AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0156240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156240 MtrunA17_Chr1g0167381 98.403 626 10 0 1 626 1 626 0.0 1291
Msa0156240 MtrunA17_Chr1g0187601 82.692 624 107 1 1 624 1 623 0.0 1061
Msa0156240 MtrunA17_Chr1g0183721 68.590 624 162 5 1 622 1 592 0.0 923
Msa0156240 MtrunA17_Chr3g0112341 44.925 532 270 8 64 588 129 644 9.67e-162 479
Msa0156240 MtrunA17_Chr1g0159741 46.004 513 253 10 92 594 141 639 1.58e-161 478
Msa0156240 MtrunA17_Chr1g0171781 45.714 525 273 6 94 615 88 603 2.19e-158 468
Msa0156240 MtrunA17_Chr5g0435751 43.045 532 257 8 64 588 104 596 5.31e-157 465
Msa0156240 MtrunA17_Chr8g0388881 45.018 542 265 12 90 615 96 620 1.17e-155 461
Msa0156240 MtrunA17_Chr3g0130381 45.841 541 255 16 101 624 268 787 1.70e-152 459
Msa0156240 MtrunA17_Chr1g0203741 44.790 547 260 14 91 615 91 617 4.52e-152 452
Msa0156240 MtrunA17_Chr7g0246701 44.898 539 266 12 93 615 102 625 1.03e-150 449
Msa0156240 MtrunA17_Chr8g0361791 39.870 617 320 14 18 617 20 602 7.17e-150 446
Msa0156240 MtrunA17_Chr5g0437501 45.291 499 250 9 101 587 101 588 1.37e-149 446
Msa0156240 MtrunA17_Chr4g0055031 42.491 546 274 12 90 618 84 606 1.22e-148 443
Msa0156240 MtrunA17_Chr8g0350391 42.357 543 277 11 92 615 105 630 3.42e-148 443
Msa0156240 MtrunA17_Chr3g0125511 45.149 536 257 16 100 619 232 746 6.96e-148 446
Msa0156240 MtrunA17_Chr7g0246681 40.493 568 309 9 55 615 42 587 7.31e-148 440
Msa0156240 MtrunA17_Chr6g0472571 42.202 545 281 12 92 620 105 631 2.10e-147 441
Msa0156240 MtrunA17_Chr5g0416991 39.937 636 328 15 1 617 1 601 3.97e-147 439
Msa0156240 MtrunA17_Chr8g0384431 45.437 504 248 12 101 590 298 788 3.41e-146 443
Msa0156240 MtrunA17_Chr8g0350351 41.210 529 284 8 95 615 91 600 7.24e-146 436
Msa0156240 MtrunA17_Chr8g0369481 40.331 543 287 9 92 618 70 591 3.32e-143 429
Msa0156240 MtrunA17_Chr5g0409411 38.339 626 328 11 10 620 13 595 3.14e-141 424
Msa0156240 MtrunA17_Chr8g0372471 44.289 499 254 10 100 588 386 870 7.23e-141 432
Msa0156240 MtrunA17_Chr3g0092501 40.375 587 302 14 14 587 21 572 3.41e-138 416
Msa0156240 MtrunA17_Chr3g0113981 44.106 492 255 9 101 587 175 651 3.91e-138 418
Msa0156240 MtrunA17_Chr7g0214551 41.756 558 292 15 74 611 23 567 1.56e-136 410
Msa0156240 MtrunA17_Chr5g0426281 36.545 550 302 12 90 615 144 670 1.26e-116 362
Msa0156240 MtrunA17_Chr3g0115931 36.754 536 306 11 90 601 152 678 1.73e-115 360
Msa0156240 MtrunA17_Chr1g0155141 35.000 580 324 15 55 615 154 699 1.77e-105 334
Msa0156240 MtrunA17_Chr5g0404771 50.391 256 111 5 100 354 328 568 4.69e-80 264
Msa0156240 MtrunA17_Chr5g0404761 40.996 261 133 9 342 588 1 254 3.68e-58 197
Msa0156240 MtrunA17_Chr4g0043121 32.845 341 210 8 90 418 84 417 2.35e-57 199
Msa0156240 MtrunA17_Chr4g0043131 42.775 173 81 3 446 601 2 173 1.12e-39 143
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156240 AT1G04430.1 75.556 630 140 5 1 624 1 622 0.0 1016
Msa0156240 AT1G04430.3 75.556 630 140 5 1 624 1 622 0.0 1016
Msa0156240 AT1G04430.2 75.556 630 140 5 1 624 1 622 0.0 1016
Msa0156240 AT3G23300.2 74.879 621 143 3 3 623 2 609 0.0 981
Msa0156240 AT3G23300.1 74.879 621 143 3 3 623 2 609 0.0 981
Msa0156240 AT4G14360.1 74.718 621 141 4 3 623 2 606 0.0 957
Msa0156240 AT4G14360.2 74.718 621 141 4 3 623 2 606 0.0 957
Msa0156240 AT5G14430.1 61.889 593 218 4 27 615 16 604 0.0 764
Msa0156240 AT5G14430.2 61.383 593 221 4 27 615 16 604 0.0 758
Msa0156240 AT5G06050.1 43.494 561 292 10 35 587 96 639 1.13e-166 492
Msa0156240 AT2G39750.1 46.535 505 251 8 90 587 175 667 6.31e-165 488
Msa0156240 AT1G77260.1 45.908 501 250 8 94 587 145 631 2.07e-164 485
Msa0156240 AT3G10200.1 45.028 533 279 7 87 615 66 588 2.07e-161 475
Msa0156240 AT5G04060.1 44.656 524 277 7 94 615 85 597 6.26e-158 467
Msa0156240 AT1G33170.1 45.437 515 253 10 90 588 108 610 1.18e-155 462
Msa0156240 AT4G10440.1 45.437 515 252 11 90 588 91 592 7.23e-155 460
Msa0156240 AT2G45750.1 45.841 517 250 9 91 588 86 591 1.00e-153 457
Msa0156240 AT3G51070.1 45.122 574 275 16 32 588 319 869 1.57e-153 465
Msa0156240 AT3G10200.2 47.292 480 241 6 87 562 66 537 4.18e-152 452
Msa0156240 AT2G34300.2 45.083 539 261 15 101 624 250 768 7.84e-150 452
Msa0156240 AT2G34300.3 45.083 539 261 15 101 624 250 768 7.84e-150 452
Msa0156240 AT2G34300.1 45.083 539 261 15 101 624 250 768 7.84e-150 452
Msa0156240 AT1G29470.1 45.591 533 257 14 101 620 250 762 1.34e-149 451
Msa0156240 AT1G29470.2 45.591 533 257 14 101 620 250 762 1.34e-149 451
Msa0156240 AT4G19120.1 37.942 622 328 10 11 620 20 595 8.50e-149 443
Msa0156240 AT4G19120.2 37.942 622 328 10 11 620 20 595 8.50e-149 443
Msa0156240 AT5G64030.1 42.509 574 293 15 62 619 268 820 1.68e-147 447
Msa0156240 AT1G26850.2 39.688 640 327 17 4 620 10 613 2.46e-146 437
Msa0156240 AT1G26850.1 39.688 640 327 17 4 620 10 613 2.46e-146 437
Msa0156240 AT4G00750.1 42.251 542 280 12 92 615 96 622 1.34e-143 431
Msa0156240 AT4G00740.1 38.742 604 327 13 21 615 24 593 4.07e-142 426
Msa0156240 AT4G00740.2 38.742 604 327 13 21 615 24 593 4.07e-142 426
Msa0156240 AT3G51070.2 45.386 531 251 15 32 545 319 827 7.69e-141 430
Msa0156240 AT1G31850.1 39.338 544 295 10 91 618 75 599 1.21e-140 422
Msa0156240 AT1G31850.2 39.338 544 295 10 91 618 75 599 1.21e-140 422
Msa0156240 AT1G31850.4 39.338 544 295 10 91 618 75 599 1.21e-140 422
Msa0156240 AT1G31850.3 39.338 544 295 10 91 618 75 599 1.21e-140 422
Msa0156240 AT2G43200.2 43.340 533 268 14 92 607 91 606 4.66e-138 416
Msa0156240 AT2G43200.1 43.340 533 268 14 92 607 91 606 4.66e-138 416
Msa0156240 AT2G40280.1 43.813 493 253 12 101 587 90 564 5.67e-137 412
Msa0156240 AT4G18030.1 40.255 549 289 12 86 617 79 605 9.94e-135 408
Msa0156240 AT3G56080.1 43.232 495 256 11 101 587 114 591 2.49e-134 406
Msa0156240 AT3G56080.2 44.812 453 226 10 101 545 114 550 4.67e-126 383
Msa0156240 AT4G19120.3 38.004 521 270 8 11 519 20 499 1.23e-120 367
Msa0156240 AT1G78240.1 34.944 538 308 11 90 598 144 668 1.79e-112 352
Msa0156240 AT1G78240.2 34.944 538 308 11 90 598 144 668 1.79e-112 352
Msa0156240 AT1G26850.3 39.181 513 264 13 4 497 10 493 1.74e-111 344
Msa0156240 AT1G13860.4 33.993 556 302 11 90 614 79 600 7.97e-108 338
Msa0156240 AT1G13860.3 33.993 556 302 11 90 614 79 600 7.97e-108 338
Msa0156240 AT1G13860.1 33.993 556 302 11 90 614 79 600 7.97e-108 338
Msa0156240 AT1G13860.5 33.993 556 302 11 90 614 79 600 7.97e-108 338
Msa0156240 AT1G19430.1 36.822 535 296 14 91 615 220 722 4.84e-105 334
Msa0156240 AT1G19430.3 36.822 535 296 14 91 615 220 722 4.84e-105 334
Msa0156240 AT2G03480.2 35.075 536 288 10 90 601 84 583 1.03e-103 327
Msa0156240 AT2G03480.1 34.637 537 300 11 90 601 84 594 1.10e-98 314
Msa0156240 AT1G13860.2 35.853 463 250 9 180 614 1 444 6.32e-95 299
Msa0156240 AT1G19430.2 34.414 401 228 12 91 481 220 595 1.44e-61 215
Msa0156240 AT2G03480.3 33.550 307 192 4 90 389 84 385 1.90e-55 194

Find 191 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATTCTGCCCTTCAATT+TGG 0.143921 1_4:+22068368 Msa0156240:three_prime_UTR
AAGACTCGGGGCATCGTATT+TGG 0.149605 1_4:+22063736 Msa0156240:CDS
GGCTGTGGTGTTGCAAGTTT+TGG 0.191581 1_4:+22065659 Msa0156240:CDS
ATCTGGTACATTTCACTATC+TGG 0.195699 1_4:+22062486 Msa0156240:five_prime_UTR
CTGCTCTGTGGCCACTTAAT+AGG 0.216185 1_4:-22064918 None:intergenic
ATTGTTAAATTTCCTTCTTT+TGG 0.255928 1_4:+22068266 Msa0156240:three_prime_UTR
TGCAGTTTGGGGAGTGAATA+TGG 0.280958 1_4:+22066141 Msa0156240:CDS
TGCTAGTTCACGTCGAGTTT+TGG 0.291926 1_4:+22063440 Msa0156240:five_prime_UTR
CTCTGTCGAATACAATTCTA+AGG 0.298104 1_4:-22067202 None:intergenic
CATCACATGGCCATTAGTTC+TGG 0.306050 1_4:+22068193 Msa0156240:three_prime_UTR
TTCACTCCCCAAACTGCATC+TGG 0.308256 1_4:-22066136 None:intergenic
TTGAGCTTGACCGTGTTCTT+AGG 0.311608 1_4:+22065894 Msa0156240:CDS
CGTTTAGTTGCTTCCGTTTG+TGG 0.312759 1_4:+22063614 Msa0156240:CDS
TCAAATATCTTACACACTTT+AGG 0.317158 1_4:+22063375 Msa0156240:five_prime_UTR
TAGTGAGCCACAATTTCTTC+TGG 0.318396 1_4:-22068048 None:intergenic
TGTATGTATATTATATTATA+AGG 0.323754 1_4:-22068542 None:intergenic
CTTCCCAATGCAATGCTGTT+AGG 0.326203 1_4:-22067961 None:intergenic
GAAGAGAGAGAAGTGAGATT+TGG 0.328080 1_4:-22062412 None:intergenic
TCGTCCTGAGCATATGCTTC+TGG 0.332248 1_4:-22065944 None:intergenic
AAGTTAAGTGTTTGTTTGTT+TGG 0.332479 1_4:-22062363 None:intergenic
GGTTCATCTACAGCTGAATA+TGG 0.335574 1_4:+22063701 Msa0156240:CDS
ATTATTCTGCCCTTCAATTT+GGG 0.336684 1_4:+22068369 Msa0156240:three_prime_UTR
CTCTTAAAGACAAAGATGTT+TGG 0.339388 1_4:+22067144 Msa0156240:CDS
TGCTCTGTGGCCACTTAATA+GGG 0.339999 1_4:-22064917 None:intergenic
AAATAATTTCATTGCCATCT+TGG 0.345100 1_4:-22068018 None:intergenic
TGAGAATTACTGGAATCTAA+TGG 0.345714 1_4:+22067049 Msa0156240:CDS
ATGAATGTTGTACCGCCTTA+TGG 0.347478 1_4:+22067170 Msa0156240:CDS
TGACGACCCAGATGCAGTTT+GGG 0.348581 1_4:+22066129 Msa0156240:CDS
ATGACGACCCAGATGCAGTT+TGG 0.353594 1_4:+22066128 Msa0156240:CDS
TGTGGTGTGGCACTCTTTCT+CGG 0.362412 1_4:+22063632 Msa0156240:CDS
CACATAGTAGATTGTCTTTG+TGG 0.366810 1_4:+22068419 Msa0156240:three_prime_UTR
CTTTCACAACCATCCAGTTC+TGG 0.370022 1_4:-22064998 None:intergenic
CAGGTTATTTATTAAGCCTT+AGG 0.374298 1_4:+22068323 Msa0156240:three_prime_UTR
AAGAGAAGTCCGACCAGAAC+TGG 0.375125 1_4:+22064985 Msa0156240:CDS
ATCCCTGATGATTATGAAAC+CGG 0.384290 1_4:-22067906 None:intergenic
CTCTTTGAAGCCAGTCAATT+CGG 0.384506 1_4:-22065856 None:intergenic
AGACTCGGGGCATCGTATTT+GGG 0.386174 1_4:+22063737 Msa0156240:CDS
CCTTAGGGATGCAGCAGAAT+AGG 0.386264 1_4:+22068078 Msa0156240:CDS
TCCTGCGTATCTTGGTGTCT+TGG 0.386642 1_4:+22065775 Msa0156240:CDS
ACGAAGAGGATTTGAGGATA+TGG 0.387587 1_4:+22065963 Msa0156240:CDS
CCTGCGTATCTTGGTGTCTT+GGG 0.389902 1_4:+22065776 Msa0156240:CDS
GTCATATGTTACAGGAACTT+TGG 0.392510 1_4:+22067015 Msa0156240:intron
ATCTTTGGTGGTCAAAATAG+TGG 0.394278 1_4:+22063680 Msa0156240:CDS
TCTTAAAGACAAAGATGTTT+GGG 0.394931 1_4:+22067145 Msa0156240:CDS
TTCGTTGTTAAGATTATTGT+CGG 0.396798 1_4:-22065609 None:intergenic
ATTCAATTTGCTTTAGAAAG+AGG 0.398168 1_4:+22065749 Msa0156240:CDS
TCTCACGAATGATTGCTATA+TGG 0.401558 1_4:+22066066 Msa0156240:CDS
GAGAATTACTGGAATCTAAT+GGG 0.401753 1_4:+22067050 Msa0156240:CDS
GTGTTCCAAGGATCCATCTT+TGG 0.406730 1_4:+22063665 Msa0156240:CDS
GAGTGTGAAGAAGGTATTAT+CGG 0.414320 1_4:-22062390 None:intergenic
AATTAGCTCCATGGCCTTCA+AGG 0.421988 1_4:+22066540 Msa0156240:CDS
GTTCTCGTTGCCGAATTGAC+TGG 0.424178 1_4:+22065846 Msa0156240:CDS
AATGGATATGAAAGCAAACC+TGG 0.425804 1_4:+22067106 Msa0156240:CDS
GTTTCTGCCAGATGACAGTT+TGG 0.429134 1_4:-22066042 None:intergenic
GTATTCGACAGAGGACTCAT+AGG 0.430881 1_4:+22067212 Msa0156240:CDS
GGCTCACTACTGAAAGCCTT+AGG 0.436251 1_4:+22068062 Msa0156240:CDS
ATTACTCGAGATGGACCGTT+TGG 0.438864 1_4:+22067874 Msa0156240:CDS
CTACCGGTTTCATAATCATC+AGG 0.443113 1_4:+22067903 Msa0156240:CDS
TGAGATTTGGAGTGTGAAGA+AGG 0.449553 1_4:-22062399 None:intergenic
TAACACTGTAAGGAACATAA+TGG 0.450668 1_4:+22067088 Msa0156240:CDS
CTATTAAGTGGCCACAGAGC+AGG 0.451293 1_4:+22064919 Msa0156240:CDS
ATCTTGGTCAGAGTCGGAAC+TGG 0.453662 1_4:-22068002 None:intergenic
AGAGGAATTCCTGCGTATCT+TGG 0.454477 1_4:+22065767 Msa0156240:CDS
TATACTGCTTCCAGAACTAA+TGG 0.458321 1_4:-22068203 None:intergenic
CATGGAGTAAATCATATGTC+CGG 0.459306 1_4:-22067799 None:intergenic
ACCTTGTATCCTGGTGGAGG+AGG 0.459530 1_4:-22064802 None:intergenic
GACCACCAAAGATGGATCCT+TGG 0.460777 1_4:-22063670 None:intergenic
AAATCTCATCTAACACTGTA+AGG 0.461019 1_4:+22067078 Msa0156240:CDS
AAAGAGTGCCACACCACAAA+CGG 0.461307 1_4:-22063627 None:intergenic
CATTCTTATGATCATAATGC+AGG 0.468042 1_4:+22068304 Msa0156240:three_prime_UTR
CTTAGGCCTAATGTTTCCAT+TGG 0.468494 1_4:+22068340 Msa0156240:three_prime_UTR
TCAAAAGATCTACTTGGGTA+AGG 0.468600 1_4:-22065812 None:intergenic
CTAAGGGTGCTTGGTCCATA+AGG 0.472195 1_4:-22067185 None:intergenic
ATATATTCTCTGCTGTTACA+AGG 0.473769 1_4:+22068161 Msa0156240:three_prime_UTR
TTCAAGTGAAGTCTTCGAAA+AGG 0.475992 1_4:+22066601 Msa0156240:CDS
TGAATCTTCGAGTTTAGTGC+AGG 0.480655 1_4:+22063793 Msa0156240:CDS
TTTACCTTGTATCCTGGTGG+AGG 0.483018 1_4:-22064805 None:intergenic
GGAGGACTGGTCAACCTTGA+AGG 0.484425 1_4:-22066554 None:intergenic
CAATTGTACCGCCTTTCTGC+AGG 0.485926 1_4:-22064772 None:intergenic
TTACATTATACCCAAATTGA+AGG 0.487165 1_4:-22068379 None:intergenic
TGAAAATGAGTCCCTCCTCC+AGG 0.489393 1_4:-22065038 None:intergenic
CCTATTCTGCTGCATCCCTA+AGG 0.490448 1_4:-22068078 None:intergenic
GAATATCCAATGGAAACATT+AGG 0.493543 1_4:-22068346 None:intergenic
AGAGAGACCAAACTGTCATC+TGG 0.495263 1_4:+22066035 Msa0156240:CDS
CTCAGGACGAAGAGGATTTG+AGG 0.497228 1_4:+22065957 Msa0156240:CDS
TCCTCCTCCACCAGGATACA+AGG 0.497281 1_4:+22064801 Msa0156240:CDS
CTTGACCGTGTTCTTAGGCC+GGG 0.497854 1_4:+22065899 Msa0156240:CDS
CACAGAGCAGGGAGGAGGTA+TGG 0.499092 1_4:+22064931 Msa0156240:CDS
ATGCCGAGGTCAGCTAATCT+AGG 0.500016 1_4:-22066578 None:intergenic
GCTAGTTCAAAAGATCTACT+TGG 0.501485 1_4:-22065818 None:intergenic
TGTTTCAGGTCCCTATTAAG+TGG 0.502421 1_4:+22064907 Msa0156240:intron
CAAAGAGGAGGACGAGTACC+AGG 0.502549 1_4:-22066097 None:intergenic
ATGTTGAAAGTAAGACAAAT+CGG 0.502644 1_4:-22063551 None:intergenic
GACCGTTTGGTTAGACCTAC+CGG 0.507939 1_4:+22067887 Msa0156240:CDS
CTGCGAACAGTTCTTGATGT+TGG 0.508746 1_4:+22065638 Msa0156240:CDS
ATGTCGAGGGGCAGATCTGA+TGG 0.509198 1_4:+22063578 Msa0156240:CDS
GCTTGACCGTGTTCTTAGGC+CGG 0.510074 1_4:+22065898 Msa0156240:CDS
CAATGGAAACATTAGGCCTA+AGG 0.511975 1_4:-22068339 None:intergenic
TGCTTGATTCCTCCTCCACC+AGG 0.512347 1_4:+22064793 Msa0156240:CDS
GCTCACTACTGAAAGCCTTA+GGG 0.514660 1_4:+22068063 Msa0156240:CDS
AGGTACTCACGGTCAGAGTA+AGG 0.515202 1_4:-22066178 None:intergenic
TGATATCATTGCAATGTCCT+TGG 0.516178 1_4:+22065700 Msa0156240:CDS
TCTGGTACATTTCACTATCT+GGG 0.516196 1_4:+22062487 Msa0156240:five_prime_UTR
GTACCTAACAGCATTGCATT+GGG 0.516671 1_4:+22067958 Msa0156240:CDS
AGTACCTAACAGCATTGCAT+TGG 0.517360 1_4:+22067957 Msa0156240:CDS
ATATCAAATGAGACTGAAGC+TGG 0.523265 1_4:+22064711 Msa0156240:CDS
ATCAGATGACAACAGAGCAC+AGG 0.526584 1_4:+22066511 Msa0156240:intron
AGAAGATCTATTACTCGAGA+TGG 0.528962 1_4:+22067865 Msa0156240:CDS
ATGAAATGAGAACCAAAAGA+AGG 0.530476 1_4:-22068278 None:intergenic
ATGGAGTAAATCATATGTCC+GGG 0.530878 1_4:-22067798 None:intergenic
AACCGGTAGGTCTAACCAAA+CGG 0.531027 1_4:-22067889 None:intergenic
GTGGCCACAGAGCAGGGAGG+AGG 0.539572 1_4:+22064926 Msa0156240:CDS
CTCTTGTCGGACGCATGTGT+TGG 0.541931 1_4:+22065999 Msa0156240:CDS
ACTTGGGTAAGGGAGTCTCT+TGG 0.542106 1_4:-22065801 None:intergenic
TTCCAAGGATCCATCTTTGG+TGG 0.542297 1_4:+22063668 Msa0156240:CDS
CAAAAGATCTACTTGGGTAA+GGG 0.547046 1_4:-22065811 None:intergenic
CTGGTCAACCTTGAAGGCCA+TGG 0.548055 1_4:-22066548 None:intergenic
GAAAATCGTTGAAAAGACTC+GGG 0.551925 1_4:+22063723 Msa0156240:CDS
TTCTTAACAAAATCAATCAC+AGG 0.552088 1_4:-22067935 None:intergenic
CATCTGGGTCGTCATCAGAC+TGG 0.554682 1_4:-22066120 None:intergenic
GGAAAATCGTTGAAAAGACT+CGG 0.556443 1_4:+22063722 Msa0156240:CDS
GAAGCTGGATCTTTCTGTGA+TGG 0.556823 1_4:+22064726 Msa0156240:CDS
TTTCAACATATAAATGTCGA+GGG 0.556989 1_4:+22063565 Msa0156240:exon
TGCTATATGGAAAGAGAACC+TGG 0.558054 1_4:+22066079 Msa0156240:CDS
GTCTCCAGAAGCATATGCTC+AGG 0.559721 1_4:+22065940 Msa0156240:CDS
TTGTTATCCAGAAGAAATTG+TGG 0.559819 1_4:+22068041 Msa0156240:CDS
AATACAATTCTAAGGGTGCT+TGG 0.560490 1_4:-22067194 None:intergenic
CTAGTTCAAAAGATCTACTT+GGG 0.560642 1_4:-22065817 None:intergenic
ATTGACTGGCTTCAAAGAGA+TGG 0.561865 1_4:+22065860 Msa0156240:CDS
AGCTAATCTAGGAGGAGGAC+TGG 0.562398 1_4:-22066567 None:intergenic
TATTAAGTGGCCACAGAGCA+GGG 0.564844 1_4:+22064920 Msa0156240:CDS
TACATTATACCCAAATTGAA+GGG 0.566049 1_4:-22068378 None:intergenic
AGAGAAATGAGTGCTCTTGT+CGG 0.566692 1_4:+22065986 Msa0156240:CDS
ACAGTTCTTGATGTTGGCTG+TGG 0.567360 1_4:+22065644 Msa0156240:CDS
GACATTGCCCTCCTGCAGAA+AGG 0.567595 1_4:+22064761 Msa0156240:CDS
ATTCAAATCGAAATATATTG+TGG 0.568168 1_4:+22063416 Msa0156240:five_prime_UTR
ATTGCCATCTTGGTCAGAGT+CGG 0.569503 1_4:-22068008 None:intergenic
CTTTCAACATATAAATGTCG+AGG 0.569755 1_4:+22063564 Msa0156240:exon
ATGCACATCATTAGGTGCCA+AGG 0.571766 1_4:-22065717 None:intergenic
GCAGAATAATGAATATCCAA+TGG 0.576552 1_4:-22068356 None:intergenic
AGTTGCTTCCGTTTGTGGTG+TGG 0.577218 1_4:+22063619 Msa0156240:CDS
CATATGATTTACTCCATGCA+TGG 0.578302 1_4:+22067804 Msa0156240:CDS
ATAATCTTAACAACGAAGGA+AGG 0.581153 1_4:+22065615 Msa0156240:CDS
TCACTCCCCAAACTGCATCT+GGG 0.584921 1_4:-22066135 None:intergenic
TAAGAACACGGTCAAGCTCA+AGG 0.587724 1_4:-22065892 None:intergenic
TCATAGGGACTACTCATGAC+TGG 0.590688 1_4:+22067228 Msa0156240:CDS
AACCTCCCGGCCTAAGAACA+CGG 0.591632 1_4:-22065904 None:intergenic
CACAACCATCCAGTTCTGGT+CGG 0.594717 1_4:-22064994 None:intergenic
CCTCCTAGATTAGCTGACCT+CGG 0.596239 1_4:+22066575 Msa0156240:CDS
GAAAATGAGTCCCTCCTCCA+GGG 0.596929 1_4:-22065037 None:intergenic
TTGTACCGCCTTTCTGCAGG+AGG 0.598133 1_4:-22064769 None:intergenic
ATATAGCAATCATTCGTGAG+AGG 0.609703 1_4:-22066064 None:intergenic
AGGTCAGCTAATCTAGGAGG+AGG 0.611600 1_4:-22066572 None:intergenic
TATTCGACAGAGGACTCATA+GGG 0.614481 1_4:+22067213 Msa0156240:CDS
GAGTAAGCAAAATAACCTCC+CGG 0.617833 1_4:-22065917 None:intergenic
GACAATAATCTTAACAACGA+AGG 0.621640 1_4:+22065611 Msa0156240:CDS
TTTAGTGCAGGGAGATACGT+TGG 0.622149 1_4:+22063805 Msa0156240:CDS
AGGAGAAAATCACAACTACA+TGG 0.624728 1_4:+22068098 Msa0156240:exon
GAAGTCCGACCAGAACTGGA+TGG 0.636178 1_4:+22064989 Msa0156240:CDS
CATACCTCCTCCCTGCTCTG+TGG 0.637487 1_4:-22064930 None:intergenic
GACGACCCAGATGCAGTTTG+GGG 0.638692 1_4:+22066130 Msa0156240:CDS
CTGATGATTATGAAACCGGT+AGG 0.638945 1_4:-22067902 None:intergenic
AGCATATGCTCAGGACGAAG+AGG 0.639173 1_4:+22065949 Msa0156240:CDS
AGTTCCGACTCTGACCAAGA+TGG 0.640355 1_4:+22068004 Msa0156240:CDS
CTTAGAATTGTATTCGACAG+AGG 0.641862 1_4:+22067203 Msa0156240:CDS
TCATCAGACTGGCAAAGAGG+AGG 0.642219 1_4:-22066109 None:intergenic
AGACTTCACTTGAAATGCCG+AGG 0.643353 1_4:-22066592 None:intergenic
CCCAAGACACCAAGATACGC+AGG 0.643355 1_4:-22065776 None:intergenic
GAGCAGCTGCAAATGAACCC+AGG 0.647677 1_4:-22067124 None:intergenic
TCAGATGACAACAGAGCACA+GGG 0.647827 1_4:+22066512 Msa0156240:intron
TGTACCGCCTTTCTGCAGGA+GGG 0.650346 1_4:-22064768 None:intergenic
AGGGTAGTGAATTAGCTCCA+TGG 0.651252 1_4:+22066531 Msa0156240:CDS
TGGAGTAAATCATATGTCCG+GGG 0.651729 1_4:-22067797 None:intergenic
GAATCTTCGAGTTTAGTGCA+GGG 0.654895 1_4:+22063794 Msa0156240:CDS
ACGGAATCAACTCTGAGTGA+CGG 0.659026 1_4:-22064669 None:intergenic
TCGTCATCAGACTGGCAAAG+AGG 0.659055 1_4:-22066112 None:intergenic
CCGAGGTCAGCTAATCTAGG+AGG 0.660326 1_4:-22066575 None:intergenic
TCTGTCGAATACAATTCTAA+GGG 0.660348 1_4:-22067201 None:intergenic
CAGAACTGGATGGTTGTGAA+AGG 0.663525 1_4:+22064999 Msa0156240:CDS
TACCGGTTTCATAATCATCA+GGG 0.665236 1_4:+22067904 Msa0156240:CDS
ATGGATATGAAAGCAAACCT+GGG 0.666984 1_4:+22067107 Msa0156240:CDS
ATAAGATGTCTGTCTAAACA+CGG 0.670365 1_4:-22064688 None:intergenic
AGGGTGCTTGGTCCATAAGG+CGG 0.675746 1_4:-22067182 None:intergenic
GACCGTGTTCTTAGGCCGGG+AGG 0.680320 1_4:+22065902 Msa0156240:CDS
TGAAGTCTTCGAAAAGGACA+CGG 0.691182 1_4:+22066607 Msa0156240:CDS
GGAGTAAATCATATGTCCGG+GGG 0.694268 1_4:-22067796 None:intergenic
ATTGCCCTCCTGCAGAAAGG+CGG 0.694643 1_4:+22064764 Msa0156240:CDS
TTCAACATATAAATGTCGAG+GGG 0.701953 1_4:+22063566 Msa0156240:exon
AAGGAATTAACAGCATCACA+TGG 0.703586 1_4:+22068180 Msa0156240:three_prime_UTR
AAAATCGTTGAAAAGACTCG+GGG 0.714150 1_4:+22063724 Msa0156240:CDS
TAAGTGGCCACAGAGCAGGG+AGG 0.775323 1_4:+22064923 Msa0156240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTACATTTAATTATG+TGG + chr1_4:22062684-22062703 Msa0156240:intron 10.0%
!! TAACTAAATAATATAAAACA+AGG - chr1_4:22067366-22067385 None:intergenic 10.0%
!! TGTATGTATATTATATTATA+AGG - chr1_4:22068545-22068564 None:intergenic 10.0%
!!! AAATTTTGTATCATTTTCAT+TGG + chr1_4:22062748-22062767 Msa0156240:intron 15.0%
!!! TTTAAGTTGGTTTTTATATT+TGG + chr1_4:22063062-22063081 Msa0156240:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr1_4:22064263-22064282 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr1_4:22064262-22064281 Msa0156240:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr1_4:22064286-22064305 Msa0156240:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + chr1_4:22064389-22064408 Msa0156240:intron 15.0%
!! TTAATTATGCAATTAAGAAT+CGG - chr1_4:22064497-22064516 None:intergenic 15.0%
!!! TTTTTATTATGTTGTTTCTT+TGG + chr1_4:22064884-22064903 Msa0156240:intron 15.0%
!! AAATAAAAAATCATGAGAAA+AGG - chr1_4:22066201-22066220 None:intergenic 15.0%
!! CAAAAAAAACATGAAAATGA+AGG - chr1_4:22062551-22062570 None:intergenic 20.0%
!!! TTACTGTCATTATTATTTTG+TGG + chr1_4:22062831-22062850 Msa0156240:intron 20.0%
!!! ATTGAGTTTTGAATTTTCAT+TGG + chr1_4:22062854-22062873 Msa0156240:intron 20.0%
!!! TTTGTTAACAAGTTTTAAGT+TGG + chr1_4:22063049-22063068 Msa0156240:intron 20.0%
!!! GCATAAATTTTATGAATTGT+CGG + chr1_4:22063113-22063132 Msa0156240:intron 20.0%
!! TCAAAACGACAAAATATTAA+AGG + chr1_4:22063281-22063300 Msa0156240:intron 20.0%
!! ATTCAAATCGAAATATATTG+TGG + chr1_4:22063416-22063435 Msa0156240:five_prime_UTR 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr1_4:22064229-22064248 Msa0156240:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr1_4:22064272-22064291 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr1_4:22064349-22064368 Msa0156240:intron 20.0%
!! TTAATATTAACATCTACTCT+CGG - chr1_4:22064838-22064857 None:intergenic 20.0%
!! TAATAAAAATGCTATTCGAT+AGG - chr1_4:22064873-22064892 None:intergenic 20.0%
!! ATTCTAATGTTGTTAAATAG+CGG + chr1_4:22065232-22065251 Msa0156240:intron 20.0%
!! TTACATATACTTCAATTTCA+TGG + chr1_4:22065531-22065550 Msa0156240:intron 20.0%
!! ATATAATATATAACACACCA+TGG - chr1_4:22066327-22066346 None:intergenic 20.0%
!! TTTCAAATAGTAACCATTAA+AGG - chr1_4:22066389-22066408 None:intergenic 20.0%
!! AAAAAAGAATTGAGAATTAC+TGG + chr1_4:22067039-22067058 Msa0156240:CDS 20.0%
!! TTGAATTGTAATGTGATAAT+TGG + chr1_4:22067693-22067712 Msa0156240:intron 20.0%
!!! ATTGTTAAATTTCCTTCTTT+TGG + chr1_4:22068266-22068285 Msa0156240:three_prime_UTR 20.0%
! TTTGAGAAATGATGAAAAAG+AGG - chr1_4:22062328-22062347 None:intergenic 25.0%
! AAGTTAAGTGTTTGTTTGTT+TGG - chr1_4:22062366-22062385 None:intergenic 25.0%
!!! TTTCTATCTTTTTTTCGATC+TGG + chr1_4:22062469-22062488 Msa0156240:five_prime_UTR 25.0%
!!! GTGATTCTAACTTGTTTTAT+TGG + chr1_4:22062602-22062621 Msa0156240:intron 25.0%
! TTTATTGGATGCTAATAATG+TGG + chr1_4:22062617-22062636 Msa0156240:intron 25.0%
! ATTATCATTGTGTTAGATCT+TGG + chr1_4:22062650-22062669 Msa0156240:intron 25.0%
! ATTCAATCCAATGAAAATGA+TGG - chr1_4:22062782-22062801 None:intergenic 25.0%
!! ATGAATGTCAATTTTCTTGA+TGG + chr1_4:22062800-22062819 Msa0156240:intron 25.0%
!! AATGTTACTTAAAGATCTGA+TGG + chr1_4:22063216-22063235 Msa0156240:intron 25.0%
! TCAAATATCTTACACACTTT+AGG + chr1_4:22063375-22063394 Msa0156240:five_prime_UTR 25.0%
! ATGTTGAAAGTAAGACAAAT+CGG - chr1_4:22063554-22063573 None:intergenic 25.0%
! TTTCAACATATAAATGTCGA+GGG + chr1_4:22063565-22063584 Msa0156240:exon 25.0%
! TATGCTTGAACAAAAACTTA+CGG - chr1_4:22063858-22063877 None:intergenic 25.0%
!! ATTTTTGCTAATGCTATTCA+GGG - chr1_4:22064003-22064022 None:intergenic 25.0%
!! AATTTTTGCTAATGCTATTC+AGG - chr1_4:22064004-22064023 None:intergenic 25.0%
!! TCTAAGTTTGTCTTTACTTT+TGG + chr1_4:22064589-22064608 Msa0156240:intron 25.0%
!!! GAAATACTTTCTGTTTTTGA+AGG + chr1_4:22064636-22064655 Msa0156240:intron 25.0%
! TTGTCAAATAGCATCTATAA+CGG + chr1_4:22065321-22065340 Msa0156240:intron 25.0%
!!! TACATTCATACTTTTTACTC+CGG + chr1_4:22065452-22065471 Msa0156240:intron 25.0%
! TTCGTTGTTAAGATTATTGT+CGG - chr1_4:22065612-22065631 None:intergenic 25.0%
!!! ATTCAATTTGCTTTAGAAAG+AGG + chr1_4:22065749-22065768 Msa0156240:CDS 25.0%
!!! CATCTGATAAAAAAGTGTTT+AGG - chr1_4:22066499-22066518 None:intergenic 25.0%
! CTAATTCAAACAGTAACAAA+AGG - chr1_4:22066654-22066673 None:intergenic 25.0%
!! CTTTTGTTACTGTTTGAATT+AGG + chr1_4:22066652-22066671 Msa0156240:intron 25.0%
! AAACGACAATATAAAAGGAA+TGG - chr1_4:22066705-22066724 None:intergenic 25.0%
!! ATTCCTTTTATATTGTCGTT+TGG + chr1_4:22066704-22066723 Msa0156240:intron 25.0%
! ACAAAGTTTATTCATTTCCT+TGG - chr1_4:22066747-22066766 None:intergenic 25.0%
! ATGAGATAATGAATAGTTGA+GGG - chr1_4:22066807-22066826 None:intergenic 25.0%
! AATGAGATAATGAATAGTTG+AGG - chr1_4:22066808-22066827 None:intergenic 25.0%
! TTTGAAAACGAGAAATAAAC+AGG + chr1_4:22066903-22066922 Msa0156240:intron 25.0%
!! TAACTTTTGTCATATGTTAC+AGG + chr1_4:22067007-22067026 Msa0156240:intron 25.0%
! TCTTAAAGACAAAGATGTTT+GGG + chr1_4:22067145-22067164 Msa0156240:CDS 25.0%
!! AAATGCAATAAGTTAGTTTC+AGG - chr1_4:22067270-22067289 None:intergenic 25.0%
!! GAAATAGTATTTTCGTAACA+TGG + chr1_4:22067390-22067409 Msa0156240:intron 25.0%
! AGGAATCAAACTCAAAAATT+CGG - chr1_4:22067447-22067466 None:intergenic 25.0%
!!! ACATTAAGTTTTTTTCGAAC+AGG - chr1_4:22067499-22067518 None:intergenic 25.0%
! TCAAAGATCCTAATTAGTTA+TGG + chr1_4:22067601-22067620 Msa0156240:intron 25.0%
! TTCTTAACAAAATCAATCAC+AGG - chr1_4:22067938-22067957 None:intergenic 25.0%
! AAATAATTTCATTGCCATCT+TGG - chr1_4:22068021-22068040 None:intergenic 25.0%
! TACATTATACCCAAATTGAA+GGG - chr1_4:22068381-22068400 None:intergenic 25.0%
! TTACATTATACCCAAATTGA+AGG - chr1_4:22068382-22068401 None:intergenic 25.0%
!! TACATGAATTTTATTCTGCT+TGG + chr1_4:22068480-22068499 Msa0156240:three_prime_UTR 25.0%
!! ATACATACATTTCTTTTGCT+TGG + chr1_4:22068556-22068575 Msa0156240:three_prime_UTR 25.0%
! CTGTTTCATTTTCTTTGTGT+CGG + chr1_4:22062511-22062530 Msa0156240:five_prime_UTR 30.0%
! TCCAATTCCATCATTTTCAT+TGG + chr1_4:22062772-22062791 Msa0156240:intron 30.0%
! TCCAATGAAAATGATGGAAT+TGG - chr1_4:22062776-22062795 None:intergenic 30.0%
!! TGTCAATTTTCTTGATGGTT+TGG + chr1_4:22062805-22062824 Msa0156240:intron 30.0%
GGATTGATGTAAATTGTACT+TGG + chr1_4:22062928-22062947 Msa0156240:intron 30.0%
AAAAGTTAACCTGCAAACAA+GGG - chr1_4:22063344-22063363 None:intergenic 30.0%
CTTTCAACATATAAATGTCG+AGG + chr1_4:22063564-22063583 Msa0156240:exon 30.0%
TTCAACATATAAATGTCGAG+GGG + chr1_4:22063566-22063585 Msa0156240:exon 30.0%
ATGCTTGAACAAAAACTTAC+GGG - chr1_4:22063857-22063876 None:intergenic 30.0%
! GACTTTTTGCTACAATTGTT+TGG - chr1_4:22063920-22063939 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr1_4:22064180-22064199 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr1_4:22064181-22064200 Msa0156240:intron 30.0%
!!! TGTCTTTACTTTTGGAACAT+TGG + chr1_4:22064597-22064616 Msa0156240:intron 30.0%
ATAAGATGTCTGTCTAAACA+CGG - chr1_4:22064691-22064710 None:intergenic 30.0%
! ATATCTTTTACCTTGTATCC+TGG - chr1_4:22064814-22064833 None:intergenic 30.0%
AATAGTGCATCACATAACAA+TGG - chr1_4:22065289-22065308 None:intergenic 30.0%
TGTTATGTGATGCACTATTT+AGG + chr1_4:22065290-22065309 Msa0156240:intron 30.0%
CATCCATAAAATGAATGAAC+CGG - chr1_4:22065417-22065436 None:intergenic 30.0%
!! TACTTTTTACTCCGGTTAAT+AGG + chr1_4:22065460-22065479 Msa0156240:intron 30.0%
TTACTGAAAAGCCTATTAAC+CGG - chr1_4:22065474-22065493 None:intergenic 30.0%
! TAATAGGCTTTTCAGTAACA+TGG + chr1_4:22065476-22065495 Msa0156240:intron 30.0%
AGCAAATCAAACTAACTATG+AGG - chr1_4:22065568-22065587 None:intergenic 30.0%
GACAATAATCTTAACAACGA+AGG + chr1_4:22065611-22065630 Msa0156240:CDS 30.0%
ATAATCTTAACAACGAAGGA+AGG + chr1_4:22065615-22065634 Msa0156240:CDS 30.0%
!! TGATTTTGATGCACATCATT+AGG - chr1_4:22065728-22065747 None:intergenic 30.0%
CTAGTTCAAAAGATCTACTT+GGG - chr1_4:22065820-22065839 None:intergenic 30.0%
TAGTAAGAAAGAAAACTCGA+AGG - chr1_4:22066233-22066252 None:intergenic 30.0%
AGTTAGTAGTAGCTCAAAAT+AGG - chr1_4:22066363-22066382 None:intergenic 30.0%
ACTACTAACTGAACCTTTAA+TGG + chr1_4:22066373-22066392 Msa0156240:intron 30.0%
CTTCCAAACGACAATATAAA+AGG - chr1_4:22066710-22066729 None:intergenic 30.0%
!! CTTTTATATTGTCGTTTGGA+AGG + chr1_4:22066708-22066727 Msa0156240:intron 30.0%
TGTCTGCGATAAATAGTTAA+GGG + chr1_4:22066842-22066861 Msa0156240:intron 30.0%
CTACGAAACGAAAGTTATAA+AGG + chr1_4:22066938-22066957 Msa0156240:intron 30.0%
CGAAAGTTATAAAGGATAGA+TGG + chr1_4:22066946-22066965 Msa0156240:intron 30.0%
TGAGAATTACTGGAATCTAA+TGG + chr1_4:22067049-22067068 Msa0156240:CDS 30.0%
GAGAATTACTGGAATCTAAT+GGG + chr1_4:22067050-22067069 Msa0156240:CDS 30.0%
! ACAGTGTTAGATGAGATTTT+TGG - chr1_4:22067077-22067096 None:intergenic 30.0%
AAATCTCATCTAACACTGTA+AGG + chr1_4:22067078-22067097 Msa0156240:CDS 30.0%
TAACACTGTAAGGAACATAA+TGG + chr1_4:22067088-22067107 Msa0156240:CDS 30.0%
CTCTTAAAGACAAAGATGTT+TGG + chr1_4:22067144-22067163 Msa0156240:CDS 30.0%
TCTGTCGAATACAATTCTAA+GGG - chr1_4:22067204-22067223 None:intergenic 30.0%
! TATTTTCGTAACATGGTGTT+GGG + chr1_4:22067397-22067416 Msa0156240:intron 30.0%
ATCAAACTCAAAAATTCGGT+AGG - chr1_4:22067443-22067462 None:intergenic 30.0%
!!! AAGTTTTTTTCGAACAGGAT+CGG - chr1_4:22067494-22067513 None:intergenic 30.0%
AAGATCCTAATTAGTTATGG+TGG + chr1_4:22067604-22067623 Msa0156240:intron 30.0%
GTAAACCACCATAACTAATT+AGG - chr1_4:22067612-22067631 None:intergenic 30.0%
CCAACAAAAGGATAAACAAA+AGG - chr1_4:22067648-22067667 None:intergenic 30.0%
!! CCTTTTGTTTATCCTTTTGT+TGG + chr1_4:22067645-22067664 Msa0156240:intron 30.0%
! ATTCAAATTTTGTAGCTACG+AGG - chr1_4:22067679-22067698 None:intergenic 30.0%
CATGGAGAATATATTTGAAC+AGG + chr1_4:22067753-22067772 Msa0156240:intron 30.0%
TTGTTATCCAGAAGAAATTG+TGG + chr1_4:22068041-22068060 Msa0156240:CDS 30.0%
ATATATTCTCTGCTGTTACA+AGG + chr1_4:22068161-22068180 Msa0156240:three_prime_UTR 30.0%
ATGAAATGAGAACCAAAAGA+AGG - chr1_4:22068281-22068300 None:intergenic 30.0%
CATTCTTATGATCATAATGC+AGG + chr1_4:22068304-22068323 Msa0156240:three_prime_UTR 30.0%
CAGGTTATTTATTAAGCCTT+AGG + chr1_4:22068323-22068342 Msa0156240:three_prime_UTR 30.0%
GAATATCCAATGGAAACATT+AGG - chr1_4:22068349-22068368 None:intergenic 30.0%
GCAGAATAATGAATATCCAA+TGG - chr1_4:22068359-22068378 None:intergenic 30.0%
ATTATTCTGCCCTTCAATTT+GGG + chr1_4:22068369-22068388 Msa0156240:three_prime_UTR 30.0%
!! GAGTGTGAAGAAGGTATTAT+CGG - chr1_4:22062393-22062412 None:intergenic 35.0%
ATCTGGTACATTTCACTATC+TGG + chr1_4:22062486-22062505 Msa0156240:five_prime_UTR 35.0%
TCTGGTACATTTCACTATCT+GGG + chr1_4:22062487-22062506 Msa0156240:five_prime_UTR 35.0%
TTAGTGACTCTAGTAGTTCT+AGG + chr1_4:22062907-22062926 Msa0156240:intron 35.0%
AAAGTTAACCTGCAAACAAG+GGG - chr1_4:22063343-22063362 None:intergenic 35.0%
CAAAAGTTAACCTGCAAACA+AGG - chr1_4:22063345-22063364 None:intergenic 35.0%
! GGTTTTCTATATGTGTTCCA+AGG + chr1_4:22063653-22063672 Msa0156240:CDS 35.0%
!!! ACTATTTTGACCACCAAAGA+TGG - chr1_4:22063681-22063700 None:intergenic 35.0%
! ATCTTTGGTGGTCAAAATAG+TGG + chr1_4:22063680-22063699 Msa0156240:CDS 35.0%
GGAAAATCGTTGAAAAGACT+CGG + chr1_4:22063722-22063741 Msa0156240:CDS 35.0%
GAAAATCGTTGAAAAGACTC+GGG + chr1_4:22063723-22063742 Msa0156240:CDS 35.0%
AAAATCGTTGAAAAGACTCG+GGG + chr1_4:22063724-22063743 Msa0156240:CDS 35.0%
! AAACTTACGGGGAAACTTTT+CGG - chr1_4:22063845-22063864 None:intergenic 35.0%
TGCTTGAACAAAAACTTACG+GGG - chr1_4:22063856-22063875 None:intergenic 35.0%
! TTTGCTACAATTGTTTGGTG+TGG - chr1_4:22063915-22063934 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr1_4:22064311-22064330 Msa0156240:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr1_4:22064315-22064334 Msa0156240:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr1_4:22064415-22064434 Msa0156240:intron 35.0%
TTGGAACATTGGCAATCTAA+TGG + chr1_4:22064608-22064627 Msa0156240:intron 35.0%
ATATCAAATGAGACTGAAGC+TGG + chr1_4:22064711-22064730 Msa0156240:CDS 35.0%
!! TGTTGTTTCTTTGGTGTTTC+AGG + chr1_4:22064893-22064912 Msa0156240:intron 35.0%
! GGTGAAAAGATATTTTTCCC+TGG + chr1_4:22065020-22065039 Msa0156240:CDS 35.0%
! GAAAAGATATTTTTCCCTGG+AGG + chr1_4:22065023-22065042 Msa0156240:CDS 35.0%
ACGGATCACAGAAAAAATAG+TGG - chr1_4:22065383-22065402 None:intergenic 35.0%
!!! ACACCGGTTCATTCATTTTA+TGG + chr1_4:22065411-22065430 Msa0156240:intron 35.0%
! CGGTTCATTCATTTTATGGA+TGG + chr1_4:22065415-22065434 Msa0156240:intron 35.0%
AGTAACATGGTAGACAATGT+AGG + chr1_4:22065489-22065508 Msa0156240:intron 35.0%
TCAAACTAACTATGAGGCAT+TGG - chr1_4:22065562-22065581 None:intergenic 35.0%
TGATATCATTGCAATGTCCT+TGG + chr1_4:22065700-22065719 Msa0156240:CDS 35.0%
CAAAAGATCTACTTGGGTAA+GGG - chr1_4:22065814-22065833 None:intergenic 35.0%
TCAAAAGATCTACTTGGGTA+AGG - chr1_4:22065815-22065834 None:intergenic 35.0%
GCTAGTTCAAAAGATCTACT+TGG - chr1_4:22065821-22065840 None:intergenic 35.0%
ATATAGCAATCATTCGTGAG+AGG - chr1_4:22066067-22066086 None:intergenic 35.0%
TCTCACGAATGATTGCTATA+TGG + chr1_4:22066066-22066085 Msa0156240:CDS 35.0%
!! ATCATGAGAAAAGGTACTCA+CGG - chr1_4:22066192-22066211 None:intergenic 35.0%
TGTTGTCAAAATAGTAGCCA+TGG + chr1_4:22066307-22066326 Msa0156240:intron 35.0%
TTCAAGTGAAGTCTTCGAAA+AGG + chr1_4:22066601-22066620 Msa0156240:CDS 35.0%
CGACAATATAAAAGGAATGG+AGG - chr1_4:22066702-22066721 None:intergenic 35.0%
AAGGTTATTTACACACACCA+AGG + chr1_4:22066727-22066746 Msa0156240:intron 35.0%
CTGTCTGCGATAAATAGTTA+AGG + chr1_4:22066841-22066860 Msa0156240:intron 35.0%
GTCATATGTTACAGGAACTT+TGG + chr1_4:22067015-22067034 Msa0156240:intron 35.0%
AATGGATATGAAAGCAAACC+TGG + chr1_4:22067106-22067125 Msa0156240:CDS 35.0%
ATGGATATGAAAGCAAACCT+GGG + chr1_4:22067107-22067126 Msa0156240:CDS 35.0%
!! AATACAATTCTAAGGGTGCT+TGG - chr1_4:22067197-22067216 None:intergenic 35.0%
CTCTGTCGAATACAATTCTA+AGG - chr1_4:22067205-22067224 None:intergenic 35.0%
CTTAGAATTGTATTCGACAG+AGG + chr1_4:22067203-22067222 Msa0156240:CDS 35.0%
! GTATTTTCGTAACATGGTGT+TGG + chr1_4:22067396-22067415 Msa0156240:intron 35.0%
ATTCCTATAGTCGCCTATTT+GGG + chr1_4:22067461-22067480 Msa0156240:intron 35.0%
!!! AGTTTTTTTCGAACAGGATC+GGG - chr1_4:22067493-22067512 None:intergenic 35.0%
! CTAATCCTCGAGTTTAAAGT+GGG - chr1_4:22067522-22067541 None:intergenic 35.0%
ACTAATCCTCGAGTTTAAAG+TGG - chr1_4:22067523-22067542 None:intergenic 35.0%
!! TCGAGGATTAGTTCCATAAT+GGG + chr1_4:22067531-22067550 Msa0156240:intron 35.0%
ATGGTGGTTTACTTCAATGT+TGG + chr1_4:22067620-22067639 Msa0156240:intron 35.0%
ATGGAGTAAATCATATGTCC+GGG - chr1_4:22067801-22067820 None:intergenic 35.0%
CATGGAGTAAATCATATGTC+CGG - chr1_4:22067802-22067821 None:intergenic 35.0%
CATATGATTTACTCCATGCA+TGG + chr1_4:22067804-22067823 Msa0156240:CDS 35.0%
TGCTTGTACGTCAGAAAAAA+CGG - chr1_4:22067831-22067850 None:intergenic 35.0%
AGAAGATCTATTACTCGAGA+TGG + chr1_4:22067865-22067884 Msa0156240:CDS 35.0%
!! TACCGGTTTCATAATCATCA+GGG + chr1_4:22067904-22067923 Msa0156240:CDS 35.0%
ATCCCTGATGATTATGAAAC+CGG - chr1_4:22067909-22067928 None:intergenic 35.0%
AGGAGAAAATCACAACTACA+TGG + chr1_4:22068098-22068117 Msa0156240:exon 35.0%
AAGGAATTAACAGCATCACA+TGG + chr1_4:22068180-22068199 Msa0156240:three_prime_UTR 35.0%
TATACTGCTTCCAGAACTAA+TGG - chr1_4:22068206-22068225 None:intergenic 35.0%
CATTATTCTGCCCTTCAATT+TGG + chr1_4:22068368-22068387 Msa0156240:three_prime_UTR 35.0%
CACATAGTAGATTGTCTTTG+TGG + chr1_4:22068419-22068438 Msa0156240:three_prime_UTR 35.0%
GTCTTTGTGGTGAAAAAGTT+AGG + chr1_4:22068432-22068451 Msa0156240:three_prime_UTR 35.0%
! TGAGATTTGGAGTGTGAAGA+AGG - chr1_4:22062402-22062421 None:intergenic 40.0%
GAAGAGAGAGAAGTGAGATT+TGG - chr1_4:22062415-22062434 None:intergenic 40.0%
!!! CGAGTTTTGGATGGTGAATT+TGG + chr1_4:22063453-22063472 Msa0156240:five_prime_UTR 40.0%
GGTTCATCTACAGCTGAATA+TGG + chr1_4:22063701-22063720 Msa0156240:CDS 40.0%
! TGAATCTTCGAGTTTAGTGC+AGG + chr1_4:22063793-22063812 Msa0156240:CDS 40.0%
! GAATCTTCGAGTTTAGTGCA+GGG + chr1_4:22063794-22063813 Msa0156240:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr1_4:22064419-22064438 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr1_4:22064314-22064333 Msa0156240:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr1_4:22064419-22064438 Msa0156240:intron 40.0%
! TCTTTTACCTTGTATCCTGG+TGG - chr1_4:22064811-22064830 None:intergenic 40.0%
! TGTTTCAGGTCCCTATTAAG+TGG + chr1_4:22064907-22064926 Msa0156240:intron 40.0%
! TCTTTTGCAAGGTGAGTATG+TGG - chr1_4:22064969-22064988 None:intergenic 40.0%
! AAGATATTTTTCCCTGGAGG+AGG + chr1_4:22065026-22065045 Msa0156240:CDS 40.0%
! AGATATTTTTCCCTGGAGGA+GGG + chr1_4:22065027-22065046 Msa0156240:CDS 40.0%
TTGCAGCAATCGCAAATGTA+AGG + chr1_4:22065081-22065100 Msa0156240:intron 40.0%
! ACTATAGCACTGTTGCTTAG+CGG + chr1_4:22065345-22065364 Msa0156240:intron 40.0%
!! CTCTTTGAAGCCAGTCAATT+CGG - chr1_4:22065859-22065878 None:intergenic 40.0%
!! ATTGACTGGCTTCAAAGAGA+TGG + chr1_4:22065860-22065879 Msa0156240:CDS 40.0%
GAGTAAGCAAAATAACCTCC+CGG - chr1_4:22065920-22065939 None:intergenic 40.0%
ACGAAGAGGATTTGAGGATA+TGG + chr1_4:22065963-22065982 Msa0156240:CDS 40.0%
AGAGAAATGAGTGCTCTTGT+CGG + chr1_4:22065986-22066005 Msa0156240:CDS 40.0%
TGCTATATGGAAAGAGAACC+TGG + chr1_4:22066079-22066098 Msa0156240:CDS 40.0%
! GAAAGAAAACTCGAAGGCAT+AGG - chr1_4:22066227-22066246 None:intergenic 40.0%
TGAAGTCTTCGAAAAGGACA+CGG + chr1_4:22066607-22066626 Msa0156240:CDS 40.0%
ATGAATGTTGTACCGCCTTA+TGG + chr1_4:22067170-22067189 Msa0156240:CDS 40.0%
TATTCGACAGAGGACTCATA+GGG + chr1_4:22067213-22067232 Msa0156240:CDS 40.0%
ACTCCACAGCTAGAGTAAAA+GGG - chr1_4:22067324-22067343 None:intergenic 40.0%
AACTCCACAGCTAGAGTAAA+AGG - chr1_4:22067325-22067344 None:intergenic 40.0%
GATTCCTATAGTCGCCTATT+TGG + chr1_4:22067460-22067479 Msa0156240:intron 40.0%
AATGTCCCACTTTAAACTCG+AGG + chr1_4:22067514-22067533 Msa0156240:intron 40.0%
!! CTCGAGGATTAGTTCCATAA+TGG + chr1_4:22067530-22067549 Msa0156240:intron 40.0%
! CAAATTTTGTAGCTACGAGG+AGG - chr1_4:22067676-22067695 None:intergenic 40.0%
! AAGCATTTTCAACATACCCC+CGG + chr1_4:22067780-22067799 Msa0156240:CDS 40.0%
TGGAGTAAATCATATGTCCG+GGG - chr1_4:22067800-22067819 None:intergenic 40.0%
CTGATGATTATGAAACCGGT+AGG - chr1_4:22067905-22067924 None:intergenic 40.0%
!! CTACCGGTTTCATAATCATC+AGG + chr1_4:22067903-22067922 Msa0156240:CDS 40.0%
AGTACCTAACAGCATTGCAT+TGG + chr1_4:22067957-22067976 Msa0156240:CDS 40.0%
GTACCTAACAGCATTGCATT+GGG + chr1_4:22067958-22067977 Msa0156240:CDS 40.0%
TAGTGAGCCACAATTTCTTC+TGG - chr1_4:22068051-22068070 None:intergenic 40.0%
CAATGGAAACATTAGGCCTA+AGG - chr1_4:22068342-22068361 None:intergenic 40.0%
CTTAGGCCTAATGTTTCCAT+TGG + chr1_4:22068340-22068359 Msa0156240:three_prime_UTR 40.0%
GCGTAGCAAAGCTTGATCAA+AGG - chr1_4:22063004-22063023 None:intergenic 45.0%
! TGCTAGTTCACGTCGAGTTT+TGG + chr1_4:22063440-22063459 Msa0156240:five_prime_UTR 45.0%
!!! AGTTCACGTCGAGTTTTGGA+TGG + chr1_4:22063444-22063463 Msa0156240:five_prime_UTR 45.0%
CGTTTAGTTGCTTCCGTTTG+TGG + chr1_4:22063614-22063633 Msa0156240:CDS 45.0%
!! AAAGAGTGCCACACCACAAA+CGG - chr1_4:22063630-22063649 None:intergenic 45.0%
GTGTTCCAAGGATCCATCTT+TGG + chr1_4:22063665-22063684 Msa0156240:CDS 45.0%
TTCCAAGGATCCATCTTTGG+TGG + chr1_4:22063668-22063687 Msa0156240:CDS 45.0%
TTTAGTGCAGGGAGATACGT+TGG + chr1_4:22063805-22063824 Msa0156240:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr1_4:22064418-22064437 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr1_4:22064418-22064437 Msa0156240:intron 45.0%
ACGGAATCAACTCTGAGTGA+CGG - chr1_4:22064672-22064691 None:intergenic 45.0%
GAAGCTGGATCTTTCTGTGA+TGG + chr1_4:22064726-22064745 Msa0156240:CDS 45.0%
TTTACCTTGTATCCTGGTGG+AGG - chr1_4:22064808-22064827 None:intergenic 45.0%
TGCTCTGTGGCCACTTAATA+GGG - chr1_4:22064920-22064939 None:intergenic 45.0%
TATTAAGTGGCCACAGAGCA+GGG + chr1_4:22064920-22064939 Msa0156240:CDS 45.0%
CTTTCACAACCATCCAGTTC+TGG - chr1_4:22065001-22065020 None:intergenic 45.0%
CAGAACTGGATGGTTGTGAA+AGG + chr1_4:22064999-22065018 Msa0156240:CDS 45.0%
! GGAGGGACTCATTTTCACTA+CGG + chr1_4:22065044-22065063 Msa0156240:CDS 45.0%
TGATCCGTGATTGACAACAC+CGG + chr1_4:22065395-22065414 Msa0156240:intron 45.0%
!! TGAACCGGTGTTGTCAATCA+CGG - chr1_4:22065402-22065421 None:intergenic 45.0%
TGTCGGAAAAGTTGAGCATC+TGG - chr1_4:22065595-22065614 None:intergenic 45.0%
CTGCGAACAGTTCTTGATGT+TGG + chr1_4:22065638-22065657 Msa0156240:CDS 45.0%
! ACAGTTCTTGATGTTGGCTG+TGG + chr1_4:22065644-22065663 Msa0156240:CDS 45.0%
!!! GCTGTGGTGTTGCAAGTTTT+GGG + chr1_4:22065660-22065679 Msa0156240:CDS 45.0%
!!! CTGTGGTGTTGCAAGTTTTG+GGG + chr1_4:22065661-22065680 Msa0156240:CDS 45.0%
!!! AAGTTTTGGGGCGTATCTTC+TGG + chr1_4:22065673-22065692 Msa0156240:CDS 45.0%
ATGCACATCATTAGGTGCCA+AGG - chr1_4:22065720-22065739 None:intergenic 45.0%
AGAGGAATTCCTGCGTATCT+TGG + chr1_4:22065767-22065786 Msa0156240:CDS 45.0%
TAAGAACACGGTCAAGCTCA+AGG - chr1_4:22065895-22065914 None:intergenic 45.0%
TTGAGCTTGACCGTGTTCTT+AGG + chr1_4:22065894-22065913 Msa0156240:CDS 45.0%
AGAGAGACCAAACTGTCATC+TGG + chr1_4:22066035-22066054 Msa0156240:CDS 45.0%
GTTTCTGCCAGATGACAGTT+TGG - chr1_4:22066045-22066064 None:intergenic 45.0%
TGCAGTTTGGGGAGTGAATA+TGG + chr1_4:22066141-22066160 Msa0156240:CDS 45.0%
ATCAGATGACAACAGAGCAC+AGG + chr1_4:22066511-22066530 Msa0156240:intron 45.0%
TCAGATGACAACAGAGCACA+GGG + chr1_4:22066512-22066531 Msa0156240:intron 45.0%
AGGGTAGTGAATTAGCTCCA+TGG + chr1_4:22066531-22066550 Msa0156240:CDS 45.0%
AATTAGCTCCATGGCCTTCA+AGG + chr1_4:22066540-22066559 Msa0156240:CDS 45.0%
AGACTTCACTTGAAATGCCG+AGG - chr1_4:22066595-22066614 None:intergenic 45.0%
TTCGAAAAGGACACGGTAAC+TGG + chr1_4:22066614-22066633 Msa0156240:intron 45.0%
GTATTCGACAGAGGACTCAT+AGG + chr1_4:22067212-22067231 Msa0156240:CDS 45.0%
TCATAGGGACTACTCATGAC+TGG + chr1_4:22067228-22067247 Msa0156240:CDS 45.0%
! TCACCCTTTTACTCTAGCTG+TGG + chr1_4:22067318-22067337 Msa0156240:intron 45.0%
GAGTTCCACGTTGTGCATAA+GGG + chr1_4:22067340-22067359 Msa0156240:intron 45.0%
! TAACATGGTGTTGGGAGAGT+TGG + chr1_4:22067405-22067424 Msa0156240:intron 45.0%
!! TAGTTCCATAATGGGCCCAA+AGG + chr1_4:22067539-22067558 Msa0156240:intron 45.0%
!! AGTTCCATAATGGGCCCAAA+GGG + chr1_4:22067540-22067559 Msa0156240:intron 45.0%
ATAAGCCTTGGGGATACCTT+GGG + chr1_4:22067564-22067583 Msa0156240:intron 45.0%
GAGGAGGAACTACCAACAAA+AGG - chr1_4:22067660-22067679 None:intergenic 45.0%
GGTTACACTGATACTCGAGA+TGG + chr1_4:22067714-22067733 Msa0156240:intron 45.0%
TCTCCATGCGTCAGAAAAGA+TGG - chr1_4:22067741-22067760 None:intergenic 45.0%
GGAGTAAATCATATGTCCGG+GGG - chr1_4:22067799-22067818 None:intergenic 45.0%
CAGAAAAAACGGTCCATGCA+TGG - chr1_4:22067820-22067839 None:intergenic 45.0%
ATTACTCGAGATGGACCGTT+TGG + chr1_4:22067874-22067893 Msa0156240:CDS 45.0%
AACCGGTAGGTCTAACCAAA+CGG - chr1_4:22067892-22067911 None:intergenic 45.0%
CTTCCCAATGCAATGCTGTT+AGG - chr1_4:22067964-22067983 None:intergenic 45.0%
ATTGCCATCTTGGTCAGAGT+CGG - chr1_4:22068011-22068030 None:intergenic 45.0%
GCTCACTACTGAAAGCCTTA+GGG + chr1_4:22068063-22068082 Msa0156240:CDS 45.0%
CATCACATGGCCATTAGTTC+TGG + chr1_4:22068193-22068212 Msa0156240:three_prime_UTR 45.0%
! ACTACTGTCCCCTTGTTTGC+AGG + chr1_4:22063332-22063351 Msa0156240:intron 50.0%
AGTTGCTTCCGTTTGTGGTG+TGG + chr1_4:22063619-22063638 Msa0156240:CDS 50.0%
TGTGGTGTGGCACTCTTTCT+CGG + chr1_4:22063632-22063651 Msa0156240:CDS 50.0%
GACCACCAAAGATGGATCCT+TGG - chr1_4:22063673-22063692 None:intergenic 50.0%
!! AAGACTCGGGGCATCGTATT+TGG + chr1_4:22063736-22063755 Msa0156240:CDS 50.0%
!! AGACTCGGGGCATCGTATTT+GGG + chr1_4:22063737-22063756 Msa0156240:CDS 50.0%
! AATCACAACCGTGTCGATGC+TGG - chr1_4:22064564-22064583 None:intergenic 50.0%
CAATTGTACCGCCTTTCTGC+AGG - chr1_4:22064775-22064794 None:intergenic 50.0%
CTGCTCTGTGGCCACTTAAT+AGG - chr1_4:22064921-22064940 None:intergenic 50.0%
CTATTAAGTGGCCACAGAGC+AGG + chr1_4:22064919-22064938 Msa0156240:CDS 50.0%
! GGTCGGACTTCTCTTTTGCA+AGG - chr1_4:22064980-22064999 None:intergenic 50.0%
AAGAGAAGTCCGACCAGAAC+TGG + chr1_4:22064985-22065004 Msa0156240:CDS 50.0%
! CACAACCATCCAGTTCTGGT+CGG - chr1_4:22064997-22065016 None:intergenic 50.0%
GAAAATGAGTCCCTCCTCCA+GGG - chr1_4:22065040-22065059 None:intergenic 50.0%
TGAAAATGAGTCCCTCCTCC+AGG - chr1_4:22065041-22065060 None:intergenic 50.0%
ACTGCTGCAATGCAAAGCAG+CGG + chr1_4:22065114-22065133 Msa0156240:intron 50.0%
!!! GGCTGTGGTGTTGCAAGTTT+TGG + chr1_4:22065659-22065678 Msa0156240:CDS 50.0%
!! TCCTGCGTATCTTGGTGTCT+TGG + chr1_4:22065775-22065794 Msa0156240:CDS 50.0%
!! CCTGCGTATCTTGGTGTCTT+GGG + chr1_4:22065776-22065795 Msa0156240:CDS 50.0%
ACTTGGGTAAGGGAGTCTCT+TGG - chr1_4:22065804-22065823 None:intergenic 50.0%
GTTCTCGTTGCCGAATTGAC+TGG + chr1_4:22065846-22065865 Msa0156240:CDS 50.0%
! GTCTCCAGAAGCATATGCTC+AGG + chr1_4:22065940-22065959 Msa0156240:CDS 50.0%
TCGTCCTGAGCATATGCTTC+TGG - chr1_4:22065947-22065966 None:intergenic 50.0%
AGCATATGCTCAGGACGAAG+AGG + chr1_4:22065949-22065968 Msa0156240:CDS 50.0%
CTCAGGACGAAGAGGATTTG+AGG + chr1_4:22065957-22065976 Msa0156240:CDS 50.0%
TCATCAGACTGGCAAAGAGG+AGG - chr1_4:22066112-22066131 None:intergenic 50.0%
TCGTCATCAGACTGGCAAAG+AGG - chr1_4:22066115-22066134 None:intergenic 50.0%
ATGACGACCCAGATGCAGTT+TGG + chr1_4:22066128-22066147 Msa0156240:CDS 50.0%
TGACGACCCAGATGCAGTTT+GGG + chr1_4:22066129-22066148 Msa0156240:CDS 50.0%
TCACTCCCCAAACTGCATCT+GGG - chr1_4:22066138-22066157 None:intergenic 50.0%
TTCACTCCCCAAACTGCATC+TGG - chr1_4:22066139-22066158 None:intergenic 50.0%
AGGTACTCACGGTCAGAGTA+AGG - chr1_4:22066181-22066200 None:intergenic 50.0%
AGCTAATCTAGGAGGAGGAC+TGG - chr1_4:22066570-22066589 None:intergenic 50.0%
AGGTCAGCTAATCTAGGAGG+AGG - chr1_4:22066575-22066594 None:intergenic 50.0%
! CCTCCTAGATTAGCTGACCT+CGG + chr1_4:22066575-22066594 Msa0156240:CDS 50.0%
ATGCCGAGGTCAGCTAATCT+AGG - chr1_4:22066581-22066600 None:intergenic 50.0%
!! CTAAGGGTGCTTGGTCCATA+AGG - chr1_4:22067188-22067207 None:intergenic 50.0%
GGAGTTCCACGTTGTGCATA+AGG + chr1_4:22067339-22067358 Msa0156240:intron 50.0%
CCTCCCAAATAGGCGACTAT+AGG - chr1_4:22067467-22067486 None:intergenic 50.0%
CCTATAGTCGCCTATTTGGG+AGG + chr1_4:22067464-22067483 Msa0156240:intron 50.0%
TATGCCCTTTGGGCCCATTA+TGG - chr1_4:22067547-22067566 None:intergenic 50.0%
CATAAGCCTTGGGGATACCT+TGG + chr1_4:22067563-22067582 Msa0156240:intron 50.0%
TAAGCCTTGGGGATACCTTG+GGG + chr1_4:22067565-22067584 Msa0156240:intron 50.0%
! GGACCATCTTTTCTGACGCA+TGG + chr1_4:22067735-22067754 Msa0156240:intron 50.0%
GACCGTTTGGTTAGACCTAC+CGG + chr1_4:22067887-22067906 Msa0156240:CDS 50.0%
ATCTTGGTCAGAGTCGGAAC+TGG - chr1_4:22068005-22068024 None:intergenic 50.0%
AGTTCCGACTCTGACCAAGA+TGG + chr1_4:22068004-22068023 Msa0156240:CDS 50.0%
GGCTCACTACTGAAAGCCTT+AGG + chr1_4:22068062-22068081 Msa0156240:CDS 50.0%
CCTATTCTGCTGCATCCCTA+AGG - chr1_4:22068081-22068100 None:intergenic 50.0%
CCTTAGGGATGCAGCAGAAT+AGG + chr1_4:22068078-22068097 Msa0156240:CDS 50.0%
ATGTCGAGGGGCAGATCTGA+TGG + chr1_4:22063578-22063597 Msa0156240:CDS 55.0%
!! CAGCATTGCCAGCATCGACA+CGG + chr1_4:22064553-22064572 Msa0156240:intron 55.0%
GACATTGCCCTCCTGCAGAA+AGG + chr1_4:22064761-22064780 Msa0156240:CDS 55.0%
ATTGCCCTCCTGCAGAAAGG+CGG + chr1_4:22064764-22064783 Msa0156240:CDS 55.0%
TGTACCGCCTTTCTGCAGGA+GGG - chr1_4:22064771-22064790 None:intergenic 55.0%
TTGTACCGCCTTTCTGCAGG+AGG - chr1_4:22064772-22064791 None:intergenic 55.0%
TGCTTGATTCCTCCTCCACC+AGG + chr1_4:22064793-22064812 Msa0156240:CDS 55.0%
TCCTCCTCCACCAGGATACA+AGG + chr1_4:22064801-22064820 Msa0156240:CDS 55.0%
ACCTTGTATCCTGGTGGAGG+AGG - chr1_4:22064805-22064824 None:intergenic 55.0%
GAAGTCCGACCAGAACTGGA+TGG + chr1_4:22064989-22065008 Msa0156240:CDS 55.0%
CCCAAGACACCAAGATACGC+AGG - chr1_4:22065779-22065798 None:intergenic 55.0%
GCTTGACCGTGTTCTTAGGC+CGG + chr1_4:22065898-22065917 Msa0156240:CDS 55.0%
CTTGACCGTGTTCTTAGGCC+GGG + chr1_4:22065899-22065918 Msa0156240:CDS 55.0%
AACCTCCCGGCCTAAGAACA+CGG - chr1_4:22065907-22065926 None:intergenic 55.0%
CTCTTGTCGGACGCATGTGT+TGG + chr1_4:22065999-22066018 Msa0156240:CDS 55.0%
CAAAGAGGAGGACGAGTACC+AGG - chr1_4:22066100-22066119 None:intergenic 55.0%
CATCTGGGTCGTCATCAGAC+TGG - chr1_4:22066123-22066142 None:intergenic 55.0%
GACGACCCAGATGCAGTTTG+GGG + chr1_4:22066130-22066149 Msa0156240:CDS 55.0%
CTGGTCAACCTTGAAGGCCA+TGG - chr1_4:22066551-22066570 None:intergenic 55.0%
!! GGAGGACTGGTCAACCTTGA+AGG - chr1_4:22066557-22066576 None:intergenic 55.0%
CCGAGGTCAGCTAATCTAGG+AGG - chr1_4:22066578-22066597 None:intergenic 55.0%
GAGCAGCTGCAAATGAACCC+AGG - chr1_4:22067127-22067146 None:intergenic 55.0%
! AGGGTGCTTGGTCCATAAGG+CGG - chr1_4:22067185-22067204 None:intergenic 55.0%
CAAGGCCCTTATGCACAACG+TGG - chr1_4:22067348-22067367 None:intergenic 55.0%
! GCCCAAAGGGCATAAGCCTT+GGG + chr1_4:22067553-22067572 Msa0156240:intron 55.0%
CCCCAAGGCTTATGCCCTTT+GGG - chr1_4:22067557-22067576 None:intergenic 55.0%
! CCCAAAGGGCATAAGCCTTG+GGG + chr1_4:22067554-22067573 Msa0156240:intron 55.0%
TCCCCAAGGCTTATGCCCTT+TGG - chr1_4:22067558-22067577 None:intergenic 55.0%
TAAGTGGCCACAGAGCAGGG+AGG + chr1_4:22064923-22064942 Msa0156240:CDS 60.0%
CATACCTCCTCCCTGCTCTG+TGG - chr1_4:22064933-22064952 None:intergenic 60.0%
CACAGAGCAGGGAGGAGGTA+TGG + chr1_4:22064931-22064950 Msa0156240:CDS 60.0%
GATCGGGCTGCCTCCCAAAT+AGG - chr1_4:22067477-22067496 None:intergenic 60.0%
! GGCCCAAAGGGCATAAGCCT+TGG + chr1_4:22067552-22067571 Msa0156240:intron 60.0%
GATACCTTGGGGCGCGTAGT+GGG + chr1_4:22067576-22067595 Msa0156240:intron 60.0%
ATACCTTGGGGCGCGTAGTG+GGG + chr1_4:22067577-22067596 Msa0156240:intron 60.0%
GACCGTGTTCTTAGGCCGGG+AGG + chr1_4:22065902-22065921 Msa0156240:CDS 65.0%
GGATACCTTGGGGCGCGTAG+TGG + chr1_4:22067575-22067594 Msa0156240:intron 65.0%
TACCTTGGGGCGCGTAGTGG+GGG + chr1_4:22067578-22067597 Msa0156240:intron 65.0%
GTGGCCACAGAGCAGGGAGG+AGG + chr1_4:22064926-22064945 Msa0156240:CDS 70.0%
! CGCGCCCCAAGGTATCCCCA+AGG - chr1_4:22067572-22067591 None:intergenic 70.0%
GACCCCCACTACGCGCCCCA+AGG - chr1_4:22067583-22067602 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 22062300 22068579 22062300 ID=Msa0156240;Name=Msa0156240
chr1_4 mRNA 22062300 22068579 22062300 ID=Msa0156240-mRNA-1;Parent=Msa0156240;Name=Msa0156240-mRNA-1;_AED=0.10;_eAED=0.10;_QI=457|1|1|1|0.85|0.75|8|480|626
chr1_4 exon 22062300 22062532 22062300 ID=Msa0156240-mRNA-1:exon:7927;Parent=Msa0156240-mRNA-1
chr1_4 exon 22063354 22063856 22063354 ID=Msa0156240-mRNA-1:exon:7928;Parent=Msa0156240-mRNA-1
chr1_4 exon 22064658 22064822 22064658 ID=Msa0156240-mRNA-1:exon:7929;Parent=Msa0156240-mRNA-1
chr1_4 exon 22064915 22065097 22064915 ID=Msa0156240-mRNA-1:exon:7930;Parent=Msa0156240-mRNA-1
chr1_4 exon 22065596 22066190 22065596 ID=Msa0156240-mRNA-1:exon:7931;Parent=Msa0156240-mRNA-1
chr1_4 exon 22066516 22066628 22066516 ID=Msa0156240-mRNA-1:exon:7932;Parent=Msa0156240-mRNA-1
chr1_4 exon 22067029 22067249 22067029 ID=Msa0156240-mRNA-1:exon:7933;Parent=Msa0156240-mRNA-1
chr1_4 exon 22067775 22068579 22067775 ID=Msa0156240-mRNA-1:exon:7934;Parent=Msa0156240-mRNA-1
chr1_4 five_prime_UTR 22062300 22062532 22062300 ID=Msa0156240-mRNA-1:five_prime_utr;Parent=Msa0156240-mRNA-1
chr1_4 five_prime_UTR 22063354 22063577 22063354 ID=Msa0156240-mRNA-1:five_prime_utr;Parent=Msa0156240-mRNA-1
chr1_4 CDS 22063578 22063856 22063578 ID=Msa0156240-mRNA-1:cds;Parent=Msa0156240-mRNA-1
chr1_4 CDS 22064658 22064822 22064658 ID=Msa0156240-mRNA-1:cds;Parent=Msa0156240-mRNA-1
chr1_4 CDS 22064915 22065097 22064915 ID=Msa0156240-mRNA-1:cds;Parent=Msa0156240-mRNA-1
chr1_4 CDS 22065596 22066190 22065596 ID=Msa0156240-mRNA-1:cds;Parent=Msa0156240-mRNA-1
chr1_4 CDS 22066516 22066628 22066516 ID=Msa0156240-mRNA-1:cds;Parent=Msa0156240-mRNA-1
chr1_4 CDS 22067029 22067249 22067029 ID=Msa0156240-mRNA-1:cds;Parent=Msa0156240-mRNA-1
chr1_4 CDS 22067775 22068099 22067775 ID=Msa0156240-mRNA-1:cds;Parent=Msa0156240-mRNA-1
chr1_4 three_prime_UTR 22068100 22068579 22068100 ID=Msa0156240-mRNA-1:three_prime_utr;Parent=Msa0156240-mRNA-1
Gene Sequence

>Msa0156240

ATGTCGAGGGGCAGATCTGATGGATCGCAAAAGAAGCGTTTAGTTGCTTCCGTTTGTGGTGTGGCACTCTTTCTCGGTTTTCTATATGTGTTCCAAGGATCCATCTTTGGTGGTCAAAATAGTGGTTCATCTACAGCTGAATATGGAAAATCGTTGAAAAGACTCGGGGCATCGTATTTGGGTGCAGATGATGATGCAGATAACAAGCAACAAGATGAATCTTCGAGTTTAGTGCAGGGAGATACGTTGGCTGATGATATTGTACCGAAAAGTTTCCCCGTTTGTGATGACCGTCACTCAGAGTTGATTCCGTGTTTAGACAGACATCTTATATATCAAATGAGACTGAAGCTGGATCTTTCTGTGATGGAACACTACGAGAGACATTGCCCTCCTGCAGAAAGGCGGTACAATTGCTTGATTCCTCCTCCACCAGGATACAAGGTCCCTATTAAGTGGCCACAGAGCAGGGAGGAGGTATGGAAAGTAAATATACCACATACTCACCTTGCAAAAGAGAAGTCCGACCAGAACTGGATGGTTGTGAAAGGTGAAAAGATATTTTTCCCTGGAGGAGGGACTCATTTTCACTACGGAGCTGATAAGTACATTGCAGCAATCGCAAATATGCTCAACTTTTCCGACAATAATCTTAACAACGAAGGAAGGCTGCGAACAGTTCTTGATGTTGGCTGTGGTGTTGCAAGTTTTGGGGCGTATCTTCTGGCATCTGATATCATTGCAATGTCCTTGGCACCTAATGATGTGCATCAAAATCAAATTCAATTTGCTTTAGAAAGAGGAATTCCTGCGTATCTTGGTGTCTTGGGAACCAAGAGACTCCCTTACCCAAGTAGATCTTTTGAACTAGCACATTGTTCTCGTTGCCGAATTGACTGGCTTCAAAGAGATGGAATACTACTCCTTGAGCTTGACCGTGTTCTTAGGCCGGGAGGTTATTTTGCTTACTCGTCTCCAGAAGCATATGCTCAGGACGAAGAGGATTTGAGGATATGGAGAGAAATGAGTGCTCTTGTCGGACGCATGTGTTGGAGAATTGCTTCAAAGAGAGACCAAACTGTCATCTGGCAGAAACCTCTCACGAATGATTGCTATATGGAAAGAGAACCTGGTACTCGTCCTCCTCTTTGCCAGTCTGATGACGACCCAGATGCAGTTTGGGGAGTGAATATGGAAACTTGCATAACACCTTACTCTGACCATGACAACAGAGCACAGGGTAGTGAATTAGCTCCATGGCCTTCAAGGTTGACCAGTCCTCCTCCTAGATTAGCTGACCTCGGCATTTCAAGTGAAGTCTTCGAAAAGGACACGGAACTTTGGCAAAAAAGAATTGAGAATTACTGGAATCTAATGGGTCCAAAAATCTCATCTAACACTGTAAGGAACATAATGGATATGAAAGCAAACCTGGGTTCATTTGCAGCTGCTCTTAAAGACAAAGATGTTTGGGTGATGAATGTTGTACCGCCTTATGGACCAAGCACCCTTAGAATTGTATTCGACAGAGGACTCATAGGGACTACTCATGACTGGTGTGAAGCATTTTCAACATACCCCCGGACATATGATTTACTCCATGCATGGACCGTTTTTTCTGACGTACAAGCAAAAGAGTGCAGTCAAGAAGATCTATTACTCGAGATGGACCGTTTGGTTAGACCTACCGGTTTCATAATCATCAGGGATAAACAACCTGTGATTGATTTTGTTAAGAAGTACCTAACAGCATTGCATTGGGAAGAAGTTGCAACTGCAGATTCCAGTTCCGACTCTGACCAAGATGGCAATGAAATTATTTTTGTTATCCAGAAGAAATTGTGGCTCACTACTGAAAGCCTTAGGGATGCAGCAGAATAG
Protein sequence

>Msa0156240

MSRGRSDGSQKKRLVASVCGVALFLGFLYVFQGSIFGGQNSGSSTAEYGKSLKRLGASYLGADDDADNKQQDESSSLVQGDTLADDIVPKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLSVMEHYERHCPPAERRYNCLIPPPPGYKVPIKWPQSREEVWKVNIPHTHLAKEKSDQNWMVVKGEKIFFPGGGTHFHYGADKYIAAIANMLNFSDNNLNNEGRLRTVLDVGCGVASFGAYLLASDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVGRMCWRIASKRDQTVIWQKPLTNDCYMEREPGTRPPLCQSDDDPDAVWGVNMETCITPYSDHDNRAQGSELAPWPSRLTSPPPRLADLGISSEVFEKDTELWQKRIENYWNLMGPKISSNTVRNIMDMKANLGSFAAALKDKDVWVMNVVPPYGPSTLRIVFDRGLIGTTHDWCEAFSTYPRTYDLLHAWTVFSDVQAKECSQEDLLLEMDRLVRPTGFIIIRDKQPVIDFVKKYLTALHWEEVATADSSSDSDQDGNEIIFVIQKKLWLTTESLRDAAE*