AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1040150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040150 MtrunA17_Chr7g0271411 90.323 310 25 2 1 310 1 305 1.03e-163 457
Msa1040150 MtrunA17_Chr1g0193131 56.388 227 64 10 42 240 279 498 2.60e-49 173
Msa1040150 MtrunA17_Chr5g0443331 57.037 135 55 2 137 271 86 217 2.24e-38 136
Msa1040150 MtrunA17_Chr3g0096451 63.551 107 36 1 139 245 93 196 2.77e-38 136
Msa1040150 MtrunA17_Chr2g0304061 62.069 87 32 1 161 247 158 243 1.12e-31 120
Msa1040150 MtrunA17_Chr8g0381081 46.903 113 52 3 139 246 34 143 6.18e-28 106
Msa1040150 MtrunA17_Chr1g0177171 40.667 150 80 4 102 246 347 492 1.25e-26 109
Msa1040150 MtrunA17_Chr4g0040911 49.153 118 47 3 161 275 37 144 2.52e-26 102
Msa1040150 MtrunA17_Chr8g0378621 37.209 172 90 4 136 302 339 497 1.08e-25 106
Msa1040150 MtrunA17_Chr8g0378361 51.042 96 45 2 159 253 28 122 1.25e-25 100
Msa1040150 MtrunA17_Chr5g0401301 41.667 144 72 4 105 244 279 414 1.54e-25 105
Msa1040150 MtrunA17_Chr4g0075031 51.613 93 44 1 154 245 375 467 5.22e-25 104
Msa1040150 MtrunA17_Chr8g0378371 54.545 88 37 2 160 247 32 116 3.95e-24 94.7
Msa1040150 MtrunA17_Chr3g0121271 38.931 131 69 3 148 277 349 469 3.83e-22 96.3
Msa1040150 MtrunA17_Chr8g0380231 59.155 71 29 0 168 238 24 94 4.54e-22 89.0
Msa1040150 MtrunA17_Chr8g0378381 50.562 89 38 3 160 245 31 116 5.30e-22 89.0
Msa1040150 MtrunA17_Chr1g0154991 47.706 109 46 5 147 252 8 108 7.01e-22 88.6
Msa1040150 MtrunA17_Chr5g0434591 42.056 107 61 1 154 259 353 459 1.51e-21 94.7
Msa1040150 MtrunA17_Chr5g0447651 49.412 85 42 1 161 244 30 114 1.70e-21 87.8
Msa1040150 MtrunA17_Chr5g0439251 47.253 91 47 1 154 243 375 465 4.32e-21 93.2
Msa1040150 MtrunA17_Chr3g0110371 43.299 97 54 1 154 249 354 450 5.27e-21 93.2
Msa1040150 MtrunA17_Chr4g0043511 44.340 106 57 2 160 264 419 523 2.36e-20 91.3
Msa1040150 MtrunA17_Chr4g0034901 43.860 114 54 3 143 248 352 463 2.37e-20 90.9
Msa1040150 MtrunA17_Chr3g0120401 45.977 87 45 2 161 246 157 242 3.75e-20 87.4
Msa1040150 MtrunA17_Chr5g0419121 47.368 95 46 3 156 247 17 110 5.32e-20 87.4
Msa1040150 MtrunA17_Chr8g0378401 50.602 83 35 3 160 239 31 110 1.99e-19 82.4
Msa1040150 MtrunA17_Chr1g0161011 44.118 102 55 2 154 254 354 454 2.19e-19 88.2
Msa1040150 MtrunA17_Chr4g0076131 41.379 87 50 1 160 245 27 113 4.45e-19 81.3
Msa1040150 MtrunA17_Chr4g0076141 44.304 79 43 1 161 238 13 91 6.67e-19 80.5
Msa1040150 MtrunA17_Chr6g0487261 40.541 111 61 4 136 244 347 454 2.64e-18 85.1
Msa1040150 MtrunA17_Chr4g0043151 47.253 91 45 3 161 249 21 110 2.82e-18 81.3
Msa1040150 MtrunA17_Chr1g0213651 44.706 85 45 2 161 244 276 359 4.61e-18 83.6
Msa1040150 MtrunA17_Chr4g0061401 44.944 89 46 3 157 244 20 106 6.87e-18 80.9
Msa1040150 MtrunA17_Chr8g0389741 32.394 142 85 3 136 271 348 484 9.41e-17 80.5
Msa1040150 MtrunA17_Chr2g0313891 44.186 86 45 2 160 244 29 112 1.87e-16 73.9
Msa1040150 MtrunA17_Chr3g0144531 39.815 108 59 3 144 248 354 458 2.79e-16 79.0
Msa1040150 MtrunA17_Chr7g0234821 38.983 118 67 3 133 248 348 462 2.87e-16 79.0
Msa1040150 MtrunA17_Chr8g0339191 36.082 97 61 1 152 247 365 461 3.98e-16 78.6
Msa1040150 MtrunA17_Chr7g0223961 41.379 87 45 3 159 242 363 446 1.79e-13 70.5
Msa1040150 MtrunA17_Chr2g0306311 42.857 98 49 5 160 253 398 492 4.02e-13 69.7
Msa1040150 MtrunA17_Chr3g0129341 35.714 112 62 5 141 245 348 456 9.38e-13 68.6
Msa1040150 MtrunA17_Chr4g0062771 34.483 116 71 4 160 273 373 485 2.11e-12 67.4
Msa1040150 MtrunA17_Chr4g0046311 36.905 84 52 1 157 239 369 452 1.17e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040150 AT1G09460.1 59.375 128 48 2 121 248 99 222 2.53e-37 135
Msa1040150 AT2G30933.1 61.798 89 34 0 160 248 81 169 7.64e-34 124
Msa1040150 AT1G29380.3 58.889 90 37 0 160 249 147 236 1.03e-32 122
Msa1040150 AT1G29380.1 58.824 85 35 0 160 244 147 231 2.34e-31 119
Msa1040150 AT2G30933.2 62.025 79 30 0 160 238 81 159 2.20e-30 112
Msa1040150 AT2G30933.3 62.025 79 30 0 160 238 81 159 2.20e-30 112
Msa1040150 AT1G29380.4 58.750 80 33 0 160 239 147 226 3.91e-29 111
Msa1040150 AT1G29380.2 58.750 80 33 0 160 239 147 226 3.91e-29 111
Msa1040150 AT1G11820.2 46.825 126 63 2 148 269 368 493 4.67e-28 114
Msa1040150 AT4G05430.3 45.133 113 57 2 141 248 24 136 3.58e-27 104
Msa1040150 AT4G05430.1 49.462 93 46 1 157 248 19 111 6.61e-27 103
Msa1040150 AT3G58100.1 46.218 119 62 2 161 278 41 158 1.54e-26 103
Msa1040150 AT3G58100.2 46.218 119 62 2 161 278 117 234 4.65e-26 104
Msa1040150 AT4G05430.2 47.115 104 50 2 141 239 24 127 3.34e-25 98.2
Msa1040150 AT1G66250.1 39.865 148 76 5 154 297 361 499 3.58e-25 105
Msa1040150 AT2G01630.1 44.340 106 58 1 154 258 353 458 5.31e-25 105
Msa1040150 AT4G26830.1 43.590 117 53 2 131 246 349 453 7.99e-25 104
Msa1040150 AT4G26830.2 43.590 117 53 2 131 246 353 457 1.05e-24 103
Msa1040150 AT5G55180.1 52.222 90 42 1 158 246 369 458 1.83e-24 103
Msa1040150 AT2G05790.1 33.750 240 138 8 23 246 236 470 1.85e-24 103
Msa1040150 AT5G35740.1 47.368 95 46 3 154 245 23 116 9.59e-24 94.4
Msa1040150 AT4G13600.1 44.275 131 55 5 161 274 61 190 5.84e-23 95.5
Msa1040150 AT1G18650.1 46.237 93 48 2 157 248 17 108 2.60e-22 92.4
Msa1040150 AT1G11820.3 50.538 93 45 1 148 239 368 460 2.67e-22 97.1
Msa1040150 AT1G18650.2 46.237 93 48 2 157 248 17 108 3.29e-22 90.5
Msa1040150 AT5G55180.2 53.012 83 38 1 158 239 369 451 1.23e-21 95.1
Msa1040150 AT5G67460.1 38.571 140 70 5 113 244 246 377 2.33e-21 93.6
Msa1040150 AT4G34480.3 47.674 86 43 2 161 245 253 337 4.74e-21 92.8
Msa1040150 AT4G34480.1 47.674 86 43 2 161 245 364 448 6.59e-21 93.2
Msa1040150 AT2G01630.3 46.512 86 45 1 154 238 353 438 3.35e-20 90.9
Msa1040150 AT2G16230.1 45.455 99 51 3 161 258 366 462 6.12e-20 90.5
Msa1040150 AT5G67460.2 38.519 135 67 5 113 239 246 372 7.23e-20 89.4
Msa1040150 AT5G24318.3 41.121 107 57 3 141 246 217 318 1.14e-19 88.2
Msa1040150 AT5G24318.1 41.121 107 57 3 141 246 356 457 1.68e-19 89.0
Msa1040150 AT3G55430.1 42.553 94 52 2 152 244 357 449 1.83e-19 88.6
Msa1040150 AT5G63240.1 38.393 112 62 4 139 246 20 128 9.46e-19 81.3
Msa1040150 AT5G63250.1 40.816 98 53 3 153 246 34 130 1.29e-18 80.9
Msa1040150 AT1G66870.1 38.298 94 55 2 153 244 18 110 2.81e-18 79.3
Msa1040150 AT1G66870.2 38.298 94 55 2 153 244 45 137 3.71e-18 79.7
Msa1040150 AT2G04910.2 40.860 93 54 1 154 245 8 100 3.90e-18 78.6
Msa1040150 AT1G79480.1 44.706 85 45 2 161 244 311 394 5.59e-18 84.0
Msa1040150 AT1G79480.2 44.706 85 45 2 161 244 310 393 5.67e-18 84.0
Msa1040150 AT5G24318.2 42.424 99 51 3 141 238 356 449 1.08e-17 83.6
Msa1040150 AT1G66852.1 34.783 92 60 0 153 244 18 109 1.26e-17 77.4
Msa1040150 AT5G63225.1 41.860 86 48 2 160 244 24 108 1.66e-17 77.4
Msa1040150 AT2G43660.2 41.758 91 52 1 159 248 33 123 3.40e-17 76.6
Msa1040150 AT4G16165.1 38.710 93 56 1 153 244 18 110 3.56e-17 76.3
Msa1040150 AT2G43660.1 41.758 91 52 1 159 248 32 122 3.59e-17 76.6
Msa1040150 AT2G39640.1 35.246 122 68 3 136 247 426 546 6.34e-17 81.6
Msa1040150 AT2G39640.1 40.659 91 52 2 153 242 351 440 1.77e-14 74.3
Msa1040150 AT2G43670.1 40.426 94 53 2 153 245 27 118 8.95e-17 75.5
Msa1040150 AT1G69295.1 45.349 86 44 3 157 241 17 100 9.06e-17 78.2
Msa1040150 AT4G09465.1 40.217 92 53 2 156 246 26 116 9.95e-17 75.5
Msa1040150 AT4G09464.1 40.217 92 53 2 156 246 26 116 1.15e-16 75.1
Msa1040150 AT4G09467.1 40.217 92 53 2 156 246 26 116 1.15e-16 75.1
Msa1040150 AT1G66855.1 39.535 86 51 1 160 244 25 110 1.40e-16 74.7
Msa1040150 AT4G09462.1 40.217 92 53 2 156 246 24 114 1.54e-16 74.7
Msa1040150 AT5G08000.2 48.387 93 46 2 154 245 33 124 1.65e-16 77.4
Msa1040150 AT5G56590.1 30.556 144 84 3 161 303 369 497 1.70e-16 80.1
Msa1040150 AT3G23770.1 39.048 105 60 2 145 248 374 475 1.84e-16 80.1
Msa1040150 AT2G04910.1 41.379 87 50 1 154 239 8 94 2.46e-16 74.3
Msa1040150 AT1G69295.2 45.349 86 44 3 157 241 13 96 2.88e-16 76.6
Msa1040150 AT4G09466.1 40.217 92 53 2 156 246 26 116 3.18e-16 73.9
Msa1040150 AT4G09090.1 42.529 87 48 2 161 246 31 116 5.07e-16 73.6
Msa1040150 AT5G61130.1 43.333 90 49 2 157 245 17 105 5.38e-16 75.5
Msa1040150 AT3G13560.4 40.625 96 56 1 161 255 362 457 7.48e-16 78.2
Msa1040150 AT3G13560.1 40.625 96 56 1 161 255 362 457 7.48e-16 78.2
Msa1040150 AT3G13560.2 40.625 96 56 1 161 255 362 457 7.48e-16 78.2
Msa1040150 AT3G13560.5 40.625 96 56 1 161 255 362 457 7.48e-16 78.2
Msa1040150 AT3G13560.3 40.625 96 56 1 161 255 362 457 7.48e-16 78.2
Msa1040150 AT4G29360.2 35.185 108 69 1 160 266 400 507 1.22e-15 77.8
Msa1040150 AT4G29360.1 35.185 108 69 1 160 266 390 497 1.64e-15 77.4
Msa1040150 AT5G53600.1 39.785 93 53 2 153 244 21 111 1.77e-15 71.6
Msa1040150 AT5G08000.1 48.276 87 43 2 160 245 20 105 1.81e-15 73.9
Msa1040150 AT2G42930.1 39.241 79 47 1 161 239 40 117 9.22e-15 70.5
Msa1040150 AT5G63230.1 37.209 86 52 2 160 244 25 109 9.61e-15 69.7
Msa1040150 AT1G78520.1 42.529 87 47 2 160 245 31 115 1.09e-14 69.7
Msa1040150 AT4G14080.1 35.897 117 67 3 137 248 364 477 1.50e-14 74.3
Msa1040150 AT1G26450.1 45.455 77 39 3 157 232 17 91 1.55e-14 71.2
Msa1040150 AT2G03505.3 36.458 96 57 3 157 249 17 111 3.50e-14 68.6
Msa1040150 AT2G03505.4 36.170 94 56 3 157 247 17 109 4.25e-14 69.7
Msa1040150 AT2G03505.1 36.170 94 56 3 157 247 17 109 4.25e-14 69.7
Msa1040150 AT2G03505.2 36.170 94 56 3 157 247 17 109 4.25e-14 69.7
Msa1040150 AT5G53610.1 41.176 85 47 2 161 244 28 110 9.41e-14 67.0
Msa1040150 AT3G07320.1 39.785 93 55 1 157 248 367 459 1.14e-13 71.6
Msa1040150 AT1G13830.2 43.373 83 40 4 158 238 32 109 8.35e-13 67.0
Msa1040150 AT1G13830.1 43.750 80 38 4 161 238 21 95 1.72e-12 65.9
Msa1040150 AT3G04010.1 41.935 93 48 4 160 249 373 462 8.34e-12 66.2
Msa1040150 AT4G17180.1 38.372 86 49 3 160 244 358 440 1.07e-11 65.9
Msa1040150 AT5G58090.1 41.573 89 46 4 160 245 361 446 1.28e-11 65.5
Msa1040150 AT2G29735.1 35.870 92 55 3 156 244 26 116 8.26e-11 58.9

Find 130 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAAAGAAATTGTGTTTC+TGG 0.151251 7_1:-77513276 None:intergenic
ACATCATCTCCAGTAGGTTT+TGG 0.266537 7_1:+77515096 Msa1040150:CDS
GCTGGATTTGTTGGTGATAA+TGG 0.267994 7_1:-77513691 None:intergenic
TAGAAAGACAGTAGAGTAGT+AGG 0.271212 7_1:+77515289 Msa1040150:three_prime_UTR
TTTGCTAAGCTGCATGGTTC+TGG 0.314068 7_1:+77515167 Msa1040150:CDS
AGTCCTCCATCTTCTTCTTC+AGG 0.320635 7_1:+77513847 Msa1040150:CDS
TTCAGGAACTGGAGTAGTTT+AGG 0.325211 7_1:+77515422 Msa1040150:three_prime_UTR
TGCATCTTCCCATCAGCTTC+AGG 0.344512 7_1:+77514217 Msa1040150:CDS
TTGTAACAGATCACAAGATT+TGG 0.357056 7_1:+77513536 Msa1040150:CDS
TAGAGCATGGAAGCTAACTA+TGG 0.359132 7_1:-77515225 None:intergenic
AGTGTAGATTGTGGTGTTCC+AGG 0.362624 7_1:-77513892 None:intergenic
AATATGTTTCTTTGATACTA+AGG 0.363586 7_1:-77513053 None:intergenic
TCTTGGCTATAATCAGATTC+AGG 0.369696 7_1:+77515405 Msa1040150:three_prime_UTR
GGCACAGGCACAGGCACATC+CGG 0.370939 7_1:+77514256 Msa1040150:CDS
GCTTACAAATCCAACATCTT+AGG 0.371314 7_1:+77515703 Msa1040150:three_prime_UTR
CCACCACCATCACCATTATC+AGG 0.376324 7_1:+77513778 Msa1040150:CDS
GTTCCTGTTCCTCCTGATAA+TGG 0.379708 7_1:-77513790 None:intergenic
ACCTTTATACCTTTAGTTCA+AGG 0.379755 7_1:+77513144 Msa1040150:five_prime_UTR
GGTGAATTTGCTGGATTTGT+TGG 0.382630 7_1:-77513700 None:intergenic
CATGGTTCTGGTGACATTAT+TGG 0.382811 7_1:+77515179 Msa1040150:CDS
GCTGCAACAAGCTGTGACTT+TGG 0.388632 7_1:+77514054 Msa1040150:CDS
TTGGATTCCTCTCATTCAAC+TGG 0.389358 7_1:+77515135 Msa1040150:CDS
TCCTTGAACTAAAGGTATAA+AGG 0.392920 7_1:-77513145 None:intergenic
GGAACTGTTGGTGGTGTAAC+AGG 0.393025 7_1:-77513727 None:intergenic
AGTGTGTGCATTGTTTGTTT+TGG 0.397338 7_1:+77515459 Msa1040150:three_prime_UTR
TTGTAAAGAATATAGGATAT+TGG 0.399613 7_1:-77515859 None:intergenic
AAGGCCTATCCTTGAACTAA+AGG 0.401117 7_1:-77513153 None:intergenic
TGTGTTTCTGGAATTTAGAA+TGG 0.403661 7_1:-77513264 None:intergenic
AGCAACAAATTTACTGTCAA+TGG 0.409812 7_1:-77515888 None:intergenic
CATATGTAAATCAACAACTA+TGG 0.412229 7_1:+77515630 Msa1040150:three_prime_UTR
CTTCTTCTTCAGGAGGTAGC+TGG 0.414888 7_1:+77513857 Msa1040150:CDS
TACAAAGAAAGAAACAATAA+AGG 0.417834 7_1:+77512969 Msa1040150:five_prime_UTR
GACTATGCTTGTGGAACAAA+AGG 0.417962 7_1:+77513928 Msa1040150:CDS
CTATAATCAGATTCAGGAAC+TGG 0.422203 7_1:+77515411 Msa1040150:three_prime_UTR
GCTGGCACAGGCACAGGCAC+AGG 0.425917 7_1:+77514247 Msa1040150:CDS
TTCACTGGTGTTGTTCCTCC+TGG 0.427069 7_1:-77513748 None:intergenic
TGACAGTGACAGCGTTGAAA+TGG 0.428428 7_1:-77515813 None:intergenic
GAACTAAAGGTATAAAGGTT+AGG 0.428488 7_1:-77513140 None:intergenic
GATGCAAGTAGAAGCTTCAT+TGG 0.437577 7_1:-77513303 None:intergenic
GTTACACCACCAACAGTTCC+AGG 0.439114 7_1:+77513730 Msa1040150:CDS
ACAGGTACTGGTGAATTTGC+TGG 0.439151 7_1:-77513709 None:intergenic
AGAAATAACTGAGGACCTCT+TGG 0.442274 7_1:+77515388 Msa1040150:three_prime_UTR
AAGTCACAGCTTGTTGCAGC+AGG 0.460540 7_1:-77514051 None:intergenic
GTTGTTCCTCCTGGAACTGT+TGG 0.460619 7_1:-77513739 None:intergenic
GGTGTTGCACCTGGATTTGT+TGG 0.466876 7_1:-77513634 None:intergenic
AAACACAATTTCTTTCATCA+TGG 0.468138 7_1:+77513280 Msa1040150:exon
GGAATTTAGAATGGAGCTGT+TGG 0.469798 7_1:-77513255 None:intergenic
ACAGCTGGTGGAGTAGTAGA+AGG 0.473175 7_1:-77513667 None:intergenic
AAAATAAGTCATGTGGGTAC+TGG 0.473219 7_1:+77515513 Msa1040150:three_prime_UTR
AGAAAGACAGTAGAGTAGTA+GGG 0.474208 7_1:+77515290 Msa1040150:three_prime_UTR
AGAAGAAAATGAGAAAAGAT+AGG 0.477075 7_1:-77513331 None:intergenic
GGAGGAGCTGGCACAGGCAC+AGG 0.480114 7_1:+77514241 Msa1040150:CDS
CAGTGATGATTGTTGGTGAT+GGG 0.480237 7_1:-77513579 None:intergenic
TCTGAATTTGCGAAAATGAA+AGG 0.480451 7_1:-77515762 None:intergenic
AGCTGGTGTGTGGCTAAACC+TGG 0.480971 7_1:+77513874 Msa1040150:CDS
GTTCCTCCTGGAACTGTTGG+TGG 0.482015 7_1:-77513736 None:intergenic
TGGGCCGCAAAGCTCTCCAT+TGG 0.483468 7_1:+77515116 Msa1040150:CDS
TCACCATTATCAGGAGGAAC+AGG 0.487525 7_1:+77513787 Msa1040150:CDS
TTCCCATCAGCTTCAGGAGG+AGG 0.492744 7_1:+77514223 Msa1040150:CDS
TCAGCTTCAGGAGGAGGAGC+TGG 0.502344 7_1:+77514229 Msa1040150:CDS
ACTATGGTGTTGGTAAAACT+TGG 0.503068 7_1:+77515646 Msa1040150:three_prime_UTR
CTTTGCGGCCCAAAACCTAC+TGG 0.504420 7_1:-77515105 None:intergenic
CAACAAGCTGTGACTTTGGA+GGG 0.506706 7_1:+77514058 Msa1040150:CDS
ATCTACACTTCAAACAGCAT+TGG 0.509235 7_1:+77513906 Msa1040150:CDS
AGAAATAGTTGAAAATGCAT+TGG 0.517953 7_1:-77513461 None:intergenic
AAGCTTGAGTAAACAGATCA+AGG 0.518696 7_1:-77515344 None:intergenic
GATGGAGGACTTGTGCTTGA+AGG 0.519243 7_1:-77513835 None:intergenic
GTAAAATCGTAGTGGTCTGA+TGG 0.520816 7_1:-77515727 None:intergenic
TCAGGAGGAGGAGCTGGCAC+AGG 0.520850 7_1:+77514235 Msa1040150:CDS
GAGACCTTTGCTAAGCTGCA+TGG 0.522316 7_1:+77515161 Msa1040150:CDS
TATACCTTTAGTTCAAGGAT+AGG 0.525984 7_1:+77513149 Msa1040150:five_prime_UTR
GAAGGAACAGTGATGATTGT+TGG 0.527796 7_1:-77513586 None:intergenic
GCAACAAGCTGTGACTTTGG+AGG 0.530607 7_1:+77514057 Msa1040150:CDS
TCATTGTACTAACTAGTAGA+TGG 0.530763 7_1:+77515547 Msa1040150:three_prime_UTR
GAAGGTGGAGGATTTGTGAC+AGG 0.530909 7_1:-77513817 None:intergenic
TGTTATACAATTCTACAAGC+AGG 0.531967 7_1:+77515264 Msa1040150:three_prime_UTR
TAAATCAACAACTATGGTGT+TGG 0.532644 7_1:+77515636 Msa1040150:three_prime_UTR
GTTGGAGAAACTGTTGTGAC+AGG 0.533113 7_1:-77513616 None:intergenic
GAATCCAATGGAGAGCTTTG+CGG 0.535900 7_1:-77515120 None:intergenic
CCTGATAATGGTGATGGTGG+TGG 0.538366 7_1:-77513778 None:intergenic
CTCCTCCTCCTGAAGCTGAT+GGG 0.539809 7_1:-77514225 None:intergenic
TGAAGCTGATGGGAAGATGC+AGG 0.543799 7_1:-77514215 None:intergenic
ATTCAAGAAAATAAGTCATG+TGG 0.550923 7_1:+77515506 Msa1040150:three_prime_UTR
CTACCTCCTGAAGAAGAAGA+TGG 0.552545 7_1:-77513853 None:intergenic
ACAGTGATGATTGTTGGTGA+TGG 0.553424 7_1:-77513580 None:intergenic
GTTCCTCCTGATAATGGTGA+TGG 0.553903 7_1:-77513784 None:intergenic
GCTCCTCCTCCTGAAGCTGA+TGG 0.558816 7_1:-77514226 None:intergenic
GGACTTGTGCTTGAAGGTGG+AGG 0.559600 7_1:-77513829 None:intergenic
GTTGGTGATAATGGAACAGC+TGG 0.559840 7_1:-77513682 None:intergenic
GTAGTAGAAGGAACTGTGAC+AGG 0.561662 7_1:-77513655 None:intergenic
CAGGCACAGGCACATCCGGC+GGG 0.564968 7_1:+77514260 Msa1040150:CDS
AGAGTAGTAGGGAGAGTTTG+TGG 0.566599 7_1:+77515301 Msa1040150:three_prime_UTR
ACAGTTTCTCCAACAAATCC+AGG 0.567466 7_1:+77513625 Msa1040150:CDS
TTCAGGAGGTAGCTGGTGTG+TGG 0.575773 7_1:+77513864 Msa1040150:CDS
TTCAAGAAAATAAGTCATGT+GGG 0.579136 7_1:+77515507 Msa1040150:three_prime_UTR
TACAGCGAGGAGATAGAGCA+TGG 0.583522 7_1:-77515238 None:intergenic
GTTGGTGGTGTAACAGGTAC+TGG 0.587227 7_1:-77513721 None:intergenic
ACTGTGACAGGTGTTGCACC+TGG 0.594459 7_1:-77513643 None:intergenic
GTTGTGACAGGATTGGTTGA+AGG 0.600451 7_1:-77513604 None:intergenic
ACAGCATTGGACTATGCTTG+TGG 0.604056 7_1:+77513919 Msa1040150:CDS
CCTCCATCTTCTTCTTCAGG+AGG 0.605110 7_1:+77513850 Msa1040150:CDS
GTCTGATGGACCTAAGATGT+TGG 0.605429 7_1:-77515713 None:intergenic
AACAAGCTGTGACTTTGGAG+GGG 0.609446 7_1:+77514059 Msa1040150:CDS
AGAGCATGGAAGCTAACTAT+GGG 0.609588 7_1:-77515224 None:intergenic
AGAAACTGTTGTGACAGGAT+TGG 0.611206 7_1:-77513611 None:intergenic
CCTCCTGATAATGGTGATGG+TGG 0.614026 7_1:-77513781 None:intergenic
TTATTGGTCAGTGGAAGACT+CGG 0.614232 7_1:+77515195 Msa1040150:CDS
TGTTGAATGCAAAAGAAGCA+TGG 0.614920 7_1:-77514011 None:intergenic
GATTGTAACAGCTACCACCT+TGG 0.617114 7_1:-77513972 None:intergenic
GTTGAATGAGAGGAATCCAA+TGG 0.618258 7_1:-77515132 None:intergenic
CTGGTGACATTATTGGTCAG+TGG 0.619927 7_1:+77515186 Msa1040150:CDS
AGAACCATGCAGCTTAGCAA+AGG 0.620135 7_1:-77515165 None:intergenic
TCTCAGACCAGTTGAATGAG+AGG 0.621991 7_1:-77515142 None:intergenic
ACAGGCACAGGCACATCCGG+CGG 0.622496 7_1:+77514259 Msa1040150:CDS
GGAGGACTTGTGCTTGAAGG+TGG 0.626099 7_1:-77513832 None:intergenic
ATCTTCCCATCAGCTTCAGG+AGG 0.632762 7_1:+77514220 Msa1040150:CDS
GGTGATAATGGAACAGCTGG+TGG 0.636040 7_1:-77513679 None:intergenic
GGTGGTGGATAAGAATTCAC+TGG 0.638656 7_1:-77513763 None:intergenic
GGTACTACATCATCTCCAGT+AGG 0.642872 7_1:+77515090 Msa1040150:CDS
ACTAGGATTAGTGCTAGTAA+TGG 0.644779 7_1:-77514088 None:intergenic
TGAATCTGATTATAGCCAAG+AGG 0.657778 7_1:-77515403 None:intergenic
ATGTAAAAGTAAAATCGTAG+TGG 0.671959 7_1:-77515735 None:intergenic
GATTGTTCACAAATAAACCA+AGG 0.679441 7_1:+77513955 Msa1040150:CDS
CCTCCTGAAGAAGAAGATGG+AGG 0.682773 7_1:-77513850 None:intergenic
CCACCATCACCATTATCAGG+AGG 0.700034 7_1:+77513781 Msa1040150:CDS
TTCAACAGCAGAAATAACTG+AGG 0.709826 7_1:+77515379 Msa1040150:three_prime_UTR
TGTTCACAAATAAACCAAGG+TGG 0.741309 7_1:+77513958 Msa1040150:CDS
GCTGTTTGAAGTGTAGATTG+TGG 0.741949 7_1:-77513901 None:intergenic
TTGTATAACAAACTACAGCG+AGG 0.756170 7_1:-77515251 None:intergenic
ACACCACCAACAGTTCCAGG+AGG 0.766003 7_1:+77513733 Msa1040150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTGTTTTAGAAATTTTA+AGG + chr7_1:77514412-77514431 Msa1040150:intron 15.0%
!!! TTTGATTTGATTTTATCTTT+TGG - chr7_1:77514611-77514630 None:intergenic 15.0%
!!! TTTTCAACTTATTTTCATAA+GGG - chr7_1:77514868-77514887 None:intergenic 15.0%
!! TACAAAGAAAGAAACAATAA+AGG + chr7_1:77512969-77512988 Msa1040150:five_prime_UTR 20.0%
!! AATATGTTTCTTTGATACTA+AGG - chr7_1:77513056-77513075 None:intergenic 20.0%
!!! CATGACAGAAATTTTTTTAA+AGG - chr7_1:77513175-77513194 None:intergenic 20.0%
!! TGTAAAAATAGCATTAAACA+AGG - chr7_1:77513406-77513425 None:intergenic 20.0%
!! AAACTATTATAGATCTTACT+AGG - chr7_1:77514108-77514127 None:intergenic 20.0%
!! CAAGCATAATATGAAAAATT+AGG - chr7_1:77514136-77514155 None:intergenic 20.0%
!! TTACTCAATTCAAATATCTA+CGG + chr7_1:77514356-77514375 Msa1040150:intron 20.0%
!!! TTACAAAAAAGACATTGATT+AGG - chr7_1:77514438-77514457 None:intergenic 20.0%
!! TAAGCTATAAGCTTAAAAAT+GGG - chr7_1:77514691-77514710 None:intergenic 20.0%
!! ATAAGCTATAAGCTTAAAAA+TGG - chr7_1:77514692-77514711 None:intergenic 20.0%
!!! ATATCTAAAACTAGCTTATA+GGG - chr7_1:77514804-77514823 None:intergenic 20.0%
!!! AATATCTAAAACTAGCTTAT+AGG - chr7_1:77514805-77514824 None:intergenic 20.0%
!!! GTTTTCAACTTATTTTCATA+AGG - chr7_1:77514869-77514888 None:intergenic 20.0%
!!! AATAAGTTGAAAACAACTTA+TGG + chr7_1:77514875-77514894 Msa1040150:intron 20.0%
!! TTGTAAAGAATATAGGATAT+TGG - chr7_1:77515862-77515881 None:intergenic 20.0%
!!! GCAATTTTTGTAAAGAATAT+AGG - chr7_1:77515869-77515888 None:intergenic 20.0%
!! ATTTTTCTTCTTTGTGCAAA+TGG + chr7_1:77512999-77513018 Msa1040150:five_prime_UTR 25.0%
!! TGATACTAAGGAAATGTTTT+TGG - chr7_1:77513044-77513063 None:intergenic 25.0%
! AAACACAATTTCTTTCATCA+TGG + chr7_1:77513280-77513299 Msa1040150:exon 25.0%
! AGAAGAAAATGAGAAAAGAT+AGG - chr7_1:77513334-77513353 None:intergenic 25.0%
! AGAAATAGTTGAAAATGCAT+TGG - chr7_1:77513464-77513483 None:intergenic 25.0%
!! AATGCATTTTCAACTATTTC+TGG + chr7_1:77513463-77513482 Msa1040150:CDS 25.0%
!!! AGTATCTTATTGGCTTAAAA+AGG - chr7_1:77514337-77514356 None:intergenic 25.0%
! GAATTGAGTAAGTATCTTAT+TGG - chr7_1:77514347-77514366 None:intergenic 25.0%
!!! GAAATGAGAACTTTGAAATA+TGG + chr7_1:77514475-77514494 Msa1040150:intron 25.0%
!!! AAGTTGTTTTCACTTTTCAT+AGG + chr7_1:77514650-77514669 Msa1040150:intron 25.0%
!!! AGTTGTTTTCACTTTTCATA+GGG + chr7_1:77514651-77514670 Msa1040150:intron 25.0%
!! TATCTAAAACTAGCTTATAG+GGG - chr7_1:77514803-77514822 None:intergenic 25.0%
! ACTAAGCTTAATACATCAAT+AGG + chr7_1:77515012-77515031 Msa1040150:intron 25.0%
! ATTCAAGAAAATAAGTCATG+TGG + chr7_1:77515506-77515525 Msa1040150:three_prime_UTR 25.0%
! TTCAAGAAAATAAGTCATGT+GGG + chr7_1:77515507-77515526 Msa1040150:three_prime_UTR 25.0%
! CATATGTAAATCAACAACTA+TGG + chr7_1:77515630-77515649 Msa1040150:three_prime_UTR 25.0%
! ATGTAAAAGTAAAATCGTAG+TGG - chr7_1:77515738-77515757 None:intergenic 25.0%
! GAACTAAAGGTATAAAGGTT+AGG - chr7_1:77513143-77513162 None:intergenic 30.0%
! ACCTTTATACCTTTAGTTCA+AGG + chr7_1:77513144-77513163 Msa1040150:five_prime_UTR 30.0%
! TCCTTGAACTAAAGGTATAA+AGG - chr7_1:77513148-77513167 None:intergenic 30.0%
! TATACCTTTAGTTCAAGGAT+AGG + chr7_1:77513149-77513168 Msa1040150:five_prime_UTR 30.0%
!! TGTGTTTCTGGAATTTAGAA+TGG - chr7_1:77513267-77513286 None:intergenic 30.0%
GATGAAAGAAATTGTGTTTC+TGG - chr7_1:77513279-77513298 None:intergenic 30.0%
! TTTCTCATTTTCTTCTGTTC+TGG + chr7_1:77513338-77513357 Msa1040150:CDS 30.0%
!! GCTACTTTCAAATTCTTTTC+AGG + chr7_1:77513436-77513455 Msa1040150:intron 30.0%
TTGTAACAGATCACAAGATT+TGG + chr7_1:77513536-77513555 Msa1040150:CDS 30.0%
GATTGTTCACAAATAAACCA+AGG + chr7_1:77513955-77513974 Msa1040150:CDS 30.0%
!!! CTCTTTTTTGAATTGTGACT+AGG + chr7_1:77514184-77514203 Msa1040150:intron 30.0%
CAAAGTTCTCATTTCATCTA+AGG - chr7_1:77514470-77514489 None:intergenic 30.0%
AGCATAATTTAGACCTTGTT+TGG + chr7_1:77514512-77514531 Msa1040150:intron 30.0%
TTAAGCTGTATATCCAAACA+AGG - chr7_1:77514528-77514547 None:intergenic 30.0%
TTGACTAAAAAAGACCAGTT+TGG + chr7_1:77514727-77514746 Msa1040150:intron 30.0%
!!! TTCTGAAACTGTTTTAGACA+TGG - chr7_1:77514901-77514920 None:intergenic 30.0%
GCTTAATACATCAATAGGTA+TGG + chr7_1:77515017-77515036 Msa1040150:intron 30.0%
TGTTATACAATTCTACAAGC+AGG + chr7_1:77515264-77515283 Msa1040150:three_prime_UTR 30.0%
TCATTGTACTAACTAGTAGA+TGG + chr7_1:77515547-77515566 Msa1040150:three_prime_UTR 30.0%
TAAATCAACAACTATGGTGT+TGG + chr7_1:77515636-77515655 Msa1040150:three_prime_UTR 30.0%
TCTGAATTTGCGAAAATGAA+AGG - chr7_1:77515765-77515784 None:intergenic 30.0%
!!! TTGAGATCTTGCTTTTTGGA+AGG - chr7_1:77513498-77513517 None:intergenic 35.0%
!!! GACTTTGAGATCTTGCTTTT+TGG - chr7_1:77513502-77513521 None:intergenic 35.0%
ATCTACACTTCAAACAGCAT+TGG + chr7_1:77513906-77513925 Msa1040150:CDS 35.0%
TGTTCACAAATAAACCAAGG+TGG + chr7_1:77513958-77513977 Msa1040150:CDS 35.0%
!!! GCATGGTTTTGAAGTGAATT+TGG - chr7_1:77513997-77514016 None:intergenic 35.0%
TGTTGAATGCAAAAGAAGCA+TGG - chr7_1:77514014-77514033 None:intergenic 35.0%
! ACTAGGATTAGTGCTAGTAA+TGG - chr7_1:77514091-77514110 None:intergenic 35.0%
TTTGAATTGTGACTAGGTTC+TGG + chr7_1:77514190-77514209 Msa1040150:intron 35.0%
TAATGAAAGCTTTCCCTTCA+CGG - chr7_1:77514296-77514315 None:intergenic 35.0%
! CATTTCATCTAAGGTAGGTT+TGG - chr7_1:77514461-77514480 None:intergenic 35.0%
! GTTCTCATTTCATCTAAGGT+AGG - chr7_1:77514466-77514485 None:intergenic 35.0%
TATAGGGGATGAACATATAG+TGG - chr7_1:77514788-77514807 None:intergenic 35.0%
ACATCAATAGGTATGGAACA+AGG + chr7_1:77515024-77515043 Msa1040150:intron 35.0%
CATCAATAGGTATGGAACAA+GGG + chr7_1:77515025-77515044 Msa1040150:intron 35.0%
TTGTATAACAAACTACAGCG+AGG - chr7_1:77515254-77515273 None:intergenic 35.0%
TAGAAAGACAGTAGAGTAGT+AGG + chr7_1:77515289-77515308 Msa1040150:three_prime_UTR 35.0%
AGAAAGACAGTAGAGTAGTA+GGG + chr7_1:77515290-77515309 Msa1040150:three_prime_UTR 35.0%
AAGCTTGAGTAAACAGATCA+AGG - chr7_1:77515347-77515366 None:intergenic 35.0%
TTCAACAGCAGAAATAACTG+AGG + chr7_1:77515379-77515398 Msa1040150:three_prime_UTR 35.0%
TGAATCTGATTATAGCCAAG+AGG - chr7_1:77515406-77515425 None:intergenic 35.0%
TCTTGGCTATAATCAGATTC+AGG + chr7_1:77515405-77515424 Msa1040150:three_prime_UTR 35.0%
CTATAATCAGATTCAGGAAC+TGG + chr7_1:77515411-77515430 Msa1040150:three_prime_UTR 35.0%
! AGTGTGTGCATTGTTTGTTT+TGG + chr7_1:77515459-77515478 Msa1040150:three_prime_UTR 35.0%
AAAATAAGTCATGTGGGTAC+TGG + chr7_1:77515513-77515532 Msa1040150:three_prime_UTR 35.0%
!! ACTATGGTGTTGGTAAAACT+TGG + chr7_1:77515646-77515665 Msa1040150:three_prime_UTR 35.0%
GCTTACAAATCCAACATCTT+AGG + chr7_1:77515703-77515722 Msa1040150:three_prime_UTR 35.0%
AAGGCCTATCCTTGAACTAA+AGG - chr7_1:77513156-77513175 None:intergenic 40.0%
! GGAATTTAGAATGGAGCTGT+TGG - chr7_1:77513258-77513277 None:intergenic 40.0%
GATGCAAGTAGAAGCTTCAT+TGG - chr7_1:77513306-77513325 None:intergenic 40.0%
!! CAGTGATGATTGTTGGTGAT+GGG - chr7_1:77513582-77513601 None:intergenic 40.0%
! ACAGTGATGATTGTTGGTGA+TGG - chr7_1:77513583-77513602 None:intergenic 40.0%
GAAGGAACAGTGATGATTGT+TGG - chr7_1:77513589-77513608 None:intergenic 40.0%
AGAAACTGTTGTGACAGGAT+TGG - chr7_1:77513614-77513633 None:intergenic 40.0%
ACAGTTTCTCCAACAAATCC+AGG + chr7_1:77513625-77513644 Msa1040150:CDS 40.0%
!! GCTGGATTTGTTGGTGATAA+TGG - chr7_1:77513694-77513713 None:intergenic 40.0%
!! GGTGAATTTGCTGGATTTGT+TGG - chr7_1:77513703-77513722 None:intergenic 40.0%
! GCTGTTTGAAGTGTAGATTG+TGG - chr7_1:77513904-77513923 None:intergenic 40.0%
GACTATGCTTGTGGAACAAA+AGG + chr7_1:77513928-77513947 Msa1040150:CDS 40.0%
! CACTTTTCATAGGGTCTGTA+TGG + chr7_1:77514660-77514679 Msa1040150:intron 40.0%
CACATTAAGCGAGTCTGTTT+GGG - chr7_1:77514960-77514979 None:intergenic 40.0%
ACACATTAAGCGAGTCTGTT+TGG - chr7_1:77514961-77514980 None:intergenic 40.0%
!! GAACAAGGGAGTACTAATCA+TGG + chr7_1:77515039-77515058 Msa1040150:intron 40.0%
! ACATCATCTCCAGTAGGTTT+TGG + chr7_1:77515096-77515115 Msa1040150:CDS 40.0%
! CATCATCTCCAGTAGGTTTT+GGG + chr7_1:77515097-77515116 Msa1040150:CDS 40.0%
GTTGAATGAGAGGAATCCAA+TGG - chr7_1:77515135-77515154 None:intergenic 40.0%
TTGGATTCCTCTCATTCAAC+TGG + chr7_1:77515135-77515154 Msa1040150:CDS 40.0%
!! CATGGTTCTGGTGACATTAT+TGG + chr7_1:77515179-77515198 Msa1040150:CDS 40.0%
TTATTGGTCAGTGGAAGACT+CGG + chr7_1:77515195-77515214 Msa1040150:CDS 40.0%
AGAGCATGGAAGCTAACTAT+GGG - chr7_1:77515227-77515246 None:intergenic 40.0%
TAGAGCATGGAAGCTAACTA+TGG - chr7_1:77515228-77515247 None:intergenic 40.0%
AGAAATAACTGAGGACCTCT+TGG + chr7_1:77515388-77515407 Msa1040150:three_prime_UTR 40.0%
TTCAGGAACTGGAGTAGTTT+AGG + chr7_1:77515422-77515441 Msa1040150:three_prime_UTR 40.0%
GTAAAATCGTAGTGGTCTGA+TGG - chr7_1:77515730-77515749 None:intergenic 40.0%
!! GTTGTGACAGGATTGGTTGA+AGG - chr7_1:77513607-77513626 None:intergenic 45.0%
GTTGGAGAAACTGTTGTGAC+AGG - chr7_1:77513619-77513638 None:intergenic 45.0%
GTAGTAGAAGGAACTGTGAC+AGG - chr7_1:77513658-77513677 None:intergenic 45.0%
!! GTTGGTGATAATGGAACAGC+TGG - chr7_1:77513685-77513704 None:intergenic 45.0%
!! ACAGGTACTGGTGAATTTGC+TGG - chr7_1:77513712-77513731 None:intergenic 45.0%
!! GGTGGTGGATAAGAATTCAC+TGG - chr7_1:77513766-77513785 None:intergenic 45.0%
!! GTTCCTCCTGATAATGGTGA+TGG - chr7_1:77513787-77513806 None:intergenic 45.0%
TCACCATTATCAGGAGGAAC+AGG + chr7_1:77513787-77513806 Msa1040150:CDS 45.0%
GTTCCTGTTCCTCCTGATAA+TGG - chr7_1:77513793-77513812 None:intergenic 45.0%
AGTCCTCCATCTTCTTCTTC+AGG + chr7_1:77513847-77513866 Msa1040150:CDS 45.0%
CTACCTCCTGAAGAAGAAGA+TGG - chr7_1:77513856-77513875 None:intergenic 45.0%
AGTGTAGATTGTGGTGTTCC+AGG - chr7_1:77513895-77513914 None:intergenic 45.0%
! ACAGCATTGGACTATGCTTG+TGG + chr7_1:77513919-77513938 Msa1040150:CDS 45.0%
GATTGTAACAGCTACCACCT+TGG - chr7_1:77513975-77513994 None:intergenic 45.0%
CAACAAGCTGTGACTTTGGA+GGG + chr7_1:77514058-77514077 Msa1040150:CDS 45.0%
! AACAAGCTGTGACTTTGGAG+GGG + chr7_1:77514059-77514078 Msa1040150:CDS 45.0%
GAAGGTGACGTTTACCAAAC+TGG - chr7_1:77514744-77514763 None:intergenic 45.0%
! AGATAGCTTGTGGCTCTGTT+TGG - chr7_1:77514840-77514859 None:intergenic 45.0%
AACAGAGCCACAAGCTATCT+TGG + chr7_1:77514840-77514859 Msa1040150:intron 45.0%
! TAAGCGAGTCTGTTTGGGAT+TGG - chr7_1:77514955-77514974 None:intergenic 45.0%
! ATTCCCATCTTTTGCAGCTC+TGG + chr7_1:77515069-77515088 Msa1040150:intron 45.0%
GTACCAGAGCTGCAAAAGAT+GGG - chr7_1:77515075-77515094 None:intergenic 45.0%
AGTACCAGAGCTGCAAAAGA+TGG - chr7_1:77515076-77515095 None:intergenic 45.0%
GGTACTACATCATCTCCAGT+AGG + chr7_1:77515090-77515109 Msa1040150:CDS 45.0%
GAATCCAATGGAGAGCTTTG+CGG - chr7_1:77515123-77515142 None:intergenic 45.0%
TCTCAGACCAGTTGAATGAG+AGG - chr7_1:77515145-77515164 None:intergenic 45.0%
AGAACCATGCAGCTTAGCAA+AGG - chr7_1:77515168-77515187 None:intergenic 45.0%
TTTGCTAAGCTGCATGGTTC+TGG + chr7_1:77515167-77515186 Msa1040150:CDS 45.0%
CTGGTGACATTATTGGTCAG+TGG + chr7_1:77515186-77515205 Msa1040150:CDS 45.0%
AGAGTAGTAGGGAGAGTTTG+TGG + chr7_1:77515301-77515320 Msa1040150:three_prime_UTR 45.0%
! GTCTGATGGACCTAAGATGT+TGG - chr7_1:77515716-77515735 None:intergenic 45.0%
! TGACAGTGACAGCGTTGAAA+TGG - chr7_1:77515816-77515835 None:intergenic 45.0%
! GGTGTTGCACCTGGATTTGT+TGG - chr7_1:77513637-77513656 None:intergenic 50.0%
ACAGCTGGTGGAGTAGTAGA+AGG - chr7_1:77513670-77513689 None:intergenic 50.0%
!! GGTGATAATGGAACAGCTGG+TGG - chr7_1:77513682-77513701 None:intergenic 50.0%
!! GTTGGTGGTGTAACAGGTAC+TGG - chr7_1:77513724-77513743 None:intergenic 50.0%
!! GGAACTGTTGGTGGTGTAAC+AGG - chr7_1:77513730-77513749 None:intergenic 50.0%
GTTACACCACCAACAGTTCC+AGG + chr7_1:77513730-77513749 Msa1040150:CDS 50.0%
GTTGTTCCTCCTGGAACTGT+TGG - chr7_1:77513742-77513761 None:intergenic 50.0%
!! TTCACTGGTGTTGTTCCTCC+TGG - chr7_1:77513751-77513770 None:intergenic 50.0%
!! CCTGATAATGGTGATGGTGG+TGG - chr7_1:77513781-77513800 None:intergenic 50.0%
CCACCACCATCACCATTATC+AGG + chr7_1:77513778-77513797 Msa1040150:CDS 50.0%
!! CCTCCTGATAATGGTGATGG+TGG - chr7_1:77513784-77513803 None:intergenic 50.0%
CCACCATCACCATTATCAGG+AGG + chr7_1:77513781-77513800 Msa1040150:CDS 50.0%
GAAGGTGGAGGATTTGTGAC+AGG - chr7_1:77513820-77513839 None:intergenic 50.0%
GATGGAGGACTTGTGCTTGA+AGG - chr7_1:77513838-77513857 None:intergenic 50.0%
CCTCCTGAAGAAGAAGATGG+AGG - chr7_1:77513853-77513872 None:intergenic 50.0%
CCTCCATCTTCTTCTTCAGG+AGG + chr7_1:77513850-77513869 Msa1040150:CDS 50.0%
CTTCTTCTTCAGGAGGTAGC+TGG + chr7_1:77513857-77513876 Msa1040150:CDS 50.0%
!! AAGTCACAGCTTGTTGCAGC+AGG - chr7_1:77514054-77514073 None:intergenic 50.0%
GCTGCAACAAGCTGTGACTT+TGG + chr7_1:77514054-77514073 Msa1040150:CDS 50.0%
GCAACAAGCTGTGACTTTGG+AGG + chr7_1:77514057-77514076 Msa1040150:CDS 50.0%
TGAAGCTGATGGGAAGATGC+AGG - chr7_1:77514218-77514237 None:intergenic 50.0%
TGCATCTTCCCATCAGCTTC+AGG + chr7_1:77514217-77514236 Msa1040150:CDS 50.0%
ATCTTCCCATCAGCTTCAGG+AGG + chr7_1:77514220-77514239 Msa1040150:CDS 50.0%
GGGTAAGTGAGAACCGTGAA+GGG + chr7_1:77514280-77514299 Msa1040150:intron 50.0%
GCTGATAAGCTCGTGTGAGA+AGG - chr7_1:77514762-77514781 None:intergenic 50.0%
AAGGGCTCCAAGATAGCTTG+TGG - chr7_1:77514850-77514869 None:intergenic 50.0%
GAGACCTTTGCTAAGCTGCA+TGG + chr7_1:77515161-77515180 Msa1040150:CDS 50.0%
TACAGCGAGGAGATAGAGCA+TGG - chr7_1:77515241-77515260 None:intergenic 50.0%
! ACTGTGACAGGTGTTGCACC+TGG - chr7_1:77513646-77513665 None:intergenic 55.0%
ACACCACCAACAGTTCCAGG+AGG + chr7_1:77513733-77513752 Msa1040150:CDS 55.0%
GTTCCTCCTGGAACTGTTGG+TGG - chr7_1:77513739-77513758 None:intergenic 55.0%
GGACTTGTGCTTGAAGGTGG+AGG - chr7_1:77513832-77513851 None:intergenic 55.0%
GGAGGACTTGTGCTTGAAGG+TGG - chr7_1:77513835-77513854 None:intergenic 55.0%
TTCAGGAGGTAGCTGGTGTG+TGG + chr7_1:77513864-77513883 Msa1040150:CDS 55.0%
AGCTGGTGTGTGGCTAAACC+TGG + chr7_1:77513874-77513893 Msa1040150:CDS 55.0%
TTCCCATCAGCTTCAGGAGG+AGG + chr7_1:77514223-77514242 Msa1040150:CDS 55.0%
CTCCTCCTCCTGAAGCTGAT+GGG - chr7_1:77514228-77514247 None:intergenic 55.0%
CGGGTAAGTGAGAACCGTGA+AGG + chr7_1:77514279-77514298 Msa1040150:intron 55.0%
CTTTGCGGCCCAAAACCTAC+TGG - chr7_1:77515108-77515127 None:intergenic 55.0%
GCTCCTCCTCCTGAAGCTGA+TGG - chr7_1:77514229-77514248 None:intergenic 60.0%
TCAGCTTCAGGAGGAGGAGC+TGG + chr7_1:77514229-77514248 Msa1040150:CDS 60.0%
CACGGTTCTCACTTACCCGC+CGG - chr7_1:77514278-77514297 None:intergenic 60.0%
TGGGCCGCAAAGCTCTCCAT+TGG + chr7_1:77515116-77515135 Msa1040150:CDS 60.0%
TCAGGAGGAGGAGCTGGCAC+AGG + chr7_1:77514235-77514254 Msa1040150:CDS 65.0%
GGCACAGGCACAGGCACATC+CGG + chr7_1:77514256-77514275 Msa1040150:CDS 65.0%
ACAGGCACAGGCACATCCGG+CGG + chr7_1:77514259-77514278 Msa1040150:CDS 65.0%
GGAGGAGCTGGCACAGGCAC+AGG + chr7_1:77514241-77514260 Msa1040150:CDS 70.0%
GCTGGCACAGGCACAGGCAC+AGG + chr7_1:77514247-77514266 Msa1040150:CDS 70.0%
CAGGCACAGGCACATCCGGC+GGG + chr7_1:77514260-77514279 Msa1040150:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 77512961 77515895 77512961 ID=Msa1040150;Name=Msa1040150
chr7_1 mRNA 77512961 77515895 77512961 ID=Msa1040150-mRNA-1;Parent=Msa1040150;Name=Msa1040150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=298|1|1|1|0.75|0.6|5|665|310
chr7_1 exon 77512961 77513178 77512961 ID=Msa1040150-mRNA-1:exon:20416;Parent=Msa1040150-mRNA-1
chr7_1 exon 77513219 77513359 77513219 ID=Msa1040150-mRNA-1:exon:20417;Parent=Msa1040150-mRNA-1
chr7_1 exon 77513458 77514108 77513458 ID=Msa1040150-mRNA-1:exon:20418;Parent=Msa1040150-mRNA-1
chr7_1 exon 77514206 77514281 77514206 ID=Msa1040150-mRNA-1:exon:20419;Parent=Msa1040150-mRNA-1
chr7_1 exon 77515086 77515895 77515086 ID=Msa1040150-mRNA-1:exon:20420;Parent=Msa1040150-mRNA-1
chr7_1 five_prime_UTR 77512961 77513178 77512961 ID=Msa1040150-mRNA-1:five_prime_utr;Parent=Msa1040150-mRNA-1
chr7_1 five_prime_UTR 77513219 77513298 77513219 ID=Msa1040150-mRNA-1:five_prime_utr;Parent=Msa1040150-mRNA-1
chr7_1 CDS 77513299 77513359 77513299 ID=Msa1040150-mRNA-1:cds;Parent=Msa1040150-mRNA-1
chr7_1 CDS 77513458 77514108 77513458 ID=Msa1040150-mRNA-1:cds;Parent=Msa1040150-mRNA-1
chr7_1 CDS 77514206 77514281 77514206 ID=Msa1040150-mRNA-1:cds;Parent=Msa1040150-mRNA-1
chr7_1 CDS 77515086 77515230 77515086 ID=Msa1040150-mRNA-1:cds;Parent=Msa1040150-mRNA-1
chr7_1 three_prime_UTR 77515231 77515895 77515231 ID=Msa1040150-mRNA-1:three_prime_utr;Parent=Msa1040150-mRNA-1
Gene Sequence

>Msa1040150

ATGGCCAATGAAGCTTCTACTTGCATCTTGTTCCTATCTTTTCTCATTTTCTTCTGTTCTGGAACCAATGCATTTTCAACTATTTCTGGAGCAAGATTCCTTCCAAAAAGCAAGATCTCAAAGTCTCAGATTCAGTTTCTTGTAACAGATCACAAGATTTGGAGAAAACTTCTAGACACAAACCCATCACCAACAATCATCACTGTTCCTTCAACCAATCCTGTCACAACAGTTTCTCCAACAAATCCAGGTGCAACACCTGTCACAGTTCCTTCTACTACTCCACCAGCTGTTCCATTATCACCAACAAATCCAGCAAATTCACCAGTACCTGTTACACCACCAACAGTTCCAGGAGGAACAACACCAGTGAATTCTTATCCACCACCATCACCATTATCAGGAGGAACAGGAACTGTTCCTGTCACAAATCCTCCACCTTCAAGCACAAGTCCTCCATCTTCTTCTTCAGGAGGTAGCTGGTGTGTGGCTAAACCTGGAACACCACAATCTACACTTCAAACAGCATTGGACTATGCTTGTGGAACAAAAGGAACTGATTGTTCACAAATAAACCAAGGTGGTAGCTGTTACAATCCAAATTCACTTCAAAACCATGCTTCTTTTGCATTCAACAGCTACTATGTAAAGAATCCTGCTGCAACAAGCTGTGACTTTGGAGGGGTTGCTACCATTACTAGCACTAATCCTAGTTCTGGTACCTGCATCTTCCCATCAGCTTCAGGAGGAGGAGCTGGCACAGGCACAGGCACAGGCACATCCGGCGGCTCTGGTACTACATCATCTCCAGTAGGTTTTGGGCCGCAAAGCTCTCCATTGGATTCCTCTCATTCAACTGGTCTGAGACCTTTGCTAAGCTGCATGGTTCTGGTGACATTATTGGTCAGTGGAAGACTCGGCATGAGCCCATAG
Protein sequence

>Msa1040150

MANEASTCILFLSFLIFFCSGTNAFSTISGARFLPKSKISKSQIQFLVTDHKIWRKLLDTNPSPTIITVPSTNPVTTVSPTNPGATPVTVPSTTPPAVPLSPTNPANSPVPVTPPTVPGGTTPVNSYPPPSPLSGGTGTVPVTNPPPSSTSPPSSSSGGSWCVAKPGTPQSTLQTALDYACGTKGTDCSQINQGGSCYNPNSLQNHASFAFNSYYVKNPAATSCDFGGVATITSTNPSSGTCIFPSASGGGAGTGTGTGTSGGSGTTSSPVGFGPQSSPLDSSHSTGLRPLLSCMVLVTLLVSGRLGMSP*