55.0%
TCGTGGATCTAGGCTCGGCA+TGG + chr1_3:8815079-8815098 None:intergenic 60.0%
AGCTGCTGTTCGTGGGCACT+TGG - chr1_3:8815768-8815787 Msa0102110:CDS 60.0%
!! AGACGCAGGGTACTGTCTGC+TGG - chr1_3:8817458-8817477 Msa0102110:intron 60.0%
CCCTGCTTACCAGTTGCACC+AGG + chr1_3:8817824-8817843 None:intergenic 60.0%
TCCAGCTCTGCAGGGCACAA+AGG - chr1_3:8817871-8817890 Msa0102110:five_prime_UTR 60.0%
CCAGCTCTGCAGGGCACAAA+GGG - chr1_3:8817872-8817891 Msa0102110:five_prime_UTR 60.0%
CTGCAGGGCACAAAGGGCAA+TGG - chr1_3:8817878-8817897 Msa0102110:five_prime_UTR 60.0%
!! GCCGAGTGGTTTGCTCGACC+AGG - chr1_3:8816893-8816912 Msa0102110:intron 65.0%
CCCTTTGTGCCCTGCAGAGC+TGG + chr1_3:8817875-8817894 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8814200 8817904 8814200 ID=Msa0102110;Name=Msa0102110
chr1_3 mRNA 8814200 8817904 8814200 ID=Msa0102110-mRNA-1;Parent=Msa0102110;Name=Msa0102110-mRNA-1;_AED=0.09;_eAED=0.09;_QI=182|0.66|0.42|1|0.83|0.71|7|0|766
chr1_3 exon 8814200 8815621 8814200 ID=Msa0102110-mRNA-1:exon:3539;Parent=Msa0102110-mRNA-1
chr1_3 exon 8815634 8815843 8815634 ID=Msa0102110-mRNA-1:exon:3538;Parent=Msa0102110-mRNA-1
chr1_3 exon 8815933 8816013 8815933 ID=Msa0102110-mRNA-1:exon:3537;Parent=Msa0102110-mRNA-1
chr1_3 exon 8816189 8816380 8816189 ID=Msa0102110-mRNA-1:exon:3536;Parent=Msa0102110-mRNA-1
chr1_3 exon 8816476 8816657 8816476 ID=Msa0102110-mRNA-1:exon:3535;Parent=Msa0102110-mRNA-1
chr1_3 exon 8816679 8816808 8816679 ID=Msa0102110-mRNA-1:exon:3534;Parent=Msa0102110-mRNA-1
chr1_3 exon 8817642 8817904 8817642 ID=Msa0102110-mRNA-1:exon:3533;Parent=Msa0102110-mRNA-1
chr1_3 five_prime_UTR 8817723 8817904 8817723 ID=Msa0102110-mRNA-1:five_prime_utr;Parent=Msa0102110-mRNA-1
chr1_3 CDS 8817642 8817722 8817642 ID=Msa0102110-mRNA-1:cds;Parent=Msa0102110-mRNA-1
chr1_3 CDS 8816679 8816808 8816679 ID=Msa0102110-mRNA-1:cds;Parent=Msa0102110-mRNA-1
chr1_3 CDS 8816476 8816657 8816476 ID=Msa0102110-mRNA-1:cds;Parent=Msa0102110-mRNA-1
chr1_3 CDS 8816189 8816380 8816189 ID=Msa0102110-mRNA-1:cds;Parent=Msa0102110-mRNA-1
chr1_3 CDS 8815933 8816013 8815933 ID=Msa0102110-mRNA-1:cds;Parent=Msa0102110-mRNA-1
chr1_3 CDS 8815634 8815843 8815634 ID=Msa0102110-mRNA-1:cds;Parent=Msa0102110-mRNA-1
chr1_3 CDS 8814200 8815621 8814200 ID=Msa0102110-mRNA-1:cds;Parent=Msa0102110-mRNA-1
Gene Sequence

>Msa0102110

ATGGTGAAATCTACTTCTTGTTTAAGGTTAATCACATGCGGTGGTGGTGGTGACAAAGAAGATCACCATGTTGTTTCTGAGGTCAAGGATTCTAATGATAAACGCGGTTGGAGTTTTCGGAAGAGATCTGCAAGGCATCGTGTGCTTAGCAATACTGTGATAACAACAGAGACCACATCTTCAGCAAATAAGGAGACTTCAGAATATCCAACTGAGCCTAATGTTGTTGAGAAGATTTGTACGACAGATTTCTCTAATGAGAAGCCACAGTTATCCTCCGATGTTTGCTCAGAGATACCAGAAACAATTGTCACCGAAACTGAGAGTAAGGTGGATGTCAATCCACCAGAATCTGCTGTGATAATCATCCAGGCTTCAATTAGAGGATATTTGGCTCGGAGAGCACTTCTAAAAAGTAAGAATGTAGTGAAGTTGCAAGCTGCTGTTCGTGGGCACTTGGTTAGAAGGCATGCTGTTGGAACATTGCGATGTGTTCAAGCTATTGCTAAAATGCAGCTCCTTGTACGAGCACGACATGCTCAGAAGTCACATTCAGATGGAAAAAATGATGACTCAAAAACTACGGATAATGAGCATTACACTGCTGAATCAAATGTGAAGCACACTTCTGTGGAAAAGCTTCTCAGCAATAAGTTTGCTTCTCAGCTGTTGGAATCAACACCAAAAAACAAACCTATCCATGTCAAATGTGATCCTTCTAAAGGTGATTCTGCTTGGAAATGGTTGGAGAGATGGATGTTTGTTTCGGCAAAAGATTCTGCAGAAGATAAAAAGCCAATTTGTACAACCGAACAGTCGGACGAAACCAAAGATAGCACTCATGCATCTCAATCGGAAACAGATATTCCATCTCAATTAGCCGATTCACCTCTACCATCCGAGGATGAAGAGAAGACTGCCACTTACTATGATACCAACTCACACTTTCAAGCAAGCCTCTCTTCATCTTCTCTAATAAATGATAACTTGGAAGAGGCTCCTCCCGAAAAGACGGTTACATATGATTCTAAAGTAACCTCCACTGAAATTGATTCTTTCCAAAATGAAATAATGGAATCAAATGCAAGTGTCGGACATGAGCCTAATTCTCCTCAGAATCAAGAAAGTGATGAACAGTACAAACAATCAACGAAAGCATTTGCCTCAGACCAACTAGAGACCGAGGGAAAGAAAATTACATTTGGATCAAGGAAGTTAAGCAATCCCTCATTTATTGCTGCTCAATCAAAATTTGAAGAGCTGAGTTCAAATTCAAATTCGGGTAGGCCGAGTGGTTTGCTCGACCAGGATGTATCGGTTGAGTCACAAGCAGATAGTGCATATATATCAAAAGAGTTCATTTCATCTGAGAATTCTATGCCCTATCCTTCCAGAAATGCTGATCCTGAAAGTGGTACCGTACTATCTATTTCTTCAACTCTTGATTCACCTGACAGATCAGAGACTTTGGAAATCGAGCACGATGCCAAAGATTTAGTAGAAGGGATAGTTAATCCTGAAAACAAGATTGATCATGGTGTTGAAGCAAATACTCCGACTTCTAATTTACCTATCTCTGATTCGGATCAATTAGAAACTGTTAATGGCTCCCGTGGCAATGTTGTTGATTCAGTGATGCCTGAGAACTCCAAAGAGCATGCTGTTGAGCCTGAGAAAATTGCATCTGACTTGTTTAGAGAACAAACTGAGACTGTTCTGCAGGATTTCACGTATTCTCAACAAGCTTCACCGGGAAGCTATATGACAATTCCTGAATCTCAAGGAACACCTTCAAGTCAGGTTTCGGTGAAACATAAAGAGAATAAAATCAACAAGACTGGATCAAGCAGTAGACGCAGGGTACTGTCTGCTGGTAACAAGTCTCCTGCTAATTCAAATCAAGATTCAGGCTCAAGAGTGTCTGTCGGTACCAAGTCTCCTGCGAATGCAAATCATGATTCAGGCTCAAGAGGTAGTAGAGAACAATTGCCTAAGGATCAGCTGAATGGAAAGAGACGCAATTCATTTGGCTCAATAAAACCTGAACCCACTGATCAAGAACCTACCAAAGATAATAGTAGTAGCAATAATACTCTTCCCCGTTTCATGCAAGCTACACAATCTGCCAAGGCCAAGATAAATGCAAATTCCTCTCCAAGATCAAGTCCAGATGTGCATGACACTGACATTAATATCAAGAAGAGACATTCCTTACCTGGTGCAACTGGTAAGCAGGGTTCTCCGCGTGTCGAACAGTCATTATCTCCAGCTCTGCAGGGCACAAAGGGCAATGGTTCA
Protein sequence

>Msa0102110

MVKSTSCLRLITCGGGGDKEDHHVVSEVKDSNDKRGWSFRKRSARHRVLSNTVITTETTSSANKETSEYPTEPNVVEKICTTDFSNEKPQLSSDVCSEIPETIVTETESKVDVNPPESAVIIIQASIRGYLARRALLKSKNVVKLQAAVRGHLVRRHAVGTLRCVQAIAKMQLLVRARHAQKSHSDGKNDDSKTTDNEHYTAESNVKHTSVEKLLSNKFASQLLESTPKNKPIHVKCDPSKGDSAWKWLERWMFVSAKDSAEDKKPICTTEQSDETKDSTHASQSETDIPSQLADSPLPSEDEEKTATYYDTNSHFQASLSSSSLINDNLEEAPPEKTVTYDSKVTSTEIDSFQNEIMESNASVGHEPNSPQNQESDEQYKQSTKAFASDQLETEGKKITFGSRKLSNPSFIAAQSKFEELSSNSNSGRPSGLLDQDVSVESQADSAYISKEFISSENSMPYPSRNADPESGTVLSISSTLDSPDRSETLEIEHDAKDLVEGIVNPENKIDHGVEANTPTSNLPISDSDQLETVNGSRGNVVDSVMPENSKEHAVEPEKIASDLFREQTETVLQDFTYSQQASPGSYMTIPESQGTPSSQVSVKHKENKINKTGSSSRRRVLSAGNKSPANSNQDSGSRVSVGTKSPANANHDSGSRGSREQLPKDQLNGKRRNSFGSIKPEPTDQEPTKDNSSSNNTLPRFMQATQSAKAKINANSSPRSSPDVHDTDINIKKRHSLPGATGKQGSPRVEQSLSPALQGTKGNGS