Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404680 | XP_003602305.1 | 99.346 | 459 | 3 | 0 | 1 | 459 | 1 | 459 | 0.0 | 930 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404680 | sp|Q6N075|MFSD5_HUMAN | 35.294 | 459 | 270 | 11 | 6 | 456 | 6 | 445 | 5.42e-73 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404680 | G7J858 | 99.346 | 459 | 3 | 0 | 1 | 459 | 1 | 459 | 0.0 | 930 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0079280 | Msa1404680 | 0.817006 | 4.124521e-52 | -8.615850e-47 |
| Msa1365820 | Msa1404680 | 0.801212 | 1.001458e-48 | -8.615850e-47 |
| Msa1383820 | Msa1404680 | 0.835740 | 1.406966e-56 | -8.615850e-47 |
| Msa1404680 | Msa1446670 | 0.805738 | 1.154994e-49 | -8.615850e-47 |
| Msa1404680 | Msa1450520 | 0.840355 | 9.140619e-58 | -8.615850e-47 |
| Msa1404680 | Msa1455400 | 0.992592 | 3.175526e-194 | -8.615850e-47 |
| Msa0617940 | Msa1404680 | 0.806642 | 7.450107e-50 | -8.615850e-47 |
| Msa0632130 | Msa1404680 | 0.808109 | 3.639565e-50 | -8.615850e-47 |
| Msa0748740 | Msa1404680 | 0.831153 | 1.961121e-55 | -8.615850e-47 |
| Msa0799450 | Msa1404680 | 0.814604 | 1.415743e-51 | -8.615850e-47 |
| Msa0837710 | Msa1404680 | 0.818976 | 1.479695e-52 | -8.615850e-47 |
| Msa0156240 | Msa1404680 | 0.831423 | 1.683556e-55 | -8.615850e-47 |
| Msa0164290 | Msa1404680 | 0.804642 | 1.958668e-49 | -8.615850e-47 |
| Msa0207680 | Msa1404680 | 0.809224 | 2.103349e-50 | -8.615850e-47 |
| Msa1257720 | Msa1404680 | 0.845229 | 4.625709e-59 | -8.615850e-47 |
| Msa1257780 | Msa1404680 | 0.851403 | 9.079617e-61 | -8.615850e-47 |
| Msa0380980 | Msa1404680 | 0.824723 | 6.917197e-54 | -8.615850e-47 |
| Msa0383660 | Msa1404680 | 0.820963 | 5.194924e-53 | -8.615850e-47 |
| Msa0385310 | Msa1404680 | 0.830019 | 3.717643e-55 | -8.615850e-47 |
| Msa0389690 | Msa1404680 | 0.806515 | 7.925177e-50 | -8.615850e-47 |
| Msa0425310 | Msa1404680 | 0.887557 | 1.285686e-72 | -8.615850e-47 |
| Msa0427420 | Msa1404680 | 0.818748 | 1.667337e-52 | -8.615850e-47 |
| Msa0427480 | Msa1404680 | 0.818435 | 1.962771e-52 | -8.615850e-47 |
| Msa0427760 | Msa1404680 | 0.852335 | 4.939004e-61 | -8.615850e-47 |
| Msa0427950 | Msa1404680 | 0.849068 | 4.099118e-60 | -8.615850e-47 |
| Msa0447440 | Msa1404680 | 0.801090 | 1.060770e-48 | -8.615850e-47 |
| Msa0479420 | Msa1404680 | 0.813255 | 2.807426e-51 | -8.615850e-47 |
| Msa1070890 | Msa1404680 | 0.822017 | 2.965717e-53 | -8.615850e-47 |
| Msa1078660 | Msa1404680 | 0.801763 | 7.723971e-49 | -8.615850e-47 |
| Msa1101120 | Msa1404680 | 0.830210 | 3.338513e-55 | -8.615850e-47 |
| Msa0249850 | Msa1404680 | 0.811005 | 8.692734e-51 | -8.615850e-47 |
| Msa0287640 | Msa1404680 | 0.811254 | 7.675294e-51 | -8.615850e-47 |
| Msa0307500 | Msa1404680 | 0.800329 | 1.516448e-48 | -8.615850e-47 |
| Msa1166100 | Msa1404680 | 0.800469 | 1.420217e-48 | -8.615850e-47 |
| Msa1169380 | Msa1404680 | 0.806649 | 7.424144e-50 | -8.615850e-47 |
| Msa1207840 | Msa1404680 | 0.845034 | 5.224348e-59 | -8.615850e-47 |
| Msa1215930 | Msa1404680 | 0.834789 | 2.446003e-56 | -8.615850e-47 |
| Msa0518320 | Msa1404680 | 0.801588 | 8.389881e-49 | -8.615850e-47 |
| Msa0521890 | Msa1404680 | 0.839570 | 1.463880e-57 | -8.615850e-47 |
| Msa0523110 | Msa1404680 | 0.840515 | 8.301297e-58 | -8.615850e-47 |
| Msa0558720 | Msa1404680 | 0.810763 | 9.805002e-51 | -8.615850e-47 |
| Msa0574900 | Msa1404680 | 0.808682 | 2.746707e-50 | -8.615850e-47 |
| Msa0930770 | Msa1404680 | 0.822957 | 1.793859e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404680 | MtrunA17_Chr3g0127341 | 99.346 | 459 | 3 | 0 | 1 | 459 | 1 | 459 | 0.0 | 930 |
| Msa1404680 | MtrunA17_Chr5g0401471 | 27.078 | 373 | 240 | 7 | 32 | 397 | 47 | 394 | 1.59e-32 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404680 | AT4G27720.1 | 85.000 | 460 | 68 | 1 | 1 | 459 | 1 | 460 | 0.0 | 818 |
| Msa1404680 | AT3G49310.1 | 81.739 | 460 | 83 | 1 | 1 | 459 | 1 | 460 | 0.0 | 793 |
| Msa1404680 | AT1G64650.1 | 81.345 | 461 | 83 | 2 | 1 | 458 | 1 | 461 | 0.0 | 790 |
| Msa1404680 | AT1G64650.2 | 81.068 | 412 | 75 | 2 | 50 | 458 | 9 | 420 | 0.0 | 704 |
| Msa1404680 | AT2G23093.1 | 25.517 | 435 | 273 | 13 | 30 | 446 | 46 | 447 | 4.06e-21 | 95.9 |
| Msa1404680 | AT2G23093.2 | 25.250 | 400 | 248 | 13 | 65 | 446 | 14 | 380 | 3.74e-19 | 89.4 |
Find 135 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCGCAGCACCCCTAAAT+TGG | 0.113644 | tig0023079:+42830 | None:intergenic |
| CGCCGGGTGCATTCAGCTTT+TGG | 0.118395 | tig0023079:-42112 | Msa1404680:CDS |
| CTTACTTATGTCAATTCTTT+TGG | 0.125118 | tig0023079:-40690 | Msa1404680:three_prime_UTR |
| CAACTCTTCATTGCTGGATT+TGG | 0.156725 | tig0023079:-44420 | Msa1404680:CDS |
| TACAAAATTAAGACAATTAA+AGG | 0.164320 | tig0023079:+40624 | None:intergenic |
| ACAGAGAAATGTTGTAAAAT+TGG | 0.205061 | tig0023079:+45413 | None:intergenic |
| TTCTCGAAGGCTATATTTCT+TGG | 0.216269 | tig0023079:-43033 | Msa1404680:CDS |
| AGAGCTTGCTTGCCCAATTT+AGG | 0.224575 | tig0023079:-42843 | Msa1404680:CDS |
| ATCTGTAATTGATTAAGTTT+TGG | 0.229731 | tig0023079:-40951 | Msa1404680:exon |
| TTGAGGAGAAATCTCCATTT+TGG | 0.255910 | tig0023079:-40721 | Msa1404680:three_prime_UTR |
| AACTCTTCATTGCTGGATTT+GGG | 0.263781 | tig0023079:-44419 | Msa1404680:CDS |
| CTTGATGTTGGGCCGTATCT+TGG | 0.280247 | tig0023079:-44177 | Msa1404680:CDS |
| AAAGTTGTGTTGGCATATTC+TGG | 0.280683 | tig0023079:-42074 | Msa1404680:CDS |
| TCCAAACAGCCCAGAAAATA+TGG | 0.295391 | tig0023079:+42996 | None:intergenic |
| GAGCTTGCTTGCCCAATTTA+GGG | 0.300525 | tig0023079:-42842 | Msa1404680:CDS |
| TTCCCTATCACTGTTATGTT+TGG | 0.303539 | tig0023079:-41599 | Msa1404680:CDS |
| GCTGCGGTGGCCATTGCTTC+TGG | 0.308302 | tig0023079:-42817 | Msa1404680:intron |
| AGTAAGAACTACTACCAAAA+TGG | 0.322831 | tig0023079:+40707 | None:intergenic |
| GTGAAGGAGTTCAAGCTAAA+AGG | 0.325343 | tig0023079:-40823 | Msa1404680:three_prime_UTR |
| CTATACAGTACGTATGGATA+TGG | 0.330750 | tig0023079:-44459 | Msa1404680:CDS |
| CCACCACCTGTTGCTTTAGT+AGG | 0.348043 | tig0023079:+42144 | None:intergenic |
| TCTCTGTTAACTCGCGATAA+TGG | 0.351173 | tig0023079:-45397 | Msa1404680:exon |
| TTTGGGTCTTCGATGTTATT+CGG | 0.354101 | tig0023079:-44402 | Msa1404680:CDS |
| ATGCCAAACATAACAGTGAT+AGG | 0.360971 | tig0023079:+41596 | None:intergenic |
| CTTGTTGATACATTGGCTCT+TGG | 0.361460 | tig0023079:-42967 | Msa1404680:CDS |
| ATCGGACAACTCTTCATTGC+TGG | 0.362820 | tig0023079:-44426 | Msa1404680:CDS |
| AACTCCTTCACTTGGTTGGT+GGG | 0.364271 | tig0023079:+40835 | None:intergenic |
| AAGGCTATATTTCTTGGAAA+TGG | 0.366820 | tig0023079:-43027 | Msa1404680:CDS |
| CTCGCTTGCATCTAAGTTGA+TGG | 0.381655 | tig0023079:-42364 | Msa1404680:CDS |
| TTGAGATCTCATCTTCATAA+TGG | 0.384178 | tig0023079:+42047 | None:intergenic |
| TTCTCCTCAAGTAAAATAAT+AGG | 0.387414 | tig0023079:+40734 | None:intergenic |
| ACACACTCTGCAAGAGAGAC+TGG | 0.389907 | tig0023079:-45444 | Msa1404680:five_prime_UTR |
| GGATCTAAGTTTGTCTCGTT+GGG | 0.396886 | tig0023079:-40661 | Msa1404680:three_prime_UTR |
| CTCATTTATTCTCTCATGAT+GGG | 0.397970 | tig0023079:-45249 | Msa1404680:intron |
| TCTCATTTATTCTCTCATGA+TGG | 0.399753 | tig0023079:-45250 | Msa1404680:CDS |
| AAAGTTCATGATGGTGCTCC+TGG | 0.400456 | tig0023079:+42008 | None:intergenic |
| AAGTCACACAAGCTCTCTTC+CGG | 0.400505 | tig0023079:+44255 | None:intergenic |
| CACCGCAGCACCCCTAAATT+GGG | 0.400707 | tig0023079:+42831 | None:intergenic |
| GCCATACAGTCTCTCTTTGA+AGG | 0.407686 | tig0023079:-42498 | Msa1404680:CDS |
| ATTCATGTTATCTTCAATGT+TGG | 0.410052 | tig0023079:-42391 | Msa1404680:CDS |
| TGTATACCTTTGTGTTCCTA+TGG | 0.414069 | tig0023079:-42470 | Msa1404680:CDS |
| ATGTTATTCGGAACAATTGT+GGG | 0.415436 | tig0023079:-44390 | Msa1404680:CDS |
| GAGAGAGAGAAGGGTGAAGA+AGG | 0.417967 | tig0023079:+45527 | None:intergenic |
| TTGTTCTTCTACCTTGTCTT+CGG | 0.421408 | tig0023079:-45372 | Msa1404680:CDS |
| TTCATGTTATCTTCAATGTT+GGG | 0.421818 | tig0023079:-42390 | Msa1404680:CDS |
| GAACTCCTTCACTTGGTTGG+TGG | 0.422041 | tig0023079:+40834 | None:intergenic |
| GACAGAAACTGCATTATGTA+AGG | 0.422323 | tig0023079:+40902 | None:intergenic |
| GCAGTTCCTACTAAAGCAAC+AGG | 0.424570 | tig0023079:-42150 | Msa1404680:CDS |
| TTAATCAATTACAGATTCAA+TGG | 0.425661 | tig0023079:+40958 | None:intergenic |
| CATATCCATACGTACTGTAT+AGG | 0.434125 | tig0023079:+44460 | None:intergenic |
| TGAAAACAGAAACAGAAGAT+TGG | 0.434785 | tig0023079:-41011 | Msa1404680:intron |
| CTTGAACTCCTTCACTTGGT+TGG | 0.437650 | tig0023079:+40831 | None:intergenic |
| GAGAAGATAATTGTTCTTGA+AGG | 0.443920 | tig0023079:+45269 | None:intergenic |
| TCTACATGGACAGAAAACTA+TGG | 0.449195 | tig0023079:-42883 | Msa1404680:CDS |
| AAACCTGCAGCAGCGTCAAA+GGG | 0.457365 | tig0023079:+42934 | None:intergenic |
| GGGATCTAAGTTTGTCTCGT+TGG | 0.458723 | tig0023079:-40662 | Msa1404680:three_prime_UTR |
| ATGGTGCTCCTGGCTTCCTC+AGG | 0.461583 | tig0023079:+42018 | None:intergenic |
| AGTACGTATGGATATGGAAA+AGG | 0.464152 | tig0023079:-44453 | Msa1404680:CDS |
| GTATGGCTATAGCTGGTGAT+TGG | 0.466459 | tig0023079:-44506 | Msa1404680:intron |
| CTGTATAGGTAGTAAACATA+TGG | 0.466801 | tig0023079:+44474 | None:intergenic |
| TTTGAGTGTGAAGGTAAATC+TGG | 0.466842 | tig0023079:-40860 | Msa1404680:three_prime_UTR |
| TCATCATTTGGGCTTAATGC+AGG | 0.467424 | tig0023079:+42444 | None:intergenic |
| GTACGTATGGATATGGAAAA+GGG | 0.469222 | tig0023079:-44452 | Msa1404680:CDS |
| GAAATGTTGTAAAATTGGAT+TGG | 0.471122 | tig0023079:+45418 | None:intergenic |
| ACAAAATTAAGACAATTAAA+GGG | 0.472104 | tig0023079:+40625 | None:intergenic |
| GGTGATGCAGCTTGCAATGT+AGG | 0.472241 | tig0023079:+44223 | None:intergenic |
| TTGATGTTGGGCCGTATCTT+GGG | 0.472991 | tig0023079:-44176 | Msa1404680:CDS |
| TTCTTCTACCTTGTCTTCGG+TGG | 0.475762 | tig0023079:-45369 | Msa1404680:CDS |
| GCTAGTTGCTGAGCATTTCA+AGG | 0.477810 | tig0023079:-44111 | Msa1404680:intron |
| AAAACCTGCAGCAGCGTCAA+AGG | 0.480550 | tig0023079:+42933 | None:intergenic |
| CAATACAGAGTCTTGATGTT+GGG | 0.480967 | tig0023079:-44188 | Msa1404680:CDS |
| GTTCAAGCTAAAAGGATATG+TGG | 0.483906 | tig0023079:-40815 | Msa1404680:three_prime_UTR |
| GGTGGTGGTCTCTCATTCGC+CGG | 0.485040 | tig0023079:-42129 | Msa1404680:CDS |
| GGGTGAAGAAGGTTATATAG+TGG | 0.489029 | tig0023079:+45538 | None:intergenic |
| CCAATTTAGGGGTGCTGCGG+TGG | 0.489380 | tig0023079:-42830 | Msa1404680:CDS |
| ATAGCATACAGTGGTAAGAA+TGG | 0.492139 | tig0023079:+42269 | None:intergenic |
| AATACATTCCTGAGGAAGCC+AGG | 0.496275 | tig0023079:-42026 | Msa1404680:CDS |
| TAGCATACAGTGGTAAGAAT+GGG | 0.504293 | tig0023079:+42270 | None:intergenic |
| TTAGCTTGAACTCCTTCACT+TGG | 0.505499 | tig0023079:+40827 | None:intergenic |
| AAGGCGACTGCTCGTGATTG+CGG | 0.515226 | tig0023079:-41537 | Msa1404680:CDS |
| ACCTTCAAAGAGAGACTGTA+TGG | 0.515882 | tig0023079:+42497 | None:intergenic |
| TTTGTAAGATTTGTGTGAGA+TGG | 0.521279 | tig0023079:+45466 | None:intergenic |
| GTGGTGGTCTCTCATTCGCC+GGG | 0.524709 | tig0023079:-42128 | Msa1404680:CDS |
| TCAATACAGAGTCTTGATGT+TGG | 0.527647 | tig0023079:-44189 | Msa1404680:CDS |
| AAATGTCCTTGTTGATACAT+TGG | 0.532054 | tig0023079:-42974 | Msa1404680:CDS |
| TACATTGGCTCTTGGACCAG+TGG | 0.533547 | tig0023079:-42959 | Msa1404680:CDS |
| ATAGCTGGTGATTGGTTACA+AGG | 0.536193 | tig0023079:-44498 | Msa1404680:intron |
| ACCCAAAAGCTGAATGCACC+CGG | 0.540450 | tig0023079:+42110 | None:intergenic |
| ATCAGCTACGACGAGTGCGT+TGG | 0.544552 | tig0023079:+45580 | None:intergenic |
| AACAGAAGATTGGCAACTCA+AGG | 0.548096 | tig0023079:-41001 | Msa1404680:CDS |
| CCTACTAAAGCAACAGGTGG+TGG | 0.548441 | tig0023079:-42144 | Msa1404680:CDS |
| TGGCAATGCCACCCAAGATA+CGG | 0.550294 | tig0023079:+44165 | None:intergenic |
| TACTACCTATACAGTACGTA+TGG | 0.551044 | tig0023079:-44465 | Msa1404680:CDS |
| AGATTGGCAACTCAAGGAAA+GGG | 0.555844 | tig0023079:-40995 | Msa1404680:CDS |
| GGATATGGAAAAGGGGAGAT+CGG | 0.557120 | tig0023079:-44444 | Msa1404680:CDS |
| GGCTTAATGCAGGAGTCCAT+AGG | 0.558342 | tig0023079:+42454 | None:intergenic |
| AAGATTGGCAACTCAAGGAA+AGG | 0.560058 | tig0023079:-40996 | Msa1404680:CDS |
| CAGATTCAATGGCTCTGACT+CGG | 0.562995 | tig0023079:+40969 | None:intergenic |
| TTCAAGCTAAAAGGATATGT+GGG | 0.564130 | tig0023079:-40814 | Msa1404680:three_prime_UTR |
| TGATCGTGATATTATCTACA+TGG | 0.566672 | tig0023079:-42897 | Msa1404680:CDS |
| TGATAGGAAGAGTTAAACTC+AGG | 0.566700 | tig0023079:-45678 | None:intergenic |
| GATCTCATCTTCATAATGGA+TGG | 0.570928 | tig0023079:+42051 | None:intergenic |
| TGCCAAACATAACAGTGATA+GGG | 0.571327 | tig0023079:+41597 | None:intergenic |
| GTAAGATACTAGCCATGAAG+AGG | 0.572565 | tig0023079:+41561 | None:intergenic |
| CACACTCTGCAAGAGAGACT+GGG | 0.572731 | tig0023079:-45443 | Msa1404680:five_prime_UTR |
| TGCATTAATTAAATGTAGAG+TGG | 0.572950 | tig0023079:+40588 | None:intergenic |
| TGCCGAAAATAGAAGTGAAG+TGG | 0.574265 | tig0023079:+44145 | None:intergenic |
| GATGTTATTCGGAACAATTG+TGG | 0.575416 | tig0023079:-44391 | Msa1404680:CDS |
| CGGCTAATCCACCGAAGACA+AGG | 0.577466 | tig0023079:+45361 | None:intergenic |
| AACATCAAGACTCTGTATTG+AGG | 0.584283 | tig0023079:+44191 | None:intergenic |
| AGCTTGCTTGCCCAATTTAG+GGG | 0.587066 | tig0023079:-42841 | Msa1404680:CDS |
| ACCTGCAGCAGCGTCAAAGG+GGG | 0.590199 | tig0023079:+42936 | None:intergenic |
| AAGAACTATACCAGAAGCAA+TGG | 0.596618 | tig0023079:+42807 | None:intergenic |
| TCTGTATTGAGGAGAATGCT+TGG | 0.601257 | tig0023079:+44202 | None:intergenic |
| GCTATCATTAACATTCTCGA+AGG | 0.610234 | tig0023079:-43046 | Msa1404680:CDS |
| TACTCATATCAAGTTTGATG+AGG | 0.610558 | tig0023079:+40542 | None:intergenic |
| GATAGGAAGAGTTAAACTCA+GGG | 0.611651 | tig0023079:-45677 | None:intergenic |
| AGAGGGGCTTTGATCAGCAA+TGG | 0.613910 | tig0023079:-43068 | Msa1404680:CDS |
| TGCCCAATTTAGGGGTGCTG+CGG | 0.615185 | tig0023079:-42833 | Msa1404680:CDS |
| TTCATACCACTCGTGTCTCG+TGG | 0.619210 | tig0023079:-45491 | Msa1404680:five_prime_UTR |
| ACTCATATCAAGTTTGATGA+GGG | 0.621077 | tig0023079:+40543 | None:intergenic |
| GGTGCCCACCAACCAAGTGA+AGG | 0.638815 | tig0023079:-40839 | Msa1404680:three_prime_UTR |
| AACCTGCAGCAGCGTCAAAG+GGG | 0.643247 | tig0023079:+42935 | None:intergenic |
| GGCTCGTTCATCATTCCGTG+TGG | 0.650417 | tig0023079:-42343 | Msa1404680:CDS |
| TACGTATGGATATGGAAAAG+GGG | 0.653213 | tig0023079:-44451 | Msa1404680:CDS |
| ACTACGCAATTTGAGTGTGA+AGG | 0.660789 | tig0023079:-40869 | Msa1404680:three_prime_UTR |
| CAAGAGCCAATGTATCAACA+AGG | 0.662983 | tig0023079:+42968 | None:intergenic |
| ATGTTGGGCCGTATCTTGGG+TGG | 0.669526 | tig0023079:-44173 | Msa1404680:CDS |
| TCATGGCTAGTATCTTACAA+AGG | 0.673331 | tig0023079:-41556 | Msa1404680:CDS |
| CTCGAGAACAGCAACAACAG+CGG | 0.691907 | tig0023079:+45341 | None:intergenic |
| GAGATCTCAATACATTCCTG+AGG | 0.692563 | tig0023079:-42034 | Msa1404680:CDS |
| ATGGTACCACGAGACACGAG+TGG | 0.702335 | tig0023079:+45485 | None:intergenic |
| GTTCCTACTAAAGCAACAGG+TGG | 0.707303 | tig0023079:-42147 | Msa1404680:CDS |
| AGGAGTCCATAGGAACACAA+AGG | 0.732126 | tig0023079:+42464 | None:intergenic |
| TCTGCATGTAGCTCTCCACA+CGG | 0.735568 | tig0023079:+42328 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTGAAATTGAATT+TGG | - | tig0023079:41146-41165 | Msa1404680:intron | 10.0% |
| !! | TATATGATTAACATATTTAA+AGG | + | tig0023079:42219-42238 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTTATATGAAAAT+GGG | + | tig0023079:45127-45146 | None:intergenic | 10.0% |
| !!! | TTTTTTGTTTTATATGAAAA+TGG | + | tig0023079:45128-45147 | None:intergenic | 10.0% |
| !! | TATTCAAATTTGAATAATGT+TGG | - | tig0023079:41435-41454 | Msa1404680:intron | 15.0% |
| !! | ATCAAATCAACTATATTTAA+AGG | + | tig0023079:41508-41527 | None:intergenic | 15.0% |
| !! | AATATGTTAATCATATATGA+AGG | - | tig0023079:42222-42241 | Msa1404680:intron | 15.0% |
| !! | ACTATTATATAAGACATTTA+CGG | + | tig0023079:42248-42267 | None:intergenic | 15.0% |
| !! | AAATTTAGTAACTATTAACT+AGG | - | tig0023079:42514-42533 | Msa1404680:CDS | 15.0% |
| !! | TAAAAAATGATAACAGAATA+AGG | + | tig0023079:43577-43596 | None:intergenic | 15.0% |
| !!! | TTGTTTATTTTTTTATGTAC+AGG | - | tig0023079:44564-44583 | Msa1404680:intron | 15.0% |
| !! | ACAAAATTAAGACAATTAAA+GGG | + | tig0023079:45572-45591 | None:intergenic | 15.0% |
| !! | TACAAAATTAAGACAATTAA+AGG | + | tig0023079:45573-45592 | None:intergenic | 15.0% |
| !! | AAGAAATAATAAACAGAAGA+TGG | + | tig0023079:41065-41084 | None:intergenic | 20.0% |
| !!! | TTTTATGATTTTCTTAGCTT+TGG | - | tig0023079:41237-41256 | Msa1404680:intron | 20.0% |
| !! | AAATTTGAATAATGTTGGAT+GGG | - | tig0023079:41440-41459 | Msa1404680:intron | 20.0% |
| !!! | TTAGTTTTAGTGATCTTAAT+AGG | - | tig0023079:41655-41674 | Msa1404680:intron | 20.0% |
| !! | ACTTCTTAATATGAAAATCA+GGG | - | tig0023079:41915-41934 | Msa1404680:intron | 20.0% |
| !!! | CTTTATTATCAAGTTTTATC+TGG | - | tig0023079:42140-42159 | Msa1404680:CDS | 20.0% |
| !!! | ACAACTACAAATTTTGAAAA+TGG | - | tig0023079:42449-42468 | Msa1404680:CDS | 20.0% |
| !! | TTATGTAAATATCAACTATG+TGG | - | tig0023079:42558-42577 | Msa1404680:intron | 20.0% |
| !! | TTCATTTAACGAAACAATTA+AGG | - | tig0023079:42702-42721 | Msa1404680:intron | 20.0% |
| !! | TATGATAAATTTATAAACCC+CGG | + | tig0023079:42918-42937 | None:intergenic | 20.0% |
| !! | AAGTACAAAATGTAAAATGA+AGG | + | tig0023079:43074-43093 | None:intergenic | 20.0% |
| !! | ATTACTATGAATTTGAACTT+TGG | - | tig0023079:43447-43466 | Msa1404680:intron | 20.0% |
| !! | AATTAGTGCAATATAAAAGT+TGG | + | tig0023079:44355-44374 | None:intergenic | 20.0% |
| !! | GTTTGTAAAGAAAATGTATT+TGG | + | tig0023079:45097-45116 | None:intergenic | 20.0% |
| !! | AAAACAAAAAAGAAAGTTCT+TGG | - | tig0023079:45137-45156 | Msa1404680:intron | 20.0% |
| !! | TTAATCAATTACAGATTCAA+TGG | + | tig0023079:45239-45258 | None:intergenic | 20.0% |
| !!! | ATCTGTAATTGATTAAGTTT+TGG | - | tig0023079:45243-45262 | Msa1404680:intron | 20.0% |
| !!! | TCTGTAATTGATTAAGTTTT+GGG | - | tig0023079:45244-45263 | Msa1404680:intron | 20.0% |
| !!! | TTACTTATGTCAATTCTTTT+GGG | - | tig0023079:45505-45524 | Msa1404680:five_prime_UTR | 20.0% |
| !!! | ATTACCTTTGCTTTTTTTGT+GGG | + | tig0023079:40574-40593 | None:intergenic | 25.0% |
| !!! | AATTACCTTTGCTTTTTTTG+TGG | + | tig0023079:40575-40594 | None:intergenic | 25.0% |
| !!! | TTATATAGTGGTTTTGTGAT+GGG | + | tig0023079:40647-40666 | None:intergenic | 25.0% |
| ! | GAAATGTTGTAAAATTGGAT+TGG | + | tig0023079:40779-40798 | None:intergenic | 25.0% |
| ! | ACAGAGAAATGTTGTAAAAT+TGG | + | tig0023079:40784-40803 | None:intergenic | 25.0% |
| ! | TGAAAACGATGTAATTGAAA+TGG | - | tig0023079:41171-41190 | Msa1404680:intron | 25.0% |
| !!! | ATAGTAGTGATGTGTTTTTT+TGG | - | tig0023079:41269-41288 | Msa1404680:intron | 25.0% |
| ! | CAAATTTGAATAATGTTGGA+TGG | - | tig0023079:41439-41458 | Msa1404680:intron | 25.0% |
| !!! | TAATAGGTTTCGTTTTTGTA+TGG | - | tig0023079:41671-41690 | Msa1404680:intron | 25.0% |
| ! | GACTTCTTAATATGAAAATC+AGG | - | tig0023079:41914-41933 | Msa1404680:intron | 25.0% |
| ! | CTTCTTAATATGAAAATCAG+GGG | - | tig0023079:41916-41935 | Msa1404680:intron | 25.0% |
| !!! | TTTGAAAATGGTTTTAGATG+TGG | - | tig0023079:42461-42480 | Msa1404680:CDS | 25.0% |
| !!! | ATATCTTCATTGCTTGTTTT+TGG | - | tig0023079:42760-42779 | Msa1404680:intron | 25.0% |
| !!! | TTGGTTTTCATATCCAATTT+AGG | - | tig0023079:42779-42798 | Msa1404680:intron | 25.0% |
| !! | TGGTTTTCATATCCAATTTA+GGG | - | tig0023079:42780-42799 | Msa1404680:intron | 25.0% |
| !! | ATTTTACAATATCTTCCAAG+TGG | - | tig0023079:42962-42981 | Msa1404680:CDS | 25.0% |
| ! | TAAGGGTAAAAATTGTATTG+TGG | + | tig0023079:43010-43029 | None:intergenic | 25.0% |
| ! | AACAATGACAAAACTATCTA+AGG | + | tig0023079:43414-43433 | None:intergenic | 25.0% |
| !! | TTTTGTCATTGTTTATACAG+TGG | - | tig0023079:43421-43440 | Msa1404680:intron | 25.0% |
| !!! | GGCCATTATTTTATTTTTTC+CGG | - | tig0023079:43511-43530 | Msa1404680:intron | 25.0% |
| !!! | GCCATTATTTTATTTTTTCC+GGG | - | tig0023079:43512-43531 | Msa1404680:intron | 25.0% |
| ! | TCCCGGAAAAAATAAAATAA+TGG | + | tig0023079:43516-43535 | None:intergenic | 25.0% |
| ! | TGTTGCAAAAATAAAACCAT+GGG | + | tig0023079:43784-43803 | None:intergenic | 25.0% |
| ! | ATGTTGCAAAAATAAAACCA+TGG | + | tig0023079:43785-43804 | None:intergenic | 25.0% |
| ! | ATTCATGTTATCTTCAATGT+TGG | - | tig0023079:43803-43822 | Msa1404680:intron | 25.0% |
| ! | TTCATGTTATCTTCAATGTT+GGG | - | tig0023079:43804-43823 | Msa1404680:intron | 25.0% |
| !! | ATAATTTGACTTTGTTACTG+TGG | - | tig0023079:44010-44029 | Msa1404680:intron | 25.0% |
| !!! | TCAAAAGCATTATATCTAAG+CGG | + | tig0023079:44274-44293 | None:intergenic | 25.0% |
| ! | TTGCAAAAAGCAAAAGATAT+AGG | - | tig0023079:44461-44480 | Msa1404680:CDS | 25.0% |
| !!! | TAATTGATTAAGTTTTGGGA+AGG | - | tig0023079:45248-45267 | Msa1404680:intron | 25.0% |
| !!! | ATTGCCTATTATTTTACTTG+AGG | - | tig0023079:45456-45475 | Msa1404680:five_prime_UTR | 25.0% |
| ! | TTCTCCTCAAGTAAAATAAT+AGG | + | tig0023079:45463-45482 | None:intergenic | 25.0% |
| !! | CTTACTTATGTCAATTCTTT+TGG | - | tig0023079:45504-45523 | Msa1404680:five_prime_UTR | 25.0% |
| !! | TACTTATGTCAATTCTTTTG+GGG | - | tig0023079:45506-45525 | Msa1404680:five_prime_UTR | 25.0% |
| ! | TGCATTAATTAAATGTAGAG+TGG | + | tig0023079:45609-45628 | None:intergenic | 25.0% |
| TTTACCCACAAAAAAAGCAA+AGG | - | tig0023079:40567-40586 | Msa1404680:three_prime_UTR | 30.0% | |
| !!! | GTTATATAGTGGTTTTGTGA+TGG | + | tig0023079:40648-40667 | None:intergenic | 30.0% |
| TTTGTAAGATTTGTGTGAGA+TGG | + | tig0023079:40731-40750 | None:intergenic | 30.0% | |
| GAGAAGATAATTGTTCTTGA+AGG | + | tig0023079:40928-40947 | None:intergenic | 30.0% | |
| TCTCATTTATTCTCTCATGA+TGG | - | tig0023079:40944-40963 | Msa1404680:three_prime_UTR | 30.0% | |
| CTCATTTATTCTCTCATGAT+GGG | - | tig0023079:40945-40964 | Msa1404680:three_prime_UTR | 30.0% | |
| GAGTAAAAATCACAACTTCA+AGG | + | tig0023079:41297-41316 | None:intergenic | 30.0% | |
| CTGTATAGGTAGTAAACATA+TGG | + | tig0023079:41723-41742 | None:intergenic | 30.0% | |
| ATGTTATTCGGAACAATTGT+GGG | - | tig0023079:41804-41823 | Msa1404680:intron | 30.0% | |
| AAAATGCTACGACATATGTA+TGG | + | tig0023079:41883-41902 | None:intergenic | 30.0% | |
| TATGATTACTTTATACACGC+AGG | - | tig0023079:42164-42183 | Msa1404680:intron | 30.0% | |
| TAGTTATTATAAGTACCACG+AGG | - | tig0023079:42267-42286 | Msa1404680:intron | 30.0% | |
| AGATGTGGATCATTATGTTT+AGG | - | tig0023079:42476-42495 | Msa1404680:CDS | 30.0% | |
| AAAGCAGAAGAAACAACTAA+TGG | + | tig0023079:42807-42826 | None:intergenic | 30.0% | |
| !! | TTCCAAAAGATGTTGATTTC+CGG | - | tig0023079:42896-42915 | Msa1404680:CDS | 30.0% |
| ! | GCATGTTTATCTTGTTTAGA+GGG | + | tig0023079:42942-42961 | None:intergenic | 30.0% |
| ! | TGCATGTTTATCTTGTTTAG+AGG | + | tig0023079:42943-42962 | None:intergenic | 30.0% |
| TTACCCTTAAAATCTGACAA+AGG | - | tig0023079:43021-43040 | Msa1404680:CDS | 30.0% | |
| TACCCTTAAAATCTGACAAA+GGG | - | tig0023079:43022-43041 | Msa1404680:CDS | 30.0% | |
| ! | AACCCTTTGTCAGATTTTAA+GGG | + | tig0023079:43027-43046 | None:intergenic | 30.0% |
| ! | AAACCCTTTGTCAGATTTTA+AGG | + | tig0023079:43028-43047 | None:intergenic | 30.0% |
| AAGGCTATATTTCTTGGAAA+TGG | - | tig0023079:43167-43186 | Msa1404680:intron | 30.0% | |
| AAATGTCCTTGTTGATACAT+TGG | - | tig0023079:43220-43239 | Msa1404680:intron | 30.0% | |
| TGATCGTGATATTATCTACA+TGG | - | tig0023079:43297-43316 | Msa1404680:intron | 30.0% | |
| AATTCATGAACATCTGTACT+AGG | + | tig0023079:43628-43647 | None:intergenic | 30.0% | |
| ! | GATGAAAAAATAGCTTTGCT+TGG | - | tig0023079:43672-43691 | Msa1404680:intron | 30.0% |
| TTGCAAAAATAAAACCATGG+GGG | + | tig0023079:43782-43801 | None:intergenic | 30.0% | |
| GTTGCAAAAATAAAACCATG+GGG | + | tig0023079:43783-43802 | None:intergenic | 30.0% | |
| ATGTAAATCACAGTACCAAT+GGG | + | tig0023079:43974-43993 | None:intergenic | 30.0% | |
| !! | TGTACTTTTGAAAGTTGTGT+TGG | - | tig0023079:44110-44129 | Msa1404680:intron | 30.0% |
| TTGAGATCTCATCTTCATAA+TGG | + | tig0023079:44150-44169 | None:intergenic | 30.0% | |
| ! | TAGATTGTTTAAGATCAAGC+TGG | + | tig0023079:44331-44350 | None:intergenic | 30.0% |
| ATATTGCACTAATTTGAACC+TGG | - | tig0023079:44361-44380 | Msa1404680:intron | 30.0% | |
| AAGAAAGGGTTTATAATTCC+AGG | + | tig0023079:44382-44401 | None:intergenic | 30.0% | |
| CAGACATCGTATTTAAGAAA+GGG | + | tig0023079:44396-44415 | None:intergenic | 30.0% | |
| CTTTCTTAAATACGATGTCT+GGG | - | tig0023079:44395-44414 | Msa1404680:CDS | 30.0% | |
| GTAGAATTCAACAAGATAAC+TGG | + | tig0023079:44425-44444 | None:intergenic | 30.0% | |
| !!! | TTTTGCTTTTTGCAAGAAAG+GGG | + | tig0023079:44456-44475 | None:intergenic | 30.0% |
| !!! | CTTTTGCTTTTTGCAAGAAA+GGG | + | tig0023079:44457-44476 | None:intergenic | 30.0% |
| !!! | TCTTTTGCTTTTTGCAAGAA+AGG | + | tig0023079:44458-44477 | None:intergenic | 30.0% |
| !! | AATAAGTTTTGATCCCATTG+CGG | + | tig0023079:44736-44755 | None:intergenic | 30.0% |
| GTTGATATGCCAGATAATAT+AGG | + | tig0023079:45035-45054 | None:intergenic | 30.0% | |
| TGAAAACAGAAACAGAAGAT+TGG | - | tig0023079:45183-45202 | Msa1404680:intron | 30.0% | |
| TTCAAGCTAAAAGGATATGT+GGG | - | tig0023079:45380-45399 | Msa1404680:CDS | 30.0% | |
| AGTAAGAACTACTACCAAAA+TGG | + | tig0023079:45490-45509 | None:intergenic | 30.0% | |
| ! | ACTTATGTCAATTCTTTTGG+GGG | - | tig0023079:45507-45526 | Msa1404680:five_prime_UTR | 30.0% |
| ACTCATATCAAGTTTGATGA+GGG | + | tig0023079:45654-45673 | None:intergenic | 30.0% | |
| TACTCATATCAAGTTTGATG+AGG | + | tig0023079:45655-45674 | None:intergenic | 30.0% | |
| TTGTTCTTCTACCTTGTCTT+CGG | - | tig0023079:40822-40841 | Msa1404680:three_prime_UTR | 35.0% | |
| !!! | GCGTGATTTTGAAATCTGAA+TGG | - | tig0023079:41200-41219 | Msa1404680:intron | 35.0% |
| TACTACCTATACAGTACGTA+TGG | - | tig0023079:41729-41748 | Msa1404680:intron | 35.0% | |
| CATATCCATACGTACTGTAT+AGG | + | tig0023079:41737-41756 | None:intergenic | 35.0% | |
| CTATACAGTACGTATGGATA+TGG | - | tig0023079:41735-41754 | Msa1404680:intron | 35.0% | |
| AGTACGTATGGATATGGAAA+AGG | - | tig0023079:41741-41760 | Msa1404680:intron | 35.0% | |
| GTACGTATGGATATGGAAAA+GGG | - | tig0023079:41742-41761 | Msa1404680:intron | 35.0% | |
| TACGTATGGATATGGAAAAG+GGG | - | tig0023079:41743-41762 | Msa1404680:intron | 35.0% | |
| AACTCTTCATTGCTGGATTT+GGG | - | tig0023079:41775-41794 | Msa1404680:intron | 35.0% | |
| TTTGGGTCTTCGATGTTATT+CGG | - | tig0023079:41792-41811 | Msa1404680:intron | 35.0% | |
| GATGTTATTCGGAACAATTG+TGG | - | tig0023079:41803-41822 | Msa1404680:intron | 35.0% | |
| TTAATATGAAAATCAGGGGC+CGG | - | tig0023079:41920-41939 | Msa1404680:intron | 35.0% | |
| AACATCAAGACTCTGTATTG+AGG | + | tig0023079:42006-42025 | None:intergenic | 35.0% | |
| TCAATACAGAGTCTTGATGT+TGG | - | tig0023079:42005-42024 | Msa1404680:CDS | 35.0% | |
| CAATACAGAGTCTTGATGTT+GGG | - | tig0023079:42006-42025 | Msa1404680:CDS | 35.0% | |
| !! | TGCCACTTCACTTCTATTTT+CGG | - | tig0023079:42047-42066 | Msa1404680:CDS | 35.0% |
| !! | CAGGAAGTGCTATAATTTGA+AGG | - | tig0023079:42183-42202 | Msa1404680:intron | 35.0% |
| ! | GAAGTGCTATAATTTGAAGG+TGG | - | tig0023079:42186-42205 | Msa1404680:intron | 35.0% |
| ACTAAATTTATGCAACACGC+AGG | + | tig0023079:42503-42522 | None:intergenic | 35.0% | |
| ATATCAACTATGTGGTGTAG+TGG | - | tig0023079:42566-42585 | Msa1404680:intron | 35.0% | |
| ACAAACACACTAGTTGCTAT+CGG | - | tig0023079:42645-42664 | Msa1404680:intron | 35.0% | |
| TAACGAAACAATTAAGGCAG+AGG | - | tig0023079:42708-42727 | Msa1404680:intron | 35.0% | |
| ! | ACAACTAATGGACCCTAAAT+TGG | + | tig0023079:42795-42814 | None:intergenic | 35.0% |
| !! | TCCAAAAGATGTTGATTTCC+GGG | - | tig0023079:42897-42916 | Msa1404680:CDS | 35.0% |
| GTGAGCAAAAATCACTTTGT+TGG | + | tig0023079:42988-43007 | None:intergenic | 35.0% | |
| AAATGAAGGAATCAAGACGA+AGG | + | tig0023079:43060-43079 | None:intergenic | 35.0% | |
| TTTCCACATGAATCTATCAG+AGG | - | tig0023079:43108-43127 | Msa1404680:intron | 35.0% | |
| TTCCACATGAATCTATCAGA+GGG | - | tig0023079:43109-43128 | Msa1404680:intron | 35.0% | |
| GCTATCATTAACATTCTCGA+AGG | - | tig0023079:43148-43167 | Msa1404680:intron | 35.0% | |
| TTCTCGAAGGCTATATTTCT+TGG | - | tig0023079:43161-43180 | Msa1404680:intron | 35.0% | |
| !! | GTCTTGTTGCCATATTTTCT+GGG | - | tig0023079:43189-43208 | Msa1404680:intron | 35.0% |
| TCTACATGGACAGAAAACTA+TGG | - | tig0023079:43311-43330 | Msa1404680:intron | 35.0% | |
| AAGAACTATACCAGAAGCAA+TGG | + | tig0023079:43390-43409 | None:intergenic | 35.0% | |
| !! | ACTTTGGAACTCTTAATGTG+TGG | - | tig0023079:43463-43482 | Msa1404680:intron | 35.0% |
| CATTAATCTACCTAACGAGT+GGG | - | tig0023079:43486-43505 | Msa1404680:intron | 35.0% | |
| ATTTCAACATACATCACTCC+CGG | + | tig0023079:43533-43552 | None:intergenic | 35.0% | |
| ! | TTCATCTGAAACGCAATGAA+TGG | + | tig0023079:43658-43677 | None:intergenic | 35.0% |
| TGTATACCTTTGTGTTCCTA+TGG | - | tig0023079:43724-43743 | Msa1404680:intron | 35.0% | |
| TAGCATACAGTGGTAAGAAT+GGG | + | tig0023079:43927-43946 | None:intergenic | 35.0% | |
| ATAGCATACAGTGGTAAGAA+TGG | + | tig0023079:43928-43947 | None:intergenic | 35.0% | |
| ATTGGAAGAATAGCATACAG+TGG | + | tig0023079:43937-43956 | None:intergenic | 35.0% | |
| GATGTAAATCACAGTACCAA+TGG | + | tig0023079:43975-43994 | None:intergenic | 35.0% | |
| ! | AAAGTTGTGTTGGCATATTC+TGG | - | tig0023079:44120-44139 | Msa1404680:CDS | 35.0% |
| ! | GATCTCATCTTCATAATGGA+TGG | + | tig0023079:44146-44165 | None:intergenic | 35.0% |
| AATGCGGAAAAAGTTCATGA+TGG | + | tig0023079:44198-44217 | None:intergenic | 35.0% | |
| CAAAAATGTTCAGAGGAATG+CGG | + | tig0023079:44214-44233 | None:intergenic | 35.0% | |
| ACACACACAAAAATGTTCAG+AGG | + | tig0023079:44221-44240 | None:intergenic | 35.0% | |
| AAGCATTATATCTAAGCGGT+AGG | + | tig0023079:44270-44289 | None:intergenic | 35.0% | |
| CCAGACATCGTATTTAAGAA+AGG | + | tig0023079:44397-44416 | None:intergenic | 35.0% | |
| CCTTTCTTAAATACGATGTC+TGG | - | tig0023079:44394-44413 | Msa1404680:CDS | 35.0% | |
| TTCCCTATCACTGTTATGTT+TGG | - | tig0023079:44595-44614 | Msa1404680:intron | 35.0% | |
| TGCCAAACATAACAGTGATA+GGG | + | tig0023079:44600-44619 | None:intergenic | 35.0% | |
| ATGCCAAACATAACAGTGAT+AGG | + | tig0023079:44601-44620 | None:intergenic | 35.0% | |
| TCATGGCTAGTATCTTACAA+AGG | - | tig0023079:44638-44657 | Msa1404680:intron | 35.0% | |
| ATGTTGAATTTGTACCGCAA+TGG | - | tig0023079:44719-44738 | Msa1404680:intron | 35.0% | |
| TGTTGAATTTGTACCGCAAT+GGG | - | tig0023079:44720-44739 | Msa1404680:intron | 35.0% | |
| TATACACTACACAAAGCCAA+AGG | + | tig0023079:44839-44858 | None:intergenic | 35.0% | |
| AGGCAGGATATATAACACAA+GGG | + | tig0023079:44864-44883 | None:intergenic | 35.0% | |
| GATCTACCAAAAATAGCTTG+AGG | + | tig0023079:44884-44903 | None:intergenic | 35.0% | |
| ! | CATCTAGCTTGAAACATGTT+TGG | + | tig0023079:44925-44944 | None:intergenic | 35.0% |
| ATTGCCCACTTTGGTTAATT+GGG | - | tig0023079:44945-44964 | Msa1404680:intron | 35.0% | |
| TGCCTTTAAGTAAAAGTCCA+TGG | - | tig0023079:44979-44998 | Msa1404680:intron | 35.0% | |
| GCCTTTAAGTAAAAGTCCAT+GGG | - | tig0023079:44980-44999 | Msa1404680:intron | 35.0% | |
| ! | ACCCATGGACTTTTACTTAA+AGG | + | tig0023079:44984-45003 | None:intergenic | 35.0% |
| TATGCCAGATAATATAGGCA+GGG | + | tig0023079:45030-45049 | None:intergenic | 35.0% | |
| ATATGCCAGATAATATAGGC+AGG | + | tig0023079:45031-45050 | None:intergenic | 35.0% | |
| TTATCTGGCATATCAACACA+TGG | - | tig0023079:45038-45057 | Msa1404680:intron | 35.0% | |
| GACAGAAACTGCATTATGTA+AGG | + | tig0023079:45295-45314 | None:intergenic | 35.0% | |
| TTTGAGTGTGAAGGTAAATC+TGG | - | tig0023079:45334-45353 | Msa1404680:CDS | 35.0% | |
| GTTCAAGCTAAAAGGATATG+TGG | - | tig0023079:45379-45398 | Msa1404680:CDS | 35.0% | |
| ! | TTGAGGAGAAATCTCCATTT+TGG | - | tig0023079:45473-45492 | Msa1404680:five_prime_UTR | 35.0% |
| ! | CTTATGTCAATTCTTTTGGG+GGG | - | tig0023079:45508-45527 | Msa1404680:five_prime_UTR | 35.0% |
| GGGTGAAGAAGGTTATATAG+TGG | + | tig0023079:40659-40678 | None:intergenic | 40.0% | |
| AGATGAAGAGAGAGAGAGAA+GGG | + | tig0023079:40679-40698 | None:intergenic | 40.0% | |
| TAGATGAAGAGAGAGAGAGA+AGG | + | tig0023079:40680-40699 | None:intergenic | 40.0% | |
| TCTCTGTTAACTCGCGATAA+TGG | - | tig0023079:40797-40816 | Msa1404680:three_prime_UTR | 40.0% | |
| GCTTTCGATGACATTGTTGT+TGG | - | tig0023079:41588-41607 | Msa1404680:CDS | 40.0% | |
| ! | CGTTTTTGTATGGCTATAGC+TGG | - | tig0023079:41681-41700 | Msa1404680:intron | 40.0% |
| ! | ATAGCTGGTGATTGGTTACA+AGG | - | tig0023079:41696-41715 | Msa1404680:intron | 40.0% |
| CAACTCTTCATTGCTGGATT+TGG | - | tig0023079:41774-41793 | Msa1404680:intron | 40.0% | |
| TCTGTATTGAGGAGAATGCT+TGG | + | tig0023079:41995-42014 | None:intergenic | 40.0% | |
| TGCCGAAAATAGAAGTGAAG+TGG | + | tig0023079:42052-42071 | None:intergenic | 40.0% | |
| ! | TATTTTCGGCATTTGAGTCG+TGG | - | tig0023079:42061-42080 | Msa1404680:CDS | 40.0% |
| ! | CAATACAGTTTGATGGCATC+TGG | - | tig0023079:42731-42750 | Msa1404680:intron | 40.0% |
| ! | TTGGAATCAACCTAGTTTGC+AGG | + | tig0023079:42882-42901 | None:intergenic | 40.0% |
| !! | CCAAAAGATGTTGATTTCCG+GGG | - | tig0023079:42898-42917 | Msa1404680:CDS | 40.0% |
| AAATCACTTTGTTGGCCACT+TGG | + | tig0023079:42980-42999 | None:intergenic | 40.0% | |
| TCCACATGAATCTATCAGAG+GGG | - | tig0023079:43110-43129 | Msa1404680:intron | 40.0% | |
| !!! | GGTCTTGTTGCCATATTTTC+TGG | - | tig0023079:43188-43207 | Msa1404680:intron | 40.0% |
| TCCAAACAGCCCAGAAAATA+TGG | + | tig0023079:43201-43220 | None:intergenic | 40.0% | |
| CAAGAGCCAATGTATCAACA+AGG | + | tig0023079:43229-43248 | None:intergenic | 40.0% | |
| !! | CTTGTTGATACATTGGCTCT+TGG | - | tig0023079:43227-43246 | Msa1404680:intron | 40.0% |
| ! | GCTGCAGGTTTTCTTACAAT+TGG | - | tig0023079:43272-43291 | Msa1404680:intron | 40.0% |
| GCATTAATCTACCTAACGAG+TGG | - | tig0023079:43485-43504 | Msa1404680:intron | 40.0% | |
| ACCTTCAAAGAGAGACTGTA+TGG | + | tig0023079:43700-43719 | None:intergenic | 40.0% | |
| TCATCATTTGGGCTTAATGC+AGG | + | tig0023079:43753-43772 | None:intergenic | 40.0% | |
| TAAATCACAGTACCAATGGG+TGG | + | tig0023079:43971-43990 | None:intergenic | 40.0% | |
| GAGATCTCAATACATTCCTG+AGG | - | tig0023079:44160-44179 | Msa1404680:CDS | 40.0% | |
| TCTTAAATACGATGTCTGGG+TGG | - | tig0023079:44398-44417 | Msa1404680:CDS | 40.0% | |
| ! | TTTTGCAAGAAAGGGGTTGT+AGG | + | tig0023079:44449-44468 | None:intergenic | 40.0% |
| ACAGTTAGAGATAGAGAGAG+AGG | + | tig0023079:44500-44519 | None:intergenic | 40.0% | |
| ! | GTGCTCAATTTTCCTCTTCA+TGG | - | tig0023079:44621-44640 | Msa1404680:intron | 40.0% |
| GTAAGATACTAGCCATGAAG+AGG | + | tig0023079:44636-44655 | None:intergenic | 40.0% | |
| AGCAACAGATCATAGTGTGA+GGG | + | tig0023079:44698-44717 | None:intergenic | 40.0% | |
| AAGCAACAGATCATAGTGTG+AGG | + | tig0023079:44699-44718 | None:intergenic | 40.0% | |
| TATCTTTGTCACACAGTGAC+AGG | + | tig0023079:44770-44789 | None:intergenic | 40.0% | |
| GCAATTTCTCAGATAAGACG+CGG | + | tig0023079:44809-44828 | None:intergenic | 40.0% | |
| AGAAATTGCTCCTACACCTT+TGG | - | tig0023079:44820-44839 | Msa1404680:intron | 40.0% | |
| GAGGCAGGATATATAACACA+AGG | + | tig0023079:44865-44884 | None:intergenic | 40.0% | |
| !! | ATCCTGCCTCAAGCTATTTT+TGG | - | tig0023079:44875-44894 | Msa1404680:intron | 40.0% |
| TACCAAAAATAGCTTGAGGC+AGG | + | tig0023079:44880-44899 | None:intergenic | 40.0% | |
| GATTGCCCACTTTGGTTAAT+TGG | - | tig0023079:44944-44963 | Msa1404680:intron | 40.0% | |
| CATGCCCAATTAACCAAAGT+GGG | + | tig0023079:44952-44971 | None:intergenic | 40.0% | |
| AGCAGCAAAGAAAAAACCCA+TGG | + | tig0023079:44999-45018 | None:intergenic | 40.0% | |
| !!! | GGGTTTTTTCTTTGCTGCTA+AGG | - | tig0023079:45000-45019 | Msa1404680:intron | 40.0% |
| ! | ATGTATTTGGTTCGTGTAGC+TGG | + | tig0023079:45084-45103 | None:intergenic | 40.0% |
| AACAGAAGATTGGCAACTCA+AGG | - | tig0023079:45193-45212 | Msa1404680:intron | 40.0% | |
| AAGATTGGCAACTCAAGGAA+AGG | - | tig0023079:45198-45217 | Msa1404680:intron | 40.0% | |
| AGATTGGCAACTCAAGGAAA+GGG | - | tig0023079:45199-45218 | Msa1404680:intron | 40.0% | |
| ACTACGCAATTTGAGTGTGA+AGG | - | tig0023079:45325-45344 | Msa1404680:CDS | 40.0% | |
| ! | TTAGCTTGAACTCCTTCACT+TGG | + | tig0023079:45370-45389 | None:intergenic | 40.0% |
| GTGAAGGAGTTCAAGCTAAA+AGG | - | tig0023079:45371-45390 | Msa1404680:CDS | 40.0% | |
| GGATCTAAGTTTGTCTCGTT+GGG | - | tig0023079:45533-45552 | Msa1404680:five_prime_UTR | 40.0% | |
| TTCTTCTACCTTGTCTTCGG+TGG | - | tig0023079:40825-40844 | Msa1404680:three_prime_UTR | 45.0% | |
| GTATGGCTATAGCTGGTGAT+TGG | - | tig0023079:41688-41707 | Msa1404680:intron | 45.0% | |
| GGATATGGAAAAGGGGAGAT+CGG | - | tig0023079:41750-41769 | Msa1404680:intron | 45.0% | |
| ATCGGACAACTCTTCATTGC+TGG | - | tig0023079:41768-41787 | Msa1404680:intron | 45.0% | |
| AAGTCACACAAGCTCTCTTC+CGG | + | tig0023079:41942-41961 | None:intergenic | 45.0% | |
| TTGATGTTGGGCCGTATCTT+GGG | - | tig0023079:42018-42037 | Msa1404680:CDS | 45.0% | |
| GCTAGTTGCTGAGCATTTCA+AGG | - | tig0023079:42083-42102 | Msa1404680:CDS | 45.0% | |
| AGTACCACGAGGAGAAAAGT+AGG | - | tig0023079:42278-42297 | Msa1404680:CDS | 45.0% | |
| !! | ACAACCTACTTTTCTCCTCG+TGG | + | tig0023079:42285-42304 | None:intergenic | 45.0% |
| ! | AGTCACTGAGGCATGGTTTT+TGG | - | tig0023079:42589-42608 | Msa1404680:intron | 45.0% |
| GCAGAGGCAATACAGTTTGA+TGG | - | tig0023079:42724-42743 | Msa1404680:intron | 45.0% | |
| TCAACGTGTTCCTGCAAACT+AGG | - | tig0023079:42869-42888 | Msa1404680:CDS | 45.0% | |
| ! | CCCCGGAAATCAACATCTTT+TGG | + | tig0023079:42901-42920 | None:intergenic | 45.0% |
| ! | GCCATATTTTCTGGGCTGTT+TGG | - | tig0023079:43197-43216 | Msa1404680:intron | 45.0% |
| ! | AGAGCTTGCTTGCCCAATTT+AGG | - | tig0023079:43351-43370 | Msa1404680:intron | 45.0% |
| ! | GAGCTTGCTTGCCCAATTTA+GGG | - | tig0023079:43352-43371 | Msa1404680:intron | 45.0% |
| ! | AGCTTGCTTGCCCAATTTAG+GGG | - | tig0023079:43353-43372 | Msa1404680:intron | 45.0% |
| GCCATACAGTCTCTCTTTGA+AGG | - | tig0023079:43696-43715 | Msa1404680:intron | 45.0% | |
| AGGAGTCCATAGGAACACAA+AGG | + | tig0023079:43733-43752 | None:intergenic | 45.0% | |
| GGGGGATCTCTTCATCATTT+GGG | + | tig0023079:43764-43783 | None:intergenic | 45.0% | |
| TGGGGGATCTCTTCATCATT+TGG | + | tig0023079:43765-43784 | None:intergenic | 45.0% | |
| AATGATGAAGAGATCCCCCA+TGG | - | tig0023079:43765-43784 | Msa1404680:intron | 45.0% | |
| ! | CTCGCTTGCATCTAAGTTGA+TGG | - | tig0023079:43830-43849 | Msa1404680:intron | 45.0% |
| GCAGTTCCTACTAAAGCAAC+AGG | - | tig0023079:44044-44063 | Msa1404680:intron | 45.0% | |
| GTTCCTACTAAAGCAACAGG+TGG | - | tig0023079:44047-44066 | Msa1404680:intron | 45.0% | |
| AATACATTCCTGAGGAAGCC+AGG | - | tig0023079:44168-44187 | Msa1404680:CDS | 45.0% | |
| ! | AAAGTTCATGATGGTGCTCC+TGG | + | tig0023079:44189-44208 | None:intergenic | 45.0% |
| CATAGTGTGAGGGTCTTACT+TGG | + | tig0023079:44688-44707 | None:intergenic | 45.0% | |
| ! | CTACACAAAGCCAAAGGTGT+AGG | + | tig0023079:44833-44852 | None:intergenic | 45.0% |
| AGATCTCTGATACTGCAGCA+AGG | - | tig0023079:44899-44918 | Msa1404680:intron | 45.0% | |
| AGCTAGATGATTGCCCACTT+TGG | - | tig0023079:44936-44955 | Msa1404680:intron | 45.0% | |
| GCATGCCCAATTAACCAAAG+TGG | + | tig0023079:44953-44972 | None:intergenic | 45.0% | |
| CTTGCCCTGCCTATATTATC+TGG | - | tig0023079:45023-45042 | Msa1404680:intron | 45.0% | |
| !! | CAGATTCAATGGCTCTGACT+CGG | + | tig0023079:45228-45247 | None:intergenic | 45.0% |
| AACTCCTTCACTTGGTTGGT+GGG | + | tig0023079:45362-45381 | None:intergenic | 45.0% | |
| CTTGAACTCCTTCACTTGGT+TGG | + | tig0023079:45366-45385 | None:intergenic | 45.0% | |
| !! | ATGTCAATTCTTTTGGGGGG+CGG | - | tig0023079:45511-45530 | Msa1404680:five_prime_UTR | 45.0% |
| GGGATCTAAGTTTGTCTCGT+TGG | - | tig0023079:45532-45551 | Msa1404680:five_prime_UTR | 45.0% | |
| GAGAGAGAGAAGGGTGAAGA+AGG | + | tig0023079:40670-40689 | None:intergenic | 50.0% | |
| TTCATACCACTCGTGTCTCG+TGG | - | tig0023079:40703-40722 | Msa1404680:three_prime_UTR | 50.0% | |
| ACACACTCTGCAAGAGAGAC+TGG | - | tig0023079:40750-40769 | Msa1404680:three_prime_UTR | 50.0% | |
| CACACTCTGCAAGAGAGACT+GGG | - | tig0023079:40751-40770 | Msa1404680:three_prime_UTR | 50.0% | |
| CTCGAGAACAGCAACAACAG+CGG | + | tig0023079:40856-40875 | None:intergenic | 50.0% | |
| GGTGATGCAGCTTGCAATGT+AGG | + | tig0023079:41974-41993 | None:intergenic | 50.0% | |
| CTTGATGTTGGGCCGTATCT+TGG | - | tig0023079:42017-42036 | Msa1404680:CDS | 50.0% | |
| TGGCAATGCCACCCAAGATA+CGG | + | tig0023079:42032-42051 | None:intergenic | 50.0% | |
| GCCCCTCTGATAGATTCATG+TGG | + | tig0023079:43114-43133 | None:intergenic | 50.0% | |
| ! | AGAGGGGCTTTGATCAGCAA+TGG | - | tig0023079:43126-43145 | Msa1404680:intron | 50.0% |
| !! | TACATTGGCTCTTGGACCAG+TGG | - | tig0023079:43235-43254 | Msa1404680:intron | 50.0% |
| AAACCTGCAGCAGCGTCAAA+GGG | + | tig0023079:43263-43282 | None:intergenic | 50.0% | |
| AAAACCTGCAGCAGCGTCAA+AGG | + | tig0023079:43264-43283 | None:intergenic | 50.0% | |
| AATCTACCTAACGAGTGGGC+TGG | - | tig0023079:43490-43509 | Msa1404680:intron | 50.0% | |
| GGCTTAATGCAGGAGTCCAT+AGG | + | tig0023079:43743-43762 | None:intergenic | 50.0% | |
| TCTGCATGTAGCTCTCCACA+CGG | + | tig0023079:43869-43888 | None:intergenic | 50.0% | |
| ! | TGGGTGGAGGGAGAGTATAT+TGG | + | tig0023079:43955-43974 | None:intergenic | 50.0% |
| TATACTCTCCCTCCACCCAT+TGG | - | tig0023079:43956-43975 | Msa1404680:intron | 50.0% | |
| TCACAGTACCAATGGGTGGA+GGG | + | tig0023079:43967-43986 | None:intergenic | 50.0% | |
| ATCACAGTACCAATGGGTGG+AGG | + | tig0023079:43968-43987 | None:intergenic | 50.0% | |
| !! | CCACCACCTGTTGCTTTAGT+AGG | + | tig0023079:44053-44072 | None:intergenic | 50.0% |
| CCTACTAAAGCAACAGGTGG+TGG | - | tig0023079:44050-44069 | Msa1404680:intron | 50.0% | |
| ACCCAAAAGCTGAATGCACC+CGG | + | tig0023079:44087-44106 | None:intergenic | 50.0% | |
| GAACTCCTTCACTTGGTTGG+TGG | + | tig0023079:45363-45382 | None:intergenic | 50.0% | |
| !! | TGTCAATTCTTTTGGGGGGC+GGG | - | tig0023079:45512-45531 | Msa1404680:five_prime_UTR | 50.0% |
| ATCAGCTACGACGAGTGCGT+TGG | + | tig0023079:40617-40636 | None:intergenic | 55.0% | |
| ATGGTACCACGAGACACGAG+TGG | + | tig0023079:40712-40731 | None:intergenic | 55.0% | |
| CGGCTAATCCACCGAAGACA+AGG | + | tig0023079:40836-40855 | None:intergenic | 55.0% | |
| ATGTTGGGCCGTATCTTGGG+TGG | - | tig0023079:42021-42040 | Msa1404680:CDS | 55.0% | |
| ! | GTGGTGTAGTGGAGTCACTG+AGG | - | tig0023079:42577-42596 | Msa1404680:intron | 55.0% |
| ! | GTAGTGGAGTCACTGAGGCA+TGG | - | tig0023079:42582-42601 | Msa1404680:intron | 55.0% |
| AACCTGCAGCAGCGTCAAAG+GGG | + | tig0023079:43262-43281 | None:intergenic | 55.0% | |
| !! | TGCCCAATTTAGGGGTGCTG+CGG | - | tig0023079:43361-43380 | Msa1404680:intron | 55.0% |
| CACCGCAGCACCCCTAAATT+GGG | + | tig0023079:43366-43385 | None:intergenic | 55.0% | |
| TAATGGCCAGCCCACTCGTT+AGG | + | tig0023079:43499-43518 | None:intergenic | 55.0% | |
| GGCTCGTTCATCATTCCGTG+TGG | - | tig0023079:43851-43870 | Msa1404680:intron | 55.0% | |
| ! | GCCGGGTGCATTCAGCTTTT+GGG | - | tig0023079:44083-44102 | Msa1404680:intron | 55.0% |
| AAGGCGACTGCTCGTGATTG+CGG | - | tig0023079:44657-44676 | Msa1404680:intron | 55.0% | |
| ACCTGCAGCAGCGTCAAAGG+GGG | + | tig0023079:43261-43280 | None:intergenic | 60.0% | |
| CCACCGCAGCACCCCTAAAT+TGG | + | tig0023079:43367-43386 | None:intergenic | 60.0% | |
| !! | CCAATTTAGGGGTGCTGCGG+TGG | - | tig0023079:43364-43383 | Msa1404680:intron | 60.0% |
| ! | GGTGGTGGTCTCTCATTCGC+CGG | - | tig0023079:44065-44084 | Msa1404680:intron | 60.0% |
| GTGGTGGTCTCTCATTCGCC+GGG | - | tig0023079:44066-44085 | Msa1404680:intron | 60.0% | |
| ! | CGCCGGGTGCATTCAGCTTT+TGG | - | tig0023079:44082-44101 | Msa1404680:intron | 60.0% |
| ATGGTGCTCCTGGCTTCCTC+AGG | + | tig0023079:44179-44198 | None:intergenic | 60.0% | |
| GGTGCCCACCAACCAAGTGA+AGG | - | tig0023079:45355-45374 | Msa1404680:CDS | 60.0% | |
| GCTGCGGTGGCCATTGCTTC+TGG | - | tig0023079:43377-43396 | Msa1404680:intron | 65.0% | |
| GCAGCGTCAAAGGGGGCCAC+TGG | + | tig0023079:43254-43273 | None:intergenic | 70.0% | |
| GCCCCCTTTGACGCTGCTGC+AGG | - | tig0023079:43257-43276 | Msa1404680:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023079 | gene | 40527 | 45689 | 40527 | ID=Msa1404680;Name=Msa1404680 |
| tig0023079 | mRNA | 40527 | 45689 | 40527 | ID=Msa1404680-mRNA-1;Parent=Msa1404680;Name=Msa1404680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=289|1|1|1|1|1|8|439|459 |
| tig0023079 | exon | 40527 | 41024 | 40527 | ID=Msa1404680-mRNA-1:exon:23753;Parent=Msa1404680-mRNA-1 |
| tig0023079 | exon | 41528 | 41630 | 41528 | ID=Msa1404680-mRNA-1:exon:23752;Parent=Msa1404680-mRNA-1 |
| tig0023079 | exon | 41963 | 42178 | 41963 | ID=Msa1404680-mRNA-1:exon:23751;Parent=Msa1404680-mRNA-1 |
| tig0023079 | exon | 42278 | 42543 | 42278 | ID=Msa1404680-mRNA-1:exon:23750;Parent=Msa1404680-mRNA-1 |
| tig0023079 | exon | 42818 | 43088 | 42818 | ID=Msa1404680-mRNA-1:exon:23749;Parent=Msa1404680-mRNA-1 |
| tig0023079 | exon | 44112 | 44280 | 44112 | ID=Msa1404680-mRNA-1:exon:23748;Parent=Msa1404680-mRNA-1 |
| tig0023079 | exon | 44372 | 44516 | 44372 | ID=Msa1404680-mRNA-1:exon:23747;Parent=Msa1404680-mRNA-1 |
| tig0023079 | exon | 45250 | 45689 | 45250 | ID=Msa1404680-mRNA-1:exon:23746;Parent=Msa1404680-mRNA-1 |
| tig0023079 | five_prime_UTR | 45401 | 45689 | 45401 | ID=Msa1404680-mRNA-1:five_prime_utr;Parent=Msa1404680-mRNA-1 |
| tig0023079 | CDS | 45250 | 45400 | 45250 | ID=Msa1404680-mRNA-1:cds;Parent=Msa1404680-mRNA-1 |
| tig0023079 | CDS | 44372 | 44516 | 44372 | ID=Msa1404680-mRNA-1:cds;Parent=Msa1404680-mRNA-1 |
| tig0023079 | CDS | 44112 | 44280 | 44112 | ID=Msa1404680-mRNA-1:cds;Parent=Msa1404680-mRNA-1 |
| tig0023079 | CDS | 42818 | 43088 | 42818 | ID=Msa1404680-mRNA-1:cds;Parent=Msa1404680-mRNA-1 |
| tig0023079 | CDS | 42278 | 42543 | 42278 | ID=Msa1404680-mRNA-1:cds;Parent=Msa1404680-mRNA-1 |
| tig0023079 | CDS | 41963 | 42178 | 41963 | ID=Msa1404680-mRNA-1:cds;Parent=Msa1404680-mRNA-1 |
| tig0023079 | CDS | 41528 | 41630 | 41528 | ID=Msa1404680-mRNA-1:cds;Parent=Msa1404680-mRNA-1 |
| tig0023079 | CDS | 40966 | 41024 | 40966 | ID=Msa1404680-mRNA-1:cds;Parent=Msa1404680-mRNA-1 |
| tig0023079 | three_prime_UTR | 40527 | 40965 | 40527 | ID=Msa1404680-mRNA-1:three_prime_utr;Parent=Msa1404680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
