AlfalfaGEDB | Msa0828840

M. sativa cultivar zhongmu-4 / Msa0828840

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005911 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009506 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0030054 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0097708 GO:0098588 GO:0098791 GO:0098805
PFAM: PF03141.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0828840	XP_013467092.2	98.722	626	8	0	1	626	1	626	0.0	1294

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0828840	sp\|Q940J9\|PMT8_ARATH	75.238	630	142	5	1	624	1	622	0.0	1014

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0828840	A0A396JJY3	98.722	626	8	0	1	626	1	626	0.0	1294

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0109890	Msa0828840	0.991349	3.528496e-187	-8.615850e-47
Msa0156240	Msa0828840	0.813308	2.733330e-51	-8.615850e-47
Msa0249850	Msa0828840	0.810677	1.023350e-50	-8.615850e-47
Msa0400420	Msa0828840	0.817264	3.608553e-52	-8.615850e-47
Msa0519760	Msa0828840	0.809493	1.841163e-50	-8.615850e-47
Msa0519840	Msa0828840	0.808845	2.535601e-50	-8.615850e-47
Msa0716890	Msa0828840	0.833218	6.051793e-56	-8.615850e-47
Msa0828840	Msa0837710	0.821395	4.129986e-53	-8.615850e-47
Msa0828840	Msa1207840	0.808523	2.970188e-50	-8.615850e-47
Msa0828840	Msa1257720	0.812181	4.824284e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0828840	MtrunA17_Chr1g0167381	98.722	626	8	0	1	626	1	626	0.0	1294
Msa0828840	MtrunA17_Chr1g0187601	82.372	624	109	1	1	624	1	623	0.0	1061
Msa0828840	MtrunA17_Chr1g0183721	68.590	624	162	5	1	622	1	592	0.0	923
Msa0828840	MtrunA17_Chr1g0159741	46.004	513	253	10	92	594	141	639	7.19e-162	478
Msa0828840	MtrunA17_Chr3g0112341	44.847	524	270	7	72	588	133	644	1.43e-161	478
Msa0828840	MtrunA17_Chr1g0171781	45.714	525	273	6	94	615	88	603	2.24e-158	468
Msa0828840	MtrunA17_Chr5g0435751	44.269	506	243	7	90	588	123	596	7.50e-157	464
Msa0828840	MtrunA17_Chr8g0388881	45.203	542	264	12	90	615	96	620	4.20e-156	462
Msa0828840	MtrunA17_Chr3g0130381	43.023	602	293	18	41	624	218	787	1.41e-152	459
Msa0828840	MtrunA17_Chr1g0203741	44.790	547	260	14	91	615	91	617	5.04e-152	452

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0828840	AT1G04430.1	75.238	630	142	5	1	624	1	622	0.0	1014
Msa0828840	AT1G04430.3	75.238	630	142	5	1	624	1	622	0.0	1014
Msa0828840	AT1G04430.2	75.238	630	142	5	1	624	1	622	0.0	1014
Msa0828840	AT3G23300.2	74.718	621	144	3	3	623	2	609	0.0	981
Msa0828840	AT3G23300.1	74.718	621	144	3	3	623	2	609	0.0	981
Msa0828840	AT4G14360.1	74.557	621	142	4	3	623	2	606	0.0	957
Msa0828840	AT4G14360.2	74.557	621	142	4	3	623	2	606	0.0	957
Msa0828840	AT5G14430.1	60.165	605	226	3	12	615	14	604	0.0	763
Msa0828840	AT5G14430.2	59.669	605	229	3	12	615	14	604	0.0	757
Msa0828840	AT5G06050.1	43.672	561	291	10	35	587	96	639	3.86e-167	493

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Find 188 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGTTGAAAAGACTTG+GGG	0.671264	5_4:-1795467	Msa0828840:CDS
AAAGAGTGCCACACCACAAA+CGG	0.461307	5_4:+1795564	None:intergenic
AAATAATTTCATTGCCATCT+TGG	0.345100	5_4:+1791719	None:intergenic
AAATCTCATCGAACACTGTG+AGG	0.672324	5_4:-1792335	Msa0828840:CDS
AACCGGTAGGCCTAACCAAA+CGG	0.524646	5_4:+1791848	None:intergenic
AACCTCCCGGCCTAAGAACA+CGG	0.591632	5_4:+1793533	None:intergenic
AAGACTTGGGGCATCGTATT+TGG	0.136099	5_4:-1795455	Msa0828840:CDS
AAGAGAAGTCCGACCAGAAC+TGG	0.375125	5_4:-1794452	Msa0828840:CDS
AAGGAATTAACAGCATCACA+TGG	0.703586	5_4:-1791557	Msa0828840:three_prime_UTR
AATACAATTCTAAGGGTGCT+TGG	0.560490	5_4:+1792219	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAAATGAAGAAGTTACT+GGG	+	chr5_4:1791327-1791346	None:intergenic	30.0%
AAGAGAAATGAAGAAGTTAC+TGG	+	chr5_4:1791328-1791347	None:intergenic	30.0%
ACTATCTTTGTGTTAGATCT+TGG	-	chr5_4:1791552-1791571	Msa0828840:three_prime_UTR	30.0%
TAGAAATCCAAGAACTACTA+GGG	+	chr5_4:1791780-1791799	None:intergenic	30.0%
TCAAGACGACAAAATTGTAA+AGG	-	chr5_4:1792147-1792166	Msa0828840:intron	30.0%
CTTTCAACATATAAATGTCG+AGG	-	chr5_4:1792428-1792447	Msa0828840:intron	30.0%
TTCAACATATAAATGTCGAG+GGG	-	chr5_4:1792430-1792449	Msa0828840:intron	30.0%
GAAAATCGTTGAAAAGACTT+GGG	-	chr5_4:1792587-1792606	Msa0828840:intron	30.0%
AAAATCGTTGAAAAGACTTG+GGG	-	chr5_4:1792588-1792607	Msa0828840:intron	30.0%
TGCTCTCGAATAAATATACT+CGG	+	chr5_4:1792796-1792815	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	1791180	1796897	1791180	ID=Msa0828840;Name=Msa0828840
chr5_4	mRNA	1791180	1796897	1791180	ID=Msa0828840-mRNA-1;Parent=Msa0828840;Name=Msa0828840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=405\|1\|1\|1\|0.75\|0.66\|9\|480\|626
chr5_4	exon	1791180	1791984	1791180	ID=Msa0828840-mRNA-1:exon:485;Parent=Msa0828840-mRNA-1
chr5_4	exon	1792186	1792406	1792186	ID=Msa0828840-mRNA-1:exon:484;Parent=Msa0828840-mRNA-1
chr5_4	exon	1792831	1792943	1792831	ID=Msa0828840-mRNA-1:exon:483;Parent=Msa0828840-mRNA-1
chr5_4	exon	1793269	1793863	1793269	ID=Msa0828840-mRNA-1:exon:482;Parent=Msa0828840-mRNA-1
chr5_4	exon	1794362	1794544	1794362	ID=Msa0828840-mRNA-1:exon:481;Parent=Msa0828840-mRNA-1
chr5_4	exon	1794637	1794801	1794637	ID=Msa0828840-mRNA-1:exon:480;Parent=Msa0828840-mRNA-1
chr5_4	exon	1795357	1795858	1795357	ID=Msa0828840-mRNA-1:exon:479;Parent=Msa0828840-mRNA-1
chr5_4	exon	1796687	1796745	1796687	ID=Msa0828840-mRNA-1:exon:478;Parent=Msa0828840-mRNA-1
chr5_4	exon	1796775	1796897	1796775	ID=Msa0828840-mRNA-1:exon:477;Parent=Msa0828840-mRNA-1
chr5_4	five_prime_UTR	1796775	1796897	1796775	ID=Msa0828840-mRNA-1:five_prime_utr;Parent=Msa0828840-mRNA-1
chr5_4	five_prime_UTR	1796687	1796745	1796687	ID=Msa0828840-mRNA-1:five_prime_utr;Parent=Msa0828840-mRNA-1
chr5_4	five_prime_UTR	1795636	1795858	1795636	ID=Msa0828840-mRNA-1:five_prime_utr;Parent=Msa0828840-mRNA-1
chr5_4	CDS	1795357	1795635	1795357	ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4	CDS	1794637	1794801	1794637	ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4	CDS	1794362	1794544	1794362	ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4	CDS	1793269	1793863	1793269	ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4	CDS	1792831	1792943	1792831	ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4	CDS	1792186	1792406	1792186	ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4	CDS	1791660	1791984	1791660	ID=Msa0828840-mRNA-1:cds;Parent=Msa0828840-mRNA-1
chr5_4	three_prime_UTR	1791180	1791659	1791180	ID=Msa0828840-mRNA-1:three_prime_utr;Parent=Msa0828840-mRNA-1

Gene Sequence

>Msa0828840

ATGTCGAGGGGCAGATCTGATGGATCGCAAAAGAAGCGTTTAGTTGCTTCCGTTTGTGGTGTGGCACTCTTTCTCGGTTTTCTATATGTGTTCCAAGGATCCATCTTTGGTGGTCAAAATAGTGGTTCATCTACAGCTGAATATGGAAAATCGTTGAAAAGACTTGGGGCATCGTATTTGGGTGCAGATGAAGATGCAGATAACAAGCAACAAGATGAATCTTCGAGTTTAGTGCAGGGAGATACGTTGGCTGATGATATTGTGCCGAAGAGTTTCCCTGTTTGTGATGACCGTCACTCAGAGTTGATTCCGTGTTTAGACAGACATCTTATCTATCAAATGAGACTGAAGCTGGATCTTTCTGTGATGGAACACTACGAGAGACATTGCCCTCCTGCAGAAAGGCGGTACAATTGCTTGATTCCTCCTCCCCCAGGATACAAGGTTCCTATTAAGTGGCCACAGAGCAGGGAGGAGGTATGGAAAGTAAATATACCACATACTCACCTTGCAAAAGAGAAGTCCGACCAGAACTGGATGGTTGTGAAAGGTGAAAAGATATTTTTCCCTGGAGGAGGGACTCATTTTCACTACGGAGCTGATAAGTACATTGCAGCAATCGCAAATATGCTCAACTTTACCGACAATAATCTTAACAACGAAGGAAGGCTGCGAACTGTTCTTGATGTTGGCTGTGGTGTTGCAAGTTTTGGGGCTTATCTTCTGGCATCTGATATCATTGCAATGTCCTTGGCACCCAATGACGTGCATCAAAATCAAATTCAATTTGCTTTAGAAAGAGGAATTCCTGCATATCTTGGTGTCTTGGGAACCAAGAGACTCCCTTACCCAAGTAGATCTTTTGAACTTGCACATTGTTCTCGTTGCCGAATTGACTGGCTTCAAAGAGATGGAATACTACTCCTTGAGCTTGACCGTGTTCTTAGGCCGGGAGGTTATTTTGCTTACTCGTCTCCAGAAGCATATGCTCAGGACGAAGAGGATTTGAGGATATGGAGAGAAATGAGTGCTCTTGTCGGACGCATGTGTTGGAGAATTGCTTCAAAGAGAGACCAAACTGTCATCTGGCAGAAACCTCTCACGAATGATTGCTATATGGAAAGAGAACCTGGTACTCGTCCTCCTCTTTGCCAGTCTGATGACGACCCAGATGCAGTTTGGGGAGTGAATATGGAAACTTGCATAACACCTTACTCTGACCATGACAACAGAGCACAGGGTAGTGAATTAGCTCCATGGCCTTCGAGGTTGACCAGTCCTCCTCCTAGATTAGCTGACCTCGGCATTTCAAGTGAAGTCTTCGAAAAGGACACGGAACTTTGGCAAAAAAGAATTGAGAATTACTGGAATCTCATGGGTCCAAAAATCTCATCGAACACTGTGAGGAACATAATGGATATGAAAGCAAACTTGGGTTCATTTGCAGCTGCTCTTAAAGACAAAGATGTTTGGGTGATGAATGTTGTTCCACCTTATGGACCAAGCACCCTTAGAATTGTATTCGACAGAGGACTCATAGGGACTACTCATGACTGGTGTGAAGCATTTTCAACATACCCCCGAACATATGATTTACTCCATGCATGGACCGTTTTTTCTGACGTACAAGCGAAAGAGTGCAGTCAAGAAGATCTATTACTTGAGATGGACCGTTTGGTTAGGCCTACCGGTTTCATAATCATCAGGGATAAACAACCTGTGATTGATTTTGTTAAGAAGTATCTAACAGCATTGCATTGGGAAGAAGTAGCAACTGCAGATTCCAGTTCTGACTCTGACCAAGATGGCAATGAAATTATTTTTGTTATCCAGAAGAAATTGTGGCTCACTACTGAAAGCCTTAGGGATGCAGCAGAATAG

Protein sequence

>Msa0828840

MSRGRSDGSQKKRLVASVCGVALFLGFLYVFQGSIFGGQNSGSSTAEYGKSLKRLGASYLGADEDADNKQQDESSSLVQGDTLADDIVPKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLSVMEHYERHCPPAERRYNCLIPPPPGYKVPIKWPQSREEVWKVNIPHTHLAKEKSDQNWMVVKGEKIFFPGGGTHFHYGADKYIAAIANMLNFTDNNLNNEGRLRTVLDVGCGVASFGAYLLASDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMSALVGRMCWRIASKRDQTVIWQKPLTNDCYMEREPGTRPPLCQSDDDPDAVWGVNMETCITPYSDHDNRAQGSELAPWPSRLTSPPPRLADLGISSEVFEKDTELWQKRIENYWNLMGPKISSNTVRNIMDMKANLGSFAAALKDKDVWVMNVVPPYGPSTLRIVFDRGLIGTTHDWCEAFSTYPRTYDLLHAWTVFSDVQAKECSQEDLLLEMDRLVRPTGFIIIRDKQPVIDFVKKYLTALHWEEVATADSSSDSDQDGNEIIFVIQKKLWLTTESLRDAAE*