AlfalfaGEDB | Msa0363200

M. sativa cultivar zhongmu-4 / Msa0363200

KEGG: -
GO: GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0040008 GO:0044464 GO:0048367 GO:0048437 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0099402
PFAM: PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363200	XP_013459583.2	89.028	957	44	2	1	896	19	975	0.0	1643

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363200	sp\|O65440\|BAME3_ARATH	59.645	959	311	15	7	896	8	959	0.0	1049

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363200	A0A396IN78	89.028	957	44	2	1	896	19	975	0.0	1643

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0363200	0.813141	2.974379e-51	-8.615850e-47
Msa0000190	Msa0363200	0.830373	3.045940e-55	-8.615850e-47
Msa0003700	Msa0363200	0.816439	5.526163e-52	-8.615850e-47
Msa0003890	Msa0363200	0.801647	8.156470e-49	-8.615850e-47
Msa0004640	Msa0363200	0.803066	4.161931e-49	-8.615850e-47
Msa0005890	Msa0363200	0.816168	6.356240e-52	-8.615850e-47
Msa0017510	Msa0363200	0.856487	3.111639e-62	-8.615850e-47
Msa0021960	Msa0363200	0.809805	1.578038e-50	-8.615850e-47
Msa0024550	Msa0363200	0.823995	1.025602e-53	-8.615850e-47
Msa0025330	Msa0363200	0.817086	3.956820e-52	-8.615850e-47

Showing 1 to 10 of 498 entries

Previous1 2 3 4 5…50Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363200	MtrunA17_Chr3g0095081	89.028	957	44	2	1	896	19	975	0.0	1643
Msa0363200	MtrunA17_Chr5g0442151	70.638	940	224	11	1	896	1	932	0.0	1272
Msa0363200	MtrunA17_Chr2g0277081	60.658	821	306	7	78	896	129	934	0.0	972
Msa0363200	MtrunA17_Chr2g0277081	31.754	422	222	11	208	570	68	482	5.59e-33	137
Msa0363200	MtrunA17_Chr5g0400681	57.650	817	334	8	81	896	134	939	0.0	944
Msa0363200	MtrunA17_Chr5g0400681	33.907	407	241	3	134	539	67	446	7.99e-44	172
Msa0363200	MtrunA17_Chr5g0400681	35.933	359	222	3	183	540	72	423	3.96e-41	164
Msa0363200	MtrunA17_Chr5g0400681	31.741	293	197	2	77	368	299	589	3.06e-30	129
Msa0363200	MtrunA17_Chr5g0400681	30.539	334	228	2	78	408	276	608	1.97e-29	126
Msa0363200	MtrunA17_Chr4g0054521	57.439	820	336	7	78	896	129	936	0.0	942

Showing 1 to 10 of 1,171 entries

Previous1 2 3 4 5…118Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0363200	AT4G20270.1	59.645	959	311	15	7	896	8	959	0.0	1049
Msa0363200	AT5G65700.1	57.934	813	329	7	85	896	141	941	0.0	937
Msa0363200	AT5G65700.1	34.167	360	231	4	184	540	70	426	9.60e-40	159
Msa0363200	AT5G65700.1	32.873	362	216	4	81	442	258	592	8.37e-38	153
Msa0363200	AT5G65700.1	33.127	323	198	4	47	368	287	592	2.08e-33	139
Msa0363200	AT5G65700.2	57.934	813	329	7	85	896	141	941	0.0	937
Msa0363200	AT5G65700.2	34.167	360	231	4	184	540	70	426	9.60e-40	159
Msa0363200	AT5G65700.2	32.873	362	216	4	81	442	258	592	8.37e-38	153
Msa0363200	AT5G65700.2	33.127	323	198	4	47	368	287	592	2.08e-33	139
Msa0363200	AT3G49670.1	58.180	813	323	8	85	896	141	937	0.0	929

Showing 1 to 10 of 1,000 entries

Previous1 2 3 4 5…100Next

Find 163 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCTTAAACTTTCC+AGG	0.320198	3_1:+55393429	None:intergenic
AAAAGTGATGTGTATAGTTT+TGG	0.335406	3_1:-55391186	Msa0363200:CDS
AAAGAAGCTTAAACTTTCCA+GGG	0.580848	3_1:+55393430	None:intergenic
AAAGAGCTAGGAGCCTTAAA+GGG	0.522390	3_1:-55393651	Msa0363200:CDS
AAATTGTTAGGAATCAACAA+AGG	0.740300	3_1:-55393174	Msa0363200:CDS
AACACATAACCACATAGTTG+AGG	0.628993	3_1:+55393531	None:intergenic
AACTAATTGGAACAAAGATA+TGG	0.420066	3_1:-55391073	Msa0363200:CDS
AACTTCCAATTTAGGAAGCT+CGG	0.460630	3_1:+55394367	None:intergenic
AAGGTAGAAAATGAGAGGAG+TGG	0.646826	3_1:+55395364	None:intergenic
AAGGTTTAGACATTGTTCAA+TGG	0.492895	3_1:-55391107	Msa0363200:CDS

Showing 1 to 10 of 163 entries

Previous1 2 3 4 5…17Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATTGAAGGAAAACTAGTGA+AGG	+	chr3_1:55390463-55390482	None:intergenic	30.0%
AGTTGAAGTGAAGAAATTGA+AGG	+	chr3_1:55390477-55390496	None:intergenic	30.0%
CTAACACTTCTTTAAGTAGT+TGG	-	chr3_1:55390556-55390575	Msa0363200:intron	30.0%
AAACTATAGACATGTTGGTA+TGG	+	chr3_1:55390632-55390651	None:intergenic	30.0%
AAGTGAAACTATAGACATGT+TGG	+	chr3_1:55390637-55390656	None:intergenic	30.0%
CTTGGATTGAAACATTTACA+AGG	+	chr3_1:55390718-55390737	None:intergenic	30.0%
CTTGTAAATGTTTCAATCCA+AGG	-	chr3_1:55390716-55390735	Msa0363200:intron	30.0%
GTGTTGGATATTTACAACAA+TGG	-	chr3_1:55390865-55390884	Msa0363200:intron	30.0%
TTGCAAAAAAATCAACTCAC+TGG	-	chr3_1:55391237-55391256	Msa0363200:intron	30.0%
CTACTCAAATTACCTAATTC+AGG	+	chr3_1:55391273-55391292	None:intergenic	30.0%

Showing 1 to 10 of 295 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	55390423	55395390	55390423	ID=Msa0363200;Name=Msa0363200
chr3_1	mRNA	55390423	55395390	55390423	ID=Msa0363200-mRNA-1;Parent=Msa0363200;Name=Msa0363200-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0.25\|0\|1\|1\|1\|5\|0\|920
chr3_1	exon	55395203	55395390	55395203	ID=Msa0363200-mRNA-1:exon:10139;Parent=Msa0363200-mRNA-1
chr3_1	exon	55395095	55395131	55395095	ID=Msa0363200-mRNA-1:exon:10138;Parent=Msa0363200-mRNA-1
chr3_1	exon	55392755	55394990	55392755	ID=Msa0363200-mRNA-1:exon:10137;Parent=Msa0363200-mRNA-1
chr3_1	exon	55391017	55391237	55391017	ID=Msa0363200-mRNA-1:exon:10136;Parent=Msa0363200-mRNA-1
chr3_1	exon	55390423	55390503	55390423	ID=Msa0363200-mRNA-1:exon:10135;Parent=Msa0363200-mRNA-1
chr3_1	CDS	55395203	55395390	55395203	ID=Msa0363200-mRNA-1:cds;Parent=Msa0363200-mRNA-1
chr3_1	CDS	55395095	55395131	55395095	ID=Msa0363200-mRNA-1:cds;Parent=Msa0363200-mRNA-1
chr3_1	CDS	55392755	55394990	55392755	ID=Msa0363200-mRNA-1:cds;Parent=Msa0363200-mRNA-1
chr3_1	CDS	55391017	55391237	55391017	ID=Msa0363200-mRNA-1:cds;Parent=Msa0363200-mRNA-1
chr3_1	CDS	55390423	55390503	55390423	ID=Msa0363200-mRNA-1:cds;Parent=Msa0363200-mRNA-1

Gene Sequence

>Msa0363200

ATGGCCACTCCTCTCATTTTCTACCTTCTACTTGTTTCCTTCACTAGTTTTCCTTCAATTTCTTCACTTCAACTTTCTTTGAAAACTCAAGCTTCAATCTTAGTTTCAATGAAACAAGATTTTGAACCTTCTTCTAACACTTCTTTAAGTAGTTGGAACATGTCTAACTACATGTCACTTTGTACTTGGTTCATTTTCACCTCTCATCACAAAACTCCAAACCTTTGGAAACTTGAGTTGGAGTTCAAGAAATTGAAAGAGCTTGAAGTGTTGGATATTTACAACAATGGTTTCAATGGTTCACTTCCTCATGGTGTTACTCAGGTTTCAAGTCTCAAGCATTTGAATTTTGGAGGGAATTACTTTTCTGGAAAAATTCCTAGAGCTTATGGAGAAATGAAACAGCTTAATTTTTTGTCTCTTGCTGGAAATGATTTAAGTGGTTTTTTACCTAGTGAGCTTGGAAACTTAACAAGTTTGGAAAATCTTTATTTAGGTTATTTCAATCAATTTGATGGTGGAGTTCCAAAAGAGTTTGGTAAGTTGATTAATTTGGTTCATTTAGACCTAGCAAGTTGTTTCTTGAAAGGTTCAATTCCACATGAGTTAGGTCAACTTAACAAGCTAGATACACTTTTCTTGCAAAAAAATCAACTCACTGGTTTTATTCCACCTGAATTAGGTAATTTGAGTAGATTGAATGCTCTTGATTTATCACTCAATAACCTAACAGGAGGAATTCCGAACGAATTCTCGAACCTTCTACAACTTTCTCTTTTGAACTTGTTTATCAACAAGTTTCACGGCGAAATTCCTGATTTCATTTCCGAGCTTCCTAAATTGGAAGTTCTTAAGCTTTGGAGGAATAACTTTACTGGAGTTATTCCTTCAAAGCTAGGTCAGAATGGAAGATTAACCGAGGTTGATTTGTCGACAAATAAACTCACTGGAATATTGCCAAAATCACTTTGCTTTGGGAAGAGACTAAAGATTTTGATCTTGCTTAACAATTTTTTGTTTGGTTCTTTGCCTAATGATCTTGGTCAATGCTACACACTCCAAAGAGTTAGAATTGGTCAAAACTATTTGACTGGTTCAATTCCACATGGTTTTCTTTACTTACCAAATCTATCTCTTTTGGAACTACAGAACAATTATCTCAGTGGTGTGATTCCACAACAAACACATAAAAACAAAACCTCCAAATTAGAACAATGTAATCTATCAAACAATAGGTTATCAGGTTCTTTACCAACCTCAATTGGAAATTTTCCAAATTTGCAAACTCTTCAACTTAGTGGAAACAGATTCTCAGGTGAAATTCCATCAGATATAGGAAAACTCAAAAATATTCTCAAATTAGATATAAGCAGCAACAACTTTTCAGGTACTATTCCAAGTGAAATAGGTAAATGTACCTTACTAACTTATTTGGATTTGAGTCAAAACCAATTTTCAGGTCCTATTCCAATTCAACTTGCTCAAATTCATATACTAAACCATCTTAATGTCTCATGGAATCACTTAAACCAAAGCCTTCCTAAAGAGCTAGGAGCCTTAAAGGGCTTAACTTCAGCAGATTTCTCTCACAATAACTTCTCCGGTTCGATACCAGAAGGAGGACAATTCTCAACTTTTAAGCCAACTTCCTTTGAAGGTAATCCTCAACTATGTGGTTATGTGTTGAGTGAGTTCAATCCATGCAAAGTTTCTTCAACAGATGAATCAGAATCTCAACAAAAAAACGGTTCGAGAAACGGTTTCCCTGGAAAGTTTAAGCTTCTTTTCGCGTTGGCGTTATTGTTATGTTCGTTGGTTTTTGTAACTTTAGCTATCATGAAGAGTAGAAAATCGAGGAGGAATCATTCAAGTTCATGGAAATTAACAGCATTTCAGAAGATGGAATATGGAAGTGAAGAAATCATAGGTTGCATAAAGGAAAGCAATGTGATAGGAAGAGGTGGAGCAGGTGTTGTGTACAAAGGAACAATGCCAAATGGAGATGAAATTGCTGTGAAGAAATTGTTAGGAATCAACAAAGGAAATTCTTCTTCTCATGCTGATAATGGCTTTTCGGCTGAAATTAAGACATTAGGTAGAATCAGACACAGGTATATTGTTAGGTTGGTTGCATTTTGTACAAACAAAGAAACAAATTTGCTTGTTTATGATTATATGGAAAATGGTAGCCTTGGTGAAGTTTTGCATGGGAAAAGAGGTGAGTTTTTGAAATGGGATGTTAGGTTGAAAATTGCTGTTGAAGCTGCTAAAGGACTTTGTTATTTGCATCATGATTGTTCACCTTTGATCATTCATAGAGATGTTAAGTCAAATAATATATTGTTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCTAAGTTCTTGCAAGATAATGGGAATTCAGAATGCATGTCTTCTATTGCTGGTTCTTATGGATATATTGCTCCAGAATATGCATACACATTGAAAGTTGATGAGAAAAGTGATGTGTATAGTTTTGGAGTGGTGCTGCTAGAACTCATCACAGGGAAAAGGCCAGTGGGGGATTTTGAGGAAGAAGGTTTAGACATTGTTCAATGGACCAAAATGAAAACTAATTGGAACAAAGATATGGTGATGAAGATCCTTGATGAGAGGCTACCTCAAATTCCTTTAGATGAAGCAAAACAATCTTTTGCTGATGAGAATATCATGGCTGGTGTTAAAATGGCCTTGAAATTTCCATTACCCAATTACAAGGCCTACGCATAG

Protein sequence

>Msa0363200

MATPLIFYLLLVSFTSFPSISSLQLSLKTQASILVSMKQDFEPSSNTSLSSWNMSNYMSLCTWFIFTSHHKTPNLWKLELEFKKLKELEVLDIYNNGFNGSLPHGVTQVSSLKHLNFGGNYFSGKIPRAYGEMKQLNFLSLAGNDLSGFLPSELGNLTSLENLYLGYFNQFDGGVPKEFGKLINLVHLDLASCFLKGSIPHELGQLNKLDTLFLQKNQLTGFIPPELGNLSRLNALDLSLNNLTGGIPNEFSNLLQLSLLNLFINKFHGEIPDFISELPKLEVLKLWRNNFTGVIPSKLGQNGRLTEVDLSTNKLTGILPKSLCFGKRLKILILLNNFLFGSLPNDLGQCYTLQRVRIGQNYLTGSIPHGFLYLPNLSLLELQNNYLSGVIPQQTHKNKTSKLEQCNLSNNRLSGSLPTSIGNFPNLQTLQLSGNRFSGEIPSDIGKLKNILKLDISSNNFSGTIPSEIGKCTLLTYLDLSQNQFSGPIPIQLAQIHILNHLNVSWNHLNQSLPKELGALKGLTSADFSHNNFSGSIPEGGQFSTFKPTSFEGNPQLCGYVLSEFNPCKVSSTDESESQQKNGSRNGFPGKFKLLFALALLLCSLVFVTLAIMKSRKSRRNHSSSWKLTAFQKMEYGSEEIIGCIKESNVIGRGGAGVVYKGTMPNGDEIAVKKLLGINKGNSSSHADNGFSAEIKTLGRIRHRYIVRLVAFCTNKETNLLVYDYMENGSLGEVLHGKRGEFLKWDVRLKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFLQDNGNSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGKRPVGDFEEEGLDIVQWTKMKTNWNKDMVMKILDERLPQIPLDEAKQSFADENIMAGVKMALKFPLPNYKAYA*