Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432380 | XP_003603344.2 | 92.593 | 324 | 24 | 0 | 1 | 324 | 132 | 455 | 0.0 | 617 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432380 | sp|Q9SZ45|MICU_ARATH | 61.420 | 324 | 117 | 2 | 1 | 316 | 175 | 498 | 1.57e-139 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432380 | G7JAF6 | 92.593 | 324 | 24 | 0 | 1 | 324 | 132 | 455 | 0.0 | 617 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa0432380 | 0.819968 | 8.790575e-53 | -8.615850e-47 |
| Msa0009760 | Msa0432380 | 0.803230 | 3.850349e-49 | -8.615850e-47 |
| Msa0017510 | Msa0432380 | 0.821708 | 3.496440e-53 | -8.615850e-47 |
| Msa0034270 | Msa0432380 | 0.801164 | 1.024406e-48 | -8.615850e-47 |
| Msa0049790 | Msa0432380 | 0.820227 | 7.668450e-53 | -8.615850e-47 |
| Msa0069330 | Msa0432380 | 0.817886 | 2.612620e-52 | -8.615850e-47 |
| Msa0078650 | Msa0432380 | 0.812182 | 4.822035e-51 | -8.615850e-47 |
| Msa0081520 | Msa0432380 | 0.838743 | 2.399394e-57 | -8.615850e-47 |
| Msa0094850 | Msa0432380 | 0.829667 | 4.529193e-55 | -8.615850e-47 |
| Msa0104550 | Msa0432380 | 0.811935 | 5.457031e-51 | -8.615850e-47 |
| Msa0110970 | Msa0432380 | 0.819960 | 8.824328e-53 | -8.615850e-47 |
| Msa0118570 | Msa0432380 | 0.826393 | 2.780282e-54 | -8.615850e-47 |
| Msa0126370 | Msa0432380 | 0.805655 | 1.201999e-49 | -8.615850e-47 |
| Msa0142200 | Msa0432380 | 0.815106 | 1.095723e-51 | -8.615850e-47 |
| Msa0146260 | Msa0432380 | 0.819043 | 1.428711e-52 | -8.615850e-47 |
| Msa0150570 | Msa0432380 | 0.849313 | 3.504326e-60 | -8.615850e-47 |
| Msa0152820 | Msa0432380 | 0.802278 | 6.051390e-49 | -8.615850e-47 |
| Msa0157290 | Msa0432380 | 0.821718 | 3.478689e-53 | -8.615850e-47 |
| Msa0173660 | Msa0432380 | 0.801696 | 7.970311e-49 | -8.615850e-47 |
| Msa0173890 | Msa0432380 | 0.839414 | 1.607136e-57 | -8.615850e-47 |
| Msa0195630 | Msa0432380 | 0.800252 | 1.572390e-48 | -8.615850e-47 |
| Msa0225680 | Msa0432380 | 0.803670 | 3.120752e-49 | -8.615850e-47 |
| Msa0227470 | Msa0432380 | 0.819219 | 1.303070e-52 | -8.615850e-47 |
| Msa0367870 | Msa0432380 | 0.812643 | 3.824760e-51 | -8.615850e-47 |
| Msa0371170 | Msa0432380 | 0.805026 | 1.628595e-49 | -8.615850e-47 |
| Msa0378720 | Msa0432380 | 0.811135 | 8.146318e-51 | -8.615850e-47 |
| Msa0388770 | Msa0432380 | 0.810697 | 1.013182e-50 | -8.615850e-47 |
| Msa0393440 | Msa0432380 | 0.804404 | 2.195261e-49 | -8.615850e-47 |
| Msa0410500 | Msa0432380 | 0.821426 | 4.062911e-53 | -8.615850e-47 |
| Msa0410650 | Msa0432380 | 0.841962 | 3.456448e-58 | -8.615850e-47 |
| Msa0417880 | Msa0432380 | 0.825689 | 4.086594e-54 | -8.615850e-47 |
| Msa0432380 | Msa0447370 | 0.821547 | 3.810909e-53 | -8.615850e-47 |
| Msa0432380 | Msa0452920 | 0.823595 | 1.272618e-53 | -8.615850e-47 |
| Msa0432380 | Msa0461720 | 0.806522 | 7.896630e-50 | -8.615850e-47 |
| Msa0432380 | Msa0462070 | 0.810340 | 1.210060e-50 | -8.615850e-47 |
| Msa0432380 | Msa0467430 | 0.817559 | 3.096657e-52 | -8.615850e-47 |
| Msa0432380 | Msa0474730 | 0.802227 | 6.199554e-49 | -8.615850e-47 |
| Msa0432380 | Msa0475790 | 0.833876 | 4.146573e-56 | -8.615850e-47 |
| Msa0432380 | Msa0479170 | 0.818110 | 2.325059e-52 | -8.615850e-47 |
| Msa0432380 | Msa0479200 | 0.802125 | 6.506237e-49 | -8.615850e-47 |
| Msa0432380 | Msa0488790 | 0.827732 | 1.329949e-54 | -8.615850e-47 |
| Msa0432380 | Msa0495320 | 0.815324 | 9.801553e-52 | -8.615850e-47 |
| Msa0432380 | Msa0498060 | 0.813863 | 2.063724e-51 | -8.615850e-47 |
| Msa0432380 | Msa0507680 | 0.841589 | 4.336636e-58 | -8.615850e-47 |
| Msa0432380 | Msa0513160 | 0.829366 | 5.360569e-55 | -8.615850e-47 |
| Msa0432380 | Msa0574890 | 0.803009 | 4.276109e-49 | -8.615850e-47 |
| Msa0432380 | Msa0585560 | 0.801162 | 1.025346e-48 | -8.615850e-47 |
| Msa0432380 | Msa0596610 | 0.809001 | 2.348170e-50 | -8.615850e-47 |
| Msa0432380 | Msa0600930 | 0.804410 | 2.189762e-49 | -8.615850e-47 |
| Msa0432380 | Msa0620230 | 0.800509 | 1.394131e-48 | -8.615850e-47 |
| Msa0432380 | Msa0623330 | 0.814272 | 1.676697e-51 | -8.615850e-47 |
| Msa0432380 | Msa0626450 | 0.805775 | 1.134076e-49 | -8.615850e-47 |
| Msa0432380 | Msa0626490 | 0.802384 | 5.755162e-49 | -8.615850e-47 |
| Msa0432380 | Msa0638480 | 0.810670 | 1.026933e-50 | -8.615850e-47 |
| Msa0432380 | Msa0664600 | 0.800375 | 1.484090e-48 | -8.615850e-47 |
| Msa0432380 | Msa0667050 | 0.807623 | 4.618129e-50 | -8.615850e-47 |
| Msa0432380 | Msa0675130 | 0.814499 | 1.493254e-51 | -8.615850e-47 |
| Msa0432380 | Msa0682330 | 0.800395 | 1.470470e-48 | -8.615850e-47 |
| Msa0432380 | Msa0683570 | 0.805775 | 1.134166e-49 | -8.615850e-47 |
| Msa0432380 | Msa0708520 | 0.800937 | 1.139820e-48 | -8.615850e-47 |
| Msa0432380 | Msa0727710 | 0.813929 | 1.995359e-51 | -8.615850e-47 |
| Msa0432380 | Msa0742740 | 0.834238 | 3.363710e-56 | -8.615850e-47 |
| Msa0432380 | Msa0749760 | 0.800982 | 1.116085e-48 | -8.615850e-47 |
| Msa0432380 | Msa0770720 | 0.812346 | 4.439227e-51 | -8.615850e-47 |
| Msa0432380 | Msa0780270 | 0.819034 | 1.435408e-52 | -8.615850e-47 |
| Msa0432380 | Msa0796160 | 0.806342 | 8.618285e-50 | -8.615850e-47 |
| Msa0432380 | Msa0823820 | 0.842826 | 2.039593e-58 | -8.615850e-47 |
| Msa0432380 | Msa0826130 | 0.800948 | 1.134327e-48 | -8.615850e-47 |
| Msa0432380 | Msa0828560 | 0.811525 | 6.702958e-51 | -8.615850e-47 |
| Msa0432380 | Msa0833220 | 0.805716 | 1.166856e-49 | -8.615850e-47 |
| Msa0432380 | Msa0833760 | 0.805302 | 1.425233e-49 | -8.615850e-47 |
| Msa0432380 | Msa0861510 | 0.805327 | 1.408551e-49 | -8.615850e-47 |
| Msa0432380 | Msa0861600 | 0.804584 | 2.013852e-49 | -8.615850e-47 |
| Msa0432380 | Msa0863010 | 0.847313 | 1.251506e-59 | -8.615850e-47 |
| Msa0432380 | Msa0866520 | 0.802584 | 5.235222e-49 | -8.615850e-47 |
| Msa0432380 | Msa0880140 | 0.820541 | 6.495026e-53 | -8.615850e-47 |
| Msa0432380 | Msa0896410 | 0.802047 | 6.753082e-49 | -8.615850e-47 |
| Msa0432380 | Msa0967380 | 0.809133 | 2.199891e-50 | -8.615850e-47 |
| Msa0432380 | Msa0967870 | 0.813716 | 2.223300e-51 | -8.615850e-47 |
| Msa0432380 | Msa1004550 | 0.809989 | 1.440501e-50 | -8.615850e-47 |
| Msa0432380 | Msa1019430 | 0.811464 | 6.911534e-51 | -8.615850e-47 |
| Msa0432380 | Msa1019470 | 0.819419 | 1.173168e-52 | -8.615850e-47 |
| Msa0432380 | Msa1020510 | 0.805995 | 1.019795e-49 | -8.615850e-47 |
| Msa0432380 | Msa1020630 | 0.809556 | 1.785233e-50 | -8.615850e-47 |
| Msa0432380 | Msa1031930 | 0.861841 | 7.726040e-64 | -8.615850e-47 |
| Msa0432380 | Msa1043370 | 0.801567 | 8.471800e-49 | -8.615850e-47 |
| Msa0432380 | Msa1051830 | 0.810749 | 9.874237e-51 | -8.615850e-47 |
| Msa0432380 | Msa1063950 | 0.800725 | 1.259350e-48 | -8.615850e-47 |
| Msa0432380 | Msa1071770 | 0.836769 | 7.706955e-57 | -8.615850e-47 |
| Msa0432380 | Msa1085200 | 0.838350 | 3.030579e-57 | -8.615850e-47 |
| Msa0432380 | Msa1102770 | 0.800079 | 1.705233e-48 | -8.615850e-47 |
| Msa0432380 | Msa1113800 | 0.816686 | 4.864788e-52 | -8.615850e-47 |
| Msa0432380 | Msa1123380 | 0.819184 | 1.326824e-52 | -8.615850e-47 |
| Msa0432380 | Msa1125940 | 0.829291 | 5.587584e-55 | -8.615850e-47 |
| Msa0432380 | Msa1132700 | 0.811596 | 6.468278e-51 | -8.615850e-47 |
| Msa0432380 | Msa1150820 | 0.807627 | 4.609067e-50 | -8.615850e-47 |
| Msa0432380 | Msa1151910 | 0.828828 | 7.234887e-55 | -8.615850e-47 |
| Msa0432380 | Msa1152510 | 0.801966 | 7.017514e-49 | -8.615850e-47 |
| Msa0432380 | Msa1158830 | 0.842983 | 1.853266e-58 | -8.615850e-47 |
| Msa0432380 | Msa1160500 | 0.830643 | 2.616359e-55 | -8.615850e-47 |
| Msa0432380 | Msa1181190 | 0.821064 | 4.924531e-53 | -8.615850e-47 |
| Msa0432380 | Msa1184330 | 0.827203 | 1.780937e-54 | -8.615850e-47 |
| Msa0432380 | Msa1199570 | 0.816958 | 4.227686e-52 | -8.615850e-47 |
| Msa0432380 | Msa1208160 | 0.820799 | 5.666575e-53 | -8.615850e-47 |
| Msa0432380 | Msa1208430 | 0.807112 | 5.925379e-50 | -8.615850e-47 |
| Msa0432380 | Msa1209460 | 0.800268 | 1.560728e-48 | -8.615850e-47 |
| Msa0432380 | Msa1227940 | 0.820905 | 5.356894e-53 | -8.615850e-47 |
| Msa0432380 | Msa1267770 | 0.815325 | 9.793657e-52 | -8.615850e-47 |
| Msa0432380 | Msa1298370 | 0.830135 | 3.481757e-55 | -8.615850e-47 |
| Msa0432380 | Msa1303240 | 0.802977 | 4.342799e-49 | -8.615850e-47 |
| Msa0432380 | Msa1303250 | 0.810471 | 1.133708e-50 | -8.615850e-47 |
| Msa0432380 | Msa1308140 | 0.848425 | 6.181980e-60 | -8.615850e-47 |
| Msa0432380 | Msa1328640 | 0.808986 | 2.364540e-50 | -8.615850e-47 |
| Msa0432380 | Msa1328710 | 0.817439 | 3.296347e-52 | -8.615850e-47 |
| Msa0432380 | Msa1356830 | 0.838186 | 3.338772e-57 | -8.615850e-47 |
| Msa0432380 | Msa1361410 | 0.802347 | 5.858420e-49 | -8.615850e-47 |
| Msa0432380 | Msa1374040 | 0.827510 | 1.503823e-54 | -8.615850e-47 |
| Msa0432380 | Msa1437940 | 0.818880 | 1.556114e-52 | -8.615850e-47 |
| Msa0432380 | Msa1440960 | 0.800211 | 1.603051e-48 | -8.615850e-47 |
| Msa0432380 | Msa1445190 | 0.826955 | 2.041379e-54 | -8.615850e-47 |
| Msa0432380 | Msa1451160 | 0.800505 | 1.396444e-48 | -8.615850e-47 |
| Msa0243100 | Msa0432380 | 0.810591 | 1.067970e-50 | -8.615850e-47 |
| Msa0248970 | Msa0432380 | 0.803510 | 3.368749e-49 | -8.615850e-47 |
| Msa0258310 | Msa0432380 | 0.809958 | 1.462993e-50 | -8.615850e-47 |
| Msa0261340 | Msa0432380 | 0.804087 | 2.556459e-49 | -8.615850e-47 |
| Msa0265850 | Msa0432380 | 0.825656 | 4.161267e-54 | -8.615850e-47 |
| Msa0276920 | Msa0432380 | 0.805779 | 1.131823e-49 | -8.615850e-47 |
| Msa0284420 | Msa0432380 | 0.801199 | 1.007886e-48 | -8.615850e-47 |
| Msa0287650 | Msa0432380 | 0.818712 | 1.698719e-52 | -8.615850e-47 |
| Msa0287740 | Msa0432380 | 0.811591 | 6.484711e-51 | -8.615850e-47 |
| Msa0297790 | Msa0432380 | 0.828304 | 9.684270e-55 | -8.615850e-47 |
| Msa0300270 | Msa0432380 | 0.802375 | 5.780018e-49 | -8.615850e-47 |
| Msa0300690 | Msa0432380 | 0.800492 | 1.405023e-48 | -8.615850e-47 |
| Msa0305700 | Msa0432380 | 0.804605 | 1.993396e-49 | -8.615850e-47 |
| Msa0316810 | Msa0432380 | 0.800071 | 1.711973e-48 | -8.615850e-47 |
| Msa0333920 | Msa0432380 | 0.806748 | 7.076292e-50 | -8.615850e-47 |
| Msa0335800 | Msa0432380 | 0.822637 | 2.130008e-53 | -8.615850e-47 |
| Msa0341540 | Msa0432380 | 0.804595 | 2.003223e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432380 | MtrunA17_Chr3g0137381 | 92.593 | 324 | 24 | 0 | 1 | 324 | 53 | 376 | 0.0 | 615 |
| Msa0432380 | MtrunA17_Chr1g0149571 | 67.318 | 358 | 83 | 2 | 1 | 324 | 139 | 496 | 3.50e-166 | 472 |
| Msa0432380 | MtrunA17_Chr4g0064961 | 62.342 | 316 | 114 | 3 | 1 | 314 | 152 | 464 | 4.83e-139 | 402 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432380 | AT4G32060.1 | 61.420 | 324 | 117 | 2 | 1 | 316 | 175 | 498 | 1.59e-140 | 407 |
| Msa0432380 | AT4G32060.2 | 63.019 | 265 | 94 | 1 | 1 | 261 | 175 | 439 | 2.96e-113 | 336 |
Find 80 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCAACAGGTATTTATTCT+TGG | 0.261814 | 3_2:+84546716 | Msa0432380:intron |
| GAAAATCATCTCTTGATAAA+AGG | 0.267884 | 3_2:-84547610 | None:intergenic |
| TAGTATTGGTAGAACATAAT+AGG | 0.306697 | 3_2:+84548040 | Msa0432380:three_prime_UTR |
| ACGGATGCTTCTGTAGAAAA+TGG | 0.331087 | 3_2:+84547110 | Msa0432380:CDS |
| TGCAAAATCCGTAGCTGATA+TGG | 0.344918 | 3_2:-84547399 | None:intergenic |
| CCGTCTGTTGTTCATTCCTT+CGG | 0.364459 | 3_2:-84547091 | None:intergenic |
| GATTCAGATGGAGGGAAAAC+TGG | 0.369374 | 3_2:-84546452 | None:intergenic |
| TTCATAAGAACTTCCCCTTC+CGG | 0.375488 | 3_2:-84546401 | None:intergenic |
| CAGGAGAACAACTGTGAACC+TGG | 0.388553 | 3_2:-84547983 | None:intergenic |
| ATGAAGATGGCAATTTCTAA+TGG | 0.392318 | 3_2:-84548128 | None:intergenic |
| TCACAAATTTATCATGTTTG+AGG | 0.403030 | 3_2:-84547175 | None:intergenic |
| ATGGCAATTTCTAATGGAAA+TGG | 0.403751 | 3_2:-84548122 | None:intergenic |
| GTGCAAATAAAATGTTCTAA+TGG | 0.416419 | 3_2:+84548174 | Msa0432380:three_prime_UTR |
| AAAATTAGTACCACTATCAT+TGG | 0.426523 | 3_2:+84547559 | Msa0432380:CDS |
| GCCATCTTCATTTCTTTGCA+TGG | 0.445095 | 3_2:+84548140 | Msa0432380:three_prime_UTR |
| CTACTTCTAATTACTAGTAT+TGG | 0.446389 | 3_2:+84548026 | Msa0432380:three_prime_UTR |
| TGATGTACGCATTACATTTG+AGG | 0.447784 | 3_2:+84547508 | Msa0432380:CDS |
| GAATACTTATTTGATAAAGA+TGG | 0.448774 | 3_2:+84547143 | Msa0432380:CDS |
| CCCCACTTGTGTCAAACAAA+TGG | 0.450750 | 3_2:-84547835 | None:intergenic |
| ATCTGTGGAGACAGGAATCA+TGG | 0.451532 | 3_2:+84547922 | Msa0432380:CDS |
| CATAGTTGCTTCTGCAGACG+TGG | 0.455766 | 3_2:+84547427 | Msa0432380:CDS |
| CACGTCTGCAGAAGCAACTA+TGG | 0.461473 | 3_2:-84547426 | None:intergenic |
| TTTGTTCTGTTTCAGGTTTG+TGG | 0.465974 | 3_2:+84547776 | Msa0432380:intron |
| TGGGTTTCTTGTCATGCTGT+TGG | 0.466145 | 3_2:+84547942 | Msa0432380:CDS |
| CTGAATAGAGCCAATGATAG+TGG | 0.478589 | 3_2:-84547569 | None:intergenic |
| AGGGGAAGTTCTTATGAAAC+CGG | 0.494170 | 3_2:+84546406 | Msa0432380:exon |
| TTGTTTGACACAAGTGGGGA+TGG | 0.495343 | 3_2:+84547839 | Msa0432380:CDS |
| AAATAAAATGTTCTAATGGC+CGG | 0.499826 | 3_2:+84548178 | Msa0432380:three_prime_UTR |
| TTGGAAGGCGAAAGATGTCC+TGG | 0.502851 | 3_2:+84546497 | Msa0432380:CDS |
| ATCTGAGCAAGTTACTAGAA+AGG | 0.506093 | 3_2:+84547453 | Msa0432380:CDS |
| TCCATTTGTTTGACACAAGT+GGG | 0.507708 | 3_2:+84547834 | Msa0432380:CDS |
| ATGTTTGACATGGATAATGA+TGG | 0.509533 | 3_2:+84546786 | Msa0432380:CDS |
| CCTTGTTAGAGATGGATCCT+TGG | 0.513653 | 3_2:+84546478 | Msa0432380:CDS |
| AACTGTACAGACACTTCCCC+AGG | 0.517317 | 3_2:+84547965 | Msa0432380:CDS |
| AGGACATCTTTCGCCTTCCA+AGG | 0.518011 | 3_2:-84546495 | None:intergenic |
| GAACTTCCCCTTCCGGTGTA+CGG | 0.519406 | 3_2:-84546394 | None:intergenic |
| TTCCATTTGTTTGACACAAG+TGG | 0.521772 | 3_2:+84547833 | Msa0432380:CDS |
| TCTGAGCAAGTTACTAGAAA+GGG | 0.522536 | 3_2:+84547454 | Msa0432380:CDS |
| TTATTTGATAAAGATGGAAA+AGG | 0.526009 | 3_2:+84547149 | Msa0432380:CDS |
| GGATCCATCTCTAACAAGGT+TGG | 0.529594 | 3_2:-84546474 | None:intergenic |
| CAGAGGCGTGAGAGAGATGT+TGG | 0.533380 | 3_2:+84547896 | Msa0432380:CDS |
| TAAAGAAGAATTCAAAAGAG+TGG | 0.533414 | 3_2:+84547031 | Msa0432380:CDS |
| GTTGGTCGATCTGTGGAGAC+AGG | 0.535847 | 3_2:+84547914 | Msa0432380:CDS |
| CATCGATGCGATCTCATAGC+AGG | 0.536752 | 3_2:+84547057 | Msa0432380:CDS |
| ATACTAGTAATTAGAAGTAG+TGG | 0.538506 | 3_2:-84548023 | None:intergenic |
| CTAACAAGGTTGGATTCAGA+TGG | 0.541951 | 3_2:-84546464 | None:intergenic |
| ATCATACCGTACACCGGAAG+GGG | 0.544137 | 3_2:+84546388 | Msa0432380:five_prime_UTR |
| GAATCCAACCTTGTTAGAGA+TGG | 0.562769 | 3_2:+84546470 | Msa0432380:CDS |
| ACTGCTCGCATTAAATCTGC+CGG | 0.564833 | 3_2:-84546425 | None:intergenic |
| GTTAGAGATGGATCCTTGGA+AGG | 0.569962 | 3_2:+84546482 | Msa0432380:CDS |
| CCAAGGATCCATCTCTAACA+AGG | 0.571002 | 3_2:-84546478 | None:intergenic |
| GGAGGACAGAACAAGTGGCC+AGG | 0.576153 | 3_2:-84546515 | None:intergenic |
| AGGAGAACAACTGTGAACCT+GGG | 0.585188 | 3_2:-84547982 | None:intergenic |
| ACAAGGTTGGATTCAGATGG+AGG | 0.590542 | 3_2:-84546461 | None:intergenic |
| GCATCATACCGTACACCGGA+AGG | 0.591339 | 3_2:+84546386 | Msa0432380:five_prime_UTR |
| GCCATGCAAAGAAATGAAGA+TGG | 0.598774 | 3_2:-84548141 | None:intergenic |
| TGTAGAAAATGGAAGGATGG+TGG | 0.598795 | 3_2:+84547121 | Msa0432380:CDS |
| TACTAGTAATTAGAAGTAGT+GGG | 0.605875 | 3_2:-84548022 | None:intergenic |
| CCATTTGTTTGACACAAGTG+GGG | 0.606405 | 3_2:+84547835 | Msa0432380:CDS |
| CATCATACCGTACACCGGAA+GGG | 0.607057 | 3_2:+84546387 | Msa0432380:five_prime_UTR |
| ATGCTTCTGTAGAAAATGGA+AGG | 0.608092 | 3_2:+84547114 | Msa0432380:CDS |
| GCAGGCATGGTGTTCACCGA+AGG | 0.611160 | 3_2:+84547075 | Msa0432380:CDS |
| AGTATTTAAAATGTTTGACA+TGG | 0.614530 | 3_2:+84546776 | Msa0432380:CDS |
| ATGCGATCTCATAGCAGGCA+TGG | 0.618266 | 3_2:+84547062 | Msa0432380:CDS |
| CCGAAGGAATGAACAACAGA+CGG | 0.621037 | 3_2:+84547091 | Msa0432380:CDS |
| CAAGGTTGGATTCAGATGGA+GGG | 0.621353 | 3_2:-84546460 | None:intergenic |
| GGGTATGTGCAAGTTCACTC+AGG | 0.625650 | 3_2:-84548002 | None:intergenic |
| TCTGTGGAGACAGGAATCAT+GGG | 0.628164 | 3_2:+84547923 | Msa0432380:CDS |
| CTGAAGGAGGACAGAACAAG+TGG | 0.631233 | 3_2:-84546520 | None:intergenic |
| TTCTGTAGAAAATGGAAGGA+TGG | 0.638791 | 3_2:+84547118 | Msa0432380:CDS |
| AGAAGAATTCAAAAGAGTGG+TGG | 0.641047 | 3_2:+84547034 | Msa0432380:CDS |
| GAGAGATGTTGGTCGATCTG+TGG | 0.651163 | 3_2:+84547907 | Msa0432380:CDS |
| TGTTTGACATGGATAATGAT+GGG | 0.657873 | 3_2:+84546787 | Msa0432380:CDS |
| GGAGAACAACTGTGAACCTG+GGG | 0.661112 | 3_2:-84547981 | None:intergenic |
| CTTTGCATCATACCGTACAC+CGG | 0.665578 | 3_2:+84546382 | Msa0432380:five_prime_UTR |
| AGTTTGTTAGAGTGCTACAG+AGG | 0.667536 | 3_2:+84547879 | Msa0432380:CDS |
| AATTTCTAATGGAAATGGAG+AGG | 0.669216 | 3_2:-84548117 | None:intergenic |
| ATAGTTGCTTCTGCAGACGT+GGG | 0.669384 | 3_2:+84547428 | Msa0432380:CDS |
| TTTATCTCTTTCTAACAACG+TGG | 0.689749 | 3_2:+84547799 | Msa0432380:CDS |
| ATGCGTACATCATTGAACTG+TGG | 0.737041 | 3_2:-84547497 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAAAACATGAAGAAAT+CGG | - | chr3_2:84547668-84547687 | None:intergenic | 15.0% |
| !! | TTTATAAAACATGAAGAAAT+CGG | - | chr3_2:84547668-84547687 | None:intergenic | 15.0% |
| !! | TTTATAAAACATGAAGAAAT+CGG | - | chr3_2:84547668-84547687 | None:intergenic | 15.0% |
| !! | TTTATAAAACATGAAGAAAT+CGG | - | chr3_2:84547668-84547687 | None:intergenic | 15.0% |
| !!! | AAAAGCATAAAAAATTCTGA+AGG | - | chr3_2:84546539-84546558 | None:intergenic | 20.0% |
| !!! | TTTATGCTTTTTGATGTAAA+CGG | + | chr3_2:84546548-84546567 | Msa0432380:CDS | 20.0% |
| !!! | TCTGGATTTTCTATTATTAT+GGG | + | chr3_2:84546603-84546622 | Msa0432380:intron | 20.0% |
| !!! | TGTGTCTAAAATCTTAATAA+TGG | + | chr3_2:84546683-84546702 | Msa0432380:intron | 20.0% |
| !!! | AGTATTTAAAATGTTTGACA+TGG | + | chr3_2:84546776-84546795 | Msa0432380:CDS | 20.0% |
| !! | TGATGCTAAATATTCAAATA+AGG | - | chr3_2:84546831-84546850 | None:intergenic | 20.0% |
| !! | TTTGAATATTTAGCATCAAT+TGG | + | chr3_2:84546833-84546852 | Msa0432380:intron | 20.0% |
| !! | GAATACTTATTTGATAAAGA+TGG | + | chr3_2:84547143-84547162 | Msa0432380:CDS | 20.0% |
| !! | TTATTTGATAAAGATGGAAA+AGG | + | chr3_2:84547149-84547168 | Msa0432380:CDS | 20.0% |
| !!! | AAAAGCATAAAAAATTCTGA+AGG | - | chr3_2:84546539-84546558 | None:intergenic | 20.0% |
| !!! | TTTATGCTTTTTGATGTAAA+CGG | + | chr3_2:84546548-84546567 | Msa0432380:CDS | 20.0% |
| !!! | TCTGGATTTTCTATTATTAT+GGG | + | chr3_2:84546603-84546622 | Msa0432380:intron | 20.0% |
| !!! | TGTGTCTAAAATCTTAATAA+TGG | + | chr3_2:84546683-84546702 | Msa0432380:intron | 20.0% |
| !!! | AGTATTTAAAATGTTTGACA+TGG | + | chr3_2:84546776-84546795 | Msa0432380:CDS | 20.0% |
| !! | TGATGCTAAATATTCAAATA+AGG | - | chr3_2:84546831-84546850 | None:intergenic | 20.0% |
| !! | TTTGAATATTTAGCATCAAT+TGG | + | chr3_2:84546833-84546852 | Msa0432380:intron | 20.0% |
| !! | GAATACTTATTTGATAAAGA+TGG | + | chr3_2:84547143-84547162 | Msa0432380:CDS | 20.0% |
| !! | TTATTTGATAAAGATGGAAA+AGG | + | chr3_2:84547149-84547168 | Msa0432380:CDS | 20.0% |
| ! | AATAAAAAAAACACCTTCTC+AGG | - | chr3_2:84546293-84546312 | None:intergenic | 25.0% |
| ! | CTGAATATGAGTTTACATTT+AGG | + | chr3_2:84546349-84546368 | Msa0432380:intron | 25.0% |
| !! | GTCTGGATTTTCTATTATTA+TGG | + | chr3_2:84546602-84546621 | Msa0432380:intron | 25.0% |
| ! | TGAAGATTTATTTGATCTCA+GGG | + | chr3_2:84546633-84546652 | Msa0432380:intron | 25.0% |
| ! | ATTCTCTCAAAATCTCAAAT+TGG | + | chr3_2:84546966-84546985 | Msa0432380:intron | 25.0% |
| ! | TAAAGAAGAATTCAAAAGAG+TGG | + | chr3_2:84547031-84547050 | Msa0432380:CDS | 25.0% |
| ! | TCACAAATTTATCATGTTTG+AGG | - | chr3_2:84547178-84547197 | None:intergenic | 25.0% |
| ! | AAAATTAGTACCACTATCAT+TGG | + | chr3_2:84547559-84547578 | Msa0432380:CDS | 25.0% |
| !! | TTCAGTTTTGCAAAAGTAAA+TGG | + | chr3_2:84547587-84547606 | Msa0432380:CDS | 25.0% |
| ! | GAAAATCATCTCTTGATAAA+AGG | - | chr3_2:84547613-84547632 | None:intergenic | 25.0% |
| !!! | ATTATGTTTTGTTCTGTTTC+AGG | + | chr3_2:84547769-84547788 | Msa0432380:intron | 25.0% |
| ! | TACTAGTAATTAGAAGTAGT+GGG | - | chr3_2:84548025-84548044 | None:intergenic | 25.0% |
| ! | ATACTAGTAATTAGAAGTAG+TGG | - | chr3_2:84548026-84548045 | None:intergenic | 25.0% |
| ! | CTACTTCTAATTACTAGTAT+TGG | + | chr3_2:84548026-84548045 | Msa0432380:three_prime_UTR | 25.0% |
| !!! | TAGTATTGGTAGAACATAAT+AGG | + | chr3_2:84548040-84548059 | Msa0432380:three_prime_UTR | 25.0% |
| ! | GTGCAAATAAAATGTTCTAA+TGG | + | chr3_2:84548174-84548193 | Msa0432380:three_prime_UTR | 25.0% |
| ! | AATAAAAAAAACACCTTCTC+AGG | - | chr3_2:84546293-84546312 | None:intergenic | 25.0% |
| ! | CTGAATATGAGTTTACATTT+AGG | + | chr3_2:84546349-84546368 | Msa0432380:intron | 25.0% |
| !! | GTCTGGATTTTCTATTATTA+TGG | + | chr3_2:84546602-84546621 | Msa0432380:intron | 25.0% |
| ! | TGAAGATTTATTTGATCTCA+GGG | + | chr3_2:84546633-84546652 | Msa0432380:intron | 25.0% |
| ! | ATTCTCTCAAAATCTCAAAT+TGG | + | chr3_2:84546966-84546985 | Msa0432380:intron | 25.0% |
| ! | TAAAGAAGAATTCAAAAGAG+TGG | + | chr3_2:84547031-84547050 | Msa0432380:CDS | 25.0% |
| ! | TCACAAATTTATCATGTTTG+AGG | - | chr3_2:84547178-84547197 | None:intergenic | 25.0% |
| ! | AAAATTAGTACCACTATCAT+TGG | + | chr3_2:84547559-84547578 | Msa0432380:CDS | 25.0% |
| !! | TTCAGTTTTGCAAAAGTAAA+TGG | + | chr3_2:84547587-84547606 | Msa0432380:CDS | 25.0% |
| ! | GAAAATCATCTCTTGATAAA+AGG | - | chr3_2:84547613-84547632 | None:intergenic | 25.0% |
| !!! | ATTATGTTTTGTTCTGTTTC+AGG | + | chr3_2:84547769-84547788 | Msa0432380:intron | 25.0% |
| ! | TACTAGTAATTAGAAGTAGT+GGG | - | chr3_2:84548025-84548044 | None:intergenic | 25.0% |
| ! | ATACTAGTAATTAGAAGTAG+TGG | - | chr3_2:84548026-84548045 | None:intergenic | 25.0% |
| ! | CTACTTCTAATTACTAGTAT+TGG | + | chr3_2:84548026-84548045 | Msa0432380:three_prime_UTR | 25.0% |
| !!! | TAGTATTGGTAGAACATAAT+AGG | + | chr3_2:84548040-84548059 | Msa0432380:three_prime_UTR | 25.0% |
| ! | GTGCAAATAAAATGTTCTAA+TGG | + | chr3_2:84548174-84548193 | Msa0432380:three_prime_UTR | 25.0% |
| ! | AGCATAAAAAATTCTGAAGG+AGG | - | chr3_2:84546536-84546555 | None:intergenic | 30.0% |
| GTGAAGATTTATTTGATCTC+AGG | + | chr3_2:84546632-84546651 | Msa0432380:intron | 30.0% | |
| ATGTTTGACATGGATAATGA+TGG | + | chr3_2:84546786-84546805 | Msa0432380:CDS | 30.0% | |
| TGTTTGACATGGATAATGAT+GGG | + | chr3_2:84546787-84546806 | Msa0432380:CDS | 30.0% | |
| AATTAGTTGAGTCCATCTTT+AGG | + | chr3_2:84547000-84547019 | Msa0432380:intron | 30.0% | |
| ATTAGTTGAGTCCATCTTTA+GGG | + | chr3_2:84547001-84547020 | Msa0432380:intron | 30.0% | |
| TTTATCTATCTCCCTAAAGA+TGG | - | chr3_2:84547015-84547034 | None:intergenic | 30.0% | |
| GTCAACGAAGTCATATATTT+AGG | - | chr3_2:84547269-84547288 | None:intergenic | 30.0% | |
| ! | GATTATCTGTGTAGATTTTG+AGG | + | chr3_2:84547339-84547358 | Msa0432380:intron | 30.0% |
| TCAAAAAACCATATCAGCTA+CGG | + | chr3_2:84547391-84547410 | Msa0432380:CDS | 30.0% | |
| ! | TCAAAATTTTTGCAGAACTG+AGG | + | chr3_2:84547534-84547553 | Msa0432380:CDS | 30.0% |
| TTTATCTCTTTCTAACAACG+TGG | + | chr3_2:84547799-84547818 | Msa0432380:CDS | 30.0% | |
| AATTTCTAATGGAAATGGAG+AGG | - | chr3_2:84548120-84548139 | None:intergenic | 30.0% | |
| ATGGCAATTTCTAATGGAAA+TGG | - | chr3_2:84548125-84548144 | None:intergenic | 30.0% | |
| ATGAAGATGGCAATTTCTAA+TGG | - | chr3_2:84548131-84548150 | None:intergenic | 30.0% | |
| ! | AGCATAAAAAATTCTGAAGG+AGG | - | chr3_2:84546536-84546555 | None:intergenic | 30.0% |
| GTGAAGATTTATTTGATCTC+AGG | + | chr3_2:84546632-84546651 | Msa0432380:intron | 30.0% | |
| ATGTTTGACATGGATAATGA+TGG | + | chr3_2:84546786-84546805 | Msa0432380:CDS | 30.0% | |
| TGTTTGACATGGATAATGAT+GGG | + | chr3_2:84546787-84546806 | Msa0432380:CDS | 30.0% | |
| AATTAGTTGAGTCCATCTTT+AGG | + | chr3_2:84547000-84547019 | Msa0432380:intron | 30.0% | |
| ATTAGTTGAGTCCATCTTTA+GGG | + | chr3_2:84547001-84547020 | Msa0432380:intron | 30.0% | |
| TTTATCTATCTCCCTAAAGA+TGG | - | chr3_2:84547015-84547034 | None:intergenic | 30.0% | |
| GTCAACGAAGTCATATATTT+AGG | - | chr3_2:84547269-84547288 | None:intergenic | 30.0% | |
| ! | GATTATCTGTGTAGATTTTG+AGG | + | chr3_2:84547339-84547358 | Msa0432380:intron | 30.0% |
| TCAAAAAACCATATCAGCTA+CGG | + | chr3_2:84547391-84547410 | Msa0432380:CDS | 30.0% | |
| ! | TCAAAATTTTTGCAGAACTG+AGG | + | chr3_2:84547534-84547553 | Msa0432380:CDS | 30.0% |
| TTTATCTCTTTCTAACAACG+TGG | + | chr3_2:84547799-84547818 | Msa0432380:CDS | 30.0% | |
| AATTTCTAATGGAAATGGAG+AGG | - | chr3_2:84548120-84548139 | None:intergenic | 30.0% | |
| ATGGCAATTTCTAATGGAAA+TGG | - | chr3_2:84548125-84548144 | None:intergenic | 30.0% | |
| ATGAAGATGGCAATTTCTAA+TGG | - | chr3_2:84548131-84548150 | None:intergenic | 30.0% | |
| AAAAAAAACACCTTCTCAGG+TGG | - | chr3_2:84546290-84546309 | None:intergenic | 35.0% | |
| !!! | CTGCTACTTTTTTTACCTCA+TGG | + | chr3_2:84546315-84546334 | Msa0432380:intron | 35.0% |
| ! | CTTTTTGATGTAAACGGTGA+CGG | + | chr3_2:84546554-84546573 | Msa0432380:CDS | 35.0% |
| !! | CTTTTAAAGAGTGAGTTGTC+TGG | + | chr3_2:84546585-84546604 | Msa0432380:intron | 35.0% |
| ATTTATTTGATCTCAGGGCA+AGG | + | chr3_2:84546638-84546657 | Msa0432380:intron | 35.0% | |
| ! | TGGTGTAATTTTACTGCAAC+AGG | + | chr3_2:84546703-84546722 | Msa0432380:intron | 35.0% |
| CTGCAACAGGTATTTATTCT+TGG | + | chr3_2:84546716-84546735 | Msa0432380:intron | 35.0% | |
| CTGCAGAAAAACTTGATTCT+GGG | - | chr3_2:84546758-84546777 | None:intergenic | 35.0% | |
| ACTGCAGAAAAACTTGATTC+TGG | - | chr3_2:84546759-84546778 | None:intergenic | 35.0% | |
| ACAATTTGTCGATCGTTCTT+AGG | - | chr3_2:84546931-84546950 | None:intergenic | 35.0% | |
| AGAAGAATTCAAAAGAGTGG+TGG | + | chr3_2:84547034-84547053 | Msa0432380:CDS | 35.0% | |
| ATGCTTCTGTAGAAAATGGA+AGG | + | chr3_2:84547114-84547133 | Msa0432380:CDS | 35.0% | |
| TTCTGTAGAAAATGGAAGGA+TGG | + | chr3_2:84547118-84547137 | Msa0432380:CDS | 35.0% | |
| ! | TTTAGGCACTGTCAACTTAT+AGG | - | chr3_2:84547252-84547271 | None:intergenic | 35.0% |
| ATCTGAGCAAGTTACTAGAA+AGG | + | chr3_2:84547453-84547472 | Msa0432380:CDS | 35.0% | |
| TCTGAGCAAGTTACTAGAAA+GGG | + | chr3_2:84547454-84547473 | Msa0432380:CDS | 35.0% | |
| TGATGTACGCATTACATTTG+AGG | + | chr3_2:84547508-84547527 | Msa0432380:CDS | 35.0% | |
| !! | TTTGTTCTGTTTCAGGTTTG+TGG | + | chr3_2:84547776-84547795 | Msa0432380:intron | 35.0% |
| TTCCATTTGTTTGACACAAG+TGG | + | chr3_2:84547833-84547852 | Msa0432380:CDS | 35.0% | |
| TCCATTTGTTTGACACAAGT+GGG | + | chr3_2:84547834-84547853 | Msa0432380:CDS | 35.0% | |
| AAAAAAAACACCTTCTCAGG+TGG | - | chr3_2:84546290-84546309 | None:intergenic | 35.0% | |
| !!! | CTGCTACTTTTTTTACCTCA+TGG | + | chr3_2:84546315-84546334 | Msa0432380:intron | 35.0% |
| ! | CTTTTTGATGTAAACGGTGA+CGG | + | chr3_2:84546554-84546573 | Msa0432380:CDS | 35.0% |
| !! | CTTTTAAAGAGTGAGTTGTC+TGG | + | chr3_2:84546585-84546604 | Msa0432380:intron | 35.0% |
| ATTTATTTGATCTCAGGGCA+AGG | + | chr3_2:84546638-84546657 | Msa0432380:intron | 35.0% | |
| ! | TGGTGTAATTTTACTGCAAC+AGG | + | chr3_2:84546703-84546722 | Msa0432380:intron | 35.0% |
| CTGCAACAGGTATTTATTCT+TGG | + | chr3_2:84546716-84546735 | Msa0432380:intron | 35.0% | |
| CTGCAGAAAAACTTGATTCT+GGG | - | chr3_2:84546758-84546777 | None:intergenic | 35.0% | |
| ACTGCAGAAAAACTTGATTC+TGG | - | chr3_2:84546759-84546778 | None:intergenic | 35.0% | |
| ACAATTTGTCGATCGTTCTT+AGG | - | chr3_2:84546931-84546950 | None:intergenic | 35.0% | |
| AGAAGAATTCAAAAGAGTGG+TGG | + | chr3_2:84547034-84547053 | Msa0432380:CDS | 35.0% | |
| ATGCTTCTGTAGAAAATGGA+AGG | + | chr3_2:84547114-84547133 | Msa0432380:CDS | 35.0% | |
| TTCTGTAGAAAATGGAAGGA+TGG | + | chr3_2:84547118-84547137 | Msa0432380:CDS | 35.0% | |
| ! | TTTAGGCACTGTCAACTTAT+AGG | - | chr3_2:84547252-84547271 | None:intergenic | 35.0% |
| ATCTGAGCAAGTTACTAGAA+AGG | + | chr3_2:84547453-84547472 | Msa0432380:CDS | 35.0% | |
| TCTGAGCAAGTTACTAGAAA+GGG | + | chr3_2:84547454-84547473 | Msa0432380:CDS | 35.0% | |
| TGATGTACGCATTACATTTG+AGG | + | chr3_2:84547508-84547527 | Msa0432380:CDS | 35.0% | |
| !! | TTTGTTCTGTTTCAGGTTTG+TGG | + | chr3_2:84547776-84547795 | Msa0432380:intron | 35.0% |
| TTCCATTTGTTTGACACAAG+TGG | + | chr3_2:84547833-84547852 | Msa0432380:CDS | 35.0% | |
| TCCATTTGTTTGACACAAGT+GGG | + | chr3_2:84547834-84547853 | Msa0432380:CDS | 35.0% | |
| TTCATAAGAACTTCCCCTTC+CGG | - | chr3_2:84546404-84546423 | None:intergenic | 40.0% | |
| AGGGGAAGTTCTTATGAAAC+CGG | + | chr3_2:84546406-84546425 | Msa0432380:exon | 40.0% | |
| CTAACAAGGTTGGATTCAGA+TGG | - | chr3_2:84546467-84546486 | None:intergenic | 40.0% | |
| GAATCCAACCTTGTTAGAGA+TGG | + | chr3_2:84546470-84546489 | Msa0432380:CDS | 40.0% | |
| GTTTAGCTATGAAGCACAAC+TGG | + | chr3_2:84546874-84546893 | Msa0432380:intron | 40.0% | |
| GCACAACTGGCATATACAAT+TGG | + | chr3_2:84546887-84546906 | Msa0432380:intron | 40.0% | |
| ACGGATGCTTCTGTAGAAAA+TGG | + | chr3_2:84547110-84547129 | Msa0432380:CDS | 40.0% | |
| TGTAGAAAATGGAAGGATGG+TGG | + | chr3_2:84547121-84547140 | Msa0432380:CDS | 40.0% | |
| !!! | ATCTGTGTAGATTTTGAGGC+TGG | + | chr3_2:84547343-84547362 | Msa0432380:intron | 40.0% |
| TGCAAAATCCGTAGCTGATA+TGG | - | chr3_2:84547402-84547421 | None:intergenic | 40.0% | |
| ATGCGTACATCATTGAACTG+TGG | - | chr3_2:84547500-84547519 | None:intergenic | 40.0% | |
| CTGAATAGAGCCAATGATAG+TGG | - | chr3_2:84547572-84547591 | None:intergenic | 40.0% | |
| CCATTTGTTTGACACAAGTG+GGG | + | chr3_2:84547835-84547854 | Msa0432380:CDS | 40.0% | |
| !! | AGTTTGTTAGAGTGCTACAG+AGG | + | chr3_2:84547879-84547898 | Msa0432380:CDS | 40.0% |
| GCCATCTTCATTTCTTTGCA+TGG | + | chr3_2:84548140-84548159 | Msa0432380:three_prime_UTR | 40.0% | |
| GCCATGCAAAGAAATGAAGA+TGG | - | chr3_2:84548144-84548163 | None:intergenic | 40.0% | |
| TTCATAAGAACTTCCCCTTC+CGG | - | chr3_2:84546404-84546423 | None:intergenic | 40.0% | |
| AGGGGAAGTTCTTATGAAAC+CGG | + | chr3_2:84546406-84546425 | Msa0432380:exon | 40.0% | |
| CTAACAAGGTTGGATTCAGA+TGG | - | chr3_2:84546467-84546486 | None:intergenic | 40.0% | |
| GAATCCAACCTTGTTAGAGA+TGG | + | chr3_2:84546470-84546489 | Msa0432380:CDS | 40.0% | |
| GTTTAGCTATGAAGCACAAC+TGG | + | chr3_2:84546874-84546893 | Msa0432380:intron | 40.0% | |
| GCACAACTGGCATATACAAT+TGG | + | chr3_2:84546887-84546906 | Msa0432380:intron | 40.0% | |
| ACGGATGCTTCTGTAGAAAA+TGG | + | chr3_2:84547110-84547129 | Msa0432380:CDS | 40.0% | |
| TGTAGAAAATGGAAGGATGG+TGG | + | chr3_2:84547121-84547140 | Msa0432380:CDS | 40.0% | |
| !!! | ATCTGTGTAGATTTTGAGGC+TGG | + | chr3_2:84547343-84547362 | Msa0432380:intron | 40.0% |
| TGCAAAATCCGTAGCTGATA+TGG | - | chr3_2:84547402-84547421 | None:intergenic | 40.0% | |
| ATGCGTACATCATTGAACTG+TGG | - | chr3_2:84547500-84547519 | None:intergenic | 40.0% | |
| CTGAATAGAGCCAATGATAG+TGG | - | chr3_2:84547572-84547591 | None:intergenic | 40.0% | |
| CCATTTGTTTGACACAAGTG+GGG | + | chr3_2:84547835-84547854 | Msa0432380:CDS | 40.0% | |
| !! | AGTTTGTTAGAGTGCTACAG+AGG | + | chr3_2:84547879-84547898 | Msa0432380:CDS | 40.0% |
| GCCATCTTCATTTCTTTGCA+TGG | + | chr3_2:84548140-84548159 | Msa0432380:three_prime_UTR | 40.0% | |
| GCCATGCAAAGAAATGAAGA+TGG | - | chr3_2:84548144-84548163 | None:intergenic | 40.0% | |
| TCAGAAACTCATGAGCCATG+AGG | - | chr3_2:84546333-84546352 | None:intergenic | 45.0% | |
| CTTTGCATCATACCGTACAC+CGG | + | chr3_2:84546382-84546401 | Msa0432380:five_prime_UTR | 45.0% | |
| ACTGCTCGCATTAAATCTGC+CGG | - | chr3_2:84546428-84546447 | None:intergenic | 45.0% | |
| GATTCAGATGGAGGGAAAAC+TGG | - | chr3_2:84546455-84546474 | None:intergenic | 45.0% | |
| CAAGGTTGGATTCAGATGGA+GGG | - | chr3_2:84546463-84546482 | None:intergenic | 45.0% | |
| ACAAGGTTGGATTCAGATGG+AGG | - | chr3_2:84546464-84546483 | None:intergenic | 45.0% | |
| GGATCCATCTCTAACAAGGT+TGG | - | chr3_2:84546477-84546496 | None:intergenic | 45.0% | |
| CCAAGGATCCATCTCTAACA+AGG | - | chr3_2:84546481-84546500 | None:intergenic | 45.0% | |
| CCTTGTTAGAGATGGATCCT+TGG | + | chr3_2:84546478-84546497 | Msa0432380:CDS | 45.0% | |
| GTTAGAGATGGATCCTTGGA+AGG | + | chr3_2:84546482-84546501 | Msa0432380:CDS | 45.0% | |
| CCGTCTGTTGTTCATTCCTT+CGG | - | chr3_2:84547094-84547113 | None:intergenic | 45.0% | |
| CCGAAGGAATGAACAACAGA+CGG | + | chr3_2:84547091-84547110 | Msa0432380:CDS | 45.0% | |
| ! | GACTTCGTTGACTAGATCAC+AGG | + | chr3_2:84547277-84547296 | Msa0432380:intron | 45.0% |
| ATAGTTGCTTCTGCAGACGT+GGG | + | chr3_2:84547428-84547447 | Msa0432380:CDS | 45.0% | |
| CCCCACTTGTGTCAAACAAA+TGG | - | chr3_2:84547838-84547857 | None:intergenic | 45.0% | |
| TTGTTTGACACAAGTGGGGA+TGG | + | chr3_2:84547839-84547858 | Msa0432380:CDS | 45.0% | |
| ATCTGTGGAGACAGGAATCA+TGG | + | chr3_2:84547922-84547941 | Msa0432380:CDS | 45.0% | |
| TCTGTGGAGACAGGAATCAT+GGG | + | chr3_2:84547923-84547942 | Msa0432380:CDS | 45.0% | |
| TGGGTTTCTTGTCATGCTGT+TGG | + | chr3_2:84547942-84547961 | Msa0432380:CDS | 45.0% | |
| AGGAGAACAACTGTGAACCT+GGG | - | chr3_2:84547985-84548004 | None:intergenic | 45.0% | |
| TCAGAAACTCATGAGCCATG+AGG | - | chr3_2:84546333-84546352 | None:intergenic | 45.0% | |
| CTTTGCATCATACCGTACAC+CGG | + | chr3_2:84546382-84546401 | Msa0432380:five_prime_UTR | 45.0% | |
| ACTGCTCGCATTAAATCTGC+CGG | - | chr3_2:84546428-84546447 | None:intergenic | 45.0% | |
| GATTCAGATGGAGGGAAAAC+TGG | - | chr3_2:84546455-84546474 | None:intergenic | 45.0% | |
| CAAGGTTGGATTCAGATGGA+GGG | - | chr3_2:84546463-84546482 | None:intergenic | 45.0% | |
| ACAAGGTTGGATTCAGATGG+AGG | - | chr3_2:84546464-84546483 | None:intergenic | 45.0% | |
| GGATCCATCTCTAACAAGGT+TGG | - | chr3_2:84546477-84546496 | None:intergenic | 45.0% | |
| CCAAGGATCCATCTCTAACA+AGG | - | chr3_2:84546481-84546500 | None:intergenic | 45.0% | |
| CCTTGTTAGAGATGGATCCT+TGG | + | chr3_2:84546478-84546497 | Msa0432380:CDS | 45.0% | |
| GTTAGAGATGGATCCTTGGA+AGG | + | chr3_2:84546482-84546501 | Msa0432380:CDS | 45.0% | |
| CCGTCTGTTGTTCATTCCTT+CGG | - | chr3_2:84547094-84547113 | None:intergenic | 45.0% | |
| CCGAAGGAATGAACAACAGA+CGG | + | chr3_2:84547091-84547110 | Msa0432380:CDS | 45.0% | |
| ! | GACTTCGTTGACTAGATCAC+AGG | + | chr3_2:84547277-84547296 | Msa0432380:intron | 45.0% |
| ATAGTTGCTTCTGCAGACGT+GGG | + | chr3_2:84547428-84547447 | Msa0432380:CDS | 45.0% | |
| CCCCACTTGTGTCAAACAAA+TGG | - | chr3_2:84547838-84547857 | None:intergenic | 45.0% | |
| TTGTTTGACACAAGTGGGGA+TGG | + | chr3_2:84547839-84547858 | Msa0432380:CDS | 45.0% | |
| ATCTGTGGAGACAGGAATCA+TGG | + | chr3_2:84547922-84547941 | Msa0432380:CDS | 45.0% | |
| TCTGTGGAGACAGGAATCAT+GGG | + | chr3_2:84547923-84547942 | Msa0432380:CDS | 45.0% | |
| TGGGTTTCTTGTCATGCTGT+TGG | + | chr3_2:84547942-84547961 | Msa0432380:CDS | 45.0% | |
| AGGAGAACAACTGTGAACCT+GGG | - | chr3_2:84547985-84548004 | None:intergenic | 45.0% | |
| GTTGCATAGTCCACCTGAGA+AGG | + | chr3_2:84546277-84546296 | Msa0432380:five_prime_UTR | 50.0% | |
| CATCATACCGTACACCGGAA+GGG | + | chr3_2:84546387-84546406 | Msa0432380:five_prime_UTR | 50.0% | |
| ATCATACCGTACACCGGAAG+GGG | + | chr3_2:84546388-84546407 | Msa0432380:five_prime_UTR | 50.0% | |
| AGGACATCTTTCGCCTTCCA+AGG | - | chr3_2:84546498-84546517 | None:intergenic | 50.0% | |
| TTGGAAGGCGAAAGATGTCC+TGG | + | chr3_2:84546497-84546516 | Msa0432380:CDS | 50.0% | |
| CTGAAGGAGGACAGAACAAG+TGG | - | chr3_2:84546523-84546542 | None:intergenic | 50.0% | |
| CATCGATGCGATCTCATAGC+AGG | + | chr3_2:84547057-84547076 | Msa0432380:CDS | 50.0% | |
| ATGCGATCTCATAGCAGGCA+TGG | + | chr3_2:84547062-84547081 | Msa0432380:CDS | 50.0% | |
| CACGTCTGCAGAAGCAACTA+TGG | - | chr3_2:84547429-84547448 | None:intergenic | 50.0% | |
| CATAGTTGCTTCTGCAGACG+TGG | + | chr3_2:84547427-84547446 | Msa0432380:CDS | 50.0% | |
| GAGAGATGTTGGTCGATCTG+TGG | + | chr3_2:84547907-84547926 | Msa0432380:CDS | 50.0% | |
| AACTGTACAGACACTTCCCC+AGG | + | chr3_2:84547965-84547984 | Msa0432380:CDS | 50.0% | |
| GGAGAACAACTGTGAACCTG+GGG | - | chr3_2:84547984-84548003 | None:intergenic | 50.0% | |
| CAGGAGAACAACTGTGAACC+TGG | - | chr3_2:84547986-84548005 | None:intergenic | 50.0% | |
| GGGTATGTGCAAGTTCACTC+AGG | - | chr3_2:84548005-84548024 | None:intergenic | 50.0% | |
| GTTGCATAGTCCACCTGAGA+AGG | + | chr3_2:84546277-84546296 | Msa0432380:five_prime_UTR | 50.0% | |
| CATCATACCGTACACCGGAA+GGG | + | chr3_2:84546387-84546406 | Msa0432380:five_prime_UTR | 50.0% | |
| ATCATACCGTACACCGGAAG+GGG | + | chr3_2:84546388-84546407 | Msa0432380:five_prime_UTR | 50.0% | |
| AGGACATCTTTCGCCTTCCA+AGG | - | chr3_2:84546498-84546517 | None:intergenic | 50.0% | |
| TTGGAAGGCGAAAGATGTCC+TGG | + | chr3_2:84546497-84546516 | Msa0432380:CDS | 50.0% | |
| CTGAAGGAGGACAGAACAAG+TGG | - | chr3_2:84546523-84546542 | None:intergenic | 50.0% | |
| CATCGATGCGATCTCATAGC+AGG | + | chr3_2:84547057-84547076 | Msa0432380:CDS | 50.0% | |
| ATGCGATCTCATAGCAGGCA+TGG | + | chr3_2:84547062-84547081 | Msa0432380:CDS | 50.0% | |
| CACGTCTGCAGAAGCAACTA+TGG | - | chr3_2:84547429-84547448 | None:intergenic | 50.0% | |
| CATAGTTGCTTCTGCAGACG+TGG | + | chr3_2:84547427-84547446 | Msa0432380:CDS | 50.0% | |
| GAGAGATGTTGGTCGATCTG+TGG | + | chr3_2:84547907-84547926 | Msa0432380:CDS | 50.0% | |
| AACTGTACAGACACTTCCCC+AGG | + | chr3_2:84547965-84547984 | Msa0432380:CDS | 50.0% | |
| GGAGAACAACTGTGAACCTG+GGG | - | chr3_2:84547984-84548003 | None:intergenic | 50.0% | |
| CAGGAGAACAACTGTGAACC+TGG | - | chr3_2:84547986-84548005 | None:intergenic | 50.0% | |
| GGGTATGTGCAAGTTCACTC+AGG | - | chr3_2:84548005-84548024 | None:intergenic | 50.0% | |
| GCATCATACCGTACACCGGA+AGG | + | chr3_2:84546386-84546405 | Msa0432380:five_prime_UTR | 55.0% | |
| GAACTTCCCCTTCCGGTGTA+CGG | - | chr3_2:84546397-84546416 | None:intergenic | 55.0% | |
| ! | CAGAGGCGTGAGAGAGATGT+TGG | + | chr3_2:84547896-84547915 | Msa0432380:CDS | 55.0% |
| GTTGGTCGATCTGTGGAGAC+AGG | + | chr3_2:84547914-84547933 | Msa0432380:CDS | 55.0% | |
| !! | CAGGTGGACTATGCAACCGT+CGG | - | chr3_2:84546274-84546293 | None:intergenic | 55.0% |
| GCATCATACCGTACACCGGA+AGG | + | chr3_2:84546386-84546405 | Msa0432380:five_prime_UTR | 55.0% | |
| GAACTTCCCCTTCCGGTGTA+CGG | - | chr3_2:84546397-84546416 | None:intergenic | 55.0% | |
| ! | CAGAGGCGTGAGAGAGATGT+TGG | + | chr3_2:84547896-84547915 | Msa0432380:CDS | 55.0% |
| GTTGGTCGATCTGTGGAGAC+AGG | + | chr3_2:84547914-84547933 | Msa0432380:CDS | 55.0% | |
| GGAGGACAGAACAAGTGGCC+AGG | - | chr3_2:84546518-84546537 | None:intergenic | 60.0% | |
| GCAGGCATGGTGTTCACCGA+AGG | + | chr3_2:84547075-84547094 | Msa0432380:CDS | 60.0% | |
| GGAGGACAGAACAAGTGGCC+AGG | - | chr3_2:84546518-84546537 | None:intergenic | 60.0% | |
| GCAGGCATGGTGTTCACCGA+AGG | + | chr3_2:84547075-84547094 | Msa0432380:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 84546274 | 84548199 | 84546274 | ID=Msa0432380;Name=Msa0432380 |
| chr3_2 | mRNA | 84546274 | 84548199 | 84546274 | ID=Msa0432380-mRNA-1;Parent=Msa0432380;Name=Msa0432380-mRNA-1;_AED=0.17;_eAED=0.17;_QI=73|1|1|1|0.8|0.66|6|193|324 |
| chr3_2 | exon | 84546274 | 84546298 | 84546274 | ID=Msa0432380-mRNA-1:exon:23907;Parent=Msa0432380-mRNA-1 |
| chr3_2 | exon | 84546371 | 84546594 | 84546371 | ID=Msa0432380-mRNA-1:exon:23908;Parent=Msa0432380-mRNA-1 |
| chr3_2 | exon | 84546725 | 84546808 | 84546725 | ID=Msa0432380-mRNA-1:exon:23909;Parent=Msa0432380-mRNA-1 |
| chr3_2 | exon | 84547022 | 84547223 | 84547022 | ID=Msa0432380-mRNA-1:exon:23910;Parent=Msa0432380-mRNA-1 |
| chr3_2 | exon | 84547353 | 84547649 | 84547353 | ID=Msa0432380-mRNA-1:exon:23911;Parent=Msa0432380-mRNA-1 |
| chr3_2 | exon | 84547791 | 84548199 | 84547791 | ID=Msa0432380-mRNA-1:exon:23912;Parent=Msa0432380-mRNA-1 |
| chr3_2 | five_prime_UTR | 84546274 | 84546298 | 84546274 | ID=Msa0432380-mRNA-1:five_prime_utr;Parent=Msa0432380-mRNA-1 |
| chr3_2 | five_prime_UTR | 84546371 | 84546418 | 84546371 | ID=Msa0432380-mRNA-1:five_prime_utr;Parent=Msa0432380-mRNA-1 |
| chr3_2 | CDS | 84546419 | 84546594 | 84546419 | ID=Msa0432380-mRNA-1:cds;Parent=Msa0432380-mRNA-1 |
| chr3_2 | CDS | 84546725 | 84546808 | 84546725 | ID=Msa0432380-mRNA-1:cds;Parent=Msa0432380-mRNA-1 |
| chr3_2 | CDS | 84547022 | 84547223 | 84547022 | ID=Msa0432380-mRNA-1:cds;Parent=Msa0432380-mRNA-1 |
| chr3_2 | CDS | 84547353 | 84547649 | 84547353 | ID=Msa0432380-mRNA-1:cds;Parent=Msa0432380-mRNA-1 |
| chr3_2 | CDS | 84547791 | 84548006 | 84547791 | ID=Msa0432380-mRNA-1:cds;Parent=Msa0432380-mRNA-1 |
| chr3_2 | three_prime_UTR | 84548007 | 84548199 | 84548007 | ID=Msa0432380-mRNA-1:three_prime_utr;Parent=Msa0432380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
