AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0109890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109890 MtrunA17_Chr1g0167381 98.722 626 8 0 1 626 1 626 0.0 1294
Msa0109890 MtrunA17_Chr1g0187601 82.372 624 109 1 1 624 1 623 0.0 1061
Msa0109890 MtrunA17_Chr1g0183721 68.590 624 162 5 1 622 1 592 0.0 923
Msa0109890 MtrunA17_Chr1g0159741 46.004 513 253 10 92 594 141 639 7.19e-162 478
Msa0109890 MtrunA17_Chr3g0112341 44.847 524 270 7 72 588 133 644 1.43e-161 478
Msa0109890 MtrunA17_Chr1g0171781 45.714 525 273 6 94 615 88 603 2.24e-158 468
Msa0109890 MtrunA17_Chr5g0435751 44.269 506 243 7 90 588 123 596 7.50e-157 464
Msa0109890 MtrunA17_Chr8g0388881 45.203 542 264 12 90 615 96 620 4.20e-156 462
Msa0109890 MtrunA17_Chr3g0130381 43.023 602 293 18 41 624 218 787 1.41e-152 459
Msa0109890 MtrunA17_Chr1g0203741 44.790 547 260 14 91 615 91 617 5.04e-152 452
Msa0109890 MtrunA17_Chr7g0246701 44.898 539 266 12 93 615 102 625 1.04e-150 449
Msa0109890 MtrunA17_Chr8g0361791 39.870 617 320 14 18 617 20 602 6.64e-150 446
Msa0109890 MtrunA17_Chr5g0437501 45.291 499 250 9 101 587 101 588 1.29e-149 446
Msa0109890 MtrunA17_Chr4g0055031 42.491 546 274 12 90 618 84 606 1.12e-148 443
Msa0109890 MtrunA17_Chr8g0350391 42.357 543 277 11 92 615 105 630 4.99e-148 442
Msa0109890 MtrunA17_Chr3g0125511 45.149 536 257 16 100 619 232 746 6.96e-148 446
Msa0109890 MtrunA17_Chr7g0246681 40.493 568 309 9 55 615 42 587 8.15e-148 440
Msa0109890 MtrunA17_Chr6g0472571 42.202 545 281 12 92 620 105 631 3.03e-147 440
Msa0109890 MtrunA17_Chr5g0416991 39.937 636 328 15 1 617 1 601 6.82e-147 438
Msa0109890 MtrunA17_Chr8g0384431 45.437 504 248 12 101 590 298 788 4.01e-146 443
Msa0109890 MtrunA17_Chr8g0350351 41.210 529 284 8 95 615 91 600 5.77e-146 436
Msa0109890 MtrunA17_Chr8g0369481 40.331 543 287 9 92 618 70 591 3.01e-143 429
Msa0109890 MtrunA17_Chr5g0409411 38.179 626 329 11 10 620 13 595 1.79e-141 424
Msa0109890 MtrunA17_Chr8g0372471 44.289 499 254 10 100 588 386 870 9.54e-141 431
Msa0109890 MtrunA17_Chr3g0113981 44.106 492 255 9 101 587 175 651 1.62e-138 419
Msa0109890 MtrunA17_Chr3g0092501 40.375 587 302 14 14 587 21 572 2.27e-138 416
Msa0109890 MtrunA17_Chr7g0214551 41.756 558 292 15 74 611 23 567 1.83e-136 410
Msa0109890 MtrunA17_Chr5g0426281 36.545 550 302 12 90 615 144 670 1.69e-116 362
Msa0109890 MtrunA17_Chr3g0115931 36.754 536 306 11 90 601 152 678 1.73e-115 360
Msa0109890 MtrunA17_Chr1g0155141 34.828 580 325 15 55 615 154 699 5.01e-105 333
Msa0109890 MtrunA17_Chr5g0404771 50.391 256 111 5 100 354 328 568 5.78e-80 263
Msa0109890 MtrunA17_Chr5g0404761 40.996 261 133 9 342 588 1 254 2.96e-58 197
Msa0109890 MtrunA17_Chr4g0043121 31.765 340 215 6 90 418 84 417 4.18e-57 198
Msa0109890 MtrunA17_Chr4g0043131 42.775 173 81 3 446 601 2 173 1.14e-39 143
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0109890 AT1G04430.1 75.238 630 142 5 1 624 1 622 0.0 1014
Msa0109890 AT1G04430.3 75.238 630 142 5 1 624 1 622 0.0 1014
Msa0109890 AT1G04430.2 75.238 630 142 5 1 624 1 622 0.0 1014
Msa0109890 AT3G23300.2 74.718 621 144 3 3 623 2 609 0.0 981
Msa0109890 AT3G23300.1 74.718 621 144 3 3 623 2 609 0.0 981
Msa0109890 AT4G14360.1 74.557 621 142 4 3 623 2 606 0.0 957
Msa0109890 AT4G14360.2 74.557 621 142 4 3 623 2 606 0.0 957
Msa0109890 AT5G14430.1 60.165 605 226 3 12 615 14 604 0.0 763
Msa0109890 AT5G14430.2 59.669 605 229 3 12 615 14 604 0.0 757
Msa0109890 AT5G06050.1 43.672 561 291 10 35 587 96 639 3.86e-167 493
Msa0109890 AT2G39750.1 46.535 505 251 8 90 587 175 667 5.79e-165 488
Msa0109890 AT1G77260.1 45.908 501 250 8 94 587 145 631 1.94e-164 485
Msa0109890 AT3G10200.1 45.028 533 279 7 87 615 66 588 2.46e-161 475
Msa0109890 AT5G04060.1 44.656 524 277 7 94 615 85 597 8.12e-158 466
Msa0109890 AT1G33170.1 45.631 515 252 10 90 588 108 610 3.09e-156 464
Msa0109890 AT4G10440.1 45.631 515 251 11 90 588 91 592 2.38e-155 461
Msa0109890 AT3G51070.1 45.122 574 275 16 32 588 319 869 1.35e-153 465
Msa0109890 AT2G45750.1 45.648 517 251 9 91 588 86 591 2.02e-153 456
Msa0109890 AT3G10200.2 47.292 480 241 6 87 562 66 537 7.66e-152 451
Msa0109890 AT2G34300.2 44.898 539 262 15 101 624 250 768 1.79e-149 451
Msa0109890 AT2G34300.3 44.898 539 262 15 101 624 250 768 1.79e-149 451
Msa0109890 AT2G34300.1 44.898 539 262 15 101 624 250 768 1.79e-149 451
Msa0109890 AT1G29470.1 45.591 533 257 15 101 620 250 762 3.65e-149 450
Msa0109890 AT1G29470.2 45.591 533 257 15 101 620 250 762 3.65e-149 450
Msa0109890 AT4G19120.1 37.942 622 328 10 11 620 20 595 4.79e-149 444
Msa0109890 AT4G19120.2 37.942 622 328 10 11 620 20 595 4.79e-149 444
Msa0109890 AT5G64030.1 42.933 566 286 15 70 619 276 820 2.17e-147 447
Msa0109890 AT1G26850.2 39.688 640 327 17 4 620 10 613 1.78e-146 438
Msa0109890 AT1G26850.1 39.688 640 327 17 4 620 10 613 1.78e-146 438
Msa0109890 AT4G00750.1 42.251 542 280 12 92 615 96 622 1.37e-143 431
Msa0109890 AT4G00740.1 38.742 604 327 13 21 615 24 593 3.94e-142 426
Msa0109890 AT4G00740.2 38.742 604 327 13 21 615 24 593 3.94e-142 426
Msa0109890 AT3G51070.2 45.386 531 251 15 32 545 319 827 6.28e-141 431
Msa0109890 AT1G31850.1 39.338 544 295 10 91 618 75 599 1.06e-140 422
Msa0109890 AT1G31850.2 39.338 544 295 10 91 618 75 599 1.06e-140 422
Msa0109890 AT1G31850.4 39.338 544 295 10 91 618 75 599 1.06e-140 422
Msa0109890 AT1G31850.3 39.338 544 295 10 91 618 75 599 1.06e-140 422
Msa0109890 AT2G43200.2 43.340 533 268 14 92 607 91 606 7.41e-138 416
Msa0109890 AT2G43200.1 43.340 533 268 14 92 607 91 606 7.41e-138 416
Msa0109890 AT2G40280.1 44.016 493 252 12 101 587 90 564 3.93e-137 413
Msa0109890 AT4G18030.1 40.255 549 289 12 86 617 79 605 1.16e-134 408
Msa0109890 AT3G56080.1 43.232 495 256 11 101 587 114 591 1.66e-134 407
Msa0109890 AT3G56080.2 44.812 453 226 10 101 545 114 550 3.14e-126 384
Msa0109890 AT4G19120.3 38.004 521 270 8 11 519 20 499 6.67e-121 368
Msa0109890 AT1G78240.1 34.944 538 308 11 90 598 144 668 2.15e-112 352
Msa0109890 AT1G78240.2 34.944 538 308 11 90 598 144 668 2.15e-112 352
Msa0109890 AT1G26850.3 39.181 513 264 13 4 497 10 493 2.45e-111 343
Msa0109890 AT1G13860.4 33.993 556 302 11 90 614 79 600 1.03e-107 337
Msa0109890 AT1G13860.3 33.993 556 302 11 90 614 79 600 1.03e-107 337
Msa0109890 AT1G13860.1 33.993 556 302 11 90 614 79 600 1.03e-107 337
Msa0109890 AT1G13860.5 33.993 556 302 11 90 614 79 600 1.03e-107 337
Msa0109890 AT1G19430.1 36.822 535 296 14 91 615 220 722 2.68e-105 335
Msa0109890 AT1G19430.3 36.822 535 296 14 91 615 220 722 2.68e-105 335
Msa0109890 AT2G03480.2 35.075 536 288 10 90 601 84 583 1.64e-103 326
Msa0109890 AT2G03480.1 34.637 537 300 11 90 601 84 594 1.62e-98 313
Msa0109890 AT1G13860.2 35.853 463 250 9 180 614 1 444 1.04e-94 298
Msa0109890 AT1G19430.2 34.414 401 228 12 91 481 220 595 7.44e-62 216
Msa0109890 AT2G03480.3 33.550 307 192 4 90 389 84 385 3.73e-55 194

Find 188 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACTTGGGGCATCGTATT+TGG 0.136099 1_3:-21968626 Msa0109890:CDS
CATTATTCTGCCCTTCAATT+TGG 0.143921 1_3:-21964540 Msa0109890:three_prime_UTR
GGCTGTGGTGTTGCAAGTTT+TGG 0.191581 1_3:-21966949 Msa0109890:CDS
CTGCTCTGTGGCCACTTAAT+AGG 0.250527 1_3:+21967690 None:intergenic
ATTGTTAAATTTCCTTCTTT+TGG 0.255928 1_3:-21964642 Msa0109890:three_prime_UTR
ATGAATGTTGTTCCACCTTA+TGG 0.267552 1_3:-21965414 Msa0109890:CDS
TGCAGTTTGGGGAGTGAATA+TGG 0.280958 1_3:-21966467 Msa0109890:CDS
TAAGTAAGTGTTTGTTTGTT+TGG 0.296374 1_3:+21969990 None:intergenic
CTCTGTCGAATACAATTCTA+AGG 0.298104 1_3:+21965382 None:intergenic
CATCACATGGCCATTAGTTC+TGG 0.306050 1_3:-21964715 Msa0109890:three_prime_UTR
TTCACTCCCCAAACTGCATC+TGG 0.308256 1_3:+21966472 None:intergenic
TTGAGCTTGACCGTGTTCTT+AGG 0.311608 1_3:-21966714 Msa0109890:CDS
CGTTTAGTTGCTTCCGTTTG+TGG 0.312759 1_3:-21968748 Msa0109890:CDS
TAGTGAGCCACAATTTCTTC+TGG 0.318396 1_3:+21964860 None:intergenic
TGCTAGTTCAGGTTGTGTTT+TGG 0.331539 1_3:-21968922 Msa0109890:five_prime_UTR
TCGTCCTGAGCATATGCTTC+TGG 0.332248 1_3:+21966664 None:intergenic
GGTTCATCTACAGCTGAATA+TGG 0.335574 1_3:-21968661 Msa0109890:CDS
ATTATTCTGCCCTTCAATTT+GGG 0.336684 1_3:-21964539 Msa0109890:three_prime_UTR
CTCTTAAAGACAAAGATGTT+TGG 0.339388 1_3:-21965440 Msa0109890:CDS
AAATAATTTCATTGCCATCT+TGG 0.345100 1_3:+21964890 None:intergenic
ATATCTTTCACCTTGTATCC+TGG 0.347634 1_3:+21967797 None:intergenic
GAAGAGAGAGAAGTGAGATT+TGG 0.347717 1_3:+21969942 None:intergenic
TGACGACCCAGATGCAGTTT+GGG 0.348581 1_3:-21966479 Msa0109890:CDS
ATGACGACCCAGATGCAGTT+TGG 0.353594 1_3:-21966480 Msa0109890:CDS
AGACTTGGGGCATCGTATTT+GGG 0.362411 1_3:-21968625 Msa0109890:CDS
TGTGGTGTGGCACTCTTTCT+CGG 0.362412 1_3:-21968730 Msa0109890:CDS
TCAAATATATTACACACTTT+AGG 0.364075 1_3:-21968986 Msa0109890:five_prime_UTR
CACATAGTAGATTGTCTTTG+TGG 0.366810 1_3:-21964489 Msa0109890:three_prime_UTR
CTTTCACAACCATCCAGTTC+TGG 0.370022 1_3:+21967610 None:intergenic
CCTGCATATCTTGGTGTCTT+GGG 0.373580 1_3:-21966832 Msa0109890:CDS
CAGGTTATTTATTAAGCCTT+AGG 0.374298 1_3:-21964585 Msa0109890:three_prime_UTR
AAGAGAAGTCCGACCAGAAC+TGG 0.375125 1_3:-21967623 Msa0109890:CDS
TACACACTTTAGGAAGAATC+TGG 0.384059 1_3:-21968976 Msa0109890:five_prime_UTR
ATCCCTGATGATTATGAAAC+CGG 0.384290 1_3:+21965002 None:intergenic
CTCTTTGAAGCCAGTCAATT+CGG 0.384506 1_3:+21966752 None:intergenic
CCTTAGGGATGCAGCAGAAT+AGG 0.386264 1_3:-21964830 Msa0109890:exon
ACGAAGAGGATTTGAGGATA+TGG 0.387587 1_3:-21966645 Msa0109890:CDS
AATATTGTGGTTGCTAGTTC+AGG 0.388415 1_3:-21968933 Msa0109890:five_prime_UTR
GTCATATGTTACAGGAACTT+TGG 0.392510 1_3:-21965569 Msa0109890:intron
ATCTTTGGTGGTCAAAATAG+TGG 0.394278 1_3:-21968682 Msa0109890:CDS
TCTTAAAGACAAAGATGTTT+GGG 0.394931 1_3:-21965439 Msa0109890:CDS
ATTCAATTTGCTTTAGAAAG+AGG 0.398168 1_3:-21966859 Msa0109890:CDS
TTCGTTGTTAAGATTATTGT+CGG 0.399186 1_3:+21966999 None:intergenic
TCTCACGAATGATTGCTATA+TGG 0.401558 1_3:-21966542 Msa0109890:CDS
GTGTTCCAAGGATCCATCTT+TGG 0.406730 1_3:-21968697 Msa0109890:CDS
CATGGAGTAAATCATATGTT+CGG 0.408869 1_3:+21965109 None:intergenic
GAGTGTGAAGAAGGTATTAT+CGG 0.414320 1_3:+21969964 None:intergenic
TATCTTTCACCTTGTATCCT+GGG 0.419086 1_3:+21967798 None:intergenic
AATGGATATGAAAGCAAACT+TGG 0.422751 1_3:-21965478 Msa0109890:CDS
GTTCTCGTTGCCGAATTGAC+TGG 0.424178 1_3:-21966762 Msa0109890:CDS
TCCTGCATATCTTGGTGTCT+TGG 0.425287 1_3:-21966833 Msa0109890:CDS
ATTACTTGAGATGGACCGTT+TGG 0.428941 1_3:-21965034 Msa0109890:CDS
GTTTCTGCCAGATGACAGTT+TGG 0.429134 1_3:+21966566 None:intergenic
CTACCGGTTTCATAATCATC+AGG 0.429510 1_3:-21965005 Msa0109890:CDS
GTATTCGACAGAGGACTCAT+AGG 0.430881 1_3:-21965372 Msa0109890:CDS
GGCTCACTACTGAAAGCCTT+AGG 0.436251 1_3:-21964846 Msa0109890:CDS
TGAGATTTGGAGTGTGAAGA+AGG 0.449553 1_3:+21969955 None:intergenic
TTGAGATGGACCGTTTGGTT+AGG 0.449740 1_3:-21965029 Msa0109890:CDS
CTATTAAGTGGCCACAGAGC+AGG 0.451293 1_3:-21967689 Msa0109890:CDS
CTGCGAACTGTTCTTGATGT+TGG 0.451569 1_3:-21966970 Msa0109890:CDS
TATACTGCTTCCAGAACTAA+TGG 0.458321 1_3:+21964705 None:intergenic
CTAAGGGTGCTTGGTCCATA+AGG 0.458649 1_3:+21965399 None:intergenic
GACCGTTTGGTTAGGCCTAC+CGG 0.460269 1_3:-21965021 Msa0109890:CDS
GACCACCAAAGATGGATCCT+TGG 0.460777 1_3:+21968692 None:intergenic
AAAGAGTGCCACACCACAAA+CGG 0.461307 1_3:+21968735 None:intergenic
TCAAAAGATCTACTTGGGTA+AGG 0.465647 1_3:+21966796 None:intergenic
CATTCTTATGATCATAATGC+AGG 0.468042 1_3:-21964604 Msa0109890:three_prime_UTR
CTTAGGCCTAATGTTTCCAT+TGG 0.468494 1_3:-21964568 Msa0109890:three_prime_UTR
AGAGGAATTCCTGCATATCT+TGG 0.469580 1_3:-21966841 Msa0109890:CDS
ATATATTCTCTGCTGTTACA+AGG 0.473769 1_3:-21964747 Msa0109890:three_prime_UTR
TTCAAGTGAAGTCTTCGAAA+AGG 0.475992 1_3:-21966007 Msa0109890:CDS
TGTTTCAGGTTCCTATTAAG+TGG 0.477852 1_3:-21967701 Msa0109890:intron
TGAATCTTCGAGTTTAGTGC+AGG 0.480655 1_3:-21968569 Msa0109890:CDS
AGTATCTAACAGCATTGCAT+TGG 0.483730 1_3:-21964951 Msa0109890:CDS
CAATTGTACCGCCTTTCTGC+AGG 0.485926 1_3:+21967836 None:intergenic
TTACATTATACCCAAATTGA+AGG 0.487165 1_3:+21964529 None:intergenic
ATCTTGGTCAGAGTCAGAAC+TGG 0.487386 1_3:+21964906 None:intergenic
TGAAAATGAGTCCCTCCTCC+AGG 0.489393 1_3:+21967570 None:intergenic
CCTATTCTGCTGCATCCCTA+AGG 0.490448 1_3:+21964830 None:intergenic
GAATATCCAATGGAAACATT+AGG 0.493543 1_3:+21964562 None:intergenic
AATTAGCTCCATGGCCTTCG+AGG 0.494253 1_3:-21966068 Msa0109890:CDS
AGAGAGACCAAACTGTCATC+TGG 0.495263 1_3:-21966573 Msa0109890:CDS
GGAAAATCGTTGAAAAGACT+TGG 0.495389 1_3:-21968640 Msa0109890:CDS
ATCTTTCACCTTGTATCCTG+GGG 0.496697 1_3:+21967799 None:intergenic
CTCAGGACGAAGAGGATTTG+AGG 0.497228 1_3:-21966651 Msa0109890:CDS
CTTGACCGTGTTCTTAGGCC+GGG 0.497854 1_3:-21966709 Msa0109890:CDS
AGAAGATCTATTACTTGAGA+TGG 0.498372 1_3:-21965043 Msa0109890:CDS
CACAGAGCAGGGAGGAGGTA+TGG 0.499092 1_3:-21967677 Msa0109890:CDS
ATGCCGAGGTCAGCTAATCT+AGG 0.500016 1_3:+21966030 None:intergenic
CAAAGAGGAGGACGAGTACC+AGG 0.502549 1_3:+21966511 None:intergenic
ATGTTGAAAGTAAGACAAAT+CGG 0.502644 1_3:+21968811 None:intergenic
GAACACTGTGAGGAACATAA+TGG 0.505031 1_3:-21965496 Msa0109890:CDS
GCAAGTTCAAAAGATCTACT+TGG 0.507002 1_3:+21966790 None:intergenic
CTATCAAATGAGACTGAAGC+TGG 0.508340 1_3:-21967897 Msa0109890:CDS
CCCAAGACACCAAGATATGC+AGG 0.508430 1_3:+21966832 None:intergenic
ATGTCGAGGGGCAGATCTGA+TGG 0.509198 1_3:-21968784 Msa0109890:CDS
GCTTGACCGTGTTCTTAGGC+CGG 0.510074 1_3:-21966710 Msa0109890:CDS
CAATGGAAACATTAGGCCTA+AGG 0.511975 1_3:+21964569 None:intergenic
GCTCACTACTGAAAGCCTTA+GGG 0.514660 1_3:-21964845 Msa0109890:CDS
AGGTACTCACGGTCAGAGTA+AGG 0.515202 1_3:+21966430 None:intergenic
GTATCTAACAGCATTGCATT+GGG 0.515914 1_3:-21964950 Msa0109890:CDS
TGATATCATTGCAATGTCCT+TGG 0.516178 1_3:-21966908 Msa0109890:CDS
GAAAATCGTTGAAAAGACTT+GGG 0.516801 1_3:-21968639 Msa0109890:CDS
AATCTTACAGGGAAACTCTT+CGG 0.522037 1_3:+21968520 None:intergenic
AACCGGTAGGCCTAACCAAA+CGG 0.524646 1_3:+21965019 None:intergenic
TGAGAATTACTGGAATCTCA+TGG 0.526486 1_3:-21965535 Msa0109890:CDS
ATCAGATGACAACAGAGCAC+AGG 0.526584 1_3:-21966097 Msa0109890:intron
ATGGAGTAAATCATATGTTC+GGG 0.528127 1_3:+21965110 None:intergenic
ATGAAATGAGAACCAAAAGA+AGG 0.530476 1_3:+21964630 None:intergenic
ACTGTTCTTGATGTTGGCTG+TGG 0.534011 1_3:-21966964 Msa0109890:CDS
CTGGTCAACCTCGAAGGCCA+TGG 0.535730 1_3:+21966060 None:intergenic
GTGGCCACAGAGCAGGGAGG+AGG 0.539572 1_3:-21967682 Msa0109890:CDS
TATTAAATTTGAAAATATTG+TGG 0.541718 1_3:-21968946 Msa0109890:five_prime_UTR
CTCTTGTCGGACGCATGTGT+TGG 0.541931 1_3:-21966609 Msa0109890:CDS
ACTTGGGTAAGGGAGTCTCT+TGG 0.542106 1_3:+21966807 None:intergenic
TTCCAAGGATCCATCTTTGG+TGG 0.542297 1_3:-21968694 Msa0109890:CDS
CAAAAGATCTACTTGGGTAA+GGG 0.547046 1_3:+21966797 None:intergenic
TTCTTAACAAAATCAATCAC+AGG 0.552088 1_3:+21964973 None:intergenic
ATGCACGTCATTGGGTGCCA+AGG 0.552467 1_3:+21966891 None:intergenic
CATCTGGGTCGTCATCAGAC+TGG 0.554682 1_3:+21966488 None:intergenic
CAAGTTCAAAAGATCTACTT+GGG 0.555994 1_3:+21966791 None:intergenic
GAAGCTGGATCTTTCTGTGA+TGG 0.556823 1_3:-21967882 Msa0109890:CDS
TTTCAACATATAAATGTCGA+GGG 0.556989 1_3:-21968797 Msa0109890:exon
TGCTATATGGAAAGAGAACC+TGG 0.558054 1_3:-21966529 Msa0109890:CDS
GTCTCCAGAAGCATATGCTC+AGG 0.559721 1_3:-21966668 Msa0109890:CDS
TTGTTATCCAGAAGAAATTG+TGG 0.559819 1_3:-21964867 Msa0109890:CDS
AATACAATTCTAAGGGTGCT+TGG 0.560490 1_3:+21965390 None:intergenic
ATTGACTGGCTTCAAAGAGA+TGG 0.561865 1_3:-21966748 Msa0109890:CDS
AGCTAATCTAGGAGGAGGAC+TGG 0.562398 1_3:+21966041 None:intergenic
CATATGATTTACTCCATGCA+TGG 0.564822 1_3:-21965104 Msa0109890:CDS
TATTAAGTGGCCACAGAGCA+GGG 0.564844 1_3:-21967688 Msa0109890:CDS
TACATTATACCCAAATTGAA+GGG 0.566049 1_3:+21964530 None:intergenic
AGAGAAATGAGTGCTCTTGT+CGG 0.566692 1_3:-21966622 Msa0109890:CDS
GACATTGCCCTCCTGCAGAA+AGG 0.567595 1_3:-21967847 Msa0109890:CDS
CTTTCAACATATAAATGTCG+AGG 0.569755 1_3:-21968798 Msa0109890:exon
GAGAATTACTGGAATCTCAT+GGG 0.573452 1_3:-21965534 Msa0109890:CDS
GCAGAATAATGAATATCCAA+TGG 0.576552 1_3:+21964552 None:intergenic
AGTTGCTTCCGTTTGTGGTG+TGG 0.577218 1_3:-21968743 Msa0109890:CDS
ATAATCTTAACAACGAAGGA+AGG 0.581153 1_3:-21966993 Msa0109890:CDS
TCACTCCCCAAACTGCATCT+GGG 0.584921 1_3:+21966473 None:intergenic
TAAGAACACGGTCAAGCTCA+AGG 0.587724 1_3:+21966716 None:intergenic
TCATAGGGACTACTCATGAC+TGG 0.590688 1_3:-21965356 Msa0109890:intron
AGTTCTGACTCTGACCAAGA+TGG 0.591131 1_3:-21964904 Msa0109890:CDS
AACCTCCCGGCCTAAGAACA+CGG 0.591632 1_3:+21966704 None:intergenic
CACAACCATCCAGTTCTGGT+CGG 0.594717 1_3:+21967614 None:intergenic
CCTCCTAGATTAGCTGACCT+CGG 0.596239 1_3:-21966033 Msa0109890:CDS
GAAAATGAGTCCCTCCTCCA+GGG 0.596929 1_3:+21967571 None:intergenic
TTGTACCGCCTTTCTGCAGG+AGG 0.598133 1_3:+21967839 None:intergenic
AGGGTGCTTGGTCCATAAGG+TGG 0.601824 1_3:+21965402 None:intergenic
ATATAGCAATCATTCGTGAG+AGG 0.609703 1_3:+21966544 None:intergenic
AGGTCAGCTAATCTAGGAGG+AGG 0.611600 1_3:+21966036 None:intergenic
TATTCGACAGAGGACTCATA+GGG 0.614481 1_3:-21965371 Msa0109890:CDS
GAGTAAGCAAAATAACCTCC+CGG 0.617833 1_3:+21966691 None:intergenic
GGAGGACTGGTCAACCTCGA+AGG 0.618418 1_3:+21966054 None:intergenic
GACAATAATCTTAACAACGA+AGG 0.621640 1_3:-21966997 Msa0109890:CDS
TTTAGTGCAGGGAGATACGT+TGG 0.622149 1_3:-21968557 Msa0109890:CDS
AGGAGAAAATCACAACTACA+TGG 0.624728 1_3:-21964810 Msa0109890:three_prime_UTR
ATGGATATGAAAGCAAACTT+GGG 0.628657 1_3:-21965477 Msa0109890:CDS
GAAGTCCGACCAGAACTGGA+TGG 0.636178 1_3:-21967619 Msa0109890:CDS
CATACCTCCTCCCTGCTCTG+TGG 0.637487 1_3:+21967678 None:intergenic
CTGATGATTATGAAACCGGT+AGG 0.638274 1_3:+21965006 None:intergenic
GACGACCCAGATGCAGTTTG+GGG 0.638692 1_3:-21966478 Msa0109890:CDS
AGCATATGCTCAGGACGAAG+AGG 0.639173 1_3:-21966659 Msa0109890:CDS
CTTAGAATTGTATTCGACAG+AGG 0.641862 1_3:-21965381 Msa0109890:CDS
TCATCAGACTGGCAAAGAGG+AGG 0.642219 1_3:+21966499 None:intergenic
AGACTTCACTTGAAATGCCG+AGG 0.643353 1_3:+21966016 None:intergenic
TCAGATGACAACAGAGCACA+GGG 0.647827 1_3:-21966096 Msa0109890:intron
TGTACCGCCTTTCTGCAGGA+GGG 0.650346 1_3:+21967840 None:intergenic
AGGGTAGTGAATTAGCTCCA+TGG 0.651252 1_3:-21966077 Msa0109890:CDS
TCTTTCACCTTGTATCCTGG+GGG 0.654168 1_3:+21967800 None:intergenic
GAATCTTCGAGTTTAGTGCA+GGG 0.654895 1_3:-21968568 Msa0109890:CDS
TACCGGTTTCATAATCATCA+GGG 0.654964 1_3:-21965004 Msa0109890:CDS
ACGGAATCAACTCTGAGTGA+CGG 0.659026 1_3:+21967939 None:intergenic
TCGTCATCAGACTGGCAAAG+AGG 0.659055 1_3:+21966496 None:intergenic
CCGAGGTCAGCTAATCTAGG+AGG 0.660326 1_3:+21966033 None:intergenic
TCTGTCGAATACAATTCTAA+GGG 0.660348 1_3:+21965383 None:intergenic
CAGAACTGGATGGTTGTGAA+AGG 0.663525 1_3:-21967609 Msa0109890:CDS
AAAATCGTTGAAAAGACTTG+GGG 0.671264 1_3:-21968638 Msa0109890:CDS
GGAGTAAATCATATGTTCGG+GGG 0.671504 1_3:+21965112 None:intergenic
AAATCTCATCGAACACTGTG+AGG 0.672324 1_3:-21965506 Msa0109890:CDS
ATAAGATGTCTGTCTAAACA+CGG 0.674016 1_3:+21967920 None:intergenic
GACCGTGTTCTTAGGCCGGG+AGG 0.680320 1_3:-21966706 Msa0109890:CDS
TGAAGTCTTCGAAAAGGACA+CGG 0.691182 1_3:-21966001 Msa0109890:intron
ATTGCCCTCCTGCAGAAAGG+CGG 0.694643 1_3:-21967844 Msa0109890:CDS
TTCAACATATAAATGTCGAG+GGG 0.701953 1_3:-21968796 Msa0109890:exon
AAGGAATTAACAGCATCACA+TGG 0.703586 1_3:-21964728 Msa0109890:three_prime_UTR
TGGAGTAAATCATATGTTCG+GGG 0.714419 1_3:+21965111 None:intergenic
TAAGTGGCCACAGAGCAGGG+AGG 0.775323 1_3:-21967685 Msa0109890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAATTTGAAAATATTG+TGG - chr1_3:21965451-21965470 Msa0109890:CDS 10.0%
!! TTAAAATCTTATCTATATAT+CGG - chr1_3:21966111-21966130 Msa0109890:intron 10.0%
!! AAAAAAAAACATGAAAATGA+AGG + chr1_3:21964622-21964641 None:intergenic 15.0%
!! ATTAATTGCATTTAATTATG+TGG - chr1_3:21964757-21964776 Msa0109890:three_prime_UTR 15.0%
!!! ATTTAAATTTTATACACTGT+CGG - chr1_3:21965112-21965131 Msa0109890:CDS 15.0%
!! TTAATTATGCAATTAAGAAT+CGG + chr1_3:21966296-21966315 None:intergenic 15.0%
!!! TTTTTATTTTGTTGTTTCTT+TGG - chr1_3:21966673-21966692 Msa0109890:CDS 15.0%
!! AAATAAAAAATCATGAGAAA+AGG + chr1_3:21967990-21968009 None:intergenic 15.0%
!! TAACTGAATAATATAGAAAA+AGG + chr1_3:21969179-21969198 None:intergenic 15.0%
!! TTTATTAGATGCTAATAATG+TGG - chr1_3:21964690-21964709 Msa0109890:three_prime_UTR 20.0%
!!! AGATTTTGTATCATTTTCAT+TGG - chr1_3:21964824-21964843 Msa0109890:exon 20.0%
!!! AATGTTTTACATTGTTAACA+AGG - chr1_3:21965140-21965159 Msa0109890:intron 20.0%
!!! ATATTTCTTTAAAGATCTGA+TGG - chr1_3:21965213-21965232 Msa0109890:intron 20.0%
!! TCAAATATATTACACACTTT+AGG - chr1_3:21965411-21965430 Msa0109890:CDS 20.0%
!!! ATTTTATCTCTTATCTCTTA+TGG - chr1_3:21966038-21966057 Msa0109890:CDS 20.0%
!!! ATATTTGCTAATGATATTCA+AGG + chr1_3:21966083-21966102 None:intergenic 20.0%
!! TTAATATTAACATCTAGTCT+CGG + chr1_3:21966627-21966646 None:intergenic 20.0%
!! AAATAAAAACGCTATTCAAT+AGG + chr1_3:21966662-21966681 None:intergenic 20.0%
!!! ATACATTCATACTTTTTACT+CGG - chr1_3:21967239-21967258 Msa0109890:intron 20.0%
!! TTATATATACTTCGATTTCA+TGG - chr1_3:21967320-21967339 Msa0109890:intron 20.0%
!! ATATAATATATAACACACCA+TGG + chr1_3:21968116-21968135 None:intergenic 20.0%
!! TTTCAAATAGTAACCATTAA+AGG + chr1_3:21968178-21968197 None:intergenic 20.0%
!! ATGAGATAATGAATAGTTAA+GGG + chr1_3:21968620-21968639 None:intergenic 20.0%
!! AATGAGATAATGAATAGTTA+AGG + chr1_3:21968621-21968640 None:intergenic 20.0%
!! AAAAAAGAATTGAGAATTAC+TGG - chr1_3:21968852-21968871 Msa0109890:five_prime_UTR 20.0%
!! AACTCTATAACTAAGTAAAA+GGG + chr1_3:21969138-21969157 None:intergenic 20.0%
!!! ATTGTTAAATTTCCTTCTTT+TGG - chr1_3:21969755-21969774 Msa0109890:intron 20.0%
! TTTGAGAAATGATGAAAAAG+AGG + chr1_3:21964372-21964391 None:intergenic 25.0%
! TAAGTAAGTGTTTGTTTGTT+TGG + chr1_3:21964410-21964429 None:intergenic 25.0%
!! TTTCTATCTTTTCTTTGATC+TGG - chr1_3:21964540-21964559 Msa0109890:three_prime_UTR 25.0%
!! ATGAATGTCAATTTTCTTGA+TGG - chr1_3:21964852-21964871 Msa0109890:CDS 25.0%
! GTAAAAATTCTTTACACAGA+CGG - chr1_3:21965254-21965273 Msa0109890:intron 25.0%
! ATGTTGAAAGTAAGACAAAT+CGG + chr1_3:21965589-21965608 None:intergenic 25.0%
! TTTCAACATATAAATGTCGA+GGG - chr1_3:21965600-21965619 Msa0109890:intron 25.0%
!! AATATAATACAAGAGGCATA+AGG + chr1_3:21965942-21965961 None:intergenic 25.0%
! TATATGTTCATGCATAAGTA+AGG - chr1_3:21966324-21966343 Msa0109890:intron 25.0%
! ATATGTTCATGCATAAGTAA+GGG - chr1_3:21966325-21966344 Msa0109890:intron 25.0%
! AATAGTGTATCACATAACAA+TGG + chr1_3:21967077-21967096 None:intergenic 25.0%
! TGTTATGTGATACACTATTT+AGG - chr1_3:21967078-21967097 Msa0109890:intron 25.0%
! TTGTCAAATAGCATCTATAA+CGG - chr1_3:21967109-21967128 Msa0109890:intron 25.0%
!!! TACATTCATACTTTTTACTC+GGG - chr1_3:21967240-21967259 Msa0109890:intron 25.0%
! TTCGTTGTTAAGATTATTGT+CGG + chr1_3:21967401-21967420 None:intergenic 25.0%
!!! ATTCAATTTGCTTTAGAAAG+AGG - chr1_3:21967538-21967557 Msa0109890:CDS 25.0%
!!! CATCTGATAAAAAAGTGTTT+AGG + chr1_3:21968288-21968307 None:intergenic 25.0%
! CAAATTAAAACAGTAACAGA+AGG + chr1_3:21968443-21968462 None:intergenic 25.0%
!!! CTTCTGTTACTGTTTTAATT+TGG - chr1_3:21968441-21968460 Msa0109890:intron 25.0%
! AAACGACAATTTAAAAGGAA+TGG + chr1_3:21968494-21968513 None:intergenic 25.0%
! CTTCAAAACGACAATTTAAA+AGG + chr1_3:21968499-21968518 None:intergenic 25.0%
!!! CTTTTAAATTGTCGTTTTGA+AGG - chr1_3:21968497-21968516 Msa0109890:intron 25.0%
! ACAAAGTTTATTCATTTCCT+TGG + chr1_3:21968536-21968555 None:intergenic 25.0%
! CTATGAAACGAAAGTTAAAA+AGG - chr1_3:21968750-21968769 Msa0109890:CDS 25.0%
! GAAAGTTAAAAAGGAATAGA+TGG - chr1_3:21968759-21968778 Msa0109890:CDS 25.0%
!! TAACTTTTGTCATATGTTAC+AGG - chr1_3:21968820-21968839 Msa0109890:five_prime_UTR 25.0%
! TCTTAAAGACAAAGATGTTT+GGG - chr1_3:21968958-21968977 Msa0109890:five_prime_UTR 25.0%
!! AAATTAGTTTCAGGAAATCA+AGG + chr1_3:21969074-21969093 None:intergenic 25.0%
!! AGATGCAATAAATTAGTTTC+AGG + chr1_3:21969083-21969102 None:intergenic 25.0%
! GAACTCTATAACTAAGTAAA+AGG + chr1_3:21969139-21969158 None:intergenic 25.0%
! AAATAGTATGATACTTGAGA+TGG - chr1_3:21969204-21969223 Msa0109890:intron 25.0%
! TTCTTAACAAAATCAATCAC+AGG + chr1_3:21969427-21969446 None:intergenic 25.0%
! AAATAATTTCATTGCCATCT+TGG + chr1_3:21969510-21969529 None:intergenic 25.0%
! TACATTATACCCAAATTGAA+GGG + chr1_3:21969870-21969889 None:intergenic 25.0%
! TTACATTATACCCAAATTGA+AGG + chr1_3:21969871-21969890 None:intergenic 25.0%
!! TACATGAATTTTATTCTGCT+TGG - chr1_3:21969969-21969988 Msa0109890:five_prime_UTR 25.0%
!! ATACATACATTTCTTTTGCT+TGG - chr1_3:21970045-21970064 Msa0109890:five_prime_UTR 25.0%
AGAGAAATGAAGAAGTTACT+GGG + chr1_3:21964498-21964517 None:intergenic 30.0%
AAGAGAAATGAAGAAGTTAC+TGG + chr1_3:21964499-21964518 None:intergenic 30.0%
! CTGTTTCATTTTCATTCTGT+CGG - chr1_3:21964582-21964601 Msa0109890:three_prime_UTR 30.0%
ACTATCTTTGTGTTAGATCT+TGG - chr1_3:21964723-21964742 Msa0109890:three_prime_UTR 30.0%
!! TGTCAATTTTCTTGATGGTT+TGG - chr1_3:21964857-21964876 Msa0109890:CDS 30.0%
TAGAAATCCAAGAACTACTA+GGG + chr1_3:21964951-21964970 None:intergenic 30.0%
TCAAGACGACAAAATTGTAA+AGG - chr1_3:21965318-21965337 Msa0109890:intron 30.0%
CTTTCAACATATAAATGTCG+AGG - chr1_3:21965599-21965618 Msa0109890:intron 30.0%
TTCAACATATAAATGTCGAG+GGG - chr1_3:21965601-21965620 Msa0109890:intron 30.0%
GAAAATCGTTGAAAAGACTT+GGG - chr1_3:21965758-21965777 Msa0109890:intron 30.0%
AAAATCGTTGAAAAGACTTG+GGG - chr1_3:21965759-21965778 Msa0109890:intron 30.0%
TGCTCTCGAATAAATATACT+CGG + chr1_3:21965967-21965986 None:intergenic 30.0%
TCTAAGTTTGTCTTTGCTTA+TGG - chr1_3:21966379-21966398 Msa0109890:intron 30.0%
!!! GAAATGCTTTCTGTTTTTGA+AGG - chr1_3:21966425-21966444 Msa0109890:intron 30.0%
ATAAGATGTCTGTCTAAACA+CGG + chr1_3:21966480-21966499 None:intergenic 30.0%
CATCCATAAAATGAATGAAC+CGG + chr1_3:21967205-21967224 None:intergenic 30.0%
!! TACTTTTTACTCGGGTTAAT+AGG - chr1_3:21967248-21967267 Msa0109890:intron 30.0%
GACAATAATCTTAACAACGA+AGG - chr1_3:21967400-21967419 Msa0109890:intron 30.0%
ATAATCTTAACAACGAAGGA+AGG - chr1_3:21967404-21967423 Msa0109890:intron 30.0%
CAAGTTCAAAAGATCTACTT+GGG + chr1_3:21967609-21967628 None:intergenic 30.0%
TAGTAAGAAAGAAAACTCGA+AGG + chr1_3:21968022-21968041 None:intergenic 30.0%
AGTTAGTAGTAGCTCAAAAT+AGG + chr1_3:21968152-21968171 None:intergenic 30.0%
ACTACTAACTGAACCTTTAA+TGG - chr1_3:21968162-21968181 Msa0109890:intron 30.0%
AAGGTTATTTACACATACCA+AGG - chr1_3:21968516-21968535 Msa0109890:intron 30.0%
TATGAAAGCGAGAAGTAAAT+AGG - chr1_3:21968715-21968734 Msa0109890:CDS 30.0%
AATGGATATGAAAGCAAACT+TGG - chr1_3:21968919-21968938 Msa0109890:five_prime_UTR 30.0%
ATGGATATGAAAGCAAACTT+GGG - chr1_3:21968920-21968939 Msa0109890:five_prime_UTR 30.0%
CTCTTAAAGACAAAGATGTT+TGG - chr1_3:21968957-21968976 Msa0109890:five_prime_UTR 30.0%
TCTGTCGAATACAATTCTAA+GGG + chr1_3:21969017-21969036 None:intergenic 30.0%
CATGGAGAATATATTTGAAC+AGG - chr1_3:21969242-21969261 Msa0109890:intron 30.0%
ATGGAGTAAATCATATGTTC+GGG + chr1_3:21969290-21969309 None:intergenic 30.0%
CATGGAGTAAATCATATGTT+CGG + chr1_3:21969291-21969310 None:intergenic 30.0%
AGAAGATCTATTACTTGAGA+TGG - chr1_3:21969354-21969373 Msa0109890:intron 30.0%
TTGTTATCCAGAAGAAATTG+TGG - chr1_3:21969530-21969549 Msa0109890:intron 30.0%
ATATATTCTCTGCTGTTACA+AGG - chr1_3:21969650-21969669 Msa0109890:intron 30.0%
ATGAAATGAGAACCAAAAGA+AGG + chr1_3:21969770-21969789 None:intergenic 30.0%
CATTCTTATGATCATAATGC+AGG - chr1_3:21969793-21969812 Msa0109890:intron 30.0%
CAGGTTATTTATTAAGCCTT+AGG - chr1_3:21969812-21969831 Msa0109890:intron 30.0%
GAATATCCAATGGAAACATT+AGG + chr1_3:21969838-21969857 None:intergenic 30.0%
GCAGAATAATGAATATCCAA+TGG + chr1_3:21969848-21969867 None:intergenic 30.0%
ATTATTCTGCCCTTCAATTT+GGG - chr1_3:21969858-21969877 Msa0109890:five_prime_UTR 30.0%
!! GAGTGTGAAGAAGGTATTAT+CGG + chr1_3:21964436-21964455 None:intergenic 35.0%
AATGAAGAAGTTACTGGGTA+GGG + chr1_3:21964493-21964512 None:intergenic 35.0%
AAATGAAGAAGTTACTGGGT+AGG + chr1_3:21964494-21964513 None:intergenic 35.0%
ATCTGGTACATTTCACTATC+TGG - chr1_3:21964557-21964576 Msa0109890:three_prime_UTR 35.0%
TCTGGTACATTTCACTATCT+GGG - chr1_3:21964558-21964577 Msa0109890:three_prime_UTR 35.0%
CTAGAAATCCAAGAACTACT+AGG + chr1_3:21964952-21964971 None:intergenic 35.0%
CTAGTGATGTGAATTGTACT+TGG - chr1_3:21964968-21964987 Msa0109890:CDS 35.0%
TCAAAGGCTCACATAATCAA+AGG + chr1_3:21965028-21965047 None:intergenic 35.0%
AAAGATTAACCTGCAAGCAA+GGG + chr1_3:21965380-21965399 None:intergenic 35.0%
! TACACACTTTAGGAAGAATC+TGG - chr1_3:21965421-21965440 Msa0109890:CDS 35.0%
AATATTGTGGTTGCTAGTTC+AGG - chr1_3:21965464-21965483 Msa0109890:CDS 35.0%
!! TGTGTTTTGGATGGTGAATT+TGG - chr1_3:21965488-21965507 Msa0109890:CDS 35.0%
! GGTTTTCTATATGTGTTCCA+AGG - chr1_3:21965688-21965707 Msa0109890:intron 35.0%
!!! ACTATTTTGACCACCAAAGA+TGG + chr1_3:21965716-21965735 None:intergenic 35.0%
! ATCTTTGGTGGTCAAAATAG+TGG - chr1_3:21965715-21965734 Msa0109890:intron 35.0%
GGAAAATCGTTGAAAAGACT+TGG - chr1_3:21965757-21965776 Msa0109890:intron 35.0%
AATCTTACAGGGAAACTCTT+CGG + chr1_3:21965880-21965899 None:intergenic 35.0%
AGCTTGCACAAAATCTTACA+GGG + chr1_3:21965891-21965910 None:intergenic 35.0%
AAGCTTGCACAAAATCTTAC+AGG + chr1_3:21965892-21965911 None:intergenic 35.0%
CTCGGCAAATATAATACAAG+AGG + chr1_3:21965949-21965968 None:intergenic 35.0%
TGTCTTTGCTTATGGATCAT+TGG - chr1_3:21966387-21966406 Msa0109890:intron 35.0%
TATGGATCATTGGCAACTAA+TGG - chr1_3:21966397-21966416 Msa0109890:intron 35.0%
TATCTTTCACCTTGTATCCT+GGG + chr1_3:21966602-21966621 None:intergenic 35.0%
ATATCTTTCACCTTGTATCC+TGG + chr1_3:21966603-21966622 None:intergenic 35.0%
!! TGTTGTTTCTTTGGTGTTTC+AGG - chr1_3:21966682-21966701 Msa0109890:CDS 35.0%
!! TGTTTCAGGTTCCTATTAAG+TGG - chr1_3:21966696-21966715 Msa0109890:CDS 35.0%
! GGTGAAAAGATATTTTTCCC+TGG - chr1_3:21966809-21966828 Msa0109890:CDS 35.0%
! GAAAAGATATTTTTCCCTGG+AGG - chr1_3:21966812-21966831 Msa0109890:CDS 35.0%
!!! ACACCGGTTCATTCATTTTA+TGG - chr1_3:21967199-21967218 Msa0109890:intron 35.0%
! CGGTTCATTCATTTTATGGA+TGG - chr1_3:21967203-21967222 Msa0109890:intron 35.0%
TGATATCATTGCAATGTCCT+TGG - chr1_3:21967489-21967508 Msa0109890:intron 35.0%
!! TGATTTTGATGCACGTCATT+GGG + chr1_3:21967517-21967536 None:intergenic 35.0%
!! TTGATTTTGATGCACGTCAT+TGG + chr1_3:21967518-21967537 None:intergenic 35.0%
CAAAAGATCTACTTGGGTAA+GGG + chr1_3:21967603-21967622 None:intergenic 35.0%
TCAAAAGATCTACTTGGGTA+AGG + chr1_3:21967604-21967623 None:intergenic 35.0%
GCAAGTTCAAAAGATCTACT+TGG + chr1_3:21967610-21967629 None:intergenic 35.0%
ATATAGCAATCATTCGTGAG+AGG + chr1_3:21967856-21967875 None:intergenic 35.0%
TCTCACGAATGATTGCTATA+TGG - chr1_3:21967855-21967874 Msa0109890:CDS 35.0%
!! ATCATGAGAAAAGGTACTCA+CGG + chr1_3:21967981-21968000 None:intergenic 35.0%
TGTTGTCAAAATAGTAGCCA+TGG - chr1_3:21968096-21968115 Msa0109890:intron 35.0%
TTCAAGTGAAGTCTTCGAAA+AGG - chr1_3:21968390-21968409 Msa0109890:intron 35.0%
CGACAATTTAAAAGGAATGG+AGG + chr1_3:21968491-21968510 None:intergenic 35.0%
TCGCTGCGATAAATAGTTAA+GGG - chr1_3:21968654-21968673 Msa0109890:CDS 35.0%
GTCATATGTTACAGGAACTT+TGG - chr1_3:21968828-21968847 Msa0109890:five_prime_UTR 35.0%
TGAGAATTACTGGAATCTCA+TGG - chr1_3:21968862-21968881 Msa0109890:five_prime_UTR 35.0%
GAGAATTACTGGAATCTCAT+GGG - chr1_3:21968863-21968882 Msa0109890:five_prime_UTR 35.0%
! ACAGTGTTCGATGAGATTTT+TGG + chr1_3:21968890-21968909 None:intergenic 35.0%
ATGAATGTTGTTCCACCTTA+TGG - chr1_3:21968983-21969002 Msa0109890:five_prime_UTR 35.0%
!! AATACAATTCTAAGGGTGCT+TGG + chr1_3:21969010-21969029 None:intergenic 35.0%
CTCTGTCGAATACAATTCTA+AGG + chr1_3:21969018-21969037 None:intergenic 35.0%
CTTAGAATTGTATTCGACAG+AGG - chr1_3:21969016-21969035 Msa0109890:intron 35.0%
TGGAGTAAATCATATGTTCG+GGG + chr1_3:21969289-21969308 None:intergenic 35.0%
CATATGATTTACTCCATGCA+TGG - chr1_3:21969293-21969312 Msa0109890:intron 35.0%
!! TACCGGTTTCATAATCATCA+GGG - chr1_3:21969393-21969412 Msa0109890:intron 35.0%
ATCCCTGATGATTATGAAAC+CGG + chr1_3:21969398-21969417 None:intergenic 35.0%
AGTATCTAACAGCATTGCAT+TGG - chr1_3:21969446-21969465 Msa0109890:intron 35.0%
GTATCTAACAGCATTGCATT+GGG - chr1_3:21969447-21969466 Msa0109890:intron 35.0%
AGGAGAAAATCACAACTACA+TGG - chr1_3:21969587-21969606 Msa0109890:intron 35.0%
AAGGAATTAACAGCATCACA+TGG - chr1_3:21969669-21969688 Msa0109890:intron 35.0%
TATACTGCTTCCAGAACTAA+TGG + chr1_3:21969695-21969714 None:intergenic 35.0%
CATTATTCTGCCCTTCAATT+TGG - chr1_3:21969857-21969876 Msa0109890:intron 35.0%
CACATAGTAGATTGTCTTTG+TGG - chr1_3:21969908-21969927 Msa0109890:intron 35.0%
GTCTTTGTGGTGAAAAAGTT+AGG - chr1_3:21969921-21969940 Msa0109890:intron 35.0%
! TGAGATTTGGAGTGTGAAGA+AGG + chr1_3:21964445-21964464 None:intergenic 40.0%
GAAGAGAGAGAAGTGAGATT+TGG + chr1_3:21964458-21964477 None:intergenic 40.0%
TTAGTGACCCTAGTAGTTCT+TGG - chr1_3:21964941-21964960 Msa0109890:CDS 40.0%
CAAAGATTAACCTGCAAGCA+AGG + chr1_3:21965381-21965400 None:intergenic 40.0%
!!! TGCTAGTTCAGGTTGTGTTT+TGG - chr1_3:21965475-21965494 Msa0109890:CDS 40.0%
!!! AGTTCAGGTTGTGTTTTGGA+TGG - chr1_3:21965479-21965498 Msa0109890:CDS 40.0%
GGTTCATCTACAGCTGAATA+TGG - chr1_3:21965736-21965755 Msa0109890:intron 40.0%
! TGAATCTTCGAGTTTAGTGC+AGG - chr1_3:21965828-21965847 Msa0109890:intron 40.0%
! GAATCTTCGAGTTTAGTGCA+GGG - chr1_3:21965829-21965848 Msa0109890:intron 40.0%
! GACTTTTTGCTACCACTGTT+TGG + chr1_3:21965993-21966012 None:intergenic 40.0%
TAGAATGACGATCACAACCT+TGG + chr1_3:21966363-21966382 None:intergenic 40.0%
CTATCAAATGAGACTGAAGC+TGG - chr1_3:21966500-21966519 Msa0109890:CDS 40.0%
ATCTTTCACCTTGTATCCTG+GGG + chr1_3:21966601-21966620 None:intergenic 40.0%
! TCTTTTGCAAGGTGAGTATG+TGG + chr1_3:21966758-21966777 None:intergenic 40.0%
! AAGATATTTTTCCCTGGAGG+AGG - chr1_3:21966815-21966834 Msa0109890:CDS 40.0%
! AGATATTTTTCCCTGGAGGA+GGG - chr1_3:21966816-21966835 Msa0109890:CDS 40.0%
TTGCAGCAATCGCAAATGTA+AGG - chr1_3:21966870-21966889 Msa0109890:CDS 40.0%
! TAATAGGCTTTTCAGTGCCA+TGG - chr1_3:21967264-21967283 Msa0109890:intron 40.0%
ACAACCTACATTGTCTACCA+TGG + chr1_3:21967284-21967303 None:intergenic 40.0%
!!! AAGTTTTGGGGCTTATCTTC+TGG - chr1_3:21967462-21967481 Msa0109890:intron 40.0%
AGAGGAATTCCTGCATATCT+TGG - chr1_3:21967556-21967575 Msa0109890:CDS 40.0%
!! CTCTTTGAAGCCAGTCAATT+CGG + chr1_3:21967648-21967667 None:intergenic 40.0%
!! ATTGACTGGCTTCAAAGAGA+TGG - chr1_3:21967649-21967668 Msa0109890:CDS 40.0%
GAGTAAGCAAAATAACCTCC+CGG + chr1_3:21967709-21967728 None:intergenic 40.0%
ACGAAGAGGATTTGAGGATA+TGG - chr1_3:21967752-21967771 Msa0109890:intron 40.0%
AGAGAAATGAGTGCTCTTGT+CGG - chr1_3:21967775-21967794 Msa0109890:intron 40.0%
TGCTATATGGAAAGAGAACC+TGG - chr1_3:21967868-21967887 Msa0109890:CDS 40.0%
! GAAAGAAAACTCGAAGGCAT+AGG + chr1_3:21968016-21968035 None:intergenic 40.0%
TGAAGTCTTCGAAAAGGACA+CGG - chr1_3:21968396-21968415 Msa0109890:intron 40.0%
TTCGAAAAGGACACGGTAAT+TGG - chr1_3:21968403-21968422 Msa0109890:intron 40.0%
CTCGCTGCGATAAATAGTTA+AGG - chr1_3:21968653-21968672 Msa0109890:CDS 40.0%
AAATCTCATCGAACACTGTG+AGG - chr1_3:21968891-21968910 Msa0109890:five_prime_UTR 40.0%
GAACACTGTGAGGAACATAA+TGG - chr1_3:21968901-21968920 Msa0109890:five_prime_UTR 40.0%
TATTCGACAGAGGACTCATA+GGG - chr1_3:21969026-21969045 Msa0109890:intron 40.0%
AGAGTTCCACGTTGTACATA+AGG - chr1_3:21969152-21969171 Msa0109890:intron 40.0%
AAAGGACCTTATGTACAACG+TGG + chr1_3:21969161-21969180 None:intergenic 40.0%
TTCTCCATGCGTCAGAAAAA+TGG + chr1_3:21969231-21969250 None:intergenic 40.0%
GGAGTAAATCATATGTTCGG+GGG + chr1_3:21969288-21969307 None:intergenic 40.0%
CGCTTGTACGTCAGAAAAAA+CGG + chr1_3:21969320-21969339 None:intergenic 40.0%
ATTACTTGAGATGGACCGTT+TGG - chr1_3:21969363-21969382 Msa0109890:intron 40.0%
CTGATGATTATGAAACCGGT+AGG + chr1_3:21969394-21969413 None:intergenic 40.0%
!! CTACCGGTTTCATAATCATC+AGG - chr1_3:21969392-21969411 Msa0109890:intron 40.0%
TAGTGAGCCACAATTTCTTC+TGG + chr1_3:21969540-21969559 None:intergenic 40.0%
CAATGGAAACATTAGGCCTA+AGG + chr1_3:21969831-21969850 None:intergenic 40.0%
CTTAGGCCTAATGTTTCCAT+TGG - chr1_3:21969829-21969848 Msa0109890:intron 40.0%
GCCTTTGATCAAGCTTTGCT+AGG - chr1_3:21965040-21965059 Msa0109890:CDS 45.0%
GCCTAGCAAAGCTTGATCAA+AGG + chr1_3:21965044-21965063 None:intergenic 45.0%
CGTTTAGTTGCTTCCGTTTG+TGG - chr1_3:21965649-21965668 Msa0109890:intron 45.0%
!! AAAGAGTGCCACACCACAAA+CGG + chr1_3:21965665-21965684 None:intergenic 45.0%
GTGTTCCAAGGATCCATCTT+TGG - chr1_3:21965700-21965719 Msa0109890:intron 45.0%
TTCCAAGGATCCATCTTTGG+TGG - chr1_3:21965703-21965722 Msa0109890:intron 45.0%
!! AAGACTTGGGGCATCGTATT+TGG - chr1_3:21965771-21965790 Msa0109890:intron 45.0%
!! AGACTTGGGGCATCGTATTT+GGG - chr1_3:21965772-21965791 Msa0109890:intron 45.0%
TTTAGTGCAGGGAGATACGT+TGG - chr1_3:21965840-21965859 Msa0109890:intron 45.0%
ACGGAATCAACTCTGAGTGA+CGG + chr1_3:21966461-21966480 None:intergenic 45.0%
GAAGCTGGATCTTTCTGTGA+TGG - chr1_3:21966515-21966534 Msa0109890:CDS 45.0%
TCTTTCACCTTGTATCCTGG+GGG + chr1_3:21966600-21966619 None:intergenic 45.0%
TATTAAGTGGCCACAGAGCA+GGG - chr1_3:21966709-21966728 Msa0109890:CDS 45.0%
CTTTCACAACCATCCAGTTC+TGG + chr1_3:21966790-21966809 None:intergenic 45.0%
CAGAACTGGATGGTTGTGAA+AGG - chr1_3:21966788-21966807 Msa0109890:CDS 45.0%
! GGAGGGACTCATTTTCACTA+CGG - chr1_3:21966833-21966852 Msa0109890:CDS 45.0%
! GCTATAGCACTGTTGCTTAG+CGG - chr1_3:21967133-21967152 Msa0109890:intron 45.0%
GTGTTGTCAATCACGGATCA+CGG + chr1_3:21967183-21967202 None:intergenic 45.0%
TGATCCGTGATTGACAACAC+CGG - chr1_3:21967183-21967202 Msa0109890:intron 45.0%
!! TGAACCGGTGTTGTCAATCA+CGG + chr1_3:21967190-21967209 None:intergenic 45.0%
AGTGCCATGGTAGACAATGT+AGG - chr1_3:21967277-21967296 Msa0109890:intron 45.0%
TGTCGGTAAAGTTGAGCATC+TGG + chr1_3:21967384-21967403 None:intergenic 45.0%
CTGCGAACTGTTCTTGATGT+TGG - chr1_3:21967427-21967446 Msa0109890:intron 45.0%
! ACTGTTCTTGATGTTGGCTG+TGG - chr1_3:21967433-21967452 Msa0109890:intron 45.0%
!!! GCTGTGGTGTTGCAAGTTTT+GGG - chr1_3:21967449-21967468 Msa0109890:intron 45.0%
!!! CTGTGGTGTTGCAAGTTTTG+GGG - chr1_3:21967450-21967469 Msa0109890:intron 45.0%
!! TCCTGCATATCTTGGTGTCT+TGG - chr1_3:21967564-21967583 Msa0109890:CDS 45.0%
!! CCTGCATATCTTGGTGTCTT+GGG - chr1_3:21967565-21967584 Msa0109890:CDS 45.0%
TAAGAACACGGTCAAGCTCA+AGG + chr1_3:21967684-21967703 None:intergenic 45.0%
TTGAGCTTGACCGTGTTCTT+AGG - chr1_3:21967683-21967702 Msa0109890:CDS 45.0%
AGAGAGACCAAACTGTCATC+TGG - chr1_3:21967824-21967843 Msa0109890:CDS 45.0%
GTTTCTGCCAGATGACAGTT+TGG + chr1_3:21967834-21967853 None:intergenic 45.0%
TGCAGTTTGGGGAGTGAATA+TGG - chr1_3:21967930-21967949 Msa0109890:CDS 45.0%
ATCAGATGACAACAGAGCAC+AGG - chr1_3:21968300-21968319 Msa0109890:intron 45.0%
TCAGATGACAACAGAGCACA+GGG - chr1_3:21968301-21968320 Msa0109890:intron 45.0%
AGGGTAGTGAATTAGCTCCA+TGG - chr1_3:21968320-21968339 Msa0109890:intron 45.0%
AGACTTCACTTGAAATGCCG+AGG + chr1_3:21968384-21968403 None:intergenic 45.0%
GTATTCGACAGAGGACTCAT+AGG - chr1_3:21969025-21969044 Msa0109890:intron 45.0%
TCATAGGGACTACTCATGAC+TGG - chr1_3:21969041-21969060 Msa0109890:intron 45.0%
!! TGGACCATTTTTCTGACGCA+TGG - chr1_3:21969224-21969243 Msa0109890:intron 45.0%
CAGAAAAAACGGTCCATGCA+TGG + chr1_3:21969309-21969328 None:intergenic 45.0%
TTGAGATGGACCGTTTGGTT+AGG - chr1_3:21969368-21969387 Msa0109890:intron 45.0%
ATCTTGGTCAGAGTCAGAAC+TGG + chr1_3:21969494-21969513 None:intergenic 45.0%
! AGTTCTGACTCTGACCAAGA+TGG - chr1_3:21969493-21969512 Msa0109890:intron 45.0%
GCTCACTACTGAAAGCCTTA+GGG - chr1_3:21969552-21969571 Msa0109890:intron 45.0%
CATCACATGGCCATTAGTTC+TGG - chr1_3:21969682-21969701 Msa0109890:intron 45.0%
ACTACTGTTCCCTTGCTTGC+AGG - chr1_3:21965368-21965387 Msa0109890:CDS 50.0%
AGTTGCTTCCGTTTGTGGTG+TGG - chr1_3:21965654-21965673 Msa0109890:intron 50.0%
TGTGGTGTGGCACTCTTTCT+CGG - chr1_3:21965667-21965686 Msa0109890:intron 50.0%
GACCACCAAAGATGGATCCT+TGG + chr1_3:21965708-21965727 None:intergenic 50.0%
TCGAGAGCAACACCAAACAG+TGG - chr1_3:21965978-21965997 Msa0109890:intron 50.0%
CAATTGTACCGCCTTTCTGC+AGG + chr1_3:21966564-21966583 None:intergenic 50.0%
CTGCTCTGTGGCCACTTAAT+AGG + chr1_3:21966710-21966729 None:intergenic 50.0%
CTATTAAGTGGCCACAGAGC+AGG - chr1_3:21966708-21966727 Msa0109890:CDS 50.0%
! GGTCGGACTTCTCTTTTGCA+AGG + chr1_3:21966769-21966788 None:intergenic 50.0%
AAGAGAAGTCCGACCAGAAC+TGG - chr1_3:21966774-21966793 Msa0109890:CDS 50.0%
! CACAACCATCCAGTTCTGGT+CGG + chr1_3:21966786-21966805 None:intergenic 50.0%
GAAAATGAGTCCCTCCTCCA+GGG + chr1_3:21966829-21966848 None:intergenic 50.0%
TGAAAATGAGTCCCTCCTCC+AGG + chr1_3:21966830-21966849 None:intergenic 50.0%
!!! GGCTGTGGTGTTGCAAGTTT+TGG - chr1_3:21967448-21967467 Msa0109890:intron 50.0%
CCCAAGACACCAAGATATGC+AGG + chr1_3:21967568-21967587 None:intergenic 50.0%
ACTTGGGTAAGGGAGTCTCT+TGG + chr1_3:21967593-21967612 None:intergenic 50.0%
GTTCTCGTTGCCGAATTGAC+TGG - chr1_3:21967635-21967654 Msa0109890:CDS 50.0%
! GTCTCCAGAAGCATATGCTC+AGG - chr1_3:21967729-21967748 Msa0109890:intron 50.0%
TCGTCCTGAGCATATGCTTC+TGG + chr1_3:21967736-21967755 None:intergenic 50.0%
AGCATATGCTCAGGACGAAG+AGG - chr1_3:21967738-21967757 Msa0109890:intron 50.0%
CTCAGGACGAAGAGGATTTG+AGG - chr1_3:21967746-21967765 Msa0109890:intron 50.0%
TCATCAGACTGGCAAAGAGG+AGG + chr1_3:21967901-21967920 None:intergenic 50.0%
TCGTCATCAGACTGGCAAAG+AGG + chr1_3:21967904-21967923 None:intergenic 50.0%
ATGACGACCCAGATGCAGTT+TGG - chr1_3:21967917-21967936 Msa0109890:CDS 50.0%
TGACGACCCAGATGCAGTTT+GGG - chr1_3:21967918-21967937 Msa0109890:CDS 50.0%
TCACTCCCCAAACTGCATCT+GGG + chr1_3:21967927-21967946 None:intergenic 50.0%
TTCACTCCCCAAACTGCATC+TGG + chr1_3:21967928-21967947 None:intergenic 50.0%
AGGTACTCACGGTCAGAGTA+AGG + chr1_3:21967970-21967989 None:intergenic 50.0%
AATTAGCTCCATGGCCTTCG+AGG - chr1_3:21968329-21968348 Msa0109890:intron 50.0%
AGCTAATCTAGGAGGAGGAC+TGG + chr1_3:21968359-21968378 None:intergenic 50.0%
AGGTCAGCTAATCTAGGAGG+AGG + chr1_3:21968364-21968383 None:intergenic 50.0%
! CCTCCTAGATTAGCTGACCT+CGG - chr1_3:21968364-21968383 Msa0109890:intron 50.0%
ATGCCGAGGTCAGCTAATCT+AGG + chr1_3:21968370-21968389 None:intergenic 50.0%
!! CTAAGGGTGCTTGGTCCATA+AGG + chr1_3:21969001-21969020 None:intergenic 50.0%
AACCGGTAGGCCTAACCAAA+CGG + chr1_3:21969381-21969400 None:intergenic 50.0%
GGCTCACTACTGAAAGCCTT+AGG - chr1_3:21969551-21969570 Msa0109890:intron 50.0%
CCTATTCTGCTGCATCCCTA+AGG + chr1_3:21969570-21969589 None:intergenic 50.0%
CCTTAGGGATGCAGCAGAAT+AGG - chr1_3:21969567-21969586 Msa0109890:intron 50.0%
ATGTCGAGGGGCAGATCTGA+TGG - chr1_3:21965613-21965632 Msa0109890:intron 55.0%
GACATTGCCCTCCTGCAGAA+AGG - chr1_3:21966550-21966569 Msa0109890:CDS 55.0%
ATTGCCCTCCTGCAGAAAGG+CGG - chr1_3:21966553-21966572 Msa0109890:CDS 55.0%
TGTACCGCCTTTCTGCAGGA+GGG + chr1_3:21966560-21966579 None:intergenic 55.0%
TTGTACCGCCTTTCTGCAGG+AGG + chr1_3:21966561-21966580 None:intergenic 55.0%
TTCACCTTGTATCCTGGGGG+AGG + chr1_3:21966597-21966616 None:intergenic 55.0%
GAAGTCCGACCAGAACTGGA+TGG - chr1_3:21966778-21966797 Msa0109890:CDS 55.0%
ACCGCTGCAATGCAAAGCAG+CGG - chr1_3:21966903-21966922 Msa0109890:CDS 55.0%
! TCCGCTGCTTTGCATTGCAG+CGG + chr1_3:21966907-21966926 None:intergenic 55.0%
ATGCACGTCATTGGGTGCCA+AGG + chr1_3:21967509-21967528 None:intergenic 55.0%
GCTTGACCGTGTTCTTAGGC+CGG - chr1_3:21967687-21967706 Msa0109890:CDS 55.0%
CTTGACCGTGTTCTTAGGCC+GGG - chr1_3:21967688-21967707 Msa0109890:CDS 55.0%
AACCTCCCGGCCTAAGAACA+CGG + chr1_3:21967696-21967715 None:intergenic 55.0%
CTCTTGTCGGACGCATGTGT+TGG - chr1_3:21967788-21967807 Msa0109890:intron 55.0%
CAAAGAGGAGGACGAGTACC+AGG + chr1_3:21967889-21967908 None:intergenic 55.0%
CATCTGGGTCGTCATCAGAC+TGG + chr1_3:21967912-21967931 None:intergenic 55.0%
GACGACCCAGATGCAGTTTG+GGG - chr1_3:21967919-21967938 Msa0109890:CDS 55.0%
CCGAGGTCAGCTAATCTAGG+AGG + chr1_3:21968367-21968386 None:intergenic 55.0%
! AGGGTGCTTGGTCCATAAGG+TGG + chr1_3:21968998-21969017 None:intergenic 55.0%
GACCGTTTGGTTAGGCCTAC+CGG - chr1_3:21969376-21969395 Msa0109890:intron 55.0%
AAGGGACGACAGCATCGCCA+AGG - chr1_3:21966343-21966362 Msa0109890:intron 60.0%
TGCTTGATTCCTCCTCCCCC+AGG - chr1_3:21966582-21966601 Msa0109890:CDS 60.0%
TCCTCCTCCCCCAGGATACA+AGG - chr1_3:21966590-21966609 Msa0109890:CDS 60.0%
ACCTTGTATCCTGGGGGAGG+AGG + chr1_3:21966594-21966613 None:intergenic 60.0%
TAAGTGGCCACAGAGCAGGG+AGG - chr1_3:21966712-21966731 Msa0109890:CDS 60.0%
CATACCTCCTCCCTGCTCTG+TGG + chr1_3:21966722-21966741 None:intergenic 60.0%
CACAGAGCAGGGAGGAGGTA+TGG - chr1_3:21966720-21966739 Msa0109890:CDS 60.0%
CTGGTCAACCTCGAAGGCCA+TGG + chr1_3:21968340-21968359 None:intergenic 60.0%
!! GGAGGACTGGTCAACCTCGA+AGG + chr1_3:21968346-21968365 None:intergenic 60.0%
GACCGTGTTCTTAGGCCGGG+AGG - chr1_3:21967691-21967710 Msa0109890:CDS 65.0%
GTGGCCACAGAGCAGGGAGG+AGG - chr1_3:21966715-21966734 Msa0109890:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 21964351 21970068 21964351 ID=Msa0109890;Name=Msa0109890
chr1_3 mRNA 21964351 21970068 21964351 ID=Msa0109890-mRNA-1;Parent=Msa0109890;Name=Msa0109890-mRNA-1;_AED=0.05;_eAED=0.05;_QI=405|1|1|1|0.75|0.66|9|480|626
chr1_3 exon 21964351 21965155 21964351 ID=Msa0109890-mRNA-1:exon:7881;Parent=Msa0109890-mRNA-1
chr1_3 exon 21965357 21965577 21965357 ID=Msa0109890-mRNA-1:exon:7880;Parent=Msa0109890-mRNA-1
chr1_3 exon 21966002 21966114 21966002 ID=Msa0109890-mRNA-1:exon:7879;Parent=Msa0109890-mRNA-1
chr1_3 exon 21966440 21967034 21966440 ID=Msa0109890-mRNA-1:exon:7878;Parent=Msa0109890-mRNA-1
chr1_3 exon 21967533 21967715 21967533 ID=Msa0109890-mRNA-1:exon:7877;Parent=Msa0109890-mRNA-1
chr1_3 exon 21967808 21967972 21967808 ID=Msa0109890-mRNA-1:exon:7876;Parent=Msa0109890-mRNA-1
chr1_3 exon 21968528 21969029 21968528 ID=Msa0109890-mRNA-1:exon:7875;Parent=Msa0109890-mRNA-1
chr1_3 exon 21969858 21969916 21969858 ID=Msa0109890-mRNA-1:exon:7874;Parent=Msa0109890-mRNA-1
chr1_3 exon 21969946 21970068 21969946 ID=Msa0109890-mRNA-1:exon:7873;Parent=Msa0109890-mRNA-1
chr1_3 five_prime_UTR 21969946 21970068 21969946 ID=Msa0109890-mRNA-1:five_prime_utr;Parent=Msa0109890-mRNA-1
chr1_3 five_prime_UTR 21969858 21969916 21969858 ID=Msa0109890-mRNA-1:five_prime_utr;Parent=Msa0109890-mRNA-1
chr1_3 five_prime_UTR 21968807 21969029 21968807 ID=Msa0109890-mRNA-1:five_prime_utr;Parent=Msa0109890-mRNA-1
chr1_3 CDS 21968528 21968806 21968528 ID=Msa0109890-mRNA-1:cds;Parent=Msa0109890-mRNA-1
chr1_3 CDS 21967808 21967972 21967808 ID=Msa0109890-mRNA-1:cds;Parent=Msa0109890-mRNA-1
chr1_3 CDS 21967533 21967715 21967533 ID=Msa0109890-mRNA-1:cds;Parent=Msa0109890-mRNA-1
chr1_3 CDS 21966440 21967034 21966440 ID=Msa0109890-mRNA-1:cds;Parent=Msa0109890-mRNA-1
chr1_3 CDS 21966002 21966114 21966002 ID=Msa0109890-mRNA-1:cds;Parent=Msa0109890-mRNA-1
chr1_3 CDS 21965357 21965577 21965357 ID=Msa0109890-mRNA-1:cds;Parent=Msa0109890-mRNA-1
chr1_3 CDS 21964831 21965155 21964831 ID=Msa0109890-mRNA-1:cds;Parent=Msa0109890-mRNA-1
chr1_3 three_prime_UTR 21964351 21964830 21964351 ID=Msa0109890-mRNA-1:three_prime_utr;Parent=Msa0109890-mRNA-1
Gene Sequence

>Msa0109890

ATGTCGAGGGGCAGATCTGATGGATCGCAAAAGAAGCGTTTAGTTGCTTCCGTTTGTGGTGTGGCACTCTTTCTCGGTTTTCTATATGTGTTCCAAGGATCCATCTTTGGTGGTCAAAATAGTGGTTCATCTACAGCTGAATATGGAAAATCGTTGAAAAGACTTGGGGCATCGTATTTGGGTGCAGATGAAGATGCAGATAACAAGCAACAAGATGAATCTTCGAGTTTAGTGCAGGGAGATACGTTGGCTGATGATATTGTGCCGAAGAGTTTCCCTGTTTGTGATGACCGTCACTCAGAGTTGATTCCGTGTTTAGACAGACATCTTATCTATCAAATGAGACTGAAGCTGGATCTTTCTGTGATGGAACACTACGAGAGACATTGCCCTCCTGCAGAAAGGCGGTACAATTGCTTGATTCCTCCTCCCCCAGGATACAAGGTTCCTATTAAGTGGCCACAGAGCAGGGAGGAGGTATGGAAAGTAAATATACCACATACTCACCTTGCAAAAGAGAAGTCCGACCAGAACTGGATGGTTGTGAAAGGTGAAAAGATATTTTTCCCTGGAGGAGGGACTCATTTTCACTACGGAGCTGATAAGTACATTGCAGCAATCGCAAATATGCTCAACTTTACCGACAATAATCTTAACAACGAAGGAAGGCTGCGAACTGTTCTTGATGTTGGCTGTGGTGTTGCAAGTTTTGGGGCTTATCTTCTGGCATCTGATATCATTGCAATGTCCTTGGCACCCAATGACGTGCATCAAAATCAAATTCAATTTGCTTTAGAAAGAGGAATTCCTGCATATCTTGGTGTCTTGGGAACCAAGAGACTCCCTTACCCAAGTAGATCTTTTGAACTTGCACATTGTTCTCGTTGCCGAATTGACTGGCTTCAAAGAGATGGAATACTACTCCTTGAGCTTGACCGTGTTCTTAGGCCGGGAGGTTATTTTGCTTACTCGTCTCCAGAAGCATATGCTCAGGACGAAGAGGATTTGAGGATATGGAGAGAAATGAGTGCTCTTGTCGGACGCATGTGTTGGAGAATTGCTTCAAAGAGAGACCAAACTGTCATCTGGCAGAAACCTCTCACGAATGATTGCTATATGGAAAGAGAACCTGGTACTCGTCCTCCTCTTTGCCAGTCTGATGACGACCCAGATGCAGTTTGGGGAGTGAATATGGAAACTTGCATAACACCTTACTCTGACCATGACAACAGAGCACAGGGTAGTGAATTAGCTCCATGGCCTTCGAGGTTGACCAGTCCTCCTCCTAGATTAGCTGACCTCGGCATTTCAAGTGAAGTCTTCGAAAAGGACACGGAACTTTGGCAAAAAAGAATTGAGAATTACTGGAATCTCATGGGTCCAAAAATCTCATCGAACACTGTGAGGAACATAATGGATATGAAAGCAAACTTGGGTTCATTTGCAGCTGCTCTTAAAGACAAAGATGTTTGGGTGATGAATGTTGTTCCACCTTATGGACCAAGCACCCTTAGAATTGTATTCGACAGAGGACTCATAGGGACTACTCATGACTGGTGTGAAGCATTTTCAACATACCCCCGAACATATGATTTACTCCATGCATGGACCGTTTTTTCTGACGTACAAGCGAAAGAGTGCAGTCAAGAAGATCTATTACTTGAGATGGACCGTTTGGTTAGGCCTACCGGTTTCATAATCATCAGGGATAAACAACCTGTGATTGATTTTGTTAAGAAGTATCTAACAGCATTGCATTGGGAAGAAGTAGCAACTGCAGATTCCAGTTCTGACTCTGACCAAGATGGCAATGAAATTATTTTTGTTATCCAGAAGAAATTGTGGCTCACTACTGAAAGCCTTAGGGATGCAGCAGAATAG
Protein sequence

>Msa0109890

MSRGRSDGSQKKRLVASVCGVALFLGFLYVFQGSIFGGQNSGSSTAEYGKSLKRLGASYLGADEDADNKQQDESSSLVQGDTLADDIVPKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLSVMEHYERHCPPAERRYNCLIPPPPGYKVPIKWPQSREEVWKVNIPHTHLAKEKSDQNWMVVKGEKIFFPGGGTHFHYGADKYIAAIANMLNFTDNNLNNEGRLRTVLDVGCGVASFGAYLLASDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVGRMCWRIASKRDQTVIWQKPLTNDCYMEREPGTRPPLCQSDDDPDAVWGVNMETCITPYSDHDNRAQGSELAPWPSRLTSPPPRLADLGISSEVFEKDTELWQKRIENYWNLMGPKISSNTVRNIMDMKANLGSFAAALKDKDVWVMNVVPPYGPSTLRIVFDRGLIGTTHDWCEAFSTYPRTYDLLHAWTVFSDVQAKECSQEDLLLEMDRLVRPTGFIIIRDKQPVIDFVKKYLTALHWEEVATADSSSDSDQDGNEIIFVIQKKLWLTTESLRDAAE*