AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0828840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0828840 MtrunA17_Chr1g0167381 98.722 626 8 0 1 626 1 626 0.0 1294
Msa0828840 MtrunA17_Chr1g0187601 82.372 624 109 1 1 624 1 623 0.0 1061
Msa0828840 MtrunA17_Chr1g0183721 68.590 624 162 5 1 622 1 592 0.0 923
Msa0828840 MtrunA17_Chr1g0159741 46.004 513 253 10 92 594 141 639 7.19e-162 478
Msa0828840 MtrunA17_Chr3g0112341 44.847 524 270 7 72 588 133 644 1.43e-161 478
Msa0828840 MtrunA17_Chr1g0171781 45.714 525 273 6 94 615 88 603 2.24e-158 468
Msa0828840 MtrunA17_Chr5g0435751 44.269 506 243 7 90 588 123 596 7.50e-157 464
Msa0828840 MtrunA17_Chr8g0388881 45.203 542 264 12 90 615 96 620 4.20e-156 462
Msa0828840 MtrunA17_Chr3g0130381 43.023 602 293 18 41 624 218 787 1.41e-152 459
Msa0828840 MtrunA17_Chr1g0203741 44.790 547 260 14 91 615 91 617 5.04e-152 452
Msa0828840 MtrunA17_Chr7g0246701 44.898 539 266 12 93 615 102 625 1.04e-150 449
Msa0828840 MtrunA17_Chr8g0361791 39.870 617 320 14 18 617 20 602 6.64e-150 446
Msa0828840 MtrunA17_Chr5g0437501 45.291 499 250 9 101 587 101 588 1.29e-149 446
Msa0828840 MtrunA17_Chr4g0055031 42.491 546 274 12 90 618 84 606 1.12e-148 443
Msa0828840 MtrunA17_Chr8g0350391 42.357 543 277 11 92 615 105 630 4.99e-148 442
Msa0828840 MtrunA17_Chr3g0125511 45.149 536 257 16 100 619 232 746 6.96e-148 446
Msa0828840 MtrunA17_Chr7g0246681 40.493 568 309 9 55 615 42 587 8.15e-148 440
Msa0828840 MtrunA17_Chr6g0472571 42.202 545 281 12 92 620 105 631 3.03e-147 440
Msa0828840 MtrunA17_Chr5g0416991 39.937 636 328 15 1 617 1 601 6.82e-147 438
Msa0828840 MtrunA17_Chr8g0384431 45.437 504 248 12 101 590 298 788 4.01e-146 443
Msa0828840 MtrunA17_Chr8g0350351 41.210 529 284 8 95 615 91 600 5.77e-146 436
Msa0828840 MtrunA17_Chr8g0369481 40.331 543 287 9 92 618 70 591 3.01e-143 429
Msa0828840 MtrunA17_Chr5g0409411 38.179 626 329 11 10 620 13 595 1.79e-141 424
Msa0828840 MtrunA17_Chr8g0372471 44.289 499 254 10 100 588 386 870 9.54e-141 431
Msa0828840 MtrunA17_Chr3g0113981 44.106 492 255 9 101 587 175 651 1.62e-138 419
Msa0828840 MtrunA17_Chr3g0092501 40.375 587 302 14 14 587 21 572 2.27e-138 416
Msa0828840 MtrunA17_Chr7g0214551 41.756 558 292 15 74 611 23 567 1.83e-136 410
Msa0828840 MtrunA17_Chr5g0426281 36.545 550 302 12 90 615 144 670 1.69e-116 362
Msa0828840 MtrunA17_Chr3g0115931 36.754 536 306 11 90 601 152 678 1.73e-115 360
Msa0828840 MtrunA17_Chr1g0155141 34.828 580 325 15 55 615 154 699 5.01e-105 333
Msa0828840 MtrunA17_Chr5g0404771 50.391 256 111 5 100 354 328 568 5.78e-80 263
Msa0828840 MtrunA17_Chr5g0404761 40.996 261 133 9 342 588 1 254 2.96e-58 197
Msa0828840 MtrunA17_Chr4g0043121 31.765 340 215 6 90 418 84 417 4.18e-57 198
Msa0828840 MtrunA17_Chr4g0043131 42.775 173 81 3 446 601 2 173 1.14e-39 143
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0828840 AT1G04430.1 75.238 630 142 5 1 624 1 622 0.0 1014
Msa0828840 AT1G04430.3 75.238 630 142 5 1 624 1 622 0.0 1014
Msa0828840 AT1G04430.2 75.238 630 142 5 1 624 1 622 0.0 1014
Msa0828840 AT3G23300.2 74.718 621 144 3 3 623 2 609 0.0 981
Msa0828840 AT3G23300.1 74.718 621 144 3 3 623 2 609 0.0 981
Msa0828840 AT4G14360.1 74.557 621 142 4 3 623 2 606 0.0 957
Msa0828840 AT4G14360.2 74.557 621 142 4 3 623 2 606 0.0 957
Msa0828840 AT5G14430.1 60.165 605 226 3 12 615 14 604 0.0 763
Msa0828840 AT5G14430.2 59.669 605 229 3 12 615 14 604 0.0 757
Msa0828840 AT5G06050.1 43.672 561 291 10 35 587 96 639 3.86e-167 493
Msa0828840 AT2G39750.1 46.535 505 251 8 90 587 175 667 5.79e-165 488
Msa0828840 AT1G77260.1 45.908 501 250 8 94 587 145 631 1.94e-164 485
Msa0828840 AT3G10200.1 45.028 533 279 7 87 615 66 588 2.46e-161 475
Msa0828840 AT5G04060.1 44.656 524 277 7 94 615 85 597 8.12e-158 466
Msa0828840 AT1G33170.1 45.631 515 252 10 90 588 108 610 3.09e-156 464
Msa0828840 AT4G10440.1 45.631 515 251 11 90 588 91 592 2.38e-155 461
Msa0828840 AT3G51070.1 45.122 574 275 16 32 588 319 869 1.35e-153 465
Msa0828840 AT2G45750.1 45.648 517 251 9 91 588 86 591 2.02e-153 456
Msa0828840 AT3G10200.2 47.292 480 241 6 87 562 66 537 7.66e-152 451
Msa0828840 AT2G34300.2 44.898 539 262 15 101 624 250 768 1.79e-149 451
Msa0828840 AT2G34300.3 44.898 539 262 15 101 624 250 768 1.79e-149 451
Msa0828840 AT2G34300.1 44.898 539 262 15 101 624 250 768 1.79e-149 451
Msa0828840 AT1G29470.1 45.591 533 257 15 101 620 250 762 3.65e-149 450
Msa0828840 AT1G29470.2 45.591 533 257 15 101 620 250 762 3.65e-149 450
Msa0828840 AT4G19120.1 37.942 622 328 10 11 620 20 595 4.79e-149 444
Msa0828840 AT4G19120.2 37.942 622 328 10 11 620 20 595 4.79e-149 444
Msa0828840 AT5G64030.1 42.933 566 286 15 70 619 276 820 2.17e-147 447
Msa0828840 AT1G26850.2 39.688 640 327 17 4 620 10 613 1.78e-146 438
Msa0828840 AT1G26850.1 39.688 640 327 17 4 620 10 613 1.78e-146 438
Msa0828840 AT4G00750.1 42.251 542 280 12 92 615 96 622 1.37e-143 431
Msa0828840 AT4G00740.1 38.742 604 327 13 21 615 24 593 3.94e-142 426
Msa0828840 AT4G00740.2 38.742 604 327 13 21 615 24 593 3.94e-142 426
Msa0828840 AT3G51070.2 45.386 531 251 15 32 545 319 827 6.28e-141 431
Msa0828840 AT1G31850.1 39.338 544 295 10 91 618 75 599 1.06e-140 422
Msa0828840 AT1G31850.2 39.338 544 295 10 91 618 75 599 1.06e-140 422
Msa0828840 AT1G31850.4 39.338 544 295 10 91 618 75 599 1.06e-140 422
Msa0828840 AT1G31850.3 39.338 544 295 10 91 618 75 599 1.06e-140 422
Msa0828840 AT2G43200.2 43.340 533 268 14 92 607 91 606 7.41e-138 416
Msa0828840 AT2G43200.1 43.340 533 268 14 92 607 91 606 7.41e-138 416
Msa0828840 AT2G40280.1 44.016 493 252 12 101 587 90 564 3.93e-137 413
Msa0828840 AT4G18030.1 40.255 549 289 12 86 617 79 605 1.16e-134 408
Msa0828840 AT3G56080.1 43.232 495 256 11 101 587 114 591 1.66e-134 407
Msa0828840 AT3G56080.2 44.812 453 226 10 101 545 114 550 3.14e-126 384
Msa0828840 AT4G19120.3 38.004 521 270 8 11 519 20 499 6.67e-121 368
Msa0828840 AT1G78240.1 34.944 538 308 11 90 598 144 668 2.15e-112 352
Msa0828840 AT1G78240.2 34.944 538 308 11 90 598 144 668 2.15e-112 352
Msa0828840 AT1G26850.3 39.181 513 264 13 4 497 10 493 2.45e-111 343
Msa0828840 AT1G13860.4 33.993 556 302 11 90 614 79 600 1.03e-107 337
Msa0828840 AT1G13860.3 33.993 556 302 11 90 614 79 600 1.03e-107 337
Msa0828840 AT1G13860.1 33.993 556 302 11 90 614 79 600 1.03e-107 337
Msa0828840 AT1G13860.5 33.993 556 302 11 90 614 79 600 1.03e-107 337
Msa0828840 AT1G19430.1 36.822 535 296 14 91 615 220 722 2.68e-105 335
Msa0828840 AT1G19430.3 36.822 535 296 14 91 615 220 722 2.68e-105 335
Msa0828840 AT2G03480.2 35.075 536 288 10 90 601 84 583 1.64e-103 326
Msa0828840 AT2G03480.1 34.637 537 300 11 90 601 84 594 1.62e-98 313
Msa0828840 AT1G13860.2 35.853 463 250 9 180 614 1 444 1.04e-94 298
Msa0828840 AT1G19430.2 34.414 401 228 12 91 481 220 595 7.44e-62 216
Msa0828840 AT2G03480.3 33.550 307 192 4 90 389 84 385 3.73e-55 194

Find 188 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACTTGGGGCATCGTATT+TGG 0.136099 5_4:-1795455 Msa0828840:CDS
CATTATTCTGCCCTTCAATT+TGG 0.143921 5_4:-1791369 Msa0828840:three_prime_UTR
GGCTGTGGTGTTGCAAGTTT+TGG 0.191581 5_4:-1793778 Msa0828840:CDS
CTGCTCTGTGGCCACTTAAT+AGG 0.250527 5_4:+1794519 None:intergenic
ATTGTTAAATTTCCTTCTTT+TGG 0.255928 5_4:-1791471 Msa0828840:three_prime_UTR
ATGAATGTTGTTCCACCTTA+TGG 0.267552 5_4:-1792243 Msa0828840:CDS
TGCAGTTTGGGGAGTGAATA+TGG 0.280958 5_4:-1793296 Msa0828840:CDS
TAAGTAAGTGTTTGTTTGTT+TGG 0.296374 5_4:+1796819 None:intergenic
CTCTGTCGAATACAATTCTA+AGG 0.298104 5_4:+1792211 None:intergenic
CATCACATGGCCATTAGTTC+TGG 0.306050 5_4:-1791544 Msa0828840:three_prime_UTR
TTCACTCCCCAAACTGCATC+TGG 0.308256 5_4:+1793301 None:intergenic
TTGAGCTTGACCGTGTTCTT+AGG 0.311608 5_4:-1793543 Msa0828840:CDS
CGTTTAGTTGCTTCCGTTTG+TGG 0.312759 5_4:-1795577 Msa0828840:CDS
TAGTGAGCCACAATTTCTTC+TGG 0.318396 5_4:+1791689 None:intergenic
TGCTAGTTCAGGTTGTGTTT+TGG 0.331539 5_4:-1795751 Msa0828840:five_prime_UTR
TCGTCCTGAGCATATGCTTC+TGG 0.332248 5_4:+1793493 None:intergenic
GGTTCATCTACAGCTGAATA+TGG 0.335574 5_4:-1795490 Msa0828840:CDS
ATTATTCTGCCCTTCAATTT+GGG 0.336684 5_4:-1791368 Msa0828840:three_prime_UTR
CTCTTAAAGACAAAGATGTT+TGG 0.339388 5_4:-1792269 Msa0828840:CDS
AAATAATTTCATTGCCATCT+TGG 0.345100 5_4:+1791719 None:intergenic
ATATCTTTCACCTTGTATCC+TGG 0.347634 5_4:+1794626 None:intergenic
GAAGAGAGAGAAGTGAGATT+TGG 0.347717 5_4:+1796771 None:intergenic
TGACGACCCAGATGCAGTTT+GGG 0.348581 5_4:-1793308 Msa0828840:CDS
ATGACGACCCAGATGCAGTT+TGG 0.353594 5_4:-1793309 Msa0828840:CDS
AGACTTGGGGCATCGTATTT+GGG 0.362411 5_4:-1795454 Msa0828840:CDS
TGTGGTGTGGCACTCTTTCT+CGG 0.362412 5_4:-1795559 Msa0828840:CDS
TCAAATATATTACACACTTT+AGG 0.364075 5_4:-1795815 Msa0828840:five_prime_UTR
CACATAGTAGATTGTCTTTG+TGG 0.366810 5_4:-1791318 Msa0828840:three_prime_UTR
CTTTCACAACCATCCAGTTC+TGG 0.370022 5_4:+1794439 None:intergenic
CCTGCATATCTTGGTGTCTT+GGG 0.373580 5_4:-1793661 Msa0828840:CDS
CAGGTTATTTATTAAGCCTT+AGG 0.374298 5_4:-1791414 Msa0828840:three_prime_UTR
AAGAGAAGTCCGACCAGAAC+TGG 0.375125 5_4:-1794452 Msa0828840:CDS
TACACACTTTAGGAAGAATC+TGG 0.384059 5_4:-1795805 Msa0828840:five_prime_UTR
ATCCCTGATGATTATGAAAC+CGG 0.384290 5_4:+1791831 None:intergenic
CTCTTTGAAGCCAGTCAATT+CGG 0.384506 5_4:+1793581 None:intergenic
CCTTAGGGATGCAGCAGAAT+AGG 0.386264 5_4:-1791659 Msa0828840:exon
ACGAAGAGGATTTGAGGATA+TGG 0.387587 5_4:-1793474 Msa0828840:CDS
AATATTGTGGTTGCTAGTTC+AGG 0.388415 5_4:-1795762 Msa0828840:five_prime_UTR
GTCATATGTTACAGGAACTT+TGG 0.392510 5_4:-1792398 Msa0828840:intron
ATCTTTGGTGGTCAAAATAG+TGG 0.394278 5_4:-1795511 Msa0828840:CDS
TCTTAAAGACAAAGATGTTT+GGG 0.394931 5_4:-1792268 Msa0828840:CDS
ATTCAATTTGCTTTAGAAAG+AGG 0.398168 5_4:-1793688 Msa0828840:CDS
TTCGTTGTTAAGATTATTGT+CGG 0.399186 5_4:+1793828 None:intergenic
TCTCACGAATGATTGCTATA+TGG 0.401558 5_4:-1793371 Msa0828840:CDS
GTGTTCCAAGGATCCATCTT+TGG 0.406730 5_4:-1795526 Msa0828840:CDS
CATGGAGTAAATCATATGTT+CGG 0.408869 5_4:+1791938 None:intergenic
GAGTGTGAAGAAGGTATTAT+CGG 0.414320 5_4:+1796793 None:intergenic
TATCTTTCACCTTGTATCCT+GGG 0.419086 5_4:+1794627 None:intergenic
AATGGATATGAAAGCAAACT+TGG 0.422751 5_4:-1792307 Msa0828840:CDS
GTTCTCGTTGCCGAATTGAC+TGG 0.424178 5_4:-1793591 Msa0828840:CDS
TCCTGCATATCTTGGTGTCT+TGG 0.425287 5_4:-1793662 Msa0828840:CDS
ATTACTTGAGATGGACCGTT+TGG 0.428941 5_4:-1791863 Msa0828840:CDS
GTTTCTGCCAGATGACAGTT+TGG 0.429134 5_4:+1793395 None:intergenic
CTACCGGTTTCATAATCATC+AGG 0.429510 5_4:-1791834 Msa0828840:CDS
GTATTCGACAGAGGACTCAT+AGG 0.430881 5_4:-1792201 Msa0828840:CDS
GGCTCACTACTGAAAGCCTT+AGG 0.436251 5_4:-1791675 Msa0828840:CDS
TGAGATTTGGAGTGTGAAGA+AGG 0.449553 5_4:+1796784 None:intergenic
TTGAGATGGACCGTTTGGTT+AGG 0.449740 5_4:-1791858 Msa0828840:CDS
CTATTAAGTGGCCACAGAGC+AGG 0.451293 5_4:-1794518 Msa0828840:CDS
CTGCGAACTGTTCTTGATGT+TGG 0.451569 5_4:-1793799 Msa0828840:CDS
TATACTGCTTCCAGAACTAA+TGG 0.458321 5_4:+1791534 None:intergenic
CTAAGGGTGCTTGGTCCATA+AGG 0.458649 5_4:+1792228 None:intergenic
GACCGTTTGGTTAGGCCTAC+CGG 0.460269 5_4:-1791850 Msa0828840:CDS
GACCACCAAAGATGGATCCT+TGG 0.460777 5_4:+1795521 None:intergenic
AAAGAGTGCCACACCACAAA+CGG 0.461307 5_4:+1795564 None:intergenic
TCAAAAGATCTACTTGGGTA+AGG 0.465647 5_4:+1793625 None:intergenic
CATTCTTATGATCATAATGC+AGG 0.468042 5_4:-1791433 Msa0828840:three_prime_UTR
CTTAGGCCTAATGTTTCCAT+TGG 0.468494 5_4:-1791397 Msa0828840:three_prime_UTR
AGAGGAATTCCTGCATATCT+TGG 0.469580 5_4:-1793670 Msa0828840:CDS
ATATATTCTCTGCTGTTACA+AGG 0.473769 5_4:-1791576 Msa0828840:three_prime_UTR
TTCAAGTGAAGTCTTCGAAA+AGG 0.475992 5_4:-1792836 Msa0828840:CDS
TGTTTCAGGTTCCTATTAAG+TGG 0.477852 5_4:-1794530 Msa0828840:intron
TGAATCTTCGAGTTTAGTGC+AGG 0.480655 5_4:-1795398 Msa0828840:CDS
AGTATCTAACAGCATTGCAT+TGG 0.483730 5_4:-1791780 Msa0828840:CDS
CAATTGTACCGCCTTTCTGC+AGG 0.485926 5_4:+1794665 None:intergenic
TTACATTATACCCAAATTGA+AGG 0.487165 5_4:+1791358 None:intergenic
ATCTTGGTCAGAGTCAGAAC+TGG 0.487386 5_4:+1791735 None:intergenic
TGAAAATGAGTCCCTCCTCC+AGG 0.489393 5_4:+1794399 None:intergenic
CCTATTCTGCTGCATCCCTA+AGG 0.490448 5_4:+1791659 None:intergenic
GAATATCCAATGGAAACATT+AGG 0.493543 5_4:+1791391 None:intergenic
AATTAGCTCCATGGCCTTCG+AGG 0.494253 5_4:-1792897 Msa0828840:CDS
AGAGAGACCAAACTGTCATC+TGG 0.495263 5_4:-1793402 Msa0828840:CDS
GGAAAATCGTTGAAAAGACT+TGG 0.495389 5_4:-1795469 Msa0828840:CDS
ATCTTTCACCTTGTATCCTG+GGG 0.496697 5_4:+1794628 None:intergenic
CTCAGGACGAAGAGGATTTG+AGG 0.497228 5_4:-1793480 Msa0828840:CDS
CTTGACCGTGTTCTTAGGCC+GGG 0.497854 5_4:-1793538 Msa0828840:CDS
AGAAGATCTATTACTTGAGA+TGG 0.498372 5_4:-1791872 Msa0828840:CDS
CACAGAGCAGGGAGGAGGTA+TGG 0.499092 5_4:-1794506 Msa0828840:CDS
ATGCCGAGGTCAGCTAATCT+AGG 0.500016 5_4:+1792859 None:intergenic
CAAAGAGGAGGACGAGTACC+AGG 0.502549 5_4:+1793340 None:intergenic
ATGTTGAAAGTAAGACAAAT+CGG 0.502644 5_4:+1795640 None:intergenic
GAACACTGTGAGGAACATAA+TGG 0.505031 5_4:-1792325 Msa0828840:CDS
GCAAGTTCAAAAGATCTACT+TGG 0.507002 5_4:+1793619 None:intergenic
CTATCAAATGAGACTGAAGC+TGG 0.508340 5_4:-1794726 Msa0828840:CDS
CCCAAGACACCAAGATATGC+AGG 0.508430 5_4:+1793661 None:intergenic
ATGTCGAGGGGCAGATCTGA+TGG 0.509198 5_4:-1795613 Msa0828840:CDS
GCTTGACCGTGTTCTTAGGC+CGG 0.510074 5_4:-1793539 Msa0828840:CDS
CAATGGAAACATTAGGCCTA+AGG 0.511975 5_4:+1791398 None:intergenic
GCTCACTACTGAAAGCCTTA+GGG 0.514660 5_4:-1791674 Msa0828840:CDS
AGGTACTCACGGTCAGAGTA+AGG 0.515202 5_4:+1793259 None:intergenic
GTATCTAACAGCATTGCATT+GGG 0.515914 5_4:-1791779 Msa0828840:CDS
TGATATCATTGCAATGTCCT+TGG 0.516178 5_4:-1793737 Msa0828840:CDS
GAAAATCGTTGAAAAGACTT+GGG 0.516801 5_4:-1795468 Msa0828840:CDS
AATCTTACAGGGAAACTCTT+CGG 0.522037 5_4:+1795349 None:intergenic
AACCGGTAGGCCTAACCAAA+CGG 0.524646 5_4:+1791848 None:intergenic
TGAGAATTACTGGAATCTCA+TGG 0.526486 5_4:-1792364 Msa0828840:CDS
ATCAGATGACAACAGAGCAC+AGG 0.526584 5_4:-1792926 Msa0828840:intron
ATGGAGTAAATCATATGTTC+GGG 0.528127 5_4:+1791939 None:intergenic
ATGAAATGAGAACCAAAAGA+AGG 0.530476 5_4:+1791459 None:intergenic
ACTGTTCTTGATGTTGGCTG+TGG 0.534011 5_4:-1793793 Msa0828840:CDS
CTGGTCAACCTCGAAGGCCA+TGG 0.535730 5_4:+1792889 None:intergenic
GTGGCCACAGAGCAGGGAGG+AGG 0.539572 5_4:-1794511 Msa0828840:CDS
TATTAAATTTGAAAATATTG+TGG 0.541718 5_4:-1795775 Msa0828840:five_prime_UTR
CTCTTGTCGGACGCATGTGT+TGG 0.541931 5_4:-1793438 Msa0828840:CDS
ACTTGGGTAAGGGAGTCTCT+TGG 0.542106 5_4:+1793636 None:intergenic
TTCCAAGGATCCATCTTTGG+TGG 0.542297 5_4:-1795523 Msa0828840:CDS
CAAAAGATCTACTTGGGTAA+GGG 0.547046 5_4:+1793626 None:intergenic
TTCTTAACAAAATCAATCAC+AGG 0.552088 5_4:+1791802 None:intergenic
ATGCACGTCATTGGGTGCCA+AGG 0.552467 5_4:+1793720 None:intergenic
CATCTGGGTCGTCATCAGAC+TGG 0.554682 5_4:+1793317 None:intergenic
CAAGTTCAAAAGATCTACTT+GGG 0.555994 5_4:+1793620 None:intergenic
GAAGCTGGATCTTTCTGTGA+TGG 0.556823 5_4:-1794711 Msa0828840:CDS
TTTCAACATATAAATGTCGA+GGG 0.556989 5_4:-1795626 Msa0828840:exon
TGCTATATGGAAAGAGAACC+TGG 0.558054 5_4:-1793358 Msa0828840:CDS
GTCTCCAGAAGCATATGCTC+AGG 0.559721 5_4:-1793497 Msa0828840:CDS
TTGTTATCCAGAAGAAATTG+TGG 0.559819 5_4:-1791696 Msa0828840:CDS
AATACAATTCTAAGGGTGCT+TGG 0.560490 5_4:+1792219 None:intergenic
ATTGACTGGCTTCAAAGAGA+TGG 0.561865 5_4:-1793577 Msa0828840:CDS
AGCTAATCTAGGAGGAGGAC+TGG 0.562398 5_4:+1792870 None:intergenic
CATATGATTTACTCCATGCA+TGG 0.564822 5_4:-1791933 Msa0828840:CDS
TATTAAGTGGCCACAGAGCA+GGG 0.564844 5_4:-1794517 Msa0828840:CDS
TACATTATACCCAAATTGAA+GGG 0.566049 5_4:+1791359 None:intergenic
AGAGAAATGAGTGCTCTTGT+CGG 0.566692 5_4:-1793451 Msa0828840:CDS
GACATTGCCCTCCTGCAGAA+AGG 0.567595 5_4:-1794676 Msa0828840:CDS
CTTTCAACATATAAATGTCG+AGG 0.569755 5_4:-1795627 Msa0828840:exon
GAGAATTACTGGAATCTCAT+GGG 0.573452 5_4:-1792363 Msa0828840:CDS
GCAGAATAATGAATATCCAA+TGG 0.576552 5_4:+1791381 None:intergenic
AGTTGCTTCCGTTTGTGGTG+TGG 0.577218 5_4:-1795572 Msa0828840:CDS
ATAATCTTAACAACGAAGGA+AGG 0.581153 5_4:-1793822 Msa0828840:CDS
TCACTCCCCAAACTGCATCT+GGG 0.584921 5_4:+1793302 None:intergenic
TAAGAACACGGTCAAGCTCA+AGG 0.587724 5_4:+1793545 None:intergenic
TCATAGGGACTACTCATGAC+TGG 0.590688 5_4:-1792185 Msa0828840:intron
AGTTCTGACTCTGACCAAGA+TGG 0.591131 5_4:-1791733 Msa0828840:CDS
AACCTCCCGGCCTAAGAACA+CGG 0.591632 5_4:+1793533 None:intergenic
CACAACCATCCAGTTCTGGT+CGG 0.594717 5_4:+1794443 None:intergenic
CCTCCTAGATTAGCTGACCT+CGG 0.596239 5_4:-1792862 Msa0828840:CDS
GAAAATGAGTCCCTCCTCCA+GGG 0.596929 5_4:+1794400 None:intergenic
TTGTACCGCCTTTCTGCAGG+AGG 0.598133 5_4:+1794668 None:intergenic
AGGGTGCTTGGTCCATAAGG+TGG 0.601824 5_4:+1792231 None:intergenic
ATATAGCAATCATTCGTGAG+AGG 0.609703 5_4:+1793373 None:intergenic
AGGTCAGCTAATCTAGGAGG+AGG 0.611600 5_4:+1792865 None:intergenic
TATTCGACAGAGGACTCATA+GGG 0.614481 5_4:-1792200 Msa0828840:CDS
GAGTAAGCAAAATAACCTCC+CGG 0.617833 5_4:+1793520 None:intergenic
GGAGGACTGGTCAACCTCGA+AGG 0.618418 5_4:+1792883 None:intergenic
GACAATAATCTTAACAACGA+AGG 0.621640 5_4:-1793826 Msa0828840:CDS
TTTAGTGCAGGGAGATACGT+TGG 0.622149 5_4:-1795386 Msa0828840:CDS
AGGAGAAAATCACAACTACA+TGG 0.624728 5_4:-1791639 Msa0828840:three_prime_UTR
ATGGATATGAAAGCAAACTT+GGG 0.628657 5_4:-1792306 Msa0828840:CDS
GAAGTCCGACCAGAACTGGA+TGG 0.636178 5_4:-1794448 Msa0828840:CDS
CATACCTCCTCCCTGCTCTG+TGG 0.637487 5_4:+1794507 None:intergenic
CTGATGATTATGAAACCGGT+AGG 0.638274 5_4:+1791835 None:intergenic
GACGACCCAGATGCAGTTTG+GGG 0.638692 5_4:-1793307 Msa0828840:CDS
AGCATATGCTCAGGACGAAG+AGG 0.639173 5_4:-1793488 Msa0828840:CDS
CTTAGAATTGTATTCGACAG+AGG 0.641862 5_4:-1792210 Msa0828840:CDS
TCATCAGACTGGCAAAGAGG+AGG 0.642219 5_4:+1793328 None:intergenic
AGACTTCACTTGAAATGCCG+AGG 0.643353 5_4:+1792845 None:intergenic
TCAGATGACAACAGAGCACA+GGG 0.647827 5_4:-1792925 Msa0828840:intron
TGTACCGCCTTTCTGCAGGA+GGG 0.650346 5_4:+1794669 None:intergenic
AGGGTAGTGAATTAGCTCCA+TGG 0.651252 5_4:-1792906 Msa0828840:CDS
TCTTTCACCTTGTATCCTGG+GGG 0.654168 5_4:+1794629 None:intergenic
GAATCTTCGAGTTTAGTGCA+GGG 0.654895 5_4:-1795397 Msa0828840:CDS
TACCGGTTTCATAATCATCA+GGG 0.654964 5_4:-1791833 Msa0828840:CDS
ACGGAATCAACTCTGAGTGA+CGG 0.659026 5_4:+1794768 None:intergenic
TCGTCATCAGACTGGCAAAG+AGG 0.659055 5_4:+1793325 None:intergenic
CCGAGGTCAGCTAATCTAGG+AGG 0.660326 5_4:+1792862 None:intergenic
TCTGTCGAATACAATTCTAA+GGG 0.660348 5_4:+1792212 None:intergenic
CAGAACTGGATGGTTGTGAA+AGG 0.663525 5_4:-1794438 Msa0828840:CDS
AAAATCGTTGAAAAGACTTG+GGG 0.671264 5_4:-1795467 Msa0828840:CDS
GGAGTAAATCATATGTTCGG+GGG 0.671504 5_4:+1791941 None:intergenic
AAATCTCATCGAACACTGTG+AGG 0.672324 5_4:-1792335 Msa0828840:CDS
ATAAGATGTCTGTCTAAACA+CGG 0.674016 5_4:+1794749 None:intergenic
GACCGTGTTCTTAGGCCGGG+AGG 0.680320 5_4:-1793535 Msa0828840:CDS
TGAAGTCTTCGAAAAGGACA+CGG 0.691182 5_4:-1792830 Msa0828840:intron
ATTGCCCTCCTGCAGAAAGG+CGG 0.694643 5_4:-1794673 Msa0828840:CDS
TTCAACATATAAATGTCGAG+GGG 0.701953 5_4:-1795625 Msa0828840:exon
AAGGAATTAACAGCATCACA+TGG 0.703586 5_4:-1791557 Msa0828840:three_prime_UTR
TGGAGTAAATCATATGTTCG+GGG 0.714419 5_4:+1791940 None:intergenic
TAAGTGGCCACAGAGCAGGG+AGG 0.775323 5_4:-1794514 Msa0828840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAATTTGAAAATATTG+TGG - chr5_4:1792280-1792299 Msa0828840:CDS 10.0%
!! TTAAAATCTTATCTATATAT+CGG - chr5_4:1792940-1792959 Msa0828840:intron 10.0%
!! AAAAAAAAACATGAAAATGA+AGG + chr5_4:1791451-1791470 None:intergenic 15.0%
!! ATTAATTGCATTTAATTATG+TGG - chr5_4:1791586-1791605 Msa0828840:three_prime_UTR 15.0%
!!! ATTTAAATTTTATACACTGT+CGG - chr5_4:1791941-1791960 Msa0828840:CDS 15.0%
!! TTAATTATGCAATTAAGAAT+CGG + chr5_4:1793125-1793144 None:intergenic 15.0%
!!! TTTTTATTTTGTTGTTTCTT+TGG - chr5_4:1793502-1793521 Msa0828840:CDS 15.0%
!! AAATAAAAAATCATGAGAAA+AGG + chr5_4:1794819-1794838 None:intergenic 15.0%
!! TAACTGAATAATATAGAAAA+AGG + chr5_4:1796008-1796027 None:intergenic 15.0%
!! TTTATTAGATGCTAATAATG+TGG - chr5_4:1791519-1791538 Msa0828840:three_prime_UTR 20.0%
!!! AGATTTTGTATCATTTTCAT+TGG - chr5_4:1791653-1791672 Msa0828840:exon 20.0%
!!! AATGTTTTACATTGTTAACA+AGG - chr5_4:1791969-1791988 Msa0828840:intron 20.0%
!!! ATATTTCTTTAAAGATCTGA+TGG - chr5_4:1792042-1792061 Msa0828840:intron 20.0%
!! TCAAATATATTACACACTTT+AGG - chr5_4:1792240-1792259 Msa0828840:CDS 20.0%
!!! ATTTTATCTCTTATCTCTTA+TGG - chr5_4:1792867-1792886 Msa0828840:CDS 20.0%
!!! ATATTTGCTAATGATATTCA+AGG + chr5_4:1792912-1792931 None:intergenic 20.0%
!! TTAATATTAACATCTAGTCT+CGG + chr5_4:1793456-1793475 None:intergenic 20.0%
!! AAATAAAAACGCTATTCAAT+AGG + chr5_4:1793491-1793510 None:intergenic 20.0%
!!! ATACATTCATACTTTTTACT+CGG - chr5_4:1794068-1794087 Msa0828840:intron 20.0%
!! TTATATATACTTCGATTTCA+TGG - chr5_4:1794149-1794168 Msa0828840:intron 20.0%
!! ATATAATATATAACACACCA+TGG + chr5_4:1794945-1794964 None:intergenic 20.0%
!! TTTCAAATAGTAACCATTAA+AGG + chr5_4:1795007-1795026 None:intergenic 20.0%
!! ATGAGATAATGAATAGTTAA+GGG + chr5_4:1795449-1795468 None:intergenic 20.0%
!! AATGAGATAATGAATAGTTA+AGG + chr5_4:1795450-1795469 None:intergenic 20.0%
!! AAAAAAGAATTGAGAATTAC+TGG - chr5_4:1795681-1795700 Msa0828840:five_prime_UTR 20.0%
!! AACTCTATAACTAAGTAAAA+GGG + chr5_4:1795967-1795986 None:intergenic 20.0%
!!! ATTGTTAAATTTCCTTCTTT+TGG - chr5_4:1796584-1796603 Msa0828840:intron 20.0%
! TTTGAGAAATGATGAAAAAG+AGG + chr5_4:1791201-1791220 None:intergenic 25.0%
! TAAGTAAGTGTTTGTTTGTT+TGG + chr5_4:1791239-1791258 None:intergenic 25.0%
!! TTTCTATCTTTTCTTTGATC+TGG - chr5_4:1791369-1791388 Msa0828840:three_prime_UTR 25.0%
!! ATGAATGTCAATTTTCTTGA+TGG - chr5_4:1791681-1791700 Msa0828840:CDS 25.0%
! GTAAAAATTCTTTACACAGA+CGG - chr5_4:1792083-1792102 Msa0828840:intron 25.0%
! ATGTTGAAAGTAAGACAAAT+CGG + chr5_4:1792418-1792437 None:intergenic 25.0%
! TTTCAACATATAAATGTCGA+GGG - chr5_4:1792429-1792448 Msa0828840:intron 25.0%
!! AATATAATACAAGAGGCATA+AGG + chr5_4:1792771-1792790 None:intergenic 25.0%
! TATATGTTCATGCATAAGTA+AGG - chr5_4:1793153-1793172 Msa0828840:intron 25.0%
! ATATGTTCATGCATAAGTAA+GGG - chr5_4:1793154-1793173 Msa0828840:intron 25.0%
! AATAGTGTATCACATAACAA+TGG + chr5_4:1793906-1793925 None:intergenic 25.0%
! TGTTATGTGATACACTATTT+AGG - chr5_4:1793907-1793926 Msa0828840:intron 25.0%
! TTGTCAAATAGCATCTATAA+CGG - chr5_4:1793938-1793957 Msa0828840:intron 25.0%
!!! TACATTCATACTTTTTACTC+GGG - chr5_4:1794069-1794088 Msa0828840:intron 25.0%
! TTCGTTGTTAAGATTATTGT+CGG + chr5_4:1794230-1794249 None:intergenic 25.0%
!!! ATTCAATTTGCTTTAGAAAG+AGG - chr5_4:1794367-1794386 Msa0828840:CDS 25.0%
!!! CATCTGATAAAAAAGTGTTT+AGG + chr5_4:1795117-1795136 None:intergenic 25.0%
! CAAATTAAAACAGTAACAGA+AGG + chr5_4:1795272-1795291 None:intergenic 25.0%
!!! CTTCTGTTACTGTTTTAATT+TGG - chr5_4:1795270-1795289 Msa0828840:intron 25.0%
! AAACGACAATTTAAAAGGAA+TGG + chr5_4:1795323-1795342 None:intergenic 25.0%
! CTTCAAAACGACAATTTAAA+AGG + chr5_4:1795328-1795347 None:intergenic 25.0%
!!! CTTTTAAATTGTCGTTTTGA+AGG - chr5_4:1795326-1795345 Msa0828840:intron 25.0%
! ACAAAGTTTATTCATTTCCT+TGG + chr5_4:1795365-1795384 None:intergenic 25.0%
! CTATGAAACGAAAGTTAAAA+AGG - chr5_4:1795579-1795598 Msa0828840:CDS 25.0%
! GAAAGTTAAAAAGGAATAGA+TGG - chr5_4:1795588-1795607 Msa0828840:CDS 25.0%
!! TAACTTTTGTCATATGTTAC+AGG - chr5_4:1795649-1795668 Msa0828840:five_prime_UTR 25.0%
! TCTTAAAGACAAAGATGTTT+GGG - chr5_4:1795787-1795806 Msa0828840:five_prime_UTR 25.0%
!! AAATTAGTTTCAGGAAATCA+AGG + chr5_4:1795903-1795922 None:intergenic 25.0%
!! AGATGCAATAAATTAGTTTC+AGG + chr5_4:1795912-1795931 None:intergenic 25.0%
! GAACTCTATAACTAAGTAAA+AGG + chr5_4:1795968-1795987 None:intergenic 25.0%
! AAATAGTATGATACTTGAGA+TGG - chr5_4:1796033-1796052 Msa0828840:intron 25.0%
! TTCTTAACAAAATCAATCAC+AGG + chr5_4:1796256-1796275 None:intergenic 25.0%
! AAATAATTTCATTGCCATCT+TGG + chr5_4:1796339-1796358 None:intergenic 25.0%
! TACATTATACCCAAATTGAA+GGG + chr5_4:1796699-1796718 None:intergenic 25.0%
! TTACATTATACCCAAATTGA+AGG + chr5_4:1796700-1796719 None:intergenic 25.0%
!! TACATGAATTTTATTCTGCT+TGG - chr5_4:1796798-1796817 Msa0828840:five_prime_UTR 25.0%
!! ATACATACATTTCTTTTGCT+TGG - chr5_4:1796874-1796893 Msa0828840:five_prime_UTR 25.0%
AGAGAAATGAAGAAGTTACT+GGG + chr5_4:1791327-1791346 None:intergenic 30.0%
AAGAGAAATGAAGAAGTTAC+TGG + chr5_4:1791328-1791347 None:intergenic 30.0%
! CTGTTTCATTTTCATTCTGT+CGG - chr5_4:1791411-1791430 Msa0828840:three_prime_UTR 30.0%
ACTATCTTTGTGTTAGATCT+TGG - chr5_4:1791552-1791571 Msa0828840:three_prime_UTR 30.0%
!! TGTCAATTTTCTTGATGGTT+TGG - chr5_4:1791686-1791705 Msa0828840:CDS 30.0%
TAGAAATCCAAGAACTACTA+GGG + chr5_4:1791780-1791799 None:intergenic 30.0%
TCAAGACGACAAAATTGTAA+AGG - chr5_4:1792147-1792166 Msa0828840:intron 30.0%
CTTTCAACATATAAATGTCG+AGG - chr5_4:1792428-1792447 Msa0828840:intron 30.0%
TTCAACATATAAATGTCGAG+GGG - chr5_4:1792430-1792449 Msa0828840:intron 30.0%
GAAAATCGTTGAAAAGACTT+GGG - chr5_4:1792587-1792606 Msa0828840:intron 30.0%
AAAATCGTTGAAAAGACTTG+GGG - chr5_4:1792588-1792607 Msa0828840:intron 30.0%
TGCTCTCGAATAAATATACT+CGG + chr5_4:1792796-1792815 None:intergenic 30.0%
TCTAAGTTTGTCTTTGCTTA+TGG - chr5_4:1793208-1793227 Msa0828840:intron 30.0%
!!! GAAATGCTTTCTGTTTTTGA+AGG - chr5_4:1793254-1793273 Msa0828840:intron 30.0%
ATAAGATGTCTGTCTAAACA+CGG + chr5_4:1793309-1793328 None:intergenic 30.0%
CATCCATAAAATGAATGAAC+CGG + chr5_4:1794034-1794053 None:intergenic 30.0%
!! TACTTTTTACTCGGGTTAAT+AGG - chr5_4:1794077-1794096 Msa0828840:intron 30.0%
GACAATAATCTTAACAACGA+AGG - chr5_4:1794229-1794248 Msa0828840:intron 30.0%
ATAATCTTAACAACGAAGGA+AGG - chr5_4:1794233-1794252 Msa0828840:intron 30.0%
CAAGTTCAAAAGATCTACTT+GGG + chr5_4:1794438-1794457 None:intergenic 30.0%
TAGTAAGAAAGAAAACTCGA+AGG + chr5_4:1794851-1794870 None:intergenic 30.0%
AGTTAGTAGTAGCTCAAAAT+AGG + chr5_4:1794981-1795000 None:intergenic 30.0%
ACTACTAACTGAACCTTTAA+TGG - chr5_4:1794991-1795010 Msa0828840:intron 30.0%
AAGGTTATTTACACATACCA+AGG - chr5_4:1795345-1795364 Msa0828840:intron 30.0%
TATGAAAGCGAGAAGTAAAT+AGG - chr5_4:1795544-1795563 Msa0828840:CDS 30.0%
AATGGATATGAAAGCAAACT+TGG - chr5_4:1795748-1795767 Msa0828840:five_prime_UTR 30.0%
ATGGATATGAAAGCAAACTT+GGG - chr5_4:1795749-1795768 Msa0828840:five_prime_UTR 30.0%
CTCTTAAAGACAAAGATGTT+TGG - chr5_4:1795786-1795805 Msa0828840:five_prime_UTR 30.0%
TCTGTCGAATACAATTCTAA+GGG + chr5_4:1795846-1795865 None:intergenic 30.0%
CATGGAGAATATATTTGAAC+AGG - chr5_4:1796071-1796090 Msa0828840:intron 30.0%
ATGGAGTAAATCATATGTTC+GGG + chr5_4:1796119-1796138 None:intergenic 30.0%
CATGGAGTAAATCATATGTT+CGG + chr5_4:1796120-1796139 None:intergenic 30.0%
AGAAGATCTATTACTTGAGA+TGG - chr5_4:1796183-1796202 Msa0828840:intron 30.0%
TTGTTATCCAGAAGAAATTG+TGG - chr5_4:1796359-1796378 Msa0828840:intron 30.0%
ATATATTCTCTGCTGTTACA+AGG - chr5_4:1796479-1796498 Msa0828840:intron 30.0%
ATGAAATGAGAACCAAAAGA+AGG + chr5_4:1796599-1796618 None:intergenic 30.0%
CATTCTTATGATCATAATGC+AGG - chr5_4:1796622-1796641 Msa0828840:intron 30.0%
CAGGTTATTTATTAAGCCTT+AGG - chr5_4:1796641-1796660 Msa0828840:intron 30.0%
GAATATCCAATGGAAACATT+AGG + chr5_4:1796667-1796686 None:intergenic 30.0%
GCAGAATAATGAATATCCAA+TGG + chr5_4:1796677-1796696 None:intergenic 30.0%
ATTATTCTGCCCTTCAATTT+GGG - chr5_4:1796687-1796706 Msa0828840:five_prime_UTR 30.0%
!! GAGTGTGAAGAAGGTATTAT+CGG + chr5_4:1791265-1791284 None:intergenic 35.0%
AATGAAGAAGTTACTGGGTA+GGG + chr5_4:1791322-1791341 None:intergenic 35.0%
AAATGAAGAAGTTACTGGGT+AGG + chr5_4:1791323-1791342 None:intergenic 35.0%
ATCTGGTACATTTCACTATC+TGG - chr5_4:1791386-1791405 Msa0828840:three_prime_UTR 35.0%
TCTGGTACATTTCACTATCT+GGG - chr5_4:1791387-1791406 Msa0828840:three_prime_UTR 35.0%
CTAGAAATCCAAGAACTACT+AGG + chr5_4:1791781-1791800 None:intergenic 35.0%
CTAGTGATGTGAATTGTACT+TGG - chr5_4:1791797-1791816 Msa0828840:CDS 35.0%
TCAAAGGCTCACATAATCAA+AGG + chr5_4:1791857-1791876 None:intergenic 35.0%
AAAGATTAACCTGCAAGCAA+GGG + chr5_4:1792209-1792228 None:intergenic 35.0%
! TACACACTTTAGGAAGAATC+TGG - chr5_4:1792250-1792269 Msa0828840:CDS 35.0%
AATATTGTGGTTGCTAGTTC+AGG - chr5_4:1792293-1792312 Msa0828840:CDS 35.0%
!! TGTGTTTTGGATGGTGAATT+TGG - chr5_4:1792317-1792336 Msa0828840:CDS 35.0%
! GGTTTTCTATATGTGTTCCA+AGG - chr5_4:1792517-1792536 Msa0828840:intron 35.0%
!!! ACTATTTTGACCACCAAAGA+TGG + chr5_4:1792545-1792564 None:intergenic 35.0%
! ATCTTTGGTGGTCAAAATAG+TGG - chr5_4:1792544-1792563 Msa0828840:intron 35.0%
GGAAAATCGTTGAAAAGACT+TGG - chr5_4:1792586-1792605 Msa0828840:intron 35.0%
AATCTTACAGGGAAACTCTT+CGG + chr5_4:1792709-1792728 None:intergenic 35.0%
AGCTTGCACAAAATCTTACA+GGG + chr5_4:1792720-1792739 None:intergenic 35.0%
AAGCTTGCACAAAATCTTAC+AGG + chr5_4:1792721-1792740 None:intergenic 35.0%
CTCGGCAAATATAATACAAG+AGG + chr5_4:1792778-1792797 None:intergenic 35.0%
TGTCTTTGCTTATGGATCAT+TGG - chr5_4:1793216-1793235 Msa0828840:intron 35.0%
TATGGATCATTGGCAACTAA+TGG - chr5_4:1793226-1793245 Msa0828840:intron 35.0%
TATCTTTCACCTTGTATCCT+GGG + chr5_4:1793431-1793450 None:intergenic 35.0%
ATATCTTTCACCTTGTATCC+TGG + chr5_4:1793432-1793451 None:intergenic 35.0%
!! TGTTGTTTCTTTGGTGTTTC+AGG - chr5_4:1793511-1793530 Msa0828840:CDS 35.0%
!! TGTTTCAGGTTCCTATTAAG+TGG - chr5_4:1793525-1793544 Msa0828840:CDS 35.0%
! GGTGAAAAGATATTTTTCCC+TGG - chr5_4:1793638-1793657 Msa0828840:CDS 35.0%
! GAAAAGATATTTTTCCCTGG+AGG - chr5_4:1793641-1793660 Msa0828840:CDS 35.0%
!!! ACACCGGTTCATTCATTTTA+TGG - chr5_4:1794028-1794047 Msa0828840:intron 35.0%
! CGGTTCATTCATTTTATGGA+TGG - chr5_4:1794032-1794051 Msa0828840:intron 35.0%
TGATATCATTGCAATGTCCT+TGG - chr5_4:1794318-1794337 Msa0828840:intron 35.0%
!! TGATTTTGATGCACGTCATT+GGG + chr5_4:1794346-1794365 None:intergenic 35.0%
!! TTGATTTTGATGCACGTCAT+TGG + chr5_4:1794347-1794366 None:intergenic 35.0%
CAAAAGATCTACTTGGGTAA+GGG + chr5_4:1794432-1794451 None:intergenic 35.0%
TCAAAAGATCTACTTGGGTA+AGG + chr5_4:1794433-1794452 None:intergenic 35.0%
GCAAGTTCAAAAGATCTACT+TGG + chr5_4:1794439-1794458 None:intergenic 35.0%
ATATAGCAATCATTCGTGAG+AGG + chr5_4:1794685-1794704 None:intergenic 35.0%
TCTCACGAATGATTGCTATA+TGG - chr5_4:1794684-1794703 Msa0828840:CDS 35.0%
!! ATCATGAGAAAAGGTACTCA+CGG + chr5_4:1794810-1794829 None:intergenic 35.0%
TGTTGTCAAAATAGTAGCCA+TGG - chr5_4:1794925-1794944 Msa0828840:intron 35.0%
TTCAAGTGAAGTCTTCGAAA+AGG - chr5_4:1795219-1795238 Msa0828840:intron 35.0%
CGACAATTTAAAAGGAATGG+AGG + chr5_4:1795320-1795339 None:intergenic 35.0%
TCGCTGCGATAAATAGTTAA+GGG - chr5_4:1795483-1795502 Msa0828840:CDS 35.0%
GTCATATGTTACAGGAACTT+TGG - chr5_4:1795657-1795676 Msa0828840:five_prime_UTR 35.0%
TGAGAATTACTGGAATCTCA+TGG - chr5_4:1795691-1795710 Msa0828840:five_prime_UTR 35.0%
GAGAATTACTGGAATCTCAT+GGG - chr5_4:1795692-1795711 Msa0828840:five_prime_UTR 35.0%
! ACAGTGTTCGATGAGATTTT+TGG + chr5_4:1795719-1795738 None:intergenic 35.0%
ATGAATGTTGTTCCACCTTA+TGG - chr5_4:1795812-1795831 Msa0828840:five_prime_UTR 35.0%
!! AATACAATTCTAAGGGTGCT+TGG + chr5_4:1795839-1795858 None:intergenic 35.0%
CTCTGTCGAATACAATTCTA+AGG + chr5_4:1795847-1795866 None:intergenic 35.0%
CTTAGAATTGTATTCGACAG+AGG - chr5_4:1795845-1795864 Msa0828840:intron 35.0%
TGGAGTAAATCATATGTTCG+GGG + chr5_4:1796118-1796137 None:intergenic 35.0%
CATATGATTTACTCCATGCA+TGG - chr5_4:1796122-1796141 Msa0828840:intron 35.0%
!! TACCGGTTTCATAATCATCA+GGG - chr5_4:1796222-1796241 Msa0828840:intron 35.0%
ATCCCTGATGATTATGAAAC+CGG + chr5_4:1796227-1796246 None:intergenic 35.0%
AGTATCTAACAGCATTGCAT+TGG - chr5_4:1796275-1796294 Msa0828840:intron 35.0%
GTATCTAACAGCATTGCATT+GGG - chr5_4:1796276-1796295 Msa0828840:intron 35.0%
AGGAGAAAATCACAACTACA+TGG - chr5_4:1796416-1796435 Msa0828840:intron 35.0%
AAGGAATTAACAGCATCACA+TGG - chr5_4:1796498-1796517 Msa0828840:intron 35.0%
TATACTGCTTCCAGAACTAA+TGG + chr5_4:1796524-1796543 None:intergenic 35.0%
CATTATTCTGCCCTTCAATT+TGG - chr5_4:1796686-1796705 Msa0828840:intron 35.0%
CACATAGTAGATTGTCTTTG+TGG - chr5_4:1796737-1796756 Msa0828840:intron 35.0%
GTCTTTGTGGTGAAAAAGTT+AGG - chr5_4:1796750-1796769 Msa0828840:intron 35.0%
! TGAGATTTGGAGTGTGAAGA+AGG + chr5_4:1791274-1791293 None:intergenic 40.0%
GAAGAGAGAGAAGTGAGATT+TGG + chr5_4:1791287-1791306 None:intergenic 40.0%
TTAGTGACCCTAGTAGTTCT+TGG - chr5_4:1791770-1791789 Msa0828840:CDS 40.0%
CAAAGATTAACCTGCAAGCA+AGG + chr5_4:1792210-1792229 None:intergenic 40.0%
!!! TGCTAGTTCAGGTTGTGTTT+TGG - chr5_4:1792304-1792323 Msa0828840:CDS 40.0%
!!! AGTTCAGGTTGTGTTTTGGA+TGG - chr5_4:1792308-1792327 Msa0828840:CDS 40.0%
GGTTCATCTACAGCTGAATA+TGG - chr5_4:1792565-1792584 Msa0828840:intron 40.0%
! TGAATCTTCGAGTTTAGTGC+AGG - chr5_4:1792657-1792676 Msa0828840:intron 40.0%
! GAATCTTCGAGTTTAGTGCA+GGG - chr5_4:1792658-1792677 Msa0828840:intron 40.0%
! GACTTTTTGCTACCACTGTT+TGG + chr5_4:1792822-1792841 None:intergenic 40.0%
TAGAATGACGATCACAACCT+TGG + chr5_4:1793192-1793211 None:intergenic 40.0%
CTATCAAATGAGACTGAAGC+TGG - chr5_4:1793329-1793348 Msa0828840:CDS 40.0%
ATCTTTCACCTTGTATCCTG+GGG + chr5_4:1793430-1793449 None:intergenic 40.0%
! TCTTTTGCAAGGTGAGTATG+TGG + chr5_4:1793587-1793606 None:intergenic 40.0%
! AAGATATTTTTCCCTGGAGG+AGG - chr5_4:1793644-1793663 Msa0828840:CDS 40.0%
! AGATATTTTTCCCTGGAGGA+GGG - chr5_4:1793645-1793664 Msa0828840:CDS 40.0%
TTGCAGCAATCGCAAATGTA+AGG - chr5_4:1793699-1793718 Msa0828840:CDS 40.0%
! TAATAGGCTTTTCAGTGCCA+TGG - chr5_4:1794093-1794112 Msa0828840:intron 40.0%
ACAACCTACATTGTCTACCA+TGG + chr5_4:1794113-1794132 None:intergenic 40.0%
!!! AAGTTTTGGGGCTTATCTTC+TGG - chr5_4:1794291-1794310 Msa0828840:intron 40.0%
AGAGGAATTCCTGCATATCT+TGG - chr5_4:1794385-1794404 Msa0828840:CDS 40.0%
!! CTCTTTGAAGCCAGTCAATT+CGG + chr5_4:1794477-1794496 None:intergenic 40.0%
!! ATTGACTGGCTTCAAAGAGA+TGG - chr5_4:1794478-1794497 Msa0828840:CDS 40.0%
GAGTAAGCAAAATAACCTCC+CGG + chr5_4:1794538-1794557 None:intergenic 40.0%
ACGAAGAGGATTTGAGGATA+TGG - chr5_4:1794581-1794600 Msa0828840:intron 40.0%
AGAGAAATGAGTGCTCTTGT+CGG - chr5_4:1794604-1794623 Msa0828840:intron 40.0%
TGCTATATGGAAAGAGAACC+TGG - chr5_4:1794697-1794716 Msa0828840:CDS 40.0%
! GAAAGAAAACTCGAAGGCAT+AGG + chr5_4:1794845-1794864 None:intergenic 40.0%
TGAAGTCTTCGAAAAGGACA+CGG - chr5_4:1795225-1795244 Msa0828840:intron 40.0%
TTCGAAAAGGACACGGTAAT+TGG - chr5_4:1795232-1795251 Msa0828840:intron 40.0%
CTCGCTGCGATAAATAGTTA+AGG - chr5_4:1795482-1795501 Msa0828840:CDS 40.0%
AAATCTCATCGAACACTGTG+AGG - chr5_4:1795720-1795739 Msa0828840:five_prime_UTR 40.0%
GAACACTGTGAGGAACATAA+TGG - chr5_4:1795730-1795749 Msa0828840:five_prime_UTR 40.0%
TATTCGACAGAGGACTCATA+GGG - chr5_4:1795855-1795874 Msa0828840:intron 40.0%
AGAGTTCCACGTTGTACATA+AGG - chr5_4:1795981-1796000 Msa0828840:intron 40.0%
AAAGGACCTTATGTACAACG+TGG + chr5_4:1795990-1796009 None:intergenic 40.0%
TTCTCCATGCGTCAGAAAAA+TGG + chr5_4:1796060-1796079 None:intergenic 40.0%
GGAGTAAATCATATGTTCGG+GGG + chr5_4:1796117-1796136 None:intergenic 40.0%
CGCTTGTACGTCAGAAAAAA+CGG + chr5_4:1796149-1796168 None:intergenic 40.0%
ATTACTTGAGATGGACCGTT+TGG - chr5_4:1796192-1796211 Msa0828840:intron 40.0%
CTGATGATTATGAAACCGGT+AGG + chr5_4:1796223-1796242 None:intergenic 40.0%
!! CTACCGGTTTCATAATCATC+AGG - chr5_4:1796221-1796240 Msa0828840:intron 40.0%
TAGTGAGCCACAATTTCTTC+TGG + chr5_4:1796369-1796388 None:intergenic 40.0%
CAATGGAAACATTAGGCCTA+AGG + chr5_4:1796660-1796679 None:intergenic 40.0%
CTTAGGCCTAATGTTTCCAT+TGG - chr5_4:1796658-1796677 Msa0828840:intron 40.0%
GCCTTTGATCAAGCTTTGCT+AGG - chr5_4:1791869-1791888 Msa0828840:CDS 45.0%
GCCTAGCAAAGCTTGATCAA+AGG + chr5_4:1791873-1791892 None:intergenic 45.0%
CGTTTAGTTGCTTCCGTTTG+TGG - chr5_4:1792478-1792497 Msa0828840:intron 45.0%
!! AAAGAGTGCCACACCACAAA+CGG + chr5_4:1792494-1792513 None:intergenic 45.0%
GTGTTCCAAGGATCCATCTT+TGG - chr5_4:1792529-1792548 Msa0828840:intron 45.0%
TTCCAAGGATCCATCTTTGG+TGG - chr5_4:1792532-1792551 Msa0828840:intron 45.0%
!! AAGACTTGGGGCATCGTATT+TGG - chr5_4:1792600-1792619 Msa0828840:intron 45.0%
!! AGACTTGGGGCATCGTATTT+GGG - chr5_4:1792601-1792620 Msa0828840:intron 45.0%
TTTAGTGCAGGGAGATACGT+TGG - chr5_4:1792669-1792688 Msa0828840:intron 45.0%
ACGGAATCAACTCTGAGTGA+CGG + chr5_4:1793290-1793309 None:intergenic 45.0%
GAAGCTGGATCTTTCTGTGA+TGG - chr5_4:1793344-1793363 Msa0828840:CDS 45.0%
TCTTTCACCTTGTATCCTGG+GGG + chr5_4:1793429-1793448 None:intergenic 45.0%
TATTAAGTGGCCACAGAGCA+GGG - chr5_4:1793538-1793557 Msa0828840:CDS 45.0%
CTTTCACAACCATCCAGTTC+TGG + chr5_4:1793619-1793638 None:intergenic 45.0%
CAGAACTGGATGGTTGTGAA+AGG - chr5_4:1793617-1793636 Msa0828840:CDS 45.0%
! GGAGGGACTCATTTTCACTA+CGG - chr5_4:1793662-1793681 Msa0828840:CDS 45.0%
! GCTATAGCACTGTTGCTTAG+CGG - chr5_4:1793962-1793981 Msa0828840:intron 45.0%
GTGTTGTCAATCACGGATCA+CGG + chr5_4:1794012-1794031 None:intergenic 45.0%
TGATCCGTGATTGACAACAC+CGG - chr5_4:1794012-1794031 Msa0828840:intron 45.0%
!! TGAACCGGTGTTGTCAATCA+CGG + chr5_4:1794019-1794038 None:intergenic 45.0%
AGTGCCATGGTAGACAATGT+AGG - chr5_4:1794106-1794125 Msa0828840:intron 45.0%
TGTCGGTAAAGTTGAGCATC+TGG + chr5_4:1794213-1794232 None:intergenic 45.0%
CTGCGAACTGTTCTTGATGT+TGG - chr5_4:1794256-1794275 Msa0828840:intron 45.0%
! ACTGTTCTTGATGTTGGCTG+TGG - chr5_4:1794262-1794281 Msa0828840:intron 45.0%
!!! GCTGTGGTGTTGCAAGTTTT+GGG - chr5_4:1794278-1794297 Msa0828840:intron 45.0%
!!! CTGTGGTGTTGCAAGTTTTG+GGG - chr5_4:1794279-1794298 Msa0828840:intron 45.0%
!! TCCTGCATATCTTGGTGTCT+TGG - chr5_4:1794393-1794412 Msa0828840:CDS 45.0%
!! CCTGCATATCTTGGTGTCTT+GGG - chr5_4:1794394-1794413 Msa0828840:CDS 45.0%
TAAGAACACGGTCAAGCTCA+AGG + chr5_4:1794513-1794532 None:intergenic 45.0%
TTGAGCTTGACCGTGTTCTT+AGG - chr5_4:1794512-1794531 Msa0828840:CDS 45.0%
AGAGAGACCAAACTGTCATC+TGG - chr5_4:1794653-1794672 Msa0828840:CDS 45.0%
GTTTCTGCCAGATGACAGTT+TGG + chr5_4:1794663-1794682 None:intergenic 45.0%
TGCAGTTTGGGGAGTGAATA+TGG - chr5_4:1794759-1794778 Msa0828840:CDS 45.0%
ATCAGATGACAACAGAGCAC+AGG - chr5_4:1795129-1795148 Msa0828840:intron 45.0%
TCAGATGACAACAGAGCACA+GGG - chr5_4:1795130-1795149 Msa0828840:intron 45.0%
AGGGTAGTGAATTAGCTCCA+TGG - chr5_4:1795149-1795168 Msa0828840:intron 45.0%
AGACTTCACTTGAAATGCCG+AGG + chr5_4:1795213-1795232 None:intergenic 45.0%
GTATTCGACAGAGGACTCAT+AGG - chr5_4:1795854-1795873 Msa0828840:intron 45.0%
TCATAGGGACTACTCATGAC+TGG - chr5_4:1795870-1795889 Msa0828840:intron 45.0%
!! TGGACCATTTTTCTGACGCA+TGG - chr5_4:1796053-1796072 Msa0828840:intron 45.0%
CAGAAAAAACGGTCCATGCA+TGG + chr5_4:1796138-1796157 None:intergenic 45.0%
TTGAGATGGACCGTTTGGTT+AGG - chr5_4:1796197-1796216 Msa0828840:intron 45.0%
ATCTTGGTCAGAGTCAGAAC+TGG + chr5_4:1796323-1796342 None:intergenic 45.0%
! AGTTCTGACTCTGACCAAGA+TGG - chr5_4:1796322-1796341 Msa0828840:intron 45.0%
GCTCACTACTGAAAGCCTTA+GGG - chr5_4:1796381-1796400 Msa0828840:intron 45.0%
CATCACATGGCCATTAGTTC+TGG - chr5_4:1796511-1796530 Msa0828840:intron 45.0%
ACTACTGTTCCCTTGCTTGC+AGG - chr5_4:1792197-1792216 Msa0828840:CDS 50.0%
AGTTGCTTCCGTTTGTGGTG+TGG - chr5_4:1792483-1792502 Msa0828840:intron 50.0%
TGTGGTGTGGCACTCTTTCT+CGG - chr5_4:1792496-1792515 Msa0828840:intron 50.0%
GACCACCAAAGATGGATCCT+TGG + chr5_4:1792537-1792556 None:intergenic 50.0%
TCGAGAGCAACACCAAACAG+TGG - chr5_4:1792807-1792826 Msa0828840:intron 50.0%
CAATTGTACCGCCTTTCTGC+AGG + chr5_4:1793393-1793412 None:intergenic 50.0%
CTGCTCTGTGGCCACTTAAT+AGG + chr5_4:1793539-1793558 None:intergenic 50.0%
CTATTAAGTGGCCACAGAGC+AGG - chr5_4:1793537-1793556 Msa0828840:CDS 50.0%
! GGTCGGACTTCTCTTTTGCA+AGG + chr5_4:1793598-1793617 None:intergenic 50.0%
AAGAGAAGTCCGACCAGAAC+TGG - chr5_4:1793603-1793622 Msa0828840:CDS 50.0%
! CACAACCATCCAGTTCTGGT+CGG + chr5_4:1793615-1793634 None:intergenic 50.0%
GAAAATGAGTCCCTCCTCCA+GGG + chr5_4:1793658-1793677 None:intergenic 50.0%
TGAAAATGAGTCCCTCCTCC+AGG + chr5_4:1793659-1793678 None:intergenic 50.0%
!!! GGCTGTGGTGTTGCAAGTTT+TGG - chr5_4:1794277-1794296 Msa0828840:intron 50.0%
CCCAAGACACCAAGATATGC+AGG + chr5_4:1794397-1794416 None:intergenic 50.0%
ACTTGGGTAAGGGAGTCTCT+TGG + chr5_4:1794422-1794441 None:intergenic 50.0%
GTTCTCGTTGCCGAATTGAC+TGG - chr5_4:1794464-1794483 Msa0828840:CDS 50.0%
! GTCTCCAGAAGCATATGCTC+AGG - chr5_4:1794558-1794577 Msa0828840:intron 50.0%
TCGTCCTGAGCATATGCTTC+TGG + chr5_4:1794565-1794584 None:intergenic 50.0%
AGCATATGCTCAGGACGAAG+AGG - chr5_4:1794567-1794586 Msa0828840:intron 50.0%
CTCAGGACGAAGAGGATTTG+AGG - chr5_4:1794575-1794594 Msa0828840:intron 50.0%
TCATCAGACTGGCAAAGAGG+AGG + chr5_4:1794730-1794749 None:intergenic 50.0%
TCGTCATCAGACTGGCAAAG+AGG + chr5_4:1794733-1794752 None:intergenic 50.0%
ATGACGACCCAGATGCAGTT+TGG - chr5_4:1794746-1794765 Msa0828840:CDS 50.0%
TGACGACCCAGATGCAGTTT+GGG - chr5_4:1794747-1794766 Msa0828840:CDS 50.0%
TCACTCCCCAAACTGCATCT+GGG + chr5_4:1794756-1794775 None:intergenic 50.0%
TTCACTCCCCAAACTGCATC+TGG + chr5_4:1794757-1794776 None:intergenic 50.0%
AGGTACTCACGGTCAGAGTA+AGG + chr5_4:1794799-1794818 None:intergenic 50.0%
AATTAGCTCCATGGCCTTCG+AGG - chr5_4:1795158-1795177 Msa0828840:intron 50.0%
AGCTAATCTAGGAGGAGGAC+TGG + chr5_4:1795188-1795207 None:intergenic 50.0%
AGGTCAGCTAATCTAGGAGG+AGG + chr5_4:1795193-1795212 None:intergenic 50.0%
! CCTCCTAGATTAGCTGACCT+CGG - chr5_4:1795193-1795212 Msa0828840:intron 50.0%
ATGCCGAGGTCAGCTAATCT+AGG + chr5_4:1795199-1795218 None:intergenic 50.0%
!! CTAAGGGTGCTTGGTCCATA+AGG + chr5_4:1795830-1795849 None:intergenic 50.0%
AACCGGTAGGCCTAACCAAA+CGG + chr5_4:1796210-1796229 None:intergenic 50.0%
GGCTCACTACTGAAAGCCTT+AGG - chr5_4:1796380-1796399 Msa0828840:intron 50.0%
CCTATTCTGCTGCATCCCTA+AGG + chr5_4:1796399-1796418 None:intergenic 50.0%
CCTTAGGGATGCAGCAGAAT+AGG - chr5_4:1796396-1796415 Msa0828840:intron 50.0%
ATGTCGAGGGGCAGATCTGA+TGG - chr5_4:1792442-1792461 Msa0828840:intron 55.0%
GACATTGCCCTCCTGCAGAA+AGG - chr5_4:1793379-1793398 Msa0828840:CDS 55.0%
ATTGCCCTCCTGCAGAAAGG+CGG - chr5_4:1793382-1793401 Msa0828840:CDS 55.0%
TGTACCGCCTTTCTGCAGGA+GGG + chr5_4:1793389-1793408 None:intergenic 55.0%
TTGTACCGCCTTTCTGCAGG+AGG + chr5_4:1793390-1793409 None:intergenic 55.0%
TTCACCTTGTATCCTGGGGG+AGG + chr5_4:1793426-1793445 None:intergenic 55.0%
GAAGTCCGACCAGAACTGGA+TGG - chr5_4:1793607-1793626 Msa0828840:CDS 55.0%
ACCGCTGCAATGCAAAGCAG+CGG - chr5_4:1793732-1793751 Msa0828840:CDS 55.0%
! TCCGCTGCTTTGCATTGCAG+CGG + chr5_4:1793736-1793755 None:intergenic 55.0%
ATGCACGTCATTGGGTGCCA+AGG + chr5_4:1794338-1794357 None:intergenic 55.0%
GCTTGACCGTGTTCTTAGGC+CGG - chr5_4:1794516-1794535 Msa0828840:CDS 55.0%
CTTGACCGTGTTCTTAGGCC+GGG - chr5_4:1794517-1794536 Msa0828840:CDS 55.0%
AACCTCCCGGCCTAAGAACA+CGG + chr5_4:1794525-1794544 None:intergenic 55.0%
CTCTTGTCGGACGCATGTGT+TGG - chr5_4:1794617-1794636 Msa0828840:intron 55.0%
CAAAGAGGAGGACGAGTACC+AGG + chr5_4:1794718-1794737 None:intergenic 55.0%
CATCTGGGTCGTCATCAGAC+TGG + chr5_4:1794741-1794760 None:intergenic 55.0%
GACGACCCAGATGCAGTTTG+GGG - chr5_4:1794748-1794767 Msa0828840:CDS 55.0%
CCGAGGTCAGCTAATCTAGG+AGG + chr5_4:1795196-1795215 None:intergenic 55.0%
! AGGGTGCTTGGTCCATAAGG+TGG + chr5_4:1795827-1795846 None:intergenic 55.0%
GACCGTTTGGTTAGGCCTAC+CGG - chr5_4:1796205-1796224 Msa0828840:intron 55.0%
AAGGGACGACAGCATCGCCA+AGG - chr5_4:1793172-1793191 Msa0828840:intron 60.0%
TGCTTGATTCCTCCTCCCCC+AGG - chr5_4:1793411-1793430 Msa0828840:CDS 60.0%
TCCTCCTCCCCCAGGATACA+AGG - chr5_4:1793419-1793438 Msa0828840:CDS 60.0%
ACCTTGTATCCTGGGGGAGG+AGG + chr5_4:1793423-1793442 None:intergenic 60.0%
TAAGTGGCCACAGAGCAGGG+AGG - chr5_4:1793541-1793560 Msa0828840:CDS 60.0%
CATACCTCCTCCCTGCTCTG+TGG + chr5_4:1793551-1793570 None:intergenic 60.0%
CACAGAGCAGGGAGGAGGTA+TGG - chr5_4:1793549-1793568 Msa0828840:CDS 60.0%
CTGGTCAACCTCGAAGGCCA+TGG + chr5_4:1795169-1795188 None:intergenic 60.0%
!! GGAGGACTGGTCAACCTCGA+AGG + chr5_4:1795175-1795194 None:intergenic 60.0%
GACCGTGTTCTTAGGCCGGG+AGG - chr5_4:1794520-1794539 Msa0828840:CDS 65.0%
GTGGCCACAGAGCAGGGAGG+AGG - chr5_4:1793544-1793563 Msa0828840:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 1791180 1796897 1791180 ID=Msa0828840;Name=Msa0828840
chr5_4 mRNA 1791180 1796897 1791180 ID=Msa0828840-mRNA-1;Parent=Msa0828840;Name=Msa0828840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=405|1|1|1|0.75|0.66|9|480|626
chr5_4 exon 1791180 1791984 1791180 ID=Msa0828840-mRNA-1:exon:485;Parent=Msa0828840-mRNA-1
chr5_4 exon 1792186 1792406 1792186 ID=Msa0828840-mRNA-1:exon:484;Parent=Msa0828840-mRNA-1
chr5_4 exon 1792831 1792943 1792831 ID=Msa0828840-mRNA-1:exon:483;Parent=Msa0828840-mRNA-1
chr5_4 exon 1793269 1793863 1793269 ID=Msa0828840-mRNA-1:exon:482;Parent=Msa0828840-mRNA-1
chr5_4 exon 1794362 1794544 1794362 ID=Msa0828840-mRNA-1:exon:481;Parent=Msa0828840-mRNA-1
chr5_4 exon 1794637 1794801 1794637 ID=Msa0828840-mRNA-1:exon:480;Parent=Msa0828840-mRNA-1
chr5_4 exon 1795357 1795858 1795357 ID=Msa0828840-mRNA-1:exon:479;Parent=Msa0828840-mRNA-1
chr5_4 exon 1796687 1796745 1796687 ID=Msa0828840-mRNA-1:exon:478;Parent=Msa0828840-mRNA-1
chr5_4 exon 1796775 1796897 1796775 ID=Msa0828840-mRNA-1:exon:477;Parent=Msa0828840-mRNA-1
chr5_4 five_prime_UTR 1796775 1796897 1796775 ID=Msa0828840-mRNA-1:five_prime_utr;Parent=Msa0828840-mRNA-1
chr5_4 five_prime_UTR 1796687 1796745 1796687 ID=Msa0828840-mRNA-1:five_prime_utr;Parent=Msa0828840-mRNA-1
chr5_4 five_prime_UTR 1795636 1795858 1795636 ID=Msa0828840-mRNA-1:five_prime_utr;Parent=Msa0828840-mRNA-1
chr5_4 CDS 1795357 1795635 1795357 ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4 CDS 1794637 1794801 1794637 ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4 CDS 1794362 1794544 1794362 ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4 CDS 1793269 1793863 1793269 ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4 CDS 1792831 1792943 1792831 ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4 CDS 1792186 1792406 1792186 ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4 CDS 1791660 1791984 1791660 ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4 three_prime_UTR 1791180 1791659 1791180 ID=Msa0828840-mRNA-1:three_prime_utr;Parent=Msa0828840-mRNA-1
Gene Sequence

>Msa0828840

ATGTCGAGGGGCAGATCTGATGGATCGCAAAAGAAGCGTTTAGTTGCTTCCGTTTGTGGTGTGGCACTCTTTCTCGGTTTTCTATATGTGTTCCAAGGATCCATCTTTGGTGGTCAAAATAGTGGTTCATCTACAGCTGAATATGGAAAATCGTTGAAAAGACTTGGGGCATCGTATTTGGGTGCAGATGAAGATGCAGATAACAAGCAACAAGATGAATCTTCGAGTTTAGTGCAGGGAGATACGTTGGCTGATGATATTGTGCCGAAGAGTTTCCCTGTTTGTGATGACCGTCACTCAGAGTTGATTCCGTGTTTAGACAGACATCTTATCTATCAAATGAGACTGAAGCTGGATCTTTCTGTGATGGAACACTACGAGAGACATTGCCCTCCTGCAGAAAGGCGGTACAATTGCTTGATTCCTCCTCCCCCAGGATACAAGGTTCCTATTAAGTGGCCACAGAGCAGGGAGGAGGTATGGAAAGTAAATATACCACATACTCACCTTGCAAAAGAGAAGTCCGACCAGAACTGGATGGTTGTGAAAGGTGAAAAGATATTTTTCCCTGGAGGAGGGACTCATTTTCACTACGGAGCTGATAAGTACATTGCAGCAATCGCAAATATGCTCAACTTTACCGACAATAATCTTAACAACGAAGGAAGGCTGCGAACTGTTCTTGATGTTGGCTGTGGTGTTGCAAGTTTTGGGGCTTATCTTCTGGCATCTGATATCATTGCAATGTCCTTGGCACCCAATGACGTGCATCAAAATCAAATTCAATTTGCTTTAGAAAGAGGAATTCCTGCATATCTTGGTGTCTTGGGAACCAAGAGACTCCCTTACCCAAGTAGATCTTTTGAACTTGCACATTGTTCTCGTTGCCGAATTGACTGGCTTCAAAGAGATGGAATACTACTCCTTGAGCTTGACCGTGTTCTTAGGCCGGGAGGTTATTTTGCTTACTCGTCTCCAGAAGCATATGCTCAGGACGAAGAGGATTTGAGGATATGGAGAGAAATGAGTGCTCTTGTCGGACGCATGTGTTGGAGAATTGCTTCAAAGAGAGACCAAACTGTCATCTGGCAGAAACCTCTCACGAATGATTGCTATATGGAAAGAGAACCTGGTACTCGTCCTCCTCTTTGCCAGTCTGATGACGACCCAGATGCAGTTTGGGGAGTGAATATGGAAACTTGCATAACACCTTACTCTGACCATGACAACAGAGCACAGGGTAGTGAATTAGCTCCATGGCCTTCGAGGTTGACCAGTCCTCCTCCTAGATTAGCTGACCTCGGCATTTCAAGTGAAGTCTTCGAAAAGGACACGGAACTTTGGCAAAAAAGAATTGAGAATTACTGGAATCTCATGGGTCCAAAAATCTCATCGAACACTGTGAGGAACATAATGGATATGAAAGCAAACTTGGGTTCATTTGCAGCTGCTCTTAAAGACAAAGATGTTTGGGTGATGAATGTTGTTCCACCTTATGGACCAAGCACCCTTAGAATTGTATTCGACAGAGGACTCATAGGGACTACTCATGACTGGTGTGAAGCATTTTCAACATACCCCCGAACATATGATTTACTCCATGCATGGACCGTTTTTTCTGACGTACAAGCGAAAGAGTGCAGTCAAGAAGATCTATTACTTGAGATGGACCGTTTGGTTAGGCCTACCGGTTTCATAATCATCAGGGATAAACAACCTGTGATTGATTTTGTTAAGAAGTATCTAACAGCATTGCATTGGGAAGAAGTAGCAACTGCAGATTCCAGTTCTGACTCTGACCAAGATGGCAATGAAATTATTTTTGTTATCCAGAAGAAATTGTGGCTCACTACTGAAAGCCTTAGGGATGCAGCAGAATAG
Protein sequence

>Msa0828840

MSRGRSDGSQKKRLVASVCGVALFLGFLYVFQGSIFGGQNSGSSTAEYGKSLKRLGASYLGADEDADNKQQDESSSLVQGDTLADDIVPKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLSVMEHYERHCPPAERRYNCLIPPPPGYKVPIKWPQSREEVWKVNIPHTHLAKEKSDQNWMVVKGEKIFFPGGGTHFHYGADKYIAAIANMLNFTDNNLNNEGRLRTVLDVGCGVASFGAYLLASDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVGRMCWRIASKRDQTVIWQKPLTNDCYMEREPGTRPPLCQSDDDPDAVWGVNMETCITPYSDHDNRAQGSELAPWPSRLTSPPPRLADLGISSEVFEKDTELWQKRIENYWNLMGPKISSNTVRNIMDMKANLGSFAAALKDKDVWVMNVVPPYGPSTLRIVFDRGLIGTTHDWCEAFSTYPRTYDLLHAWTVFSDVQAKECSQEDLLLEMDRLVRPTGFIIIRDKQPVIDFVKKYLTALHWEEVATADSSSDSDQDGNEIIFVIQKKLWLTTESLRDAAE*