Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455400 | XP_003602305.1 | 99.346 | 459 | 3 | 0 | 1 | 459 | 1 | 459 | 0.0 | 930 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455400 | sp|Q6N075|MFSD5_HUMAN | 35.294 | 459 | 270 | 11 | 6 | 456 | 6 | 445 | 5.42e-73 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455400 | G7J858 | 99.346 | 459 | 3 | 0 | 1 | 459 | 1 | 459 | 0.0 | 930 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0079280 | Msa1455400 | 0.807416 | 5.108110e-50 | -8.615850e-47 |
| Msa1383820 | Msa1455400 | 0.815614 | 8.446047e-52 | -8.615850e-47 |
| Msa1396410 | Msa1455400 | 0.801779 | 7.664429e-49 | -8.615850e-47 |
| Msa1404680 | Msa1455400 | 0.992592 | 3.175526e-194 | -8.615850e-47 |
| Msa1446670 | Msa1455400 | 0.806851 | 6.729695e-50 | -8.615850e-47 |
| Msa1450520 | Msa1455400 | 0.830146 | 3.461255e-55 | -8.615850e-47 |
| Msa0748740 | Msa1455400 | 0.823073 | 1.685668e-53 | -8.615850e-47 |
| Msa0799450 | Msa1455400 | 0.808313 | 3.293263e-50 | -8.615850e-47 |
| Msa0837710 | Msa1455400 | 0.808948 | 2.409527e-50 | -8.615850e-47 |
| Msa0156240 | Msa1455400 | 0.814136 | 1.796790e-51 | -8.615850e-47 |
| Msa0198210 | Msa1455400 | 0.814755 | 1.310575e-51 | -8.615850e-47 |
| Msa0207680 | Msa1455400 | 0.823485 | 1.350787e-53 | -8.615850e-47 |
| Msa1257720 | Msa1455400 | 0.837400 | 5.314643e-57 | -8.615850e-47 |
| Msa1257780 | Msa1455400 | 0.855911 | 4.592017e-62 | -8.615850e-47 |
| Msa0380980 | Msa1455400 | 0.828075 | 1.099523e-54 | -8.615850e-47 |
| Msa0383660 | Msa1455400 | 0.817006 | 4.124521e-52 | -8.615850e-47 |
| Msa0385310 | Msa1455400 | 0.810238 | 1.273310e-50 | -8.615850e-47 |
| Msa0425310 | Msa1455400 | 0.904425 | 1.244714e-79 | -8.615850e-47 |
| Msa0427420 | Msa1455400 | 0.819540 | 1.100837e-52 | -8.615850e-47 |
| Msa0427480 | Msa1455400 | 0.818932 | 1.514439e-52 | -8.615850e-47 |
| Msa0427760 | Msa1455400 | 0.844418 | 7.654073e-59 | -8.615850e-47 |
| Msa0427950 | Msa1455400 | 0.842965 | 1.873697e-58 | -8.615850e-47 |
| Msa0447440 | Msa1455400 | 0.810285 | 1.243404e-50 | -8.615850e-47 |
| Msa1101120 | Msa1455400 | 0.801120 | 1.045780e-48 | -8.615850e-47 |
| Msa0287640 | Msa1455400 | 0.833379 | 5.517118e-56 | -8.615850e-47 |
| Msa1207840 | Msa1455400 | 0.837241 | 5.837052e-57 | -8.615850e-47 |
| Msa1215930 | Msa1455400 | 0.823944 | 1.054424e-53 | -8.615850e-47 |
| Msa0521890 | Msa1455400 | 0.834048 | 3.754928e-56 | -8.615850e-47 |
| Msa0523110 | Msa1455400 | 0.824540 | 7.637439e-54 | -8.615850e-47 |
| Msa0558720 | Msa1455400 | 0.814165 | 1.769730e-51 | -8.615850e-47 |
| Msa0930770 | Msa1455400 | 0.819594 | 1.069953e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455400 | MtrunA17_Chr3g0127341 | 99.346 | 459 | 3 | 0 | 1 | 459 | 1 | 459 | 0.0 | 930 |
| Msa1455400 | MtrunA17_Chr5g0401471 | 27.078 | 373 | 240 | 7 | 32 | 397 | 47 | 394 | 1.59e-32 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455400 | AT4G27720.1 | 85.000 | 460 | 68 | 1 | 1 | 459 | 1 | 460 | 0.0 | 818 |
| Msa1455400 | AT3G49310.1 | 81.739 | 460 | 83 | 1 | 1 | 459 | 1 | 460 | 0.0 | 793 |
| Msa1455400 | AT1G64650.1 | 81.345 | 461 | 83 | 2 | 1 | 458 | 1 | 461 | 0.0 | 790 |
| Msa1455400 | AT1G64650.2 | 81.068 | 412 | 75 | 2 | 50 | 458 | 9 | 420 | 0.0 | 704 |
| Msa1455400 | AT2G23093.1 | 25.517 | 435 | 273 | 13 | 30 | 446 | 46 | 447 | 4.06e-21 | 95.9 |
| Msa1455400 | AT2G23093.2 | 25.250 | 400 | 248 | 13 | 65 | 446 | 14 | 380 | 3.74e-19 | 89.4 |
Find 136 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCGCAGCACCCCTAAAT+TGG | 0.113644 | tig0035778:+18139 | None:intergenic |
| CGCCGGGTGCATTCAGCTTT+TGG | 0.118395 | tig0035778:-17421 | Msa1455400:CDS |
| CTTACTTATGTCAATTCTTT+TGG | 0.125118 | tig0035778:-15999 | Msa1455400:three_prime_UTR |
| CAACTCTTCATTGCTGGATT+TGG | 0.156725 | tig0035778:-19729 | Msa1455400:CDS |
| TACAAAATTAAGACAATTAA+AGG | 0.164320 | tig0035778:+15933 | None:intergenic |
| ACAGAGAAATGTTGTAAAAT+TGG | 0.205061 | tig0035778:+20721 | None:intergenic |
| TTCTCGAAGGCTATATTTCT+TGG | 0.216269 | tig0035778:-18342 | Msa1455400:CDS |
| AGAGCTTGCTTGCCCAATTT+AGG | 0.224575 | tig0035778:-18152 | Msa1455400:CDS |
| ATCTGTAATTGATTAAGTTT+TGG | 0.229731 | tig0035778:-16260 | Msa1455400:exon |
| TTGAGGAGAAATCTCCATTT+TGG | 0.255910 | tig0035778:-16030 | Msa1455400:three_prime_UTR |
| AACTCTTCATTGCTGGATTT+GGG | 0.263781 | tig0035778:-19728 | Msa1455400:CDS |
| CTTGATGTTGGGCCGTATCT+TGG | 0.280247 | tig0035778:-19486 | Msa1455400:CDS |
| AAAGTTGTGTTGGCATATTC+TGG | 0.280683 | tig0035778:-17383 | Msa1455400:CDS |
| TCCAAACAGCCCAGAAAATA+TGG | 0.295391 | tig0035778:+18305 | None:intergenic |
| GAGCTTGCTTGCCCAATTTA+GGG | 0.300525 | tig0035778:-18151 | Msa1455400:CDS |
| TTCCCTATCACTGTTATGTT+TGG | 0.303539 | tig0035778:-16908 | Msa1455400:CDS |
| GCTGCGGTGGCCATTGCTTC+TGG | 0.308302 | tig0035778:-18126 | Msa1455400:intron |
| AGTAAGAACTACTACCAAAA+TGG | 0.322831 | tig0035778:+16016 | None:intergenic |
| GTGAAGGAGTTCAAGCTAAA+AGG | 0.325343 | tig0035778:-16132 | Msa1455400:three_prime_UTR |
| CTATACAGTACGTATGGATA+TGG | 0.330750 | tig0035778:-19768 | Msa1455400:CDS |
| CCACCACCTGTTGCTTTAGT+AGG | 0.348043 | tig0035778:+17453 | None:intergenic |
| TCTCTGTTAACTCGCGATAA+TGG | 0.351173 | tig0035778:-20705 | Msa1455400:exon |
| TTTGGGTCTTCGATGTTATT+CGG | 0.354101 | tig0035778:-19711 | Msa1455400:CDS |
| ATGCCAAACATAACAGTGAT+AGG | 0.360971 | tig0035778:+16905 | None:intergenic |
| CTTGTTGATACATTGGCTCT+TGG | 0.361460 | tig0035778:-18276 | Msa1455400:CDS |
| ATCGGACAACTCTTCATTGC+TGG | 0.362820 | tig0035778:-19735 | Msa1455400:CDS |
| AACTCCTTCACTTGGTTGGT+GGG | 0.364271 | tig0035778:+16144 | None:intergenic |
| AAGGCTATATTTCTTGGAAA+TGG | 0.366820 | tig0035778:-18336 | Msa1455400:CDS |
| CTCGCTTGCATCTAAGTTGA+TGG | 0.381655 | tig0035778:-17673 | Msa1455400:CDS |
| TTGAGATCTCATCTTCATAA+TGG | 0.384178 | tig0035778:+17356 | None:intergenic |
| TTCTCCTCAAGTAAAATAAT+AGG | 0.387414 | tig0035778:+16043 | None:intergenic |
| GGATCTAAGTTTGTCTCGTT+GGG | 0.396886 | tig0035778:-15970 | Msa1455400:three_prime_UTR |
| CTCATTTATTCTCTCATGAT+GGG | 0.397970 | tig0035778:-20557 | Msa1455400:intron |
| TCTCATTTATTCTCTCATGA+TGG | 0.399753 | tig0035778:-20558 | Msa1455400:CDS |
| AAAGTTCATGATGGTGCTCC+TGG | 0.400456 | tig0035778:+17317 | None:intergenic |
| AAGTCACACAAGCTCTCTTC+CGG | 0.400505 | tig0035778:+19564 | None:intergenic |
| CACCGCAGCACCCCTAAATT+GGG | 0.400707 | tig0035778:+18140 | None:intergenic |
| GAGAGAGAGAAGGGTGAAGA+AGG | 0.406264 | tig0035778:+20832 | None:intergenic |
| GCCATACAGTCTCTCTTTGA+AGG | 0.407686 | tig0035778:-17807 | Msa1455400:CDS |
| ATTCATGTTATCTTCAATGT+TGG | 0.410052 | tig0035778:-17700 | Msa1455400:CDS |
| TGTATACCTTTGTGTTCCTA+TGG | 0.414069 | tig0035778:-17779 | Msa1455400:CDS |
| ATGTTATTCGGAACAATTGT+GGG | 0.415436 | tig0035778:-19699 | Msa1455400:CDS |
| ACACACTCTGCAAGAGAGAC+TGG | 0.419927 | tig0035778:-20752 | Msa1455400:five_prime_UTR |
| TTGTTCTTCTACCTTGTCTT+CGG | 0.421408 | tig0035778:-20680 | Msa1455400:CDS |
| TTCATGTTATCTTCAATGTT+GGG | 0.421818 | tig0035778:-17699 | Msa1455400:CDS |
| GAACTCCTTCACTTGGTTGG+TGG | 0.422041 | tig0035778:+16143 | None:intergenic |
| GACAGAAACTGCATTATGTA+AGG | 0.422323 | tig0035778:+16211 | None:intergenic |
| GCAGTTCCTACTAAAGCAAC+AGG | 0.424570 | tig0035778:-17459 | Msa1455400:CDS |
| TTAATCAATTACAGATTCAA+TGG | 0.425661 | tig0035778:+16267 | None:intergenic |
| CATATCCATACGTACTGTAT+AGG | 0.434125 | tig0035778:+19769 | None:intergenic |
| TGAAAACAGAAACAGAAGAT+TGG | 0.434785 | tig0035778:-16320 | Msa1455400:intron |
| CTTGAACTCCTTCACTTGGT+TGG | 0.437650 | tig0035778:+16140 | None:intergenic |
| GAGAAGATAATTGTTCTTGA+AGG | 0.443920 | tig0035778:+20577 | None:intergenic |
| TCTACATGGACAGAAAACTA+TGG | 0.449195 | tig0035778:-18192 | Msa1455400:CDS |
| AAACCTGCAGCAGCGTCAAA+GGG | 0.457365 | tig0035778:+18243 | None:intergenic |
| GGGATCTAAGTTTGTCTCGT+TGG | 0.458723 | tig0035778:-15971 | Msa1455400:three_prime_UTR |
| ATGGTGCTCCTGGCTTCCTC+AGG | 0.461583 | tig0035778:+17327 | None:intergenic |
| AGTACGTATGGATATGGAAA+AGG | 0.464152 | tig0035778:-19762 | Msa1455400:CDS |
| GTATGGCTATAGCTGGTGAT+TGG | 0.466459 | tig0035778:-19815 | Msa1455400:intron |
| CTGTATAGGTAGTAAACATA+TGG | 0.466801 | tig0035778:+19783 | None:intergenic |
| TTTGAGTGTGAAGGTAAATC+TGG | 0.466842 | tig0035778:-16169 | Msa1455400:three_prime_UTR |
| TCATCATTTGGGCTTAATGC+AGG | 0.467424 | tig0035778:+17753 | None:intergenic |
| GTACGTATGGATATGGAAAA+GGG | 0.469222 | tig0035778:-19761 | Msa1455400:CDS |
| ACAAAATTAAGACAATTAAA+GGG | 0.472104 | tig0035778:+15934 | None:intergenic |
| GGTGATGCAGCTTGCAATGT+AGG | 0.472241 | tig0035778:+19532 | None:intergenic |
| TTGATGTTGGGCCGTATCTT+GGG | 0.472991 | tig0035778:-19485 | Msa1455400:CDS |
| TTCTTCTACCTTGTCTTCGG+TGG | 0.475762 | tig0035778:-20677 | Msa1455400:CDS |
| GCTAGTTGCTGAGCATTTCA+AGG | 0.477810 | tig0035778:-19420 | Msa1455400:intron |
| AAAACCTGCAGCAGCGTCAA+AGG | 0.480550 | tig0035778:+18242 | None:intergenic |
| CAATACAGAGTCTTGATGTT+GGG | 0.480967 | tig0035778:-19497 | Msa1455400:CDS |
| ATAGATGAAGAGAGAGAGAA+GGG | 0.482836 | tig0035778:+20823 | None:intergenic |
| GTTCAAGCTAAAAGGATATG+TGG | 0.483906 | tig0035778:-16124 | Msa1455400:three_prime_UTR |
| GGTGGTGGTCTCTCATTCGC+CGG | 0.485040 | tig0035778:-17438 | Msa1455400:CDS |
| GGGTGAAGAAGGTTATATAG+TGG | 0.489029 | tig0035778:+20843 | None:intergenic |
| CCAATTTAGGGGTGCTGCGG+TGG | 0.489380 | tig0035778:-18139 | Msa1455400:CDS |
| ATAGCATACAGTGGTAAGAA+TGG | 0.492139 | tig0035778:+17578 | None:intergenic |
| GATAGATGAAGAGAGAGAGA+AGG | 0.495307 | tig0035778:+20822 | None:intergenic |
| AATACATTCCTGAGGAAGCC+AGG | 0.496275 | tig0035778:-17335 | Msa1455400:CDS |
| TAGCATACAGTGGTAAGAAT+GGG | 0.504293 | tig0035778:+17579 | None:intergenic |
| TTAGCTTGAACTCCTTCACT+TGG | 0.505499 | tig0035778:+16136 | None:intergenic |
| AAGGCGACTGCTCGTGATTG+CGG | 0.515226 | tig0035778:-16846 | Msa1455400:CDS |
| ACCTTCAAAGAGAGACTGTA+TGG | 0.515882 | tig0035778:+17806 | None:intergenic |
| GTGGTGGTCTCTCATTCGCC+GGG | 0.524709 | tig0035778:-17437 | Msa1455400:CDS |
| TCAATACAGAGTCTTGATGT+TGG | 0.527647 | tig0035778:-19498 | Msa1455400:CDS |
| AAATGTCCTTGTTGATACAT+TGG | 0.532054 | tig0035778:-18283 | Msa1455400:CDS |
| TACATTGGCTCTTGGACCAG+TGG | 0.533547 | tig0035778:-18268 | Msa1455400:CDS |
| ATAGCTGGTGATTGGTTACA+AGG | 0.536193 | tig0035778:-19807 | Msa1455400:intron |
| ACCCAAAAGCTGAATGCACC+CGG | 0.540450 | tig0035778:+17419 | None:intergenic |
| ATCAGCTACGACGAGTGCGT+TGG | 0.544552 | tig0035778:+20885 | None:intergenic |
| AACAGAAGATTGGCAACTCA+AGG | 0.548096 | tig0035778:-16310 | Msa1455400:CDS |
| CCTACTAAAGCAACAGGTGG+TGG | 0.548441 | tig0035778:-17453 | Msa1455400:CDS |
| TGGCAATGCCACCCAAGATA+CGG | 0.550294 | tig0035778:+19474 | None:intergenic |
| TACTACCTATACAGTACGTA+TGG | 0.551044 | tig0035778:-19774 | Msa1455400:CDS |
| GTTGTAAGATTTGTGTGAGA+TGG | 0.553469 | tig0035778:+20773 | None:intergenic |
| AGATTGGCAACTCAAGGAAA+GGG | 0.555844 | tig0035778:-16304 | Msa1455400:CDS |
| GGATATGGAAAAGGGGAGAT+CGG | 0.557120 | tig0035778:-19753 | Msa1455400:CDS |
| GGCTTAATGCAGGAGTCCAT+AGG | 0.558342 | tig0035778:+17763 | None:intergenic |
| AAGATTGGCAACTCAAGGAA+AGG | 0.560058 | tig0035778:-16305 | Msa1455400:CDS |
| CAGATTCAATGGCTCTGACT+CGG | 0.562995 | tig0035778:+16278 | None:intergenic |
| TTCAAGCTAAAAGGATATGT+GGG | 0.564130 | tig0035778:-16123 | Msa1455400:three_prime_UTR |
| TGATCGTGATATTATCTACA+TGG | 0.566672 | tig0035778:-18206 | Msa1455400:CDS |
| TGATAGGAAGAGTTAAACTC+AGG | 0.566700 | tig0035778:-20981 | None:intergenic |
| GATCTCATCTTCATAATGGA+TGG | 0.570928 | tig0035778:+17360 | None:intergenic |
| TGCCAAACATAACAGTGATA+GGG | 0.571327 | tig0035778:+16906 | None:intergenic |
| GTAAGATACTAGCCATGAAG+AGG | 0.572565 | tig0035778:+16870 | None:intergenic |
| CACACTCTGCAAGAGAGACT+GGG | 0.572731 | tig0035778:-20751 | Msa1455400:five_prime_UTR |
| TGCATTAATTAAATGTAGAG+TGG | 0.572950 | tig0035778:+15897 | None:intergenic |
| TGCCGAAAATAGAAGTGAAG+TGG | 0.574265 | tig0035778:+19454 | None:intergenic |
| GATGTTATTCGGAACAATTG+TGG | 0.575416 | tig0035778:-19700 | Msa1455400:CDS |
| CGGCTAATCCACCGAAGACA+AGG | 0.577466 | tig0035778:+20669 | None:intergenic |
| AACATCAAGACTCTGTATTG+AGG | 0.584283 | tig0035778:+19500 | None:intergenic |
| AGCTTGCTTGCCCAATTTAG+GGG | 0.587066 | tig0035778:-18150 | Msa1455400:CDS |
| ACCTGCAGCAGCGTCAAAGG+GGG | 0.590199 | tig0035778:+18245 | None:intergenic |
| AAGAACTATACCAGAAGCAA+TGG | 0.596618 | tig0035778:+18116 | None:intergenic |
| TCTGTATTGAGGAGAATGCT+TGG | 0.601257 | tig0035778:+19511 | None:intergenic |
| GCTATCATTAACATTCTCGA+AGG | 0.610234 | tig0035778:-18355 | Msa1455400:CDS |
| TACTCATATCAAGTTTGATG+AGG | 0.610558 | tig0035778:+15851 | None:intergenic |
| GATAGGAAGAGTTAAACTCA+GGG | 0.611651 | tig0035778:-20980 | None:intergenic |
| AGAGGGGCTTTGATCAGCAA+TGG | 0.613910 | tig0035778:-18377 | Msa1455400:CDS |
| TGCCCAATTTAGGGGTGCTG+CGG | 0.615185 | tig0035778:-18142 | Msa1455400:CDS |
| TTCATACCACTCGTGTCTCG+TGG | 0.619210 | tig0035778:-20798 | Msa1455400:five_prime_UTR |
| ACTCATATCAAGTTTGATGA+GGG | 0.621077 | tig0035778:+15852 | None:intergenic |
| GGTGCCCACCAACCAAGTGA+AGG | 0.638815 | tig0035778:-16148 | Msa1455400:three_prime_UTR |
| AACCTGCAGCAGCGTCAAAG+GGG | 0.643247 | tig0035778:+18244 | None:intergenic |
| GGCTCGTTCATCATTCCGTG+TGG | 0.650417 | tig0035778:-17652 | Msa1455400:CDS |
| TACGTATGGATATGGAAAAG+GGG | 0.653213 | tig0035778:-19760 | Msa1455400:CDS |
| ACTACGCAATTTGAGTGTGA+AGG | 0.660789 | tig0035778:-16178 | Msa1455400:three_prime_UTR |
| CAAGAGCCAATGTATCAACA+AGG | 0.662983 | tig0035778:+18277 | None:intergenic |
| ATGTTGGGCCGTATCTTGGG+TGG | 0.669526 | tig0035778:-19482 | Msa1455400:CDS |
| TCATGGCTAGTATCTTACAA+AGG | 0.673331 | tig0035778:-16865 | Msa1455400:CDS |
| CTCGAGAACAGCAACAACAG+CGG | 0.691907 | tig0035778:+20649 | None:intergenic |
| GAGATCTCAATACATTCCTG+AGG | 0.692563 | tig0035778:-17343 | Msa1455400:CDS |
| ATGGTACCACGAGACACGAG+TGG | 0.702335 | tig0035778:+20792 | None:intergenic |
| GTTCCTACTAAAGCAACAGG+TGG | 0.707303 | tig0035778:-17456 | Msa1455400:CDS |
| AGGAGTCCATAGGAACACAA+AGG | 0.732126 | tig0035778:+17773 | None:intergenic |
| TCTGCATGTAGCTCTCCACA+CGG | 0.735568 | tig0035778:+17637 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTGAAATTGAATT+TGG | - | tig0035778:16449-16468 | Msa1455400:intron | 10.0% |
| !! | TATATGATTAACATATTTAA+AGG | + | tig0035778:17522-17541 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTTATATGAAAAT+GGG | + | tig0035778:20430-20449 | None:intergenic | 10.0% |
| !!! | TTTTTTGTTTTATATGAAAA+TGG | + | tig0035778:20431-20450 | None:intergenic | 10.0% |
| !! | TATTCAAATTTGAATAATGT+TGG | - | tig0035778:16738-16757 | Msa1455400:intron | 15.0% |
| !! | ATCAAATCAACTATATTTAA+AGG | + | tig0035778:16811-16830 | None:intergenic | 15.0% |
| !! | AATATGTTAATCATATATGA+AGG | - | tig0035778:17525-17544 | Msa1455400:intron | 15.0% |
| !! | ACTATTATATAAGACATTTA+CGG | + | tig0035778:17551-17570 | None:intergenic | 15.0% |
| !! | AAATTTAGTAACTATTAACT+AGG | - | tig0035778:17817-17836 | Msa1455400:CDS | 15.0% |
| !! | TAAAAAATGATAACAGAATA+AGG | + | tig0035778:18880-18899 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTTTTTATGTAC+AGG | - | tig0035778:19867-19886 | Msa1455400:intron | 15.0% |
| !! | ACAAAATTAAGACAATTAAA+GGG | + | tig0035778:20875-20894 | None:intergenic | 15.0% |
| !! | TACAAAATTAAGACAATTAA+AGG | + | tig0035778:20876-20895 | None:intergenic | 15.0% |
| !!! | TAATTACCTTACTTTTTTGT+GGG | + | tig0035778:15883-15902 | None:intergenic | 20.0% |
| !! | AAGAAATAATAAACAGAAGA+TGG | + | tig0035778:16369-16388 | None:intergenic | 20.0% |
| !!! | TTTTATGATTTTCTTAGCTT+TGG | - | tig0035778:16540-16559 | Msa1455400:intron | 20.0% |
| !! | AAATTTGAATAATGTTGGAT+GGG | - | tig0035778:16743-16762 | Msa1455400:intron | 20.0% |
| !!! | TTAGTTTTAGTGATCTTAAT+AGG | - | tig0035778:16958-16977 | Msa1455400:intron | 20.0% |
| !! | ACTTCTTAATATGAAAATCA+GGG | - | tig0035778:17218-17237 | Msa1455400:intron | 20.0% |
| !!! | CTTTATTATCAAGTTTTATC+TGG | - | tig0035778:17443-17462 | Msa1455400:CDS | 20.0% |
| !!! | ACAACTACAAATTTTGAAAA+TGG | - | tig0035778:17752-17771 | Msa1455400:CDS | 20.0% |
| !! | TTATGTAAATATCAACTATG+TGG | - | tig0035778:17861-17880 | Msa1455400:intron | 20.0% |
| !! | TTCATTTAACGAAACAATTA+AGG | - | tig0035778:18005-18024 | Msa1455400:intron | 20.0% |
| !! | TATGATAAATTTATAAACCC+CGG | + | tig0035778:18221-18240 | None:intergenic | 20.0% |
| !! | AAGTACAAAATGTAAAATGA+AGG | + | tig0035778:18377-18396 | None:intergenic | 20.0% |
| !! | ATTACTATGAATTTGAACTT+TGG | - | tig0035778:18750-18769 | Msa1455400:intron | 20.0% |
| !! | AATTAGTGCAATATAAAAGT+TGG | + | tig0035778:19658-19677 | None:intergenic | 20.0% |
| !! | GTTTGTAAAGAAAATGTATT+TGG | + | tig0035778:20400-20419 | None:intergenic | 20.0% |
| !! | AAAACAAAAAAGAAAGTTCT+TGG | - | tig0035778:20440-20459 | Msa1455400:intron | 20.0% |
| !! | TTAATCAATTACAGATTCAA+TGG | + | tig0035778:20542-20561 | None:intergenic | 20.0% |
| !!! | ATCTGTAATTGATTAAGTTT+TGG | - | tig0035778:20546-20565 | Msa1455400:intron | 20.0% |
| !!! | TCTGTAATTGATTAAGTTTT+GGG | - | tig0035778:20547-20566 | Msa1455400:intron | 20.0% |
| !!! | TTACTTATGTCAATTCTTTT+GGG | - | tig0035778:20808-20827 | Msa1455400:five_prime_UTR | 20.0% |
| !!! | GTAATTACCTTACTTTTTTG+TGG | + | tig0035778:15884-15903 | None:intergenic | 25.0% |
| !!! | TTATATAGTGGTTTTGTGAT+GGG | + | tig0035778:15954-15973 | None:intergenic | 25.0% |
| ! | ACAGAGAAATGTTGTAAAAT+TGG | + | tig0035778:16088-16107 | None:intergenic | 25.0% |
| ! | TGAAAACGATGTAATTGAAA+TGG | - | tig0035778:16474-16493 | Msa1455400:intron | 25.0% |
| !!! | ATAGTAGTGATGTGTTTTTT+TGG | - | tig0035778:16572-16591 | Msa1455400:intron | 25.0% |
| ! | CAAATTTGAATAATGTTGGA+TGG | - | tig0035778:16742-16761 | Msa1455400:intron | 25.0% |
| !!! | TAATAGGTTTCGTTTTTGTA+TGG | - | tig0035778:16974-16993 | Msa1455400:intron | 25.0% |
| ! | GACTTCTTAATATGAAAATC+AGG | - | tig0035778:17217-17236 | Msa1455400:intron | 25.0% |
| ! | CTTCTTAATATGAAAATCAG+GGG | - | tig0035778:17219-17238 | Msa1455400:intron | 25.0% |
| !!! | TTTGAAAATGGTTTTAGATG+TGG | - | tig0035778:17764-17783 | Msa1455400:CDS | 25.0% |
| !!! | ATATCTTCATTGCTTGTTTT+TGG | - | tig0035778:18063-18082 | Msa1455400:intron | 25.0% |
| !!! | TTGGTTTTCATATCCAATTT+AGG | - | tig0035778:18082-18101 | Msa1455400:intron | 25.0% |
| !! | TGGTTTTCATATCCAATTTA+GGG | - | tig0035778:18083-18102 | Msa1455400:intron | 25.0% |
| !! | ATTTTACAATATCTTCCAAG+TGG | - | tig0035778:18265-18284 | Msa1455400:CDS | 25.0% |
| ! | TAAGGGTAAAAATTGTATTG+TGG | + | tig0035778:18313-18332 | None:intergenic | 25.0% |
| ! | AACAATGACAAAACTATCTA+AGG | + | tig0035778:18717-18736 | None:intergenic | 25.0% |
| !! | TTTTGTCATTGTTTATACAG+TGG | - | tig0035778:18724-18743 | Msa1455400:intron | 25.0% |
| !!! | GGCCATTATTTTATTTTTTC+CGG | - | tig0035778:18814-18833 | Msa1455400:intron | 25.0% |
| !!! | GCCATTATTTTATTTTTTCC+GGG | - | tig0035778:18815-18834 | Msa1455400:intron | 25.0% |
| ! | TCCCGGAAAAAATAAAATAA+TGG | + | tig0035778:18819-18838 | None:intergenic | 25.0% |
| ! | TGTTGCAAAAATAAAACCAT+GGG | + | tig0035778:19087-19106 | None:intergenic | 25.0% |
| ! | ATGTTGCAAAAATAAAACCA+TGG | + | tig0035778:19088-19107 | None:intergenic | 25.0% |
| ! | ATTCATGTTATCTTCAATGT+TGG | - | tig0035778:19106-19125 | Msa1455400:intron | 25.0% |
| ! | TTCATGTTATCTTCAATGTT+GGG | - | tig0035778:19107-19126 | Msa1455400:intron | 25.0% |
| !! | ATAATTTGACTTTGTTACTG+TGG | - | tig0035778:19313-19332 | Msa1455400:intron | 25.0% |
| !!! | TCAAAAGCATTATATCTAAG+CGG | + | tig0035778:19577-19596 | None:intergenic | 25.0% |
| ! | TTGCAAAAAGCAAAAGATAT+AGG | - | tig0035778:19764-19783 | Msa1455400:CDS | 25.0% |
| !!! | TAATTGATTAAGTTTTGGGA+AGG | - | tig0035778:20551-20570 | Msa1455400:intron | 25.0% |
| !!! | ATTGCCTATTATTTTACTTG+AGG | - | tig0035778:20759-20778 | Msa1455400:five_prime_UTR | 25.0% |
| ! | TTCTCCTCAAGTAAAATAAT+AGG | + | tig0035778:20766-20785 | None:intergenic | 25.0% |
| !! | CTTACTTATGTCAATTCTTT+TGG | - | tig0035778:20807-20826 | Msa1455400:five_prime_UTR | 25.0% |
| !! | TACTTATGTCAATTCTTTTG+GGG | - | tig0035778:20809-20828 | Msa1455400:five_prime_UTR | 25.0% |
| ! | TGCATTAATTAAATGTAGAG+TGG | + | tig0035778:20912-20931 | None:intergenic | 25.0% |
| TCTTTACCCACAAAAAAGTA+AGG | - | tig0035778:15874-15893 | Msa1455400:three_prime_UTR | 30.0% | |
| !!! | GTTATATAGTGGTTTTGTGA+TGG | + | tig0035778:15955-15974 | None:intergenic | 30.0% |
| GAGAAGATAATTGTTCTTGA+AGG | + | tig0035778:16232-16251 | None:intergenic | 30.0% | |
| TCTCATTTATTCTCTCATGA+TGG | - | tig0035778:16248-16267 | Msa1455400:three_prime_UTR | 30.0% | |
| CTCATTTATTCTCTCATGAT+GGG | - | tig0035778:16249-16268 | Msa1455400:three_prime_UTR | 30.0% | |
| GAGTAAAAATCACAACTTCA+AGG | + | tig0035778:16600-16619 | None:intergenic | 30.0% | |
| CTGTATAGGTAGTAAACATA+TGG | + | tig0035778:17026-17045 | None:intergenic | 30.0% | |
| ATGTTATTCGGAACAATTGT+GGG | - | tig0035778:17107-17126 | Msa1455400:intron | 30.0% | |
| AAAATGCTACGACATATGTA+TGG | + | tig0035778:17186-17205 | None:intergenic | 30.0% | |
| TATGATTACTTTATACACGC+AGG | - | tig0035778:17467-17486 | Msa1455400:CDS | 30.0% | |
| TAGTTATTATAAGTACCACG+AGG | - | tig0035778:17570-17589 | Msa1455400:intron | 30.0% | |
| AGATGTGGATCATTATGTTT+AGG | - | tig0035778:17779-17798 | Msa1455400:CDS | 30.0% | |
| AAAGCAGAAGAAACAACTAA+TGG | + | tig0035778:18110-18129 | None:intergenic | 30.0% | |
| !! | TTCCAAAAGATGTTGATTTC+CGG | - | tig0035778:18199-18218 | Msa1455400:CDS | 30.0% |
| ! | GCATGTTTATCTTGTTTAGA+GGG | + | tig0035778:18245-18264 | None:intergenic | 30.0% |
| ! | TGCATGTTTATCTTGTTTAG+AGG | + | tig0035778:18246-18265 | None:intergenic | 30.0% |
| TTACCCTTAAAATCTGACAA+AGG | - | tig0035778:18324-18343 | Msa1455400:CDS | 30.0% | |
| TACCCTTAAAATCTGACAAA+GGG | - | tig0035778:18325-18344 | Msa1455400:CDS | 30.0% | |
| ! | AACCCTTTGTCAGATTTTAA+GGG | + | tig0035778:18330-18349 | None:intergenic | 30.0% |
| ! | AAACCCTTTGTCAGATTTTA+AGG | + | tig0035778:18331-18350 | None:intergenic | 30.0% |
| AAGGCTATATTTCTTGGAAA+TGG | - | tig0035778:18470-18489 | Msa1455400:intron | 30.0% | |
| AAATGTCCTTGTTGATACAT+TGG | - | tig0035778:18523-18542 | Msa1455400:intron | 30.0% | |
| TGATCGTGATATTATCTACA+TGG | - | tig0035778:18600-18619 | Msa1455400:intron | 30.0% | |
| AATTCATGAACATCTGTACT+AGG | + | tig0035778:18931-18950 | None:intergenic | 30.0% | |
| ! | GATGAAAAAATAGCTTTGCT+TGG | - | tig0035778:18975-18994 | Msa1455400:intron | 30.0% |
| TTGCAAAAATAAAACCATGG+GGG | + | tig0035778:19085-19104 | None:intergenic | 30.0% | |
| GTTGCAAAAATAAAACCATG+GGG | + | tig0035778:19086-19105 | None:intergenic | 30.0% | |
| ATGTAAATCACAGTACCAAT+GGG | + | tig0035778:19277-19296 | None:intergenic | 30.0% | |
| !! | TGTACTTTTGAAAGTTGTGT+TGG | - | tig0035778:19413-19432 | Msa1455400:intron | 30.0% |
| TTGAGATCTCATCTTCATAA+TGG | + | tig0035778:19453-19472 | None:intergenic | 30.0% | |
| ! | TAGATTGTTTAAGATCAAGC+TGG | + | tig0035778:19634-19653 | None:intergenic | 30.0% |
| ATATTGCACTAATTTGAACC+TGG | - | tig0035778:19664-19683 | Msa1455400:intron | 30.0% | |
| AAGAAAGGGTTTATAATTCC+AGG | + | tig0035778:19685-19704 | None:intergenic | 30.0% | |
| CAGACATCGTATTTAAGAAA+GGG | + | tig0035778:19699-19718 | None:intergenic | 30.0% | |
| CTTTCTTAAATACGATGTCT+GGG | - | tig0035778:19698-19717 | Msa1455400:CDS | 30.0% | |
| GTAGAATTCAACAAGATAAC+TGG | + | tig0035778:19728-19747 | None:intergenic | 30.0% | |
| !!! | TTTTGCTTTTTGCAAGAAAG+GGG | + | tig0035778:19759-19778 | None:intergenic | 30.0% |
| !!! | CTTTTGCTTTTTGCAAGAAA+GGG | + | tig0035778:19760-19779 | None:intergenic | 30.0% |
| !!! | TCTTTTGCTTTTTGCAAGAA+AGG | + | tig0035778:19761-19780 | None:intergenic | 30.0% |
| !! | AATAAGTTTTGATCCCATTG+CGG | + | tig0035778:20039-20058 | None:intergenic | 30.0% |
| GTTGATATGCCAGATAATAT+AGG | + | tig0035778:20338-20357 | None:intergenic | 30.0% | |
| TGAAAACAGAAACAGAAGAT+TGG | - | tig0035778:20486-20505 | Msa1455400:intron | 30.0% | |
| TTCAAGCTAAAAGGATATGT+GGG | - | tig0035778:20683-20702 | Msa1455400:CDS | 30.0% | |
| AGTAAGAACTACTACCAAAA+TGG | + | tig0035778:20793-20812 | None:intergenic | 30.0% | |
| ! | ACTTATGTCAATTCTTTTGG+GGG | - | tig0035778:20810-20829 | Msa1455400:five_prime_UTR | 30.0% |
| ACTCATATCAAGTTTGATGA+GGG | + | tig0035778:20957-20976 | None:intergenic | 30.0% | |
| TACTCATATCAAGTTTGATG+AGG | + | tig0035778:20958-20977 | None:intergenic | 30.0% | |
| ATAGATGAAGAGAGAGAGAA+GGG | + | tig0035778:15986-16005 | None:intergenic | 35.0% | |
| GTTGTAAGATTTGTGTGAGA+TGG | + | tig0035778:16036-16055 | None:intergenic | 35.0% | |
| TTGTTCTTCTACCTTGTCTT+CGG | - | tig0035778:16126-16145 | Msa1455400:three_prime_UTR | 35.0% | |
| !!! | GCGTGATTTTGAAATCTGAA+TGG | - | tig0035778:16503-16522 | Msa1455400:intron | 35.0% |
| TACTACCTATACAGTACGTA+TGG | - | tig0035778:17032-17051 | Msa1455400:intron | 35.0% | |
| CATATCCATACGTACTGTAT+AGG | + | tig0035778:17040-17059 | None:intergenic | 35.0% | |
| CTATACAGTACGTATGGATA+TGG | - | tig0035778:17038-17057 | Msa1455400:intron | 35.0% | |
| AGTACGTATGGATATGGAAA+AGG | - | tig0035778:17044-17063 | Msa1455400:intron | 35.0% | |
| GTACGTATGGATATGGAAAA+GGG | - | tig0035778:17045-17064 | Msa1455400:intron | 35.0% | |
| TACGTATGGATATGGAAAAG+GGG | - | tig0035778:17046-17065 | Msa1455400:intron | 35.0% | |
| AACTCTTCATTGCTGGATTT+GGG | - | tig0035778:17078-17097 | Msa1455400:intron | 35.0% | |
| TTTGGGTCTTCGATGTTATT+CGG | - | tig0035778:17095-17114 | Msa1455400:intron | 35.0% | |
| GATGTTATTCGGAACAATTG+TGG | - | tig0035778:17106-17125 | Msa1455400:intron | 35.0% | |
| TTAATATGAAAATCAGGGGC+CGG | - | tig0035778:17223-17242 | Msa1455400:intron | 35.0% | |
| AACATCAAGACTCTGTATTG+AGG | + | tig0035778:17309-17328 | None:intergenic | 35.0% | |
| TCAATACAGAGTCTTGATGT+TGG | - | tig0035778:17308-17327 | Msa1455400:CDS | 35.0% | |
| CAATACAGAGTCTTGATGTT+GGG | - | tig0035778:17309-17328 | Msa1455400:CDS | 35.0% | |
| !! | TGCCACTTCACTTCTATTTT+CGG | - | tig0035778:17350-17369 | Msa1455400:CDS | 35.0% |
| !! | CAGGAAGTGCTATAATTTGA+AGG | - | tig0035778:17486-17505 | Msa1455400:intron | 35.0% |
| ! | GAAGTGCTATAATTTGAAGG+TGG | - | tig0035778:17489-17508 | Msa1455400:intron | 35.0% |
| ACTAAATTTATGCAACACGC+AGG | + | tig0035778:17806-17825 | None:intergenic | 35.0% | |
| ATATCAACTATGTGGTGTAG+TGG | - | tig0035778:17869-17888 | Msa1455400:intron | 35.0% | |
| ACAAACACACTAGTTGCTAT+CGG | - | tig0035778:17948-17967 | Msa1455400:intron | 35.0% | |
| TAACGAAACAATTAAGGCAG+AGG | - | tig0035778:18011-18030 | Msa1455400:intron | 35.0% | |
| ! | ACAACTAATGGACCCTAAAT+TGG | + | tig0035778:18098-18117 | None:intergenic | 35.0% |
| !! | TCCAAAAGATGTTGATTTCC+GGG | - | tig0035778:18200-18219 | Msa1455400:CDS | 35.0% |
| GTGAGCAAAAATCACTTTGT+TGG | + | tig0035778:18291-18310 | None:intergenic | 35.0% | |
| AAATGAAGGAATCAAGACGA+AGG | + | tig0035778:18363-18382 | None:intergenic | 35.0% | |
| TTTCCACATGAATCTATCAG+AGG | - | tig0035778:18411-18430 | Msa1455400:intron | 35.0% | |
| TTCCACATGAATCTATCAGA+GGG | - | tig0035778:18412-18431 | Msa1455400:intron | 35.0% | |
| GCTATCATTAACATTCTCGA+AGG | - | tig0035778:18451-18470 | Msa1455400:intron | 35.0% | |
| TTCTCGAAGGCTATATTTCT+TGG | - | tig0035778:18464-18483 | Msa1455400:intron | 35.0% | |
| !! | GTCTTGTTGCCATATTTTCT+GGG | - | tig0035778:18492-18511 | Msa1455400:intron | 35.0% |
| TCTACATGGACAGAAAACTA+TGG | - | tig0035778:18614-18633 | Msa1455400:intron | 35.0% | |
| AAGAACTATACCAGAAGCAA+TGG | + | tig0035778:18693-18712 | None:intergenic | 35.0% | |
| !! | ACTTTGGAACTCTTAATGTG+TGG | - | tig0035778:18766-18785 | Msa1455400:intron | 35.0% |
| CATTAATCTACCTAACGAGT+GGG | - | tig0035778:18789-18808 | Msa1455400:intron | 35.0% | |
| ATTTCAACATACATCACTCC+CGG | + | tig0035778:18836-18855 | None:intergenic | 35.0% | |
| ! | TTCATCTGAAACGCAATGAA+TGG | + | tig0035778:18961-18980 | None:intergenic | 35.0% |
| TGTATACCTTTGTGTTCCTA+TGG | - | tig0035778:19027-19046 | Msa1455400:intron | 35.0% | |
| TAGCATACAGTGGTAAGAAT+GGG | + | tig0035778:19230-19249 | None:intergenic | 35.0% | |
| ATAGCATACAGTGGTAAGAA+TGG | + | tig0035778:19231-19250 | None:intergenic | 35.0% | |
| ATTGGAAGAATAGCATACAG+TGG | + | tig0035778:19240-19259 | None:intergenic | 35.0% | |
| GATGTAAATCACAGTACCAA+TGG | + | tig0035778:19278-19297 | None:intergenic | 35.0% | |
| ! | AAAGTTGTGTTGGCATATTC+TGG | - | tig0035778:19423-19442 | Msa1455400:CDS | 35.0% |
| ! | GATCTCATCTTCATAATGGA+TGG | + | tig0035778:19449-19468 | None:intergenic | 35.0% |
| AATGCGGAAAAAGTTCATGA+TGG | + | tig0035778:19501-19520 | None:intergenic | 35.0% | |
| CAAAAATGTTCAGAGGAATG+CGG | + | tig0035778:19517-19536 | None:intergenic | 35.0% | |
| ACACACACAAAAATGTTCAG+AGG | + | tig0035778:19524-19543 | None:intergenic | 35.0% | |
| AAGCATTATATCTAAGCGGT+AGG | + | tig0035778:19573-19592 | None:intergenic | 35.0% | |
| CCAGACATCGTATTTAAGAA+AGG | + | tig0035778:19700-19719 | None:intergenic | 35.0% | |
| CCTTTCTTAAATACGATGTC+TGG | - | tig0035778:19697-19716 | Msa1455400:CDS | 35.0% | |
| TTCCCTATCACTGTTATGTT+TGG | - | tig0035778:19898-19917 | Msa1455400:intron | 35.0% | |
| TGCCAAACATAACAGTGATA+GGG | + | tig0035778:19903-19922 | None:intergenic | 35.0% | |
| ATGCCAAACATAACAGTGAT+AGG | + | tig0035778:19904-19923 | None:intergenic | 35.0% | |
| TCATGGCTAGTATCTTACAA+AGG | - | tig0035778:19941-19960 | Msa1455400:intron | 35.0% | |
| ATGTTGAATTTGTACCGCAA+TGG | - | tig0035778:20022-20041 | Msa1455400:intron | 35.0% | |
| TGTTGAATTTGTACCGCAAT+GGG | - | tig0035778:20023-20042 | Msa1455400:intron | 35.0% | |
| TATACACTACACAAAGCCAA+AGG | + | tig0035778:20142-20161 | None:intergenic | 35.0% | |
| AGGCAGGATATATAACACAA+GGG | + | tig0035778:20167-20186 | None:intergenic | 35.0% | |
| GATCTACCAAAAATAGCTTG+AGG | + | tig0035778:20187-20206 | None:intergenic | 35.0% | |
| ! | CATCTAGCTTGAAACATGTT+TGG | + | tig0035778:20228-20247 | None:intergenic | 35.0% |
| ATTGCCCACTTTGGTTAATT+GGG | - | tig0035778:20248-20267 | Msa1455400:intron | 35.0% | |
| TGCCTTTAAGTAAAAGTCCA+TGG | - | tig0035778:20282-20301 | Msa1455400:intron | 35.0% | |
| GCCTTTAAGTAAAAGTCCAT+GGG | - | tig0035778:20283-20302 | Msa1455400:intron | 35.0% | |
| ! | ACCCATGGACTTTTACTTAA+AGG | + | tig0035778:20287-20306 | None:intergenic | 35.0% |
| TATGCCAGATAATATAGGCA+GGG | + | tig0035778:20333-20352 | None:intergenic | 35.0% | |
| ATATGCCAGATAATATAGGC+AGG | + | tig0035778:20334-20353 | None:intergenic | 35.0% | |
| TTATCTGGCATATCAACACA+TGG | - | tig0035778:20341-20360 | Msa1455400:intron | 35.0% | |
| GACAGAAACTGCATTATGTA+AGG | + | tig0035778:20598-20617 | None:intergenic | 35.0% | |
| TTTGAGTGTGAAGGTAAATC+TGG | - | tig0035778:20637-20656 | Msa1455400:CDS | 35.0% | |
| GTTCAAGCTAAAAGGATATG+TGG | - | tig0035778:20682-20701 | Msa1455400:CDS | 35.0% | |
| ! | TTGAGGAGAAATCTCCATTT+TGG | - | tig0035778:20776-20795 | Msa1455400:five_prime_UTR | 35.0% |
| ! | CTTATGTCAATTCTTTTGGG+GGG | - | tig0035778:20811-20830 | Msa1455400:five_prime_UTR | 35.0% |
| GGGTGAAGAAGGTTATATAG+TGG | + | tig0035778:15966-15985 | None:intergenic | 40.0% | |
| GATAGATGAAGAGAGAGAGA+AGG | + | tig0035778:15987-16006 | None:intergenic | 40.0% | |
| TCTCTGTTAACTCGCGATAA+TGG | - | tig0035778:16101-16120 | Msa1455400:three_prime_UTR | 40.0% | |
| GCTTTCGATGACATTGTTGT+TGG | - | tig0035778:16891-16910 | Msa1455400:CDS | 40.0% | |
| ! | CGTTTTTGTATGGCTATAGC+TGG | - | tig0035778:16984-17003 | Msa1455400:intron | 40.0% |
| ! | ATAGCTGGTGATTGGTTACA+AGG | - | tig0035778:16999-17018 | Msa1455400:intron | 40.0% |
| CAACTCTTCATTGCTGGATT+TGG | - | tig0035778:17077-17096 | Msa1455400:intron | 40.0% | |
| TCTGTATTGAGGAGAATGCT+TGG | + | tig0035778:17298-17317 | None:intergenic | 40.0% | |
| TGCCGAAAATAGAAGTGAAG+TGG | + | tig0035778:17355-17374 | None:intergenic | 40.0% | |
| ! | TATTTTCGGCATTTGAGTCG+TGG | - | tig0035778:17364-17383 | Msa1455400:CDS | 40.0% |
| ! | CAATACAGTTTGATGGCATC+TGG | - | tig0035778:18034-18053 | Msa1455400:intron | 40.0% |
| ! | TTGGAATCAACCTAGTTTGC+AGG | + | tig0035778:18185-18204 | None:intergenic | 40.0% |
| !! | CCAAAAGATGTTGATTTCCG+GGG | - | tig0035778:18201-18220 | Msa1455400:CDS | 40.0% |
| AAATCACTTTGTTGGCCACT+TGG | + | tig0035778:18283-18302 | None:intergenic | 40.0% | |
| TCCACATGAATCTATCAGAG+GGG | - | tig0035778:18413-18432 | Msa1455400:intron | 40.0% | |
| !!! | GGTCTTGTTGCCATATTTTC+TGG | - | tig0035778:18491-18510 | Msa1455400:intron | 40.0% |
| TCCAAACAGCCCAGAAAATA+TGG | + | tig0035778:18504-18523 | None:intergenic | 40.0% | |
| CAAGAGCCAATGTATCAACA+AGG | + | tig0035778:18532-18551 | None:intergenic | 40.0% | |
| !! | CTTGTTGATACATTGGCTCT+TGG | - | tig0035778:18530-18549 | Msa1455400:intron | 40.0% |
| ! | GCTGCAGGTTTTCTTACAAT+TGG | - | tig0035778:18575-18594 | Msa1455400:intron | 40.0% |
| GCATTAATCTACCTAACGAG+TGG | - | tig0035778:18788-18807 | Msa1455400:intron | 40.0% | |
| ACCTTCAAAGAGAGACTGTA+TGG | + | tig0035778:19003-19022 | None:intergenic | 40.0% | |
| TCATCATTTGGGCTTAATGC+AGG | + | tig0035778:19056-19075 | None:intergenic | 40.0% | |
| TAAATCACAGTACCAATGGG+TGG | + | tig0035778:19274-19293 | None:intergenic | 40.0% | |
| GAGATCTCAATACATTCCTG+AGG | - | tig0035778:19463-19482 | Msa1455400:CDS | 40.0% | |
| TCTTAAATACGATGTCTGGG+TGG | - | tig0035778:19701-19720 | Msa1455400:CDS | 40.0% | |
| ! | TTTTGCAAGAAAGGGGTTGT+AGG | + | tig0035778:19752-19771 | None:intergenic | 40.0% |
| ACAGTTAGAGATAGAGAGAG+AGG | + | tig0035778:19803-19822 | None:intergenic | 40.0% | |
| ! | GTGCTCAATTTTCCTCTTCA+TGG | - | tig0035778:19924-19943 | Msa1455400:intron | 40.0% |
| GTAAGATACTAGCCATGAAG+AGG | + | tig0035778:19939-19958 | None:intergenic | 40.0% | |
| AGCAACAGATCATAGTGTGA+GGG | + | tig0035778:20001-20020 | None:intergenic | 40.0% | |
| AAGCAACAGATCATAGTGTG+AGG | + | tig0035778:20002-20021 | None:intergenic | 40.0% | |
| TATCTTTGTCACACAGTGAC+AGG | + | tig0035778:20073-20092 | None:intergenic | 40.0% | |
| GCAATTTCTCAGATAAGACG+CGG | + | tig0035778:20112-20131 | None:intergenic | 40.0% | |
| AGAAATTGCTCCTACACCTT+TGG | - | tig0035778:20123-20142 | Msa1455400:intron | 40.0% | |
| GAGGCAGGATATATAACACA+AGG | + | tig0035778:20168-20187 | None:intergenic | 40.0% | |
| !! | ATCCTGCCTCAAGCTATTTT+TGG | - | tig0035778:20178-20197 | Msa1455400:intron | 40.0% |
| TACCAAAAATAGCTTGAGGC+AGG | + | tig0035778:20183-20202 | None:intergenic | 40.0% | |
| GATTGCCCACTTTGGTTAAT+TGG | - | tig0035778:20247-20266 | Msa1455400:intron | 40.0% | |
| CATGCCCAATTAACCAAAGT+GGG | + | tig0035778:20255-20274 | None:intergenic | 40.0% | |
| AGCAGCAAAGAAAAAACCCA+TGG | + | tig0035778:20302-20321 | None:intergenic | 40.0% | |
| !!! | GGGTTTTTTCTTTGCTGCTA+AGG | - | tig0035778:20303-20322 | Msa1455400:intron | 40.0% |
| ! | ATGTATTTGGTTCGTGTAGC+TGG | + | tig0035778:20387-20406 | None:intergenic | 40.0% |
| AACAGAAGATTGGCAACTCA+AGG | - | tig0035778:20496-20515 | Msa1455400:intron | 40.0% | |
| AAGATTGGCAACTCAAGGAA+AGG | - | tig0035778:20501-20520 | Msa1455400:intron | 40.0% | |
| AGATTGGCAACTCAAGGAAA+GGG | - | tig0035778:20502-20521 | Msa1455400:intron | 40.0% | |
| ACTACGCAATTTGAGTGTGA+AGG | - | tig0035778:20628-20647 | Msa1455400:CDS | 40.0% | |
| ! | TTAGCTTGAACTCCTTCACT+TGG | + | tig0035778:20673-20692 | None:intergenic | 40.0% |
| GTGAAGGAGTTCAAGCTAAA+AGG | - | tig0035778:20674-20693 | Msa1455400:CDS | 40.0% | |
| GGATCTAAGTTTGTCTCGTT+GGG | - | tig0035778:20836-20855 | Msa1455400:five_prime_UTR | 40.0% | |
| TTCTTCTACCTTGTCTTCGG+TGG | - | tig0035778:16129-16148 | Msa1455400:three_prime_UTR | 45.0% | |
| GTATGGCTATAGCTGGTGAT+TGG | - | tig0035778:16991-17010 | Msa1455400:intron | 45.0% | |
| GGATATGGAAAAGGGGAGAT+CGG | - | tig0035778:17053-17072 | Msa1455400:intron | 45.0% | |
| ATCGGACAACTCTTCATTGC+TGG | - | tig0035778:17071-17090 | Msa1455400:intron | 45.0% | |
| AAGTCACACAAGCTCTCTTC+CGG | + | tig0035778:17245-17264 | None:intergenic | 45.0% | |
| TTGATGTTGGGCCGTATCTT+GGG | - | tig0035778:17321-17340 | Msa1455400:CDS | 45.0% | |
| GCTAGTTGCTGAGCATTTCA+AGG | - | tig0035778:17386-17405 | Msa1455400:CDS | 45.0% | |
| AGTACCACGAGGAGAAAAGT+AGG | - | tig0035778:17581-17600 | Msa1455400:intron | 45.0% | |
| !! | ACAACCTACTTTTCTCCTCG+TGG | + | tig0035778:17588-17607 | None:intergenic | 45.0% |
| ! | AGTCACTGAGGCATGGTTTT+TGG | - | tig0035778:17892-17911 | Msa1455400:intron | 45.0% |
| GCAGAGGCAATACAGTTTGA+TGG | - | tig0035778:18027-18046 | Msa1455400:intron | 45.0% | |
| TCAACGTGTTCCTGCAAACT+AGG | - | tig0035778:18172-18191 | Msa1455400:CDS | 45.0% | |
| ! | CCCCGGAAATCAACATCTTT+TGG | + | tig0035778:18204-18223 | None:intergenic | 45.0% |
| ! | GCCATATTTTCTGGGCTGTT+TGG | - | tig0035778:18500-18519 | Msa1455400:intron | 45.0% |
| ! | AGAGCTTGCTTGCCCAATTT+AGG | - | tig0035778:18654-18673 | Msa1455400:intron | 45.0% |
| ! | GAGCTTGCTTGCCCAATTTA+GGG | - | tig0035778:18655-18674 | Msa1455400:intron | 45.0% |
| ! | AGCTTGCTTGCCCAATTTAG+GGG | - | tig0035778:18656-18675 | Msa1455400:intron | 45.0% |
| GCCATACAGTCTCTCTTTGA+AGG | - | tig0035778:18999-19018 | Msa1455400:intron | 45.0% | |
| AGGAGTCCATAGGAACACAA+AGG | + | tig0035778:19036-19055 | None:intergenic | 45.0% | |
| GGGGGATCTCTTCATCATTT+GGG | + | tig0035778:19067-19086 | None:intergenic | 45.0% | |
| TGGGGGATCTCTTCATCATT+TGG | + | tig0035778:19068-19087 | None:intergenic | 45.0% | |
| AATGATGAAGAGATCCCCCA+TGG | - | tig0035778:19068-19087 | Msa1455400:intron | 45.0% | |
| ! | CTCGCTTGCATCTAAGTTGA+TGG | - | tig0035778:19133-19152 | Msa1455400:intron | 45.0% |
| GCAGTTCCTACTAAAGCAAC+AGG | - | tig0035778:19347-19366 | Msa1455400:intron | 45.0% | |
| GTTCCTACTAAAGCAACAGG+TGG | - | tig0035778:19350-19369 | Msa1455400:intron | 45.0% | |
| AATACATTCCTGAGGAAGCC+AGG | - | tig0035778:19471-19490 | Msa1455400:CDS | 45.0% | |
| ! | AAAGTTCATGATGGTGCTCC+TGG | + | tig0035778:19492-19511 | None:intergenic | 45.0% |
| CATAGTGTGAGGGTCTTACT+TGG | + | tig0035778:19991-20010 | None:intergenic | 45.0% | |
| ! | CTACACAAAGCCAAAGGTGT+AGG | + | tig0035778:20136-20155 | None:intergenic | 45.0% |
| AGATCTCTGATACTGCAGCA+AGG | - | tig0035778:20202-20221 | Msa1455400:intron | 45.0% | |
| AGCTAGATGATTGCCCACTT+TGG | - | tig0035778:20239-20258 | Msa1455400:intron | 45.0% | |
| GCATGCCCAATTAACCAAAG+TGG | + | tig0035778:20256-20275 | None:intergenic | 45.0% | |
| CTTGCCCTGCCTATATTATC+TGG | - | tig0035778:20326-20345 | Msa1455400:intron | 45.0% | |
| !! | CAGATTCAATGGCTCTGACT+CGG | + | tig0035778:20531-20550 | None:intergenic | 45.0% |
| AACTCCTTCACTTGGTTGGT+GGG | + | tig0035778:20665-20684 | None:intergenic | 45.0% | |
| CTTGAACTCCTTCACTTGGT+TGG | + | tig0035778:20669-20688 | None:intergenic | 45.0% | |
| !! | ATGTCAATTCTTTTGGGGGG+CGG | - | tig0035778:20814-20833 | Msa1455400:five_prime_UTR | 45.0% |
| GGGATCTAAGTTTGTCTCGT+TGG | - | tig0035778:20835-20854 | Msa1455400:five_prime_UTR | 45.0% | |
| GAGAGAGAGAAGGGTGAAGA+AGG | + | tig0035778:15977-15996 | None:intergenic | 50.0% | |
| TTCATACCACTCGTGTCTCG+TGG | - | tig0035778:16008-16027 | Msa1455400:three_prime_UTR | 50.0% | |
| ACACACTCTGCAAGAGAGAC+TGG | - | tig0035778:16054-16073 | Msa1455400:three_prime_UTR | 50.0% | |
| CACACTCTGCAAGAGAGACT+GGG | - | tig0035778:16055-16074 | Msa1455400:three_prime_UTR | 50.0% | |
| CTCGAGAACAGCAACAACAG+CGG | + | tig0035778:16160-16179 | None:intergenic | 50.0% | |
| GGTGATGCAGCTTGCAATGT+AGG | + | tig0035778:17277-17296 | None:intergenic | 50.0% | |
| CTTGATGTTGGGCCGTATCT+TGG | - | tig0035778:17320-17339 | Msa1455400:CDS | 50.0% | |
| TGGCAATGCCACCCAAGATA+CGG | + | tig0035778:17335-17354 | None:intergenic | 50.0% | |
| GCCCCTCTGATAGATTCATG+TGG | + | tig0035778:18417-18436 | None:intergenic | 50.0% | |
| ! | AGAGGGGCTTTGATCAGCAA+TGG | - | tig0035778:18429-18448 | Msa1455400:intron | 50.0% |
| !! | TACATTGGCTCTTGGACCAG+TGG | - | tig0035778:18538-18557 | Msa1455400:intron | 50.0% |
| AAACCTGCAGCAGCGTCAAA+GGG | + | tig0035778:18566-18585 | None:intergenic | 50.0% | |
| AAAACCTGCAGCAGCGTCAA+AGG | + | tig0035778:18567-18586 | None:intergenic | 50.0% | |
| AATCTACCTAACGAGTGGGC+TGG | - | tig0035778:18793-18812 | Msa1455400:intron | 50.0% | |
| GGCTTAATGCAGGAGTCCAT+AGG | + | tig0035778:19046-19065 | None:intergenic | 50.0% | |
| TCTGCATGTAGCTCTCCACA+CGG | + | tig0035778:19172-19191 | None:intergenic | 50.0% | |
| ! | TGGGTGGAGGGAGAGTATAT+TGG | + | tig0035778:19258-19277 | None:intergenic | 50.0% |
| TATACTCTCCCTCCACCCAT+TGG | - | tig0035778:19259-19278 | Msa1455400:intron | 50.0% | |
| TCACAGTACCAATGGGTGGA+GGG | + | tig0035778:19270-19289 | None:intergenic | 50.0% | |
| ATCACAGTACCAATGGGTGG+AGG | + | tig0035778:19271-19290 | None:intergenic | 50.0% | |
| !! | CCACCACCTGTTGCTTTAGT+AGG | + | tig0035778:19356-19375 | None:intergenic | 50.0% |
| CCTACTAAAGCAACAGGTGG+TGG | - | tig0035778:19353-19372 | Msa1455400:intron | 50.0% | |
| ACCCAAAAGCTGAATGCACC+CGG | + | tig0035778:19390-19409 | None:intergenic | 50.0% | |
| GAACTCCTTCACTTGGTTGG+TGG | + | tig0035778:20666-20685 | None:intergenic | 50.0% | |
| !! | TGTCAATTCTTTTGGGGGGC+GGG | - | tig0035778:20815-20834 | Msa1455400:five_prime_UTR | 50.0% |
| ATCAGCTACGACGAGTGCGT+TGG | + | tig0035778:15924-15943 | None:intergenic | 55.0% | |
| ATGGTACCACGAGACACGAG+TGG | + | tig0035778:16017-16036 | None:intergenic | 55.0% | |
| CGGCTAATCCACCGAAGACA+AGG | + | tig0035778:16140-16159 | None:intergenic | 55.0% | |
| ATGTTGGGCCGTATCTTGGG+TGG | - | tig0035778:17324-17343 | Msa1455400:CDS | 55.0% | |
| ! | GTGGTGTAGTGGAGTCACTG+AGG | - | tig0035778:17880-17899 | Msa1455400:intron | 55.0% |
| ! | GTAGTGGAGTCACTGAGGCA+TGG | - | tig0035778:17885-17904 | Msa1455400:intron | 55.0% |
| AACCTGCAGCAGCGTCAAAG+GGG | + | tig0035778:18565-18584 | None:intergenic | 55.0% | |
| !! | TGCCCAATTTAGGGGTGCTG+CGG | - | tig0035778:18664-18683 | Msa1455400:intron | 55.0% |
| CACCGCAGCACCCCTAAATT+GGG | + | tig0035778:18669-18688 | None:intergenic | 55.0% | |
| TAATGGCCAGCCCACTCGTT+AGG | + | tig0035778:18802-18821 | None:intergenic | 55.0% | |
| GGCTCGTTCATCATTCCGTG+TGG | - | tig0035778:19154-19173 | Msa1455400:intron | 55.0% | |
| ! | GCCGGGTGCATTCAGCTTTT+GGG | - | tig0035778:19386-19405 | Msa1455400:intron | 55.0% |
| AAGGCGACTGCTCGTGATTG+CGG | - | tig0035778:19960-19979 | Msa1455400:intron | 55.0% | |
| ACCTGCAGCAGCGTCAAAGG+GGG | + | tig0035778:18564-18583 | None:intergenic | 60.0% | |
| CCACCGCAGCACCCCTAAAT+TGG | + | tig0035778:18670-18689 | None:intergenic | 60.0% | |
| !! | CCAATTTAGGGGTGCTGCGG+TGG | - | tig0035778:18667-18686 | Msa1455400:intron | 60.0% |
| ! | GGTGGTGGTCTCTCATTCGC+CGG | - | tig0035778:19368-19387 | Msa1455400:intron | 60.0% |
| GTGGTGGTCTCTCATTCGCC+GGG | - | tig0035778:19369-19388 | Msa1455400:intron | 60.0% | |
| ! | CGCCGGGTGCATTCAGCTTT+TGG | - | tig0035778:19385-19404 | Msa1455400:intron | 60.0% |
| ATGGTGCTCCTGGCTTCCTC+AGG | + | tig0035778:19482-19501 | None:intergenic | 60.0% | |
| GGTGCCCACCAACCAAGTGA+AGG | - | tig0035778:20658-20677 | Msa1455400:CDS | 60.0% | |
| GCTGCGGTGGCCATTGCTTC+TGG | - | tig0035778:18680-18699 | Msa1455400:intron | 65.0% | |
| GCAGCGTCAAAGGGGGCCAC+TGG | + | tig0035778:18557-18576 | None:intergenic | 70.0% | |
| GCCCCCTTTGACGCTGCTGC+AGG | - | tig0035778:18560-18579 | Msa1455400:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0035778 | gene | 15836 | 20992 | 15836 | ID=Msa1455400;Name=Msa1455400 |
| tig0035778 | mRNA | 15836 | 20992 | 15836 | ID=Msa1455400-mRNA-1;Parent=Msa1455400;Name=Msa1455400-mRNA-1;_AED=0.07;_eAED=0.07;_QI=284|1|1|1|1|1|8|439|459 |
| tig0035778 | exon | 15836 | 16333 | 15836 | ID=Msa1455400-mRNA-1:exon:20247;Parent=Msa1455400-mRNA-1 |
| tig0035778 | exon | 16837 | 16939 | 16837 | ID=Msa1455400-mRNA-1:exon:20246;Parent=Msa1455400-mRNA-1 |
| tig0035778 | exon | 17272 | 17487 | 17272 | ID=Msa1455400-mRNA-1:exon:20245;Parent=Msa1455400-mRNA-1 |
| tig0035778 | exon | 17587 | 17852 | 17587 | ID=Msa1455400-mRNA-1:exon:20244;Parent=Msa1455400-mRNA-1 |
| tig0035778 | exon | 18127 | 18397 | 18127 | ID=Msa1455400-mRNA-1:exon:20243;Parent=Msa1455400-mRNA-1 |
| tig0035778 | exon | 19421 | 19589 | 19421 | ID=Msa1455400-mRNA-1:exon:20242;Parent=Msa1455400-mRNA-1 |
| tig0035778 | exon | 19681 | 19825 | 19681 | ID=Msa1455400-mRNA-1:exon:20241;Parent=Msa1455400-mRNA-1 |
| tig0035778 | exon | 20558 | 20992 | 20558 | ID=Msa1455400-mRNA-1:exon:20240;Parent=Msa1455400-mRNA-1 |
| tig0035778 | five_prime_UTR | 20709 | 20992 | 20709 | ID=Msa1455400-mRNA-1:five_prime_utr;Parent=Msa1455400-mRNA-1 |
| tig0035778 | CDS | 20558 | 20708 | 20558 | ID=Msa1455400-mRNA-1:cds;Parent=Msa1455400-mRNA-1 |
| tig0035778 | CDS | 19681 | 19825 | 19681 | ID=Msa1455400-mRNA-1:cds;Parent=Msa1455400-mRNA-1 |
| tig0035778 | CDS | 19421 | 19589 | 19421 | ID=Msa1455400-mRNA-1:cds;Parent=Msa1455400-mRNA-1 |
| tig0035778 | CDS | 18127 | 18397 | 18127 | ID=Msa1455400-mRNA-1:cds;Parent=Msa1455400-mRNA-1 |
| tig0035778 | CDS | 17587 | 17852 | 17587 | ID=Msa1455400-mRNA-1:cds;Parent=Msa1455400-mRNA-1 |
| tig0035778 | CDS | 17272 | 17487 | 17272 | ID=Msa1455400-mRNA-1:cds;Parent=Msa1455400-mRNA-1 |
| tig0035778 | CDS | 16837 | 16939 | 16837 | ID=Msa1455400-mRNA-1:cds;Parent=Msa1455400-mRNA-1 |
| tig0035778 | CDS | 16275 | 16333 | 16275 | ID=Msa1455400-mRNA-1:cds;Parent=Msa1455400-mRNA-1 |
| tig0035778 | three_prime_UTR | 15836 | 16274 | 15836 | ID=Msa1455400-mRNA-1:three_prime_utr;Parent=Msa1455400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
