Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047280 | Msa0161410 | 0.801040 | 1.086041e-48 | -8.615850e-47 |
| Msa0053700 | Msa0161410 | 0.800057 | 1.722638e-48 | -8.615850e-47 |
| Msa0161410 | Msa0164370 | 0.816500 | 5.355128e-52 | -8.615850e-47 |
| Msa0161410 | Msa0337510 | 0.843659 | 1.222807e-58 | -8.615850e-47 |
| Msa0161410 | Msa0431770 | 0.814969 | 1.175406e-51 | -8.615850e-47 |
| Msa0161410 | Msa0704800 | 0.800191 | 1.617875e-48 | -8.615850e-47 |
| Msa0161410 | Msa1253810 | 0.828024 | 1.131406e-54 | -8.615850e-47 |
| Msa0161410 | Msa1279590 | 0.801365 | 9.318299e-49 | -8.615850e-47 |
| Msa0161410 | Msa1289300 | 0.813755 | 2.179998e-51 | -8.615850e-47 |
| Msa0161410 | Msa1297600 | 0.816788 | 4.617470e-52 | -8.615850e-47 |
| Msa0161410 | Msa1323990 | 0.827424 | 1.576506e-54 | -8.615850e-47 |
| Msa0161410 | Msa1325930 | 0.800724 | 1.259933e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCACTTTCTCAACGTTT+TGG | 0.264629 | 1_4:-36700215 | None:intergenic |
| TTGCACCTACAATTTCATTA+TGG | 0.305271 | 1_4:+36700725 | Msa0161410:three_prime_UTR |
| TGAACAACTCGGTGGAAAAC+TGG | 0.312041 | 1_4:-36699127 | None:intergenic |
| CCAGTTCTTGTTCTTGAAAT+CGG | 0.327650 | 1_4:+36699217 | Msa0161410:five_prime_UTR |
| AGATGAAAGGGAGTAATGTT+AGG | 0.329082 | 1_4:-36698936 | None:intergenic |
| TGTATTGAGATTTAGTGTTC+TGG | 0.369192 | 1_4:+36700549 | Msa0161410:exon |
| AAAGCTGGAACTTAACTAAT+GGG | 0.369541 | 1_4:-36699084 | None:intergenic |
| AAAAGCTGGAACTTAACTAA+TGG | 0.370349 | 1_4:-36699085 | None:intergenic |
| ACTCGGTGGAAAACTGGAAT+AGG | 0.380916 | 1_4:-36699121 | None:intergenic |
| TTAGTGTTCTGGTGCAAATC+AGG | 0.390681 | 1_4:+36700560 | Msa0161410:three_prime_UTR |
| TTCATCACATTGGCAATCAT+TGG | 0.396788 | 1_4:-36701508 | None:intergenic |
| GGGTTCAATTTCGTTGATGA+TGG | 0.408242 | 1_4:-36699063 | None:intergenic |
| TCCATTTGCACCTACACTCC+TGG | 0.409884 | 1_4:+36700700 | Msa0161410:three_prime_UTR |
| GAAATGAAACATTGTTCTAA+AGG | 0.420124 | 1_4:+36700764 | Msa0161410:three_prime_UTR |
| CCGATTTCAAGAACAAGAAC+TGG | 0.428510 | 1_4:-36699217 | None:intergenic |
| ACCAGGAGTGTAGGTGCAAA+TGG | 0.432206 | 1_4:-36700701 | None:intergenic |
| GTTACTGCTCTCATCTCATA+AGG | 0.438972 | 1_4:+36699248 | Msa0161410:five_prime_UTR |
| TGAGATGGTTTCCTATGATA+TGG | 0.444261 | 1_4:+36700526 | Msa0161410:CDS |
| GGCCAACACGATGGAAAAGC+TGG | 0.450992 | 1_4:-36699099 | None:intergenic |
| TCAAGAACAAGAACTGGAAC+AGG | 0.456885 | 1_4:-36699211 | None:intergenic |
| ATCTCAATACACCATATCAT+AGG | 0.456995 | 1_4:-36700537 | None:intergenic |
| TTATGGCAAGTGACAAGATC+AGG | 0.462078 | 1_4:+36700742 | Msa0161410:three_prime_UTR |
| GATTATCGCGTTTGTGTACC+AGG | 0.464521 | 1_4:+36699166 | Msa0161410:five_prime_UTR |
| GAAGGAAAATTTATTGAAGA+GGG | 0.465822 | 1_4:-36698891 | None:intergenic |
| CATTTCCCTCATCAACATAT+CGG | 0.470848 | 1_4:+36700077 | Msa0161410:five_prime_UTR |
| CTCGGTGGAAAACTGGAATA+GGG | 0.473400 | 1_4:-36699120 | None:intergenic |
| GATGAAAGGGAGTAATGTTA+GGG | 0.479199 | 1_4:-36698935 | None:intergenic |
| CTCATCAACATATCGGCATC+AGG | 0.481451 | 1_4:+36700084 | Msa0161410:five_prime_UTR |
| GCAGTTATCAACATCTTCGT+TGG | 0.491361 | 1_4:+36700040 | Msa0161410:intron |
| ACTTGCCATAATGAAATTGT+AGG | 0.501483 | 1_4:-36700730 | None:intergenic |
| CAGGCATAAGCAAGTGATGT+AGG | 0.512448 | 1_4:+36701482 | Msa0161410:intron |
| GGTTCAATTTCGTTGATGAT+GGG | 0.512730 | 1_4:-36699062 | None:intergenic |
| TGAAGGAAAATTTATTGAAG+AGG | 0.514497 | 1_4:-36698892 | None:intergenic |
| GATTAGAGTTACTCATGAGA+TGG | 0.548532 | 1_4:+36700511 | Msa0161410:CDS |
| TTTGATGAAAACATAATAAG+GGG | 0.552611 | 1_4:-36698850 | None:intergenic |
| TTCTTGAGGCTTCATCACAT+TGG | 0.566647 | 1_4:-36701518 | None:intergenic |
| TTGATGAAAACATAATAAGG+GGG | 0.571093 | 1_4:-36698849 | None:intergenic |
| TGATGAAAACATAATAAGGG+GGG | 0.592986 | 1_4:-36698848 | None:intergenic |
| AGGTGCAAAACCAGGAGTGT+AGG | 0.604566 | 1_4:-36700710 | None:intergenic |
| ACAAAGGCGATGAGAAAACC+TGG | 0.615146 | 1_4:-36699184 | None:intergenic |
| GAAATTGTAGGTGCAAAACC+AGG | 0.627610 | 1_4:-36700718 | None:intergenic |
| CTGGAATAGGGCCAACACGA+TGG | 0.628220 | 1_4:-36699108 | None:intergenic |
| AACTGGAACAGGAACAACAA+AGG | 0.628523 | 1_4:-36699200 | None:intergenic |
| AAGCTGGAACTTAACTAATG+GGG | 0.644809 | 1_4:-36699083 | None:intergenic |
| CTGATGCCGATATGTTGATG+AGG | 0.659856 | 1_4:-36700083 | None:intergenic |
| GTATTCAGGAGATATTCTTG+AGG | 0.672009 | 1_4:-36701532 | None:intergenic |
| ATATCGGCATCAGGTCAACA+TGG | 0.674647 | 1_4:+36700093 | Msa0161410:exon |
| TGATGCCGATATGTTGATGA+GGG | 0.679239 | 1_4:-36700082 | None:intergenic |
| CTGAAACATGAACAACTCGG+TGG | 0.704215 | 1_4:-36699135 | None:intergenic |
| AATCTGAAACATGAACAACT+CGG | 0.761189 | 1_4:-36699138 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAGATTGATTTTATATTT+GGG | + | chr1_4:36700003-36700022 | Msa0161410:intron | 10.0% |
| !!! | TTTTGATGAAAACATAATAA+GGG | - | chr1_4:36698854-36698873 | None:intergenic | 15.0% |
| !!! | ATTTTGATGAAAACATAATA+AGG | - | chr1_4:36698855-36698874 | None:intergenic | 15.0% |
| !!! | ATTTTGATTTCAATGAAAAT+TGG | - | chr1_4:36699022-36699041 | None:intergenic | 15.0% |
| !! | TTACTGGATTTATTATATTT+AGG | + | chr1_4:36699354-36699373 | Msa0161410:intron | 15.0% |
| !!! | AAGTTTTGATTTGATTTATT+TGG | + | chr1_4:36699726-36699745 | Msa0161410:intron | 15.0% |
| !!! | CTATAGATTGATTTTATATT+TGG | + | chr1_4:36700002-36700021 | Msa0161410:intron | 15.0% |
| !!! | AATCAATGTTTTTTTTTAAG+AGG | + | chr1_4:36701605-36701624 | Msa0161410:three_prime_UTR | 15.0% |
| !! | TTTGATGAAAACATAATAAG+GGG | - | chr1_4:36698853-36698872 | None:intergenic | 20.0% |
| !!! | AATTTTTGATGAAAAGATGA+AGG | - | chr1_4:36698912-36698931 | None:intergenic | 20.0% |
| !!! | AATTTTTGTTGTTGTGTTTA+GGG | - | chr1_4:36698998-36699017 | None:intergenic | 20.0% |
| !!! | AAATTTTTGTTGTTGTGTTT+AGG | - | chr1_4:36698999-36699018 | None:intergenic | 20.0% |
| !! | AATGAAACAAACAAGAAAAT+AGG | - | chr1_4:36699886-36699905 | None:intergenic | 20.0% |
| !! | TTACATATAAACAAAACACA+CGG | - | chr1_4:36699910-36699929 | None:intergenic | 20.0% |
| !! | AAGTGAGAATAATAAAGAAA+AGG | - | chr1_4:36700152-36700171 | None:intergenic | 20.0% |
| !!! | TTCTTTATTATTCTCACTTT+TGG | + | chr1_4:36700153-36700172 | Msa0161410:intron | 20.0% |
| !! | AAATATGCATAAAAAATTGC+AGG | - | chr1_4:36700593-36700612 | None:intergenic | 20.0% |
| !!! | TAGTTCCTTTATCTTTTAAT+AGG | + | chr1_4:36700833-36700852 | Msa0161410:intron | 20.0% |
| !! | AGTTTGCATTAAAAATAACT+AGG | - | chr1_4:36700859-36700878 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTTACTATTCTAC+AGG | + | chr1_4:36701463-36701482 | Msa0161410:intron | 20.0% |
| ! | TTGATGAAAACATAATAAGG+GGG | - | chr1_4:36698852-36698871 | None:intergenic | 25.0% |
| ! | GAAGGAAAATTTATTGAAGA+GGG | - | chr1_4:36698894-36698913 | None:intergenic | 25.0% |
| ! | TGAAGGAAAATTTATTGAAG+AGG | - | chr1_4:36698895-36698914 | None:intergenic | 25.0% |
| ! | AAAAAGGGAAAAAGATGAAA+GGG | - | chr1_4:36698951-36698970 | None:intergenic | 25.0% |
| !!! | TTTTGAGTTCAAGTGAAAAA+GGG | - | chr1_4:36698966-36698985 | None:intergenic | 25.0% |
| !!! | TCTCATCAGAATTATTTTAC+TGG | + | chr1_4:36699338-36699357 | Msa0161410:intron | 25.0% |
| ! | ATATTTAGGAGATAGAATGA+AGG | + | chr1_4:36699368-36699387 | Msa0161410:intron | 25.0% |
| ! | TGGTTAATCTCATATACTTA+CGG | - | chr1_4:36699458-36699477 | None:intergenic | 25.0% |
| !! | CTTAAGAAGTGTAATTATGA+AGG | + | chr1_4:36699523-36699542 | Msa0161410:intron | 25.0% |
| ! | TTGTAATTTAGTCAAACCAT+TGG | + | chr1_4:36699671-36699690 | Msa0161410:intron | 25.0% |
| !! | GATTTTCAATTCTGTTTTAC+AGG | + | chr1_4:36700325-36700344 | Msa0161410:intron | 25.0% |
| !! | TTACTTGTTTGCTTCATTTT+AGG | + | chr1_4:36700460-36700479 | Msa0161410:intron | 25.0% |
| !! | TACTTGTTTGCTTCATTTTA+GGG | + | chr1_4:36700461-36700480 | Msa0161410:intron | 25.0% |
| !!! | GCATATTTTTTTTGTGCATA+TGG | + | chr1_4:36700605-36700624 | Msa0161410:intron | 25.0% |
| ! | TATGGTATACTTATTTGAGT+AGG | + | chr1_4:36700623-36700642 | Msa0161410:intron | 25.0% |
| ! | GAAATGAAACATTGTTCTAA+AGG | + | chr1_4:36700764-36700783 | Msa0161410:three_prime_UTR | 25.0% |
| !! | TTATCTGAAATAGAATCCAT+AGG | + | chr1_4:36701008-36701027 | Msa0161410:intron | 25.0% |
| ! | ATAGACATTCTTAATTCCTA+TGG | - | chr1_4:36701027-36701046 | None:intergenic | 25.0% |
| ! | AGGAATTAAGAATGTCTATT+TGG | + | chr1_4:36701028-36701047 | Msa0161410:intron | 25.0% |
| ! | AGAGATATAATAAACATCCA+TGG | + | chr1_4:36701136-36701155 | Msa0161410:intron | 25.0% |
| !!! | TTGATGATTTTGACATTGAA+TGG | + | chr1_4:36701419-36701438 | Msa0161410:intron | 25.0% |
| !! | CAATGACTTTTATTGTATTC+AGG | - | chr1_4:36701549-36701568 | None:intergenic | 25.0% |
| TGATGAAAACATAATAAGGG+GGG | - | chr1_4:36698851-36698870 | None:intergenic | 30.0% | |
| ! | TTATTGAAGAGGGAAGTTTT+TGG | - | chr1_4:36698884-36698903 | None:intergenic | 30.0% |
| GAAAAAGGGAAAAAGATGAA+AGG | - | chr1_4:36698952-36698971 | None:intergenic | 30.0% | |
| !!! | GTTTTGAGTTCAAGTGAAAA+AGG | - | chr1_4:36698967-36698986 | None:intergenic | 30.0% |
| AAAGCTGGAACTTAACTAAT+GGG | - | chr1_4:36699087-36699106 | None:intergenic | 30.0% | |
| AAAAGCTGGAACTTAACTAA+TGG | - | chr1_4:36699088-36699107 | None:intergenic | 30.0% | |
| ! | AATCTGAAACATGAACAACT+CGG | - | chr1_4:36699141-36699160 | None:intergenic | 30.0% |
| TGAACAAACATGATGAAAAG+AGG | - | chr1_4:36699280-36699299 | None:intergenic | 30.0% | |
| ATGTTCGTTCAATCACAAAT+GGG | + | chr1_4:36699299-36699318 | Msa0161410:intron | 30.0% | |
| AAAATAATTCTGATGAGACG+AGG | - | chr1_4:36699336-36699355 | None:intergenic | 30.0% | |
| GAGATTAACCAACAAGAATT+TGG | + | chr1_4:36699467-36699486 | Msa0161410:intron | 30.0% | |
| ! | ACTTCTTAAGCATCTTTTCA+AGG | - | chr1_4:36699513-36699532 | None:intergenic | 30.0% |
| ATTGTGATGATTATCGATGT+CGG | + | chr1_4:36699558-36699577 | Msa0161410:intron | 30.0% | |
| !! | GAGTTTGTTACTGTAAATAG+CGG | + | chr1_4:36700377-36700396 | Msa0161410:intron | 30.0% |
| ATCTCAATACACCATATCAT+AGG | - | chr1_4:36700540-36700559 | None:intergenic | 30.0% | |
| TGTATTGAGATTTAGTGTTC+TGG | + | chr1_4:36700549-36700568 | Msa0161410:exon | 30.0% | |
| TTGCACCTACAATTTCATTA+TGG | + | chr1_4:36700725-36700744 | Msa0161410:three_prime_UTR | 30.0% | |
| ACTTGCCATAATGAAATTGT+AGG | - | chr1_4:36700733-36700752 | None:intergenic | 30.0% | |
| CTAGGCCTATTAAAAGATAA+AGG | - | chr1_4:36700841-36700860 | None:intergenic | 30.0% | |
| !! | TATTTGGAAGAAAGTGTTGA+AGG | + | chr1_4:36701044-36701063 | Msa0161410:intron | 30.0% |
| ! | TTAGCTTAAGCTTTTAACCA+TGG | - | chr1_4:36701156-36701175 | None:intergenic | 30.0% |
| TTTGTCAAATGTGATGTAGA+AGG | + | chr1_4:36701343-36701362 | Msa0161410:intron | 30.0% | |
| GATGAAAGGGAGTAATGTTA+GGG | - | chr1_4:36698938-36698957 | None:intergenic | 35.0% | |
| AGATGAAAGGGAGTAATGTT+AGG | - | chr1_4:36698939-36698958 | None:intergenic | 35.0% | |
| !! | GGTTCAATTTCGTTGATGAT+GGG | - | chr1_4:36699065-36699084 | None:intergenic | 35.0% |
| AAGCTGGAACTTAACTAATG+GGG | - | chr1_4:36699086-36699105 | None:intergenic | 35.0% | |
| CCAGTTCTTGTTCTTGAAAT+CGG | + | chr1_4:36699217-36699236 | Msa0161410:five_prime_UTR | 35.0% | |
| CATGTTCGTTCAATCACAAA+TGG | + | chr1_4:36699298-36699317 | Msa0161410:intron | 35.0% | |
| ! | TGAAGGTGATTCTTGTGTTT+TGG | + | chr1_4:36699385-36699404 | Msa0161410:intron | 35.0% |
| ! | GAAGGTGATTCTTGTGTTTT+GGG | + | chr1_4:36699386-36699405 | Msa0161410:intron | 35.0% |
| AACGCTAATGTTATCATTGC+TGG | + | chr1_4:36699603-36699622 | Msa0161410:intron | 35.0% | |
| AATGTTATCATTGCTGGTGT+CGG | + | chr1_4:36699609-36699628 | Msa0161410:intron | 35.0% | |
| ACAAGCAGCAAATTCAATCA+AGG | - | chr1_4:36699839-36699858 | None:intergenic | 35.0% | |
| CATTTCCCTCATCAACATAT+CGG | + | chr1_4:36700077-36700096 | Msa0161410:five_prime_UTR | 35.0% | |
| AGGAATGTGAAAGACAAAAG+TGG | - | chr1_4:36700132-36700151 | None:intergenic | 35.0% | |
| ! | GTTCACTTTCTCAACGTTTT+GGG | - | chr1_4:36700217-36700236 | None:intergenic | 35.0% |
| ! | AGTTCACTTTCTCAACGTTT+TGG | - | chr1_4:36700218-36700237 | None:intergenic | 35.0% |
| AAAACGTTGAGAAAGTGAAC+TGG | + | chr1_4:36700217-36700236 | Msa0161410:intron | 35.0% | |
| AAACGTTGAGAAAGTGAACT+GGG | + | chr1_4:36700218-36700237 | Msa0161410:intron | 35.0% | |
| GATTAGAGTTACTCATGAGA+TGG | + | chr1_4:36700511-36700530 | Msa0161410:CDS | 35.0% | |
| TGAGATGGTTTCCTATGATA+TGG | + | chr1_4:36700526-36700545 | Msa0161410:CDS | 35.0% | |
| ! | GACTGACTTAATGGTACTAA+TGG | - | chr1_4:36700965-36700984 | None:intergenic | 35.0% |
| TAGTACCATTAAGTCAGTCT+TGG | + | chr1_4:36700966-36700985 | Msa0161410:intron | 35.0% | |
| !! | AAGAAAGTGTTGAAGGAAAG+TGG | + | chr1_4:36701051-36701070 | Msa0161410:intron | 35.0% |
| ! | AATTTTCCCCATCAACAGTA+TGG | - | chr1_4:36701282-36701301 | None:intergenic | 35.0% |
| TTCATCACATTGGCAATCAT+TGG | - | chr1_4:36701511-36701530 | None:intergenic | 35.0% | |
| GTATTCAGGAGATATTCTTG+AGG | - | chr1_4:36701535-36701554 | None:intergenic | 35.0% | |
| ! | GGGTTCAATTTCGTTGATGA+TGG | - | chr1_4:36699066-36699085 | None:intergenic | 40.0% |
| AACTGGAACAGGAACAACAA+AGG | - | chr1_4:36699203-36699222 | None:intergenic | 40.0% | |
| TCAAGAACAAGAACTGGAAC+AGG | - | chr1_4:36699214-36699233 | None:intergenic | 40.0% | |
| CCGATTTCAAGAACAAGAAC+TGG | - | chr1_4:36699220-36699239 | None:intergenic | 40.0% | |
| GTTACTGCTCTCATCTCATA+AGG | + | chr1_4:36699248-36699267 | Msa0161410:five_prime_UTR | 40.0% | |
| !!! | GTGATTCTTGTGTTTTGGGA+GGG | + | chr1_4:36699390-36699409 | Msa0161410:intron | 40.0% |
| ! | TGGGAGGGTATGAGTAAAAA+TGG | + | chr1_4:36699405-36699424 | Msa0161410:intron | 40.0% |
| ! | GGGAGGGTATGAGTAAAAAT+GGG | + | chr1_4:36699406-36699425 | Msa0161410:intron | 40.0% |
| GTTGGATGCCAAATTCTTGT+TGG | - | chr1_4:36699478-36699497 | None:intergenic | 40.0% | |
| CAAGAATTTGGCATCCAACA+TGG | + | chr1_4:36699479-36699498 | Msa0161410:intron | 40.0% | |
| TCAAGGATCTTAAGCCATGT+TGG | - | chr1_4:36699496-36699515 | None:intergenic | 40.0% | |
| TATTGCTCTGGTTGTACTCT+CGG | + | chr1_4:36699641-36699660 | Msa0161410:intron | 40.0% | |
| AGAGATGAACTTGGATCCAA+TGG | - | chr1_4:36699690-36699709 | None:intergenic | 40.0% | |
| CATGCAACAAGAGATGAACT+TGG | - | chr1_4:36699699-36699718 | None:intergenic | 40.0% | |
| GCAGTTATCAACATCTTCGT+TGG | + | chr1_4:36700040-36700059 | Msa0161410:intron | 40.0% | |
| ! | TGATGCCGATATGTTGATGA+GGG | - | chr1_4:36700085-36700104 | None:intergenic | 40.0% |
| AGAAAGTGAACTGGGAAACT+TGG | + | chr1_4:36700226-36700245 | Msa0161410:intron | 40.0% | |
| !!! | GCTTCATTTTAGGGTTCTCT+TGG | + | chr1_4:36700470-36700489 | Msa0161410:intron | 40.0% |
| TTAGTGTTCTGGTGCAAATC+AGG | + | chr1_4:36700560-36700579 | Msa0161410:three_prime_UTR | 40.0% | |
| TGAGTAGGAATGTTGTGTGT+AGG | + | chr1_4:36700638-36700657 | Msa0161410:intron | 40.0% | |
| GAGTAGGAATGTTGTGTGTA+GGG | + | chr1_4:36700639-36700658 | Msa0161410:intron | 40.0% | |
| GAAATTGTAGGTGCAAAACC+AGG | - | chr1_4:36700721-36700740 | None:intergenic | 40.0% | |
| TTATGGCAAGTGACAAGATC+AGG | + | chr1_4:36700742-36700761 | Msa0161410:three_prime_UTR | 40.0% | |
| ! | TGTGACCAAGACTGACTTAA+TGG | - | chr1_4:36700974-36700993 | None:intergenic | 40.0% |
| CAGTCTTGGTCACATTCTAT+TGG | + | chr1_4:36700980-36700999 | Msa0161410:intron | 40.0% | |
| CAGTATGGTTAGGCTATGTT+TGG | - | chr1_4:36701267-36701286 | None:intergenic | 40.0% | |
| TAGCCTAACCATACTGTTGA+TGG | + | chr1_4:36701271-36701290 | Msa0161410:intron | 40.0% | |
| AGCCTAACCATACTGTTGAT+GGG | + | chr1_4:36701272-36701291 | Msa0161410:intron | 40.0% | |
| GAAAAGAGACAAACACTAGC+TGG | - | chr1_4:36701321-36701340 | None:intergenic | 40.0% | |
| TTCTTGAGGCTTCATCACAT+TGG | - | chr1_4:36701521-36701540 | None:intergenic | 40.0% | |
| ! | TTCCAGCTTTTCCATCGTGT+TGG | + | chr1_4:36699097-36699116 | Msa0161410:five_prime_UTR | 45.0% |
| CTCGGTGGAAAACTGGAATA+GGG | - | chr1_4:36699123-36699142 | None:intergenic | 45.0% | |
| ! | ACTCGGTGGAAAACTGGAAT+AGG | - | chr1_4:36699124-36699143 | None:intergenic | 45.0% |
| ! | TGAACAACTCGGTGGAAAAC+TGG | - | chr1_4:36699130-36699149 | None:intergenic | 45.0% |
| CTGAAACATGAACAACTCGG+TGG | - | chr1_4:36699138-36699157 | None:intergenic | 45.0% | |
| GATTATCGCGTTTGTGTACC+AGG | + | chr1_4:36699166-36699185 | Msa0161410:five_prime_UTR | 45.0% | |
| ACAAAGGCGATGAGAAAACC+TGG | - | chr1_4:36699187-36699206 | None:intergenic | 45.0% | |
| !! | GGTGATTCTTGTGTTTTGGG+AGG | + | chr1_4:36699389-36699408 | Msa0161410:intron | 45.0% |
| ATTGCTCTGGTTGTACTCTC+GGG | + | chr1_4:36699642-36699661 | Msa0161410:intron | 45.0% | |
| CTGATGCCGATATGTTGATG+AGG | - | chr1_4:36700086-36700105 | None:intergenic | 45.0% | |
| CTCATCAACATATCGGCATC+AGG | + | chr1_4:36700084-36700103 | Msa0161410:five_prime_UTR | 45.0% | |
| ATATCGGCATCAGGTCAACA+TGG | + | chr1_4:36700093-36700112 | Msa0161410:exon | 45.0% | |
| GTGAACTGGGAAACTTGGAT+AGG | + | chr1_4:36700231-36700250 | Msa0161410:intron | 45.0% | |
| GCCTAACCATACTGTTGATG+GGG | + | chr1_4:36701273-36701292 | Msa0161410:intron | 45.0% | |
| TCCCCATCAACAGTATGGTT+AGG | - | chr1_4:36701277-36701296 | None:intergenic | 45.0% | |
| CAGGCATAAGCAAGTGATGT+AGG | + | chr1_4:36701482-36701501 | Msa0161410:intron | 45.0% | |
| CGATGTCGGCGAAGTTAGTT+CGG | + | chr1_4:36699572-36699591 | Msa0161410:intron | 50.0% | |
| TCCATTTGCACCTACACTCC+TGG | + | chr1_4:36700700-36700719 | Msa0161410:three_prime_UTR | 50.0% | |
| ! | ACCAGGAGTGTAGGTGCAAA+TGG | - | chr1_4:36700704-36700723 | None:intergenic | 50.0% |
| ! | AGGTGCAAAACCAGGAGTGT+AGG | - | chr1_4:36700713-36700732 | None:intergenic | 50.0% |
| TATCCCTCAGAAGACGTAGC+AGG | + | chr1_4:36701204-36701223 | Msa0161410:intron | 50.0% | |
| ACGTAGCAGGCTCTTGTGTA+GGG | + | chr1_4:36701217-36701236 | Msa0161410:intron | 50.0% | |
| GGCCAACACGATGGAAAAGC+TGG | - | chr1_4:36699102-36699121 | None:intergenic | 55.0% | |
| CTGGAATAGGGCCAACACGA+TGG | - | chr1_4:36699111-36699130 | None:intergenic | 55.0% | |
| !! | ATTGCTGGTGTCGGTGTTGC+TGG | + | chr1_4:36699618-36699637 | Msa0161410:intron | 55.0% |
| !! | CGGTGTTGCTGGTATTGCTC+TGG | + | chr1_4:36699629-36699648 | Msa0161410:intron | 55.0% |
| CTCTGGTTGTACTCTCGGGA+AGG | + | chr1_4:36699646-36699665 | Msa0161410:intron | 55.0% | |
| GAGCCTGCTACGTCTTCTGA+GGG | - | chr1_4:36701210-36701229 | None:intergenic | 55.0% | |
| AGAGCCTGCTACGTCTTCTG+AGG | - | chr1_4:36701211-36701230 | None:intergenic | 55.0% | |
| GACGTAGCAGGCTCTTGTGT+AGG | + | chr1_4:36701216-36701235 | Msa0161410:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 36698829 | 36701719 | 36698829 | ID=Msa0161410;Name=Msa0161410 |
| chr1_4 | mRNA | 36698829 | 36701719 | 36698829 | ID=Msa0161410-mRNA-1;Parent=Msa0161410;Name=Msa0161410-mRNA-1;_AED=0.18;_eAED=0.18;_QI=509|0.8|0.83|1|0|0|6|386|40 |
| chr1_4 | exon | 36698829 | 36699269 | 36698829 | ID=Msa0161410-mRNA-1:exon:10837;Parent=Msa0161410-mRNA-1 |
| chr1_4 | exon | 36700044 | 36700114 | 36700044 | ID=Msa0161410-mRNA-1:exon:10838;Parent=Msa0161410-mRNA-1 |
| chr1_4 | exon | 36700186 | 36700230 | 36700186 | ID=Msa0161410-mRNA-1:exon:10839;Parent=Msa0161410-mRNA-1 |
| chr1_4 | exon | 36700482 | 36700581 | 36700482 | ID=Msa0161410-mRNA-1:exon:10840;Parent=Msa0161410-mRNA-1 |
| chr1_4 | exon | 36700660 | 36700785 | 36700660 | ID=Msa0161410-mRNA-1:exon:10841;Parent=Msa0161410-mRNA-1 |
| chr1_4 | exon | 36701485 | 36701719 | 36701485 | ID=Msa0161410-mRNA-1:exon:10842;Parent=Msa0161410-mRNA-1 |
| chr1_4 | five_prime_UTR | 36698829 | 36699269 | 36698829 | ID=Msa0161410-mRNA-1:five_prime_utr;Parent=Msa0161410-mRNA-1 |
| chr1_4 | five_prime_UTR | 36700044 | 36700111 | 36700044 | ID=Msa0161410-mRNA-1:five_prime_utr;Parent=Msa0161410-mRNA-1 |
| chr1_4 | CDS | 36700112 | 36700114 | 36700112 | ID=Msa0161410-mRNA-1:cds;Parent=Msa0161410-mRNA-1 |
| chr1_4 | CDS | 36700186 | 36700230 | 36700186 | ID=Msa0161410-mRNA-1:cds;Parent=Msa0161410-mRNA-1 |
| chr1_4 | CDS | 36700482 | 36700556 | 36700482 | ID=Msa0161410-mRNA-1:cds;Parent=Msa0161410-mRNA-1 |
| chr1_4 | three_prime_UTR | 36700557 | 36700581 | 36700557 | ID=Msa0161410-mRNA-1:three_prime_utr;Parent=Msa0161410-mRNA-1 |
| chr1_4 | three_prime_UTR | 36700660 | 36700785 | 36700660 | ID=Msa0161410-mRNA-1:three_prime_utr;Parent=Msa0161410-mRNA-1 |
| chr1_4 | three_prime_UTR | 36701485 | 36701719 | 36701485 | ID=Msa0161410-mRNA-1:three_prime_utr;Parent=Msa0161410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
