Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164370 | RHN76102.1 | 63.448 | 145 | 48 | 2 | 59 | 199 | 258 | 401 | 1.01e-41 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164370 | sp|Q9XE58|SCL14_ARATH | 38.571 | 140 | 82 | 2 | 58 | 193 | 352 | 491 | 4.72e-20 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164370 | A0A396JFP7 | 63.448 | 145 | 48 | 2 | 59 | 199 | 258 | 401 | 4.82e-42 | 165 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0164370 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036370 | Msa0164370 | 0.804156 | 2.473406e-49 | -8.615850e-47 |
| Msa0038870 | Msa0164370 | 0.800157 | 1.644166e-48 | -8.615850e-47 |
| Msa0047280 | Msa0164370 | 0.820530 | 6.532114e-53 | -8.615850e-47 |
| Msa0049390 | Msa0164370 | 0.820925 | 5.302117e-53 | -8.615850e-47 |
| Msa0052630 | Msa0164370 | 0.801129 | 1.041673e-48 | -8.615850e-47 |
| Msa0053690 | Msa0164370 | 0.890922 | 6.351631e-74 | -8.615850e-47 |
| Msa0053700 | Msa0164370 | 0.896493 | 3.500491e-76 | -8.615850e-47 |
| Msa0055100 | Msa0164370 | 0.806377 | 8.474223e-50 | -8.615850e-47 |
| Msa0065010 | Msa0164370 | 0.822016 | 2.967295e-53 | -8.615850e-47 |
| Msa0068020 | Msa0164370 | 0.804709 | 1.896398e-49 | -8.615850e-47 |
| Msa0070170 | Msa0164370 | 0.817870 | 2.635275e-52 | -8.615850e-47 |
| Msa0070430 | Msa0164370 | 0.810962 | 8.879845e-51 | -8.615850e-47 |
| Msa0101180 | Msa0164370 | 0.812773 | 3.580856e-51 | -8.615850e-47 |
| Msa0103790 | Msa0164370 | 0.800671 | 1.291967e-48 | -8.615850e-47 |
| Msa0108870 | Msa0164370 | 0.804084 | 2.559240e-49 | -8.615850e-47 |
| Msa0115370 | Msa0164370 | 0.810440 | 1.151395e-50 | -8.615850e-47 |
| Msa0118540 | Msa0164370 | 0.810135 | 1.340091e-50 | -8.615850e-47 |
| Msa0126770 | Msa0164370 | 0.813729 | 2.208274e-51 | -8.615850e-47 |
| Msa0139990 | Msa0164370 | 0.820644 | 6.150942e-53 | -8.615850e-47 |
| Msa0161410 | Msa0164370 | 0.816500 | 5.355128e-52 | -8.615850e-47 |
| Msa0164370 | Msa0166750 | 0.809187 | 2.141953e-50 | -8.615850e-47 |
| Msa0164370 | Msa0171140 | 0.802403 | 5.704592e-49 | -8.615850e-47 |
| Msa0164370 | Msa0174000 | 0.803953 | 2.725440e-49 | -8.615850e-47 |
| Msa0164370 | Msa0183460 | 0.812941 | 3.290493e-51 | -8.615850e-47 |
| Msa0164370 | Msa0183870 | 0.821606 | 3.692722e-53 | -8.615850e-47 |
| Msa0164370 | Msa0193600 | 0.813017 | 3.167075e-51 | -8.615850e-47 |
| Msa0164370 | Msa0194560 | 0.803254 | 3.805690e-49 | -8.615850e-47 |
| Msa0164370 | Msa0229360 | 0.809037 | 2.306650e-50 | -8.615850e-47 |
| Msa0164370 | Msa0273650 | 0.811916 | 5.511800e-51 | -8.615850e-47 |
| Msa0164370 | Msa0296920 | 0.808612 | 2.843126e-50 | -8.615850e-47 |
| Msa0164370 | Msa0313930 | 0.802359 | 5.823734e-49 | -8.615850e-47 |
| Msa0164370 | Msa0319330 | 0.815558 | 8.692195e-52 | -8.615850e-47 |
| Msa0164370 | Msa0322590 | 0.801969 | 7.004487e-49 | -8.615850e-47 |
| Msa0164370 | Msa0337500 | 0.879155 | 1.568887e-69 | -8.615850e-47 |
| Msa0164370 | Msa0337510 | 0.920405 | 1.334933e-87 | -8.615850e-47 |
| Msa0164370 | Msa0364990 | 0.923468 | 2.552813e-89 | -8.615850e-47 |
| Msa0164370 | Msa0387880 | -0.804891 | 1.737533e-49 | -8.615850e-47 |
| Msa0164370 | Msa0414020 | 0.922124 | 1.478403e-88 | -8.615850e-47 |
| Msa0164370 | Msa0431770 | 0.849582 | 2.947557e-60 | -8.615850e-47 |
| Msa0164370 | Msa0439890 | 0.805653 | 1.203219e-49 | -8.615850e-47 |
| Msa0164370 | Msa0458640 | 0.813915 | 2.009646e-51 | -8.615850e-47 |
| Msa0164370 | Msa0467260 | -0.810739 | 9.925098e-51 | -8.615850e-47 |
| Msa0164370 | Msa0576730 | 0.837677 | 4.512874e-57 | -8.615850e-47 |
| Msa0164370 | Msa0581130 | 0.810627 | 1.049483e-50 | -8.615850e-47 |
| Msa0164370 | Msa0590650 | 0.807515 | 4.867433e-50 | -8.615850e-47 |
| Msa0164370 | Msa0594710 | 0.816172 | 6.341288e-52 | -8.615850e-47 |
| Msa0164370 | Msa0609220 | 0.803460 | 3.448971e-49 | -8.615850e-47 |
| Msa0164370 | Msa0618200 | -0.802986 | 4.322872e-49 | -8.615850e-47 |
| Msa0164370 | Msa0618930 | 0.809779 | 1.598568e-50 | -8.615850e-47 |
| Msa0164370 | Msa0619920 | 0.844143 | 9.073301e-59 | -8.615850e-47 |
| Msa0164370 | Msa0626940 | 0.823982 | 1.032790e-53 | -8.615850e-47 |
| Msa0164370 | Msa0659990 | 0.822803 | 1.948403e-53 | -8.615850e-47 |
| Msa0164370 | Msa0662630 | 0.807305 | 5.393980e-50 | -8.615850e-47 |
| Msa0164370 | Msa0665080 | 0.812346 | 4.440246e-51 | -8.615850e-47 |
| Msa0164370 | Msa0687230 | 0.802922 | 4.456739e-49 | -8.615850e-47 |
| Msa0164370 | Msa0702150 | 0.836692 | 8.063720e-57 | -8.615850e-47 |
| Msa0164370 | Msa0702270 | 0.839158 | 1.873602e-57 | -8.615850e-47 |
| Msa0164370 | Msa0702580 | 0.848002 | 8.086396e-60 | -8.615850e-47 |
| Msa0164370 | Msa0702670 | 0.848686 | 5.232598e-60 | -8.615850e-47 |
| Msa0164370 | Msa0705390 | 0.817107 | 3.915022e-52 | -8.615850e-47 |
| Msa0164370 | Msa0706390 | 0.801112 | 1.050056e-48 | -8.615850e-47 |
| Msa0164370 | Msa0747170 | 0.843745 | 1.159576e-58 | -8.615850e-47 |
| Msa0164370 | Msa0751240 | 0.801770 | 7.698262e-49 | -8.615850e-47 |
| Msa0164370 | Msa0764690 | 0.800031 | 1.744369e-48 | -8.615850e-47 |
| Msa0164370 | Msa0792780 | 0.826631 | 2.439622e-54 | -8.615850e-47 |
| Msa0164370 | Msa0798090 | 0.881568 | 2.154612e-70 | -8.615850e-47 |
| Msa0164370 | Msa0798100 | 0.840799 | 6.994984e-58 | -8.615850e-47 |
| Msa0164370 | Msa0799010 | -0.807864 | 4.104659e-50 | -8.615850e-47 |
| Msa0164370 | Msa0799480 | 0.912978 | 1.047376e-83 | -8.615850e-47 |
| Msa0164370 | Msa0822170 | 0.804242 | 2.372679e-49 | -8.615850e-47 |
| Msa0164370 | Msa0843120 | -0.805190 | 1.504441e-49 | -8.615850e-47 |
| Msa0164370 | Msa0895310 | 0.806252 | 9.001013e-50 | -8.615850e-47 |
| Msa0164370 | Msa0903780 | 0.803287 | 3.746091e-49 | -8.615850e-47 |
| Msa0164370 | Msa0924150 | -0.801389 | 9.212461e-49 | -8.615850e-47 |
| Msa0164370 | Msa0940830 | 0.805457 | 1.322536e-49 | -8.615850e-47 |
| Msa0164370 | Msa0943170 | 0.817442 | 3.290695e-52 | -8.615850e-47 |
| Msa0164370 | Msa0943270 | 0.833941 | 3.992362e-56 | -8.615850e-47 |
| Msa0164370 | Msa0990830 | 0.828506 | 8.657830e-55 | -8.615850e-47 |
| Msa0164370 | Msa1002600 | -0.806864 | 6.686466e-50 | -8.615850e-47 |
| Msa0164370 | Msa1004420 | 0.801156 | 1.028438e-48 | -8.615850e-47 |
| Msa0164370 | Msa1020100 | 0.820770 | 5.755446e-53 | -8.615850e-47 |
| Msa0164370 | Msa1025940 | 0.828696 | 7.786912e-55 | -8.615850e-47 |
| Msa0164370 | Msa1029970 | 0.805434 | 1.337353e-49 | -8.615850e-47 |
| Msa0164370 | Msa1059310 | 0.826942 | 2.056533e-54 | -8.615850e-47 |
| Msa0164370 | Msa1067070 | 0.900973 | 4.280798e-78 | -8.615850e-47 |
| Msa0164370 | Msa1070390 | 0.822504 | 2.286935e-53 | -8.615850e-47 |
| Msa0164370 | Msa1071530 | 0.813832 | 2.096818e-51 | -8.615850e-47 |
| Msa0164370 | Msa1088250 | -0.801959 | 7.038900e-49 | -8.615850e-47 |
| Msa0164370 | Msa1126850 | 0.805797 | 1.122350e-49 | -8.615850e-47 |
| Msa0164370 | Msa1135810 | -0.821056 | 4.944778e-53 | -8.615850e-47 |
| Msa0164370 | Msa1154490 | 0.821238 | 4.491343e-53 | -8.615850e-47 |
| Msa0164370 | Msa1158230 | 0.808652 | 2.787550e-50 | -8.615850e-47 |
| Msa0164370 | Msa1165960 | 0.809501 | 1.833967e-50 | -8.615850e-47 |
| Msa0164370 | Msa1171830 | 0.802888 | 4.530080e-49 | -8.615850e-47 |
| Msa0164370 | Msa1202580 | 0.811036 | 8.557136e-51 | -8.615850e-47 |
| Msa0164370 | Msa1206650 | 0.803363 | 3.612520e-49 | -8.615850e-47 |
| Msa0164370 | Msa1211830 | 0.812814 | 3.507978e-51 | -8.615850e-47 |
| Msa0164370 | Msa1253400 | 0.907064 | 7.585511e-81 | -8.615850e-47 |
| Msa0164370 | Msa1253810 | 0.871473 | 6.655963e-67 | -8.615850e-47 |
| Msa0164370 | Msa1279590 | 0.937919 | 1.581702e-98 | -8.615850e-47 |
| Msa0164370 | Msa1289300 | 0.993179 | 5.637363e-198 | -8.615850e-47 |
| Msa0164370 | Msa1297600 | 0.977717 | 2.422204e-144 | -8.615850e-47 |
| Msa0164370 | Msa1320580 | 0.824468 | 7.942555e-54 | -8.615850e-47 |
| Msa0164370 | Msa1323800 | 0.818886 | 1.551420e-52 | -8.615850e-47 |
| Msa0164370 | Msa1323990 | 0.840689 | 7.473789e-58 | -8.615850e-47 |
| Msa0164370 | Msa1325930 | 0.816771 | 4.657514e-52 | -8.615850e-47 |
| Msa0164370 | Msa1381650 | 0.809348 | 1.978103e-50 | -8.615850e-47 |
| Msa0164370 | Msa1397940 | 0.807815 | 4.204267e-50 | -8.615850e-47 |
| Msa0164370 | Msa1411950 | 0.804679 | 1.923737e-49 | -8.615850e-47 |
| Msa0164370 | Msa1445940 | 0.804318 | 2.287775e-49 | -8.615850e-47 |
| Msa0164370 | Msa1447890 | 0.805377 | 1.375064e-49 | -8.615850e-47 |
| Msa0164370 | Msa1455280 | 0.808938 | 2.422220e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164370 | MtrunA17_Chr2g0328391 | 63.448 | 145 | 48 | 2 | 59 | 199 | 258 | 401 | 9.29e-46 | 165 |
| Msa0164370 | MtrunA17_Chr2g0323051 | 65.000 | 80 | 26 | 1 | 228 | 307 | 227 | 304 | 9.31e-26 | 108 |
| Msa0164370 | MtrunA17_Chr4g0031721 | 43.284 | 134 | 74 | 1 | 69 | 200 | 285 | 418 | 1.53e-24 | 104 |
| Msa0164370 | MtrunA17_Chr4g0031711 | 63.014 | 73 | 27 | 0 | 79 | 151 | 340 | 412 | 2.07e-24 | 104 |
| Msa0164370 | MtrunA17_Chr3g0140681 | 64.384 | 73 | 19 | 1 | 176 | 241 | 201 | 273 | 5.40e-23 | 98.6 |
| Msa0164370 | MtrunA17_Chr4g0031701 | 61.972 | 71 | 27 | 0 | 81 | 151 | 235 | 305 | 1.83e-21 | 95.5 |
| Msa0164370 | MtrunA17_Chr7g0238891 | 48.571 | 105 | 52 | 1 | 82 | 184 | 354 | 458 | 2.23e-21 | 95.5 |
| Msa0164370 | MtrunA17_Chr4g0031731 | 61.765 | 68 | 26 | 0 | 81 | 148 | 235 | 302 | 9.59e-21 | 93.2 |
| Msa0164370 | MtrunA17_Chr4g0023601 | 57.534 | 73 | 28 | 1 | 212 | 281 | 135 | 207 | 1.78e-19 | 89.4 |
| Msa0164370 | MtrunA17_Chr2g0328381 | 41.176 | 119 | 68 | 1 | 71 | 187 | 246 | 364 | 3.65e-18 | 85.5 |
| Msa0164370 | MtrunA17_Chr2g0328361 | 58.065 | 62 | 26 | 0 | 86 | 147 | 260 | 321 | 2.74e-17 | 82.8 |
| Msa0164370 | MtrunA17_Chr2g0328341 | 60.656 | 61 | 21 | 1 | 90 | 147 | 259 | 319 | 3.30e-16 | 79.7 |
| Msa0164370 | MtrunA17_Chr2g0328401 | 56.522 | 69 | 28 | 1 | 80 | 146 | 268 | 336 | 2.58e-15 | 77.0 |
| Msa0164370 | MtrunA17_Chr4g0031741 | 61.818 | 55 | 21 | 0 | 94 | 148 | 278 | 332 | 3.26e-14 | 73.6 |
| Msa0164370 | MtrunA17_Chr2g0328411 | 51.351 | 74 | 29 | 2 | 80 | 146 | 262 | 335 | 5.31e-13 | 70.1 |
| Msa0164370 | MtrunA17_Chr2g0328431 | 50.000 | 74 | 30 | 1 | 80 | 146 | 262 | 335 | 1.16e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164370 | AT1G07530.1 | 38.571 | 140 | 82 | 2 | 58 | 193 | 352 | 491 | 4.79e-21 | 94.7 |
| Msa0164370 | AT2G32290.1 | 74.074 | 54 | 14 | 0 | 228 | 281 | 219 | 272 | 3.40e-20 | 92.0 |
| Msa0164370 | AT4G15210.3 | 68.519 | 54 | 17 | 0 | 228 | 281 | 103 | 156 | 2.94e-19 | 88.6 |
| Msa0164370 | AT4G15210.4 | 68.519 | 54 | 17 | 0 | 228 | 281 | 103 | 156 | 2.94e-19 | 88.6 |
| Msa0164370 | AT4G15210.2 | 68.519 | 54 | 17 | 0 | 228 | 281 | 156 | 209 | 3.02e-19 | 88.6 |
| Msa0164370 | AT4G15210.1 | 68.519 | 54 | 17 | 0 | 228 | 281 | 156 | 209 | 3.63e-19 | 88.6 |
| Msa0164370 | AT2G29060.2 | 39.669 | 121 | 71 | 1 | 80 | 198 | 264 | 384 | 8.37e-19 | 87.8 |
| Msa0164370 | AT2G29060.1 | 39.669 | 121 | 71 | 1 | 80 | 198 | 301 | 421 | 9.65e-19 | 87.8 |
| Msa0164370 | AT2G37650.1 | 44.444 | 99 | 53 | 1 | 88 | 184 | 335 | 433 | 1.21e-17 | 84.7 |
| Msa0164370 | AT2G37650.2 | 44.444 | 99 | 53 | 1 | 88 | 184 | 323 | 421 | 1.41e-17 | 84.3 |
| Msa0164370 | AT1G07520.2 | 61.194 | 67 | 23 | 1 | 82 | 148 | 139 | 202 | 2.25e-17 | 83.6 |
| Msa0164370 | AT1G07520.4 | 61.194 | 67 | 23 | 1 | 82 | 148 | 139 | 202 | 2.25e-17 | 83.6 |
| Msa0164370 | AT1G07520.3 | 62.121 | 66 | 22 | 1 | 82 | 147 | 304 | 366 | 2.56e-17 | 83.6 |
| Msa0164370 | AT1G07520.1 | 62.121 | 66 | 22 | 1 | 82 | 147 | 303 | 365 | 2.70e-17 | 83.6 |
| Msa0164370 | AT2G29065.1 | 60.345 | 58 | 23 | 0 | 94 | 151 | 246 | 303 | 7.97e-13 | 69.7 |
| Msa0164370 | AT3G46600.3 | 41.935 | 93 | 51 | 2 | 59 | 151 | 142 | 231 | 2.64e-12 | 68.2 |
| Msa0164370 | AT3G46600.1 | 41.935 | 93 | 51 | 2 | 59 | 151 | 174 | 263 | 2.71e-12 | 68.2 |
| Msa0164370 | AT4G00490.1 | 50.909 | 55 | 27 | 0 | 228 | 282 | 236 | 290 | 3.85e-12 | 67.8 |
| Msa0164370 | AT5G59450.1 | 46.667 | 75 | 37 | 1 | 80 | 151 | 204 | 278 | 4.91e-12 | 67.4 |
| Msa0164370 | AT2G45880.1 | 34.043 | 94 | 47 | 1 | 204 | 282 | 350 | 443 | 4.37e-11 | 64.7 |
Find 101 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATGTTTATAGATTAATT+AGG | 0.166605 | 1_4:+43711180 | Msa0164370:three_prime_UTR |
| GCAGGGAGAACAAGCTTTAT+TGG | 0.217900 | 1_4:+43707262 | Msa0164370:intron |
| CAGCAGCATTAAACATCTTT+TGG | 0.245647 | 1_4:-43708224 | None:intergenic |
| TCTCGTCTTTCGCGGTTTCT+TGG | 0.271778 | 1_4:+43709897 | Msa0164370:CDS |
| ATATGTTTATAGATTAATTA+GGG | 0.278241 | 1_4:+43711181 | Msa0164370:three_prime_UTR |
| CTTCAAATAGTCAGCCATTC+TGG | 0.282618 | 1_4:-43711032 | None:intergenic |
| AGTGACTATGACAATGTAAT+TGG | 0.287106 | 1_4:+43708673 | Msa0164370:CDS |
| TACCATTAATACCTCTTCTA+TGG | 0.297338 | 1_4:-43705503 | None:intergenic |
| AAGCTTAATAGCAGCCTTAC+TGG | 0.305599 | 1_4:+43711208 | Msa0164370:three_prime_UTR |
| GGCTGGGTATTTCCTGGTAT+TGG | 0.319528 | 1_4:+43710555 | Msa0164370:CDS |
| GAAGAGTTATAAAGAGAATA+TGG | 0.323678 | 1_4:+43710440 | Msa0164370:CDS |
| GGCCATAGAAGAGGTATTAA+TGG | 0.329008 | 1_4:+43705501 | Msa0164370:exon |
| AGAAAATTACCTTGTAAGTA+TGG | 0.331370 | 1_4:-43705538 | None:intergenic |
| AGGAAGCATTCTTGTCCTTC+AGG | 0.331779 | 1_4:+43708110 | Msa0164370:CDS |
| GTTATGTGGATTTCACTCTT+TGG | 0.332758 | 1_4:+43709863 | Msa0164370:CDS |
| TCGCGGTTTCTTGGTAAAAC+AGG | 0.335407 | 1_4:+43709906 | Msa0164370:CDS |
| TGCGATTGAAGCGCATGGTT+GGG | 0.341493 | 1_4:+43708169 | Msa0164370:CDS |
| AATCCTGGACTCACCGCTTA+TGG | 0.358745 | 1_4:-43710921 | None:intergenic |
| TTTCTGCTTACTTTCAGATA+TGG | 0.359746 | 1_4:-43708703 | None:intergenic |
| CCGCTTATGGTGACATCATA+AGG | 0.359764 | 1_4:-43710908 | None:intergenic |
| TCCCTCTCATGCATGATATC+TGG | 0.374941 | 1_4:-43710951 | None:intergenic |
| TGTGGATTTGAGGACCCTTT+TGG | 0.385294 | 1_4:+43708022 | Msa0164370:CDS |
| CTTTAGGTTCCTTTGTTATG+TGG | 0.393628 | 1_4:+43709849 | Msa0164370:intron |
| TGCCTAGGCTGGGTATTTCC+TGG | 0.407995 | 1_4:+43710549 | Msa0164370:CDS |
| AGCTGATAATCTGTGTTTCA+AGG | 0.417769 | 1_4:+43707285 | Msa0164370:CDS |
| ATGAATTGTTGAAGCAGAAT+AGG | 0.424251 | 1_4:+43708090 | Msa0164370:CDS |
| CTGTGTCTGCTAATGACAAT+AGG | 0.426533 | 1_4:+43708060 | Msa0164370:CDS |
| ATAAGGGCTGGTGCACCTAC+TGG | 0.427494 | 1_4:-43710891 | None:intergenic |
| ATAGTCAGCCATTCTGGCTC+TGG | 0.443426 | 1_4:-43711026 | None:intergenic |
| ATGCGATTGAAGCGCATGGT+TGG | 0.447219 | 1_4:+43708168 | Msa0164370:CDS |
| TATATCTATATATATGTTCA+AGG | 0.447915 | 1_4:-43711116 | None:intergenic |
| AGAGGGATGTTGTGGATTTG+AGG | 0.451718 | 1_4:+43708012 | Msa0164370:CDS |
| ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 1_4:+43707957 | Msa0164370:CDS |
| TATGATAATTTAATCAAAGT+TGG | 0.470643 | 1_4:+43711251 | Msa0164370:three_prime_UTR |
| CATATATAATATTTGTGTAC+TGG | 0.480267 | 1_4:-43708199 | None:intergenic |
| ATATCTGGCCTCACTAATCC+TGG | 0.482839 | 1_4:-43710936 | None:intergenic |
| AAACAGCATCTCGTCTTTCG+CGG | 0.485483 | 1_4:+43709889 | Msa0164370:CDS |
| GAGGTAGGACTTGGCCCTGC+TGG | 0.486945 | 1_4:+43710498 | Msa0164370:CDS |
| CGAAGAAACAAGGGAGGAAG+AGG | 0.489890 | 1_4:+43707994 | Msa0164370:CDS |
| TTGAAGCGCATGGTTGGGGC+TGG | 0.490691 | 1_4:+43708174 | Msa0164370:CDS |
| ATGTATGATAACAGTAATGT+TGG | 0.492964 | 1_4:+43706313 | Msa0164370:CDS |
| CTTATAAGCGTGTACGTGGC+AGG | 0.500665 | 1_4:+43710750 | Msa0164370:CDS |
| TCACCATAAGCGGTGAGTCC+AGG | 0.505916 | 1_4:+43710918 | Msa0164370:CDS |
| CGCTTATGGTGACATCATAA+GGG | 0.505983 | 1_4:-43710907 | None:intergenic |
| GCGATTGAAGCGCATGGTTG+GGG | 0.509648 | 1_4:+43708170 | Msa0164370:CDS |
| CGCGGTTTCTTGGTAAAACA+GGG | 0.510516 | 1_4:+43709907 | Msa0164370:CDS |
| ACCTCCTCTTCTTCTCCAGA+TGG | 0.522445 | 1_4:+43709965 | Msa0164370:CDS |
| AAAGCTTAATGTAAGAATCT+CGG | 0.527749 | 1_4:-43710696 | None:intergenic |
| AGGGAGGAAGAGGGATGTTG+TGG | 0.530372 | 1_4:+43708004 | Msa0164370:CDS |
| TTGAGATTCCAGAGCCAGAA+TGG | 0.530384 | 1_4:+43711018 | Msa0164370:three_prime_UTR |
| TTGTCAAATATGAACCAGTA+AGG | 0.531051 | 1_4:-43711222 | None:intergenic |
| AGATATCTAAGTTCTCCAGC+AGG | 0.532605 | 1_4:-43710513 | None:intergenic |
| ATGGTGAAATCAAGGTCGTA+AGG | 0.534375 | 1_4:+43705455 | Msa0164370:five_prime_UTR |
| AGGTGATGCATCACAGAGAA+TGG | 0.535230 | 1_4:+43708130 | Msa0164370:CDS |
| CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 1_4:-43708125 | None:intergenic |
| CTTGTGCACACAGAACCAAA+AGG | 0.550869 | 1_4:-43708037 | None:intergenic |
| TATGGTGACATCATAAGGGC+TGG | 0.556208 | 1_4:-43710903 | None:intergenic |
| TACATGCCATGGTGAAATCA+AGG | 0.560190 | 1_4:+43705447 | Msa0164370:five_prime_UTR |
| AATGGCTGACTATTTGAAGC+AGG | 0.562267 | 1_4:+43711036 | Msa0164370:three_prime_UTR |
| CGAACCATCTGGAGAAGAAG+AGG | 0.566975 | 1_4:-43709969 | None:intergenic |
| ATGTTTATAGATTAATTAGG+GGG | 0.570090 | 1_4:+43711183 | Msa0164370:three_prime_UTR |
| GCTTTACTCATGATGCTGAA+AGG | 0.577029 | 1_4:+43710714 | Msa0164370:CDS |
| TTGTGCACACAGAACCAAAA+GGG | 0.577974 | 1_4:-43708036 | None:intergenic |
| CCTTATGATGTCACCATAAG+CGG | 0.579231 | 1_4:+43710908 | Msa0164370:CDS |
| GAAAGATAAGGCCATAGAAG+AGG | 0.588351 | 1_4:+43705492 | Msa0164370:five_prime_UTR |
| GCCAGATATCATGCATGAGA+GGG | 0.594778 | 1_4:+43710950 | Msa0164370:exon |
| GGCCAGATATCATGCATGAG+AGG | 0.594930 | 1_4:+43710949 | Msa0164370:exon |
| AATTGAAGCTAAGAAAGATA+AGG | 0.595945 | 1_4:+43705480 | Msa0164370:five_prime_UTR |
| ATAGACATTGAGGTAGGACT+TGG | 0.597655 | 1_4:+43710489 | Msa0164370:CDS |
| TGAGCTACTGATAGACATTG+AGG | 0.599509 | 1_4:+43710479 | Msa0164370:CDS |
| TGGTGAACTTGATGGAGGGA+AGG | 0.605242 | 1_4:+43707965 | Msa0164370:CDS |
| ACTAAGCCACCATACTTACA+AGG | 0.607997 | 1_4:+43705529 | Msa0164370:CDS |
| CAGTCTTATAAGCGTGTACG+TGG | 0.609552 | 1_4:+43710746 | Msa0164370:CDS |
| GCGAATGCGATTGAAGCGCA+TGG | 0.613896 | 1_4:+43708164 | Msa0164370:CDS |
| AAGGCACGTTCGAAGAAACA+AGG | 0.620215 | 1_4:+43707984 | Msa0164370:CDS |
| CAGAGATCCTTAAAAGCTCG+AGG | 0.621293 | 1_4:+43710994 | Msa0164370:three_prime_UTR |
| AAATTACCTTGTAAGTATGG+TGG | 0.624420 | 1_4:-43705535 | None:intergenic |
| AATGAACTTGCTACATGCCA+TGG | 0.628116 | 1_4:+43705436 | Msa0164370:five_prime_UTR |
| TATTTGAAGCAGGATGGCAA+AGG | 0.629381 | 1_4:+43711046 | Msa0164370:three_prime_UTR |
| ACATTAAATTCTCCAATACC+AGG | 0.631717 | 1_4:-43710567 | None:intergenic |
| GATATCTAAGTTCTCCAGCA+GGG | 0.632849 | 1_4:-43710512 | None:intergenic |
| CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 1_4:+43707960 | Msa0164370:CDS |
| TACCAGGAAATACCCAGCCT+AGG | 0.637604 | 1_4:-43710551 | None:intergenic |
| TGGTGAAATCAAGGTCGTAA+GGG | 0.637782 | 1_4:+43705456 | Msa0164370:five_prime_UTR |
| ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 1_4:+43707926 | Msa0164370:intron |
| CTACTGATAGACATTGAGGT+AGG | 0.639731 | 1_4:+43710483 | Msa0164370:CDS |
| AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 1_4:+43707961 | Msa0164370:CDS |
| GCTGACTATTTGAAGCAGGA+TGG | 0.643683 | 1_4:+43711040 | Msa0164370:three_prime_UTR |
| ACCATCTGGAGAAGAAGAGG+AGG | 0.646740 | 1_4:-43709966 | None:intergenic |
| GAAGAAACAAGGGAGGAAGA+GGG | 0.647199 | 1_4:+43707995 | Msa0164370:CDS |
| TATGTTTATAGATTAATTAG+GGG | 0.649576 | 1_4:+43711182 | Msa0164370:three_prime_UTR |
| TTACGACCTTGATTTCACCA+TGG | 0.665301 | 1_4:-43705453 | None:intergenic |
| CGGTGAGTCCAGGATTAGTG+AGG | 0.671978 | 1_4:+43710928 | Msa0164370:CDS |
| GCAAGGGACAGGCTTCCAGT+AGG | 0.671994 | 1_4:+43710876 | Msa0164370:intron |
| GAGTGAAATCCACATAACAA+AGG | 0.672556 | 1_4:-43709858 | None:intergenic |
| AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 1_4:+43707941 | Msa0164370:CDS |
| TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 1_4:+43707923 | Msa0164370:intron |
| GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 1_4:+43707945 | Msa0164370:CDS |
| TGTACGTGGCAGGTTGACCG+AGG | 0.702164 | 1_4:+43710760 | Msa0164370:CDS |
| CACGTTCGAAGAAACAAGGG+AGG | 0.709283 | 1_4:+43707988 | Msa0164370:CDS |
| AGGCACGTTCGAAGAAACAA+GGG | 0.717525 | 1_4:+43707985 | Msa0164370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATGATTTATAGTTTTT+TGG | + | chr1_4:43705744-43705763 | Msa0164370:intron | 10.0% |
| !! | TATATGTTTATAGATTAATT+AGG | + | chr1_4:43711180-43711199 | Msa0164370:three_prime_UTR | 10.0% |
| !! | ATATGTTTATAGATTAATTA+GGG | + | chr1_4:43711181-43711200 | Msa0164370:three_prime_UTR | 10.0% |
| !!! | TGTATGTTGATTTTTTTATT+TGG | + | chr1_4:43705660-43705679 | Msa0164370:intron | 15.0% |
| !!! | ATATATGTTTAGTTTGATTA+TGG | + | chr1_4:43705701-43705720 | Msa0164370:intron | 15.0% |
| !!! | GATTTTGAAAATACTTTTAT+GGG | + | chr1_4:43705841-43705860 | Msa0164370:intron | 15.0% |
| !!! | ATGATTGAATTGTTTTTATT+TGG | + | chr1_4:43705932-43705951 | Msa0164370:intron | 15.0% |
| !! | TGATTATAATGTAAAATAAG+TGG | + | chr1_4:43707434-43707453 | Msa0164370:intron | 15.0% |
| !!! | ATATATGTTGTTTTGTAAAT+AGG | + | chr1_4:43708554-43708573 | Msa0164370:intron | 15.0% |
| !! | AAAATAAAACAACTTTCAAA+TGG | - | chr1_4:43708818-43708837 | None:intergenic | 15.0% |
| !!! | TTTATTTTACAAATGAATTG+AGG | + | chr1_4:43708830-43708849 | Msa0164370:intron | 15.0% |
| !! | AAATTATTGAGAAATAATGT+TGG | + | chr1_4:43709024-43709043 | Msa0164370:intron | 15.0% |
| !! | TTACATGAATTTAATATCTT+TGG | - | chr1_4:43710000-43710019 | None:intergenic | 15.0% |
| !! | AAAGATATTAAATTCATGTA+AGG | + | chr1_4:43709999-43710018 | Msa0164370:intron | 15.0% |
| !! | AAAGAAGTAATAATAAAAAG+TGG | - | chr1_4:43710315-43710334 | None:intergenic | 15.0% |
| !!! | CATAACAAATTTTAGTAAAA+TGG | - | chr1_4:43710816-43710835 | None:intergenic | 15.0% |
| !! | TGGAATATTTATATGAAAAT+TGG | + | chr1_4:43710849-43710868 | Msa0164370:intron | 15.0% |
| !! | TATATCTATATATATGTTCA+AGG | - | chr1_4:43711119-43711138 | None:intergenic | 15.0% |
| !! | TATGTTTATAGATTAATTAG+GGG | + | chr1_4:43711182-43711201 | Msa0164370:three_prime_UTR | 15.0% |
| !!! | TTATTTGGTGTTTGTTTTAT+AGG | + | chr1_4:43705675-43705694 | Msa0164370:intron | 20.0% |
| !!! | GGATTTTGAAAATACTTTTA+TGG | + | chr1_4:43705840-43705859 | Msa0164370:intron | 20.0% |
| !! | TATTCTAAATAGATGTTAAC+AGG | - | chr1_4:43705969-43705988 | None:intergenic | 20.0% |
| !!! | TATTTAGAATATAGTCTGTT+TGG | + | chr1_4:43705978-43705997 | Msa0164370:intron | 20.0% |
| !!! | TGCTAAAAAATATTGACTTT+TGG | + | chr1_4:43706166-43706185 | Msa0164370:intron | 20.0% |
| !!! | TTTAGTACTTGATTTTTATC+TGG | + | chr1_4:43706212-43706231 | Msa0164370:intron | 20.0% |
| !! | GTAAAAAAAATCTTTGCATT+GGG | - | chr1_4:43706479-43706498 | None:intergenic | 20.0% |
| !! | TGTAAAAAAAATCTTTGCAT+TGG | - | chr1_4:43706480-43706499 | None:intergenic | 20.0% |
| !! | TGTTGAAGTTGTTTATATAT+AGG | + | chr1_4:43706669-43706688 | Msa0164370:intron | 20.0% |
| !!! | TTGTAGCTTAAATTTTGAAT+TGG | + | chr1_4:43706895-43706914 | Msa0164370:intron | 20.0% |
| !!! | TGTAGCTTAAATTTTGAATT+GGG | + | chr1_4:43706896-43706915 | Msa0164370:intron | 20.0% |
| !! | AGATTTGATGAAGATAAAAA+TGG | + | chr1_4:43706947-43706966 | Msa0164370:intron | 20.0% |
| !! | GATTTGATGAAGATAAAAAT+GGG | + | chr1_4:43706948-43706967 | Msa0164370:intron | 20.0% |
| !!! | ATTTTTGAAAAACTAGCAAT+TGG | + | chr1_4:43707519-43707538 | Msa0164370:intron | 20.0% |
| !! | CATATATAATATTTGTGTAC+TGG | - | chr1_4:43708202-43708221 | None:intergenic | 20.0% |
| !!! | AATGTGCAAATTTTTTGAAA+GGG | - | chr1_4:43708287-43708306 | None:intergenic | 20.0% |
| !!! | AAATGTGCAAATTTTTTGAA+AGG | - | chr1_4:43708288-43708307 | None:intergenic | 20.0% |
| !!! | TTTAAAAAACATGGCAATTT+TGG | - | chr1_4:43708380-43708399 | None:intergenic | 20.0% |
| !!! | ACATACATCTTTAAAAAACA+TGG | - | chr1_4:43708389-43708408 | None:intergenic | 20.0% |
| !!! | GTTTTTTAAAGATGTATGTT+TGG | + | chr1_4:43708390-43708409 | Msa0164370:intron | 20.0% |
| !!! | AGAACACATATAATTGTTTT+TGG | + | chr1_4:43708898-43708917 | Msa0164370:intron | 20.0% |
| !! | GTAGGTATTTATTGAATAAA+TGG | + | chr1_4:43708947-43708966 | Msa0164370:intron | 20.0% |
| !! | TGTTATAATAATGAGTGAAT+AGG | + | chr1_4:43709051-43709070 | Msa0164370:intron | 20.0% |
| !! | ACTATATGAATTTCAGAATT+TGG | + | chr1_4:43709292-43709311 | Msa0164370:intron | 20.0% |
| !! | GTATGTAACAAACAAAAATA+TGG | - | chr1_4:43709349-43709368 | None:intergenic | 20.0% |
| !!! | ATATAGTTAGTATCACTTTT+AGG | + | chr1_4:43709430-43709449 | Msa0164370:intron | 20.0% |
| !! | ACAGACGTAATAAAATTAAT+AGG | - | chr1_4:43709548-43709567 | None:intergenic | 20.0% |
| !!! | AAGCATTTATTTTTATCTGA+TGG | + | chr1_4:43709930-43709949 | Msa0164370:CDS | 20.0% |
| !! | TATTATATCTCTTTCTCTAT+AGG | + | chr1_4:43710099-43710118 | Msa0164370:intron | 20.0% |
| !! | TGAACTAAAACAAAAGAATA+CGG | - | chr1_4:43710178-43710197 | None:intergenic | 20.0% |
| !! | TGTTATGTAATGTTTAATGT+TGG | + | chr1_4:43710829-43710848 | Msa0164370:intron | 20.0% |
| !! | ATGTTTATAGATTAATTAGG+GGG | + | chr1_4:43711183-43711202 | Msa0164370:three_prime_UTR | 20.0% |
| ! | AATTGAAGCTAAGAAAGATA+AGG | + | chr1_4:43705480-43705499 | Msa0164370:five_prime_UTR | 25.0% |
| ! | AGAAAATTACCTTGTAAGTA+TGG | - | chr1_4:43705541-43705560 | None:intergenic | 25.0% |
| !!! | TGTTTAGTTTGATTATGGTA+TGG | + | chr1_4:43705706-43705725 | Msa0164370:intron | 25.0% |
| !!! | CATGTTTTGGAAATTTTGTT+TGG | + | chr1_4:43705771-43705790 | Msa0164370:intron | 25.0% |
| !!! | AAATTTTGTTTGGTGTTGAA+GGG | + | chr1_4:43705781-43705800 | Msa0164370:intron | 25.0% |
| !! | TACTTTTATGGGTTTTCAAT+TGG | + | chr1_4:43705852-43705871 | Msa0164370:intron | 25.0% |
| !! | ATTTCATGTTTAACTTTGAG+AGG | + | chr1_4:43706040-43706059 | Msa0164370:intron | 25.0% |
| !!! | GAGAGGATTTTGATATAATT+TGG | + | chr1_4:43706057-43706076 | Msa0164370:intron | 25.0% |
| ! | ATGTATGATAACAGTAATGT+TGG | + | chr1_4:43706313-43706332 | Msa0164370:CDS | 25.0% |
| !! | TATTTAGAATATAGTCTGTC+TGG | + | chr1_4:43706383-43706402 | Msa0164370:intron | 25.0% |
| ! | TTTATGTATCTTTCCATGAT+TGG | - | chr1_4:43706635-43706654 | None:intergenic | 25.0% |
| !! | CTTTATCACTCTTTAAGAAA+AGG | + | chr1_4:43706760-43706779 | Msa0164370:intron | 25.0% |
| !! | ACAAATGAAAGAGTACAATA+TGG | - | chr1_4:43706853-43706872 | None:intergenic | 25.0% |
| ! | AAACTGAAAAAGATTTGAGT+AGG | + | chr1_4:43707005-43707024 | Msa0164370:intron | 25.0% |
| ! | TATCTGTGATTGTAAATTTG+TGG | + | chr1_4:43707155-43707174 | Msa0164370:intron | 25.0% |
| ! | TATGTAATATTTAAGCCATG+AGG | - | chr1_4:43707399-43707418 | None:intergenic | 25.0% |
| !! | TTTTTGCCTAATCTTTCTAA+TGG | + | chr1_4:43707479-43707498 | Msa0164370:intron | 25.0% |
| ! | AATTCTCCATTAGAAAGATT+AGG | - | chr1_4:43707488-43707507 | None:intergenic | 25.0% |
| ! | TTGAAATTTATTGTGTGATC+TGG | + | chr1_4:43707704-43707723 | Msa0164370:intron | 25.0% |
| !!! | CATAAAATGTTTTTTGCTAC+AGG | + | chr1_4:43707817-43707836 | Msa0164370:intron | 25.0% |
| ! | GTACAGAAATTTGAATTCAT+TGG | + | chr1_4:43707862-43707881 | Msa0164370:intron | 25.0% |
| !! | TTTTCTTTTTGTAAGTTGCA+TGG | - | chr1_4:43707888-43707907 | None:intergenic | 25.0% |
| ! | TTAAAGATGTATGTTTGGAT+TGG | + | chr1_4:43708395-43708414 | Msa0164370:intron | 25.0% |
| ! | ATAATTGTGTTTGTTCATGA+AGG | + | chr1_4:43708458-43708477 | Msa0164370:intron | 25.0% |
| ! | TAGGAAACTTCTATTTGATT+AGG | + | chr1_4:43708573-43708592 | Msa0164370:intron | 25.0% |
| ! | GTTAGAGATGAGAAAATTAA+GGG | - | chr1_4:43708616-43708635 | None:intergenic | 25.0% |
| ! | AGTTAGAGATGAGAAAATTA+AGG | - | chr1_4:43708617-43708636 | None:intergenic | 25.0% |
| !!! | TCTCTAACTTTTGTTTATTG+TGG | + | chr1_4:43708628-43708647 | Msa0164370:intron | 25.0% |
| !! | ATTTTACAAATGAATTGAGG+TGG | + | chr1_4:43708833-43708852 | Msa0164370:intron | 25.0% |
| !!! | TTTGGAATTTTGAACTTCAT+TGG | + | chr1_4:43708916-43708935 | Msa0164370:intron | 25.0% |
| ! | CATGTATATTATCTTGCATA+TGG | + | chr1_4:43708970-43708989 | Msa0164370:intron | 25.0% |
| ! | AGTTCCTGATGATTATATTT+AGG | + | chr1_4:43709108-43709127 | Msa0164370:intron | 25.0% |
| ! | CAAACCTAAATATAATCATC+AGG | - | chr1_4:43709115-43709134 | None:intergenic | 25.0% |
| ! | CATAAAATAAGTTATCACCA+AGG | - | chr1_4:43709175-43709194 | None:intergenic | 25.0% |
| !! | TCATTGAAGATATTTTGCAT+TGG | - | chr1_4:43709226-43709245 | None:intergenic | 25.0% |
| !! | TATCTTCAATGATTTGTGTA+TGG | + | chr1_4:43709234-43709253 | Msa0164370:intron | 25.0% |
| ! | AATTCATATAGTTGAAGAAC+TGG | - | chr1_4:43709284-43709303 | None:intergenic | 25.0% |
| ! | GTAACAAACAAAAATATGGT+GGG | - | chr1_4:43709345-43709364 | None:intergenic | 25.0% |
| ! | TGTAACAAACAAAAATATGG+TGG | - | chr1_4:43709346-43709365 | None:intergenic | 25.0% |
| !! | TTTGTTTGTTACATACTAGA+TGG | + | chr1_4:43709353-43709372 | Msa0164370:intron | 25.0% |
| !! | TTTAACTTCTAATGCAAATC+AGG | + | chr1_4:43709468-43709487 | Msa0164370:intron | 25.0% |
| ! | GTTATTGAGGGTAATTAAAT+AGG | + | chr1_4:43709736-43709755 | Msa0164370:intron | 25.0% |
| !! | TTTGGAATTTCACATACTTT+AGG | + | chr1_4:43709833-43709852 | Msa0164370:intron | 25.0% |
| !! | TATGTTGTTTGTTCATGATT+TGG | - | chr1_4:43710074-43710093 | None:intergenic | 25.0% |
| ! | GATAGTAATAGAATATGCAA+AGG | - | chr1_4:43710211-43710230 | None:intergenic | 25.0% |
| !!! | TTCAAGTTTTGCTTATGTTT+AGG | - | chr1_4:43710279-43710298 | None:intergenic | 25.0% |
| ! | GAAGAGTTATAAAGAGAATA+TGG | + | chr1_4:43710440-43710459 | Msa0164370:CDS | 25.0% |
| ! | AAAGCTTAATGTAAGAATCT+CGG | - | chr1_4:43710699-43710718 | None:intergenic | 25.0% |
| ! | ATATGAAAATTGGAAATGCA+AGG | + | chr1_4:43710859-43710878 | Msa0164370:intron | 25.0% |
| ! | TATGAAAATTGGAAATGCAA+GGG | + | chr1_4:43710860-43710879 | Msa0164370:intron | 25.0% |
| !! | GTTTTAATCTGTTGCAGAAA+AGG | + | chr1_4:43705411-43705430 | Msa0164370:five_prime_UTR | 30.0% |
| TACCATTAATACCTCTTCTA+TGG | - | chr1_4:43705506-43705525 | None:intergenic | 30.0% | |
| AAATTACCTTGTAAGTATGG+TGG | - | chr1_4:43705538-43705557 | None:intergenic | 30.0% | |
| ! | ACTTACAAGGTAATTTTCTG+AGG | + | chr1_4:43705542-43705561 | Msa0164370:intron | 30.0% |
| ! | ATGTGTTGTGACATGTTTTT+GGG | + | chr1_4:43705610-43705629 | Msa0164370:intron | 30.0% |
| !!! | GTTTTTTGGTATGCATGTTT+TGG | + | chr1_4:43705758-43705777 | Msa0164370:intron | 30.0% |
| !!! | GAAATTTTGTTTGGTGTTGA+AGG | + | chr1_4:43705780-43705799 | Msa0164370:intron | 30.0% |
| ! | TTGGTTTGATACATTTAGCT+TGG | + | chr1_4:43706076-43706095 | Msa0164370:intron | 30.0% |
| !!! | ATTTAGCTTGGTGTTTTTGA+TGG | + | chr1_4:43706088-43706107 | Msa0164370:intron | 30.0% |
| ! | CACAAGATTCTAGAGAAAAT+AGG | + | chr1_4:43706124-43706143 | Msa0164370:intron | 30.0% |
| TAATCTAAACCTGTTTCAGA+TGG | - | chr1_4:43706454-43706473 | None:intergenic | 30.0% | |
| !!! | TTTTACAGAAAAGAGCATTC+TGG | + | chr1_4:43706493-43706512 | Msa0164370:intron | 30.0% |
| ! | AACTGAGCATTTAAAATCTC+TGG | - | chr1_4:43707135-43707154 | None:intergenic | 30.0% |
| GTGATTGTAAATTTGTGGTA+AGG | + | chr1_4:43707160-43707179 | Msa0164370:intron | 30.0% | |
| ! | GTTAGGTTTTTCTGTGAAAT+TGG | + | chr1_4:43707211-43707230 | Msa0164370:intron | 30.0% |
| ! | ATATTGGGGAAAAGGTTTTA+AGG | - | chr1_4:43707603-43707622 | None:intergenic | 30.0% |
| GGAAATAATTCTCAATGCAA+TGG | + | chr1_4:43707644-43707663 | Msa0164370:intron | 30.0% | |
| AATTCTCAATGCAATGGTTA+TGG | + | chr1_4:43707650-43707669 | Msa0164370:intron | 30.0% | |
| ATGAATTGTTGAAGCAGAAT+AGG | + | chr1_4:43708090-43708109 | Msa0164370:CDS | 30.0% | |
| ! | GAGTGTTTAGATTTGTTTGT+AGG | + | chr1_4:43708422-43708441 | Msa0164370:intron | 30.0% |
| !! | AAGCTAAGTTGATGTATCAT+AGG | - | chr1_4:43708498-43708517 | None:intergenic | 30.0% |
| AGTGACTATGACAATGTAAT+TGG | + | chr1_4:43708673-43708692 | Msa0164370:CDS | 30.0% | |
| TTTCTGCTTACTTTCAGATA+TGG | - | chr1_4:43708706-43708725 | None:intergenic | 30.0% | |
| TCTGAATTATGAATCTTGCA+TGG | + | chr1_4:43708752-43708771 | Msa0164370:intron | 30.0% | |
| AGACTTACAAATCCTTAAAC+AGG | - | chr1_4:43708779-43708798 | None:intergenic | 30.0% | |
| ! | CAAATGGTGTAAAAGCATAT+TGG | - | chr1_4:43708802-43708821 | None:intergenic | 30.0% |
| !!! | AGACTCACAATTTTTTTCCT+TGG | + | chr1_4:43709155-43709174 | Msa0164370:intron | 30.0% |
| AATTTCTGTCTCCTTTACTT+TGG | + | chr1_4:43709689-43709708 | Msa0164370:intron | 30.0% | |
| ! | GATTTGGTTTCTAAACCATA+AGG | - | chr1_4:43710058-43710077 | None:intergenic | 30.0% |
| TCATTTAAACTTACAGACAG+TGG | - | chr1_4:43710245-43710264 | None:intergenic | 30.0% | |
| ACATTAAATTCTCCAATACC+AGG | - | chr1_4:43710570-43710589 | None:intergenic | 30.0% | |
| TGAACATATATGTATACACG+TGG | - | chr1_4:43710633-43710652 | None:intergenic | 30.0% | |
| CGTGTATACATATATGTTCA+TGG | + | chr1_4:43710633-43710652 | Msa0164370:intron | 30.0% | |
| !! | CTCTGAGGAAATTTTGTATT+TGG | - | chr1_4:43710979-43710998 | None:intergenic | 30.0% |
| TGAAGAAACTGATGAAAAAG+AGG | + | chr1_4:43711084-43711103 | Msa0164370:three_prime_UTR | 30.0% | |
| GAAGAAACTGATGAAAAAGA+GGG | + | chr1_4:43711085-43711104 | Msa0164370:three_prime_UTR | 30.0% | |
| TTGTCAAATATGAACCAGTA+AGG | - | chr1_4:43711225-43711244 | None:intergenic | 30.0% | |
| ! | CATGTGTTGTGACATGTTTT+TGG | + | chr1_4:43705609-43705628 | Msa0164370:intron | 35.0% |
| !!! | GACATGTTTTTGGGTATGTT+TGG | + | chr1_4:43705619-43705638 | Msa0164370:intron | 35.0% |
| !!! | ATGTTTTTGGGTATGTTTGG+TGG | + | chr1_4:43705622-43705641 | Msa0164370:intron | 35.0% |
| TATTGCTGAAAATGTGTGTC+TGG | + | chr1_4:43705819-43705838 | Msa0164370:intron | 35.0% | |
| TGAGTAATTGAAGACTCTTG+TGG | + | chr1_4:43705904-43705923 | Msa0164370:intron | 35.0% | |
| !! | TGGTCTCATCATTTTTCTTG+AGG | + | chr1_4:43705998-43706017 | Msa0164370:intron | 35.0% |
| !! | GTGTTTTTGATGGTTACAGT+TGG | + | chr1_4:43706098-43706117 | Msa0164370:intron | 35.0% |
| !! | TCTGGTCTCATCATTTTTCT+TGG | + | chr1_4:43706401-43706420 | Msa0164370:intron | 35.0% |
| TAAAAATAAGGAAGACAGGG+AGG | - | chr1_4:43706573-43706592 | None:intergenic | 35.0% | |
| GCGTAAAAATAAGGAAGACA+GGG | - | chr1_4:43706576-43706595 | None:intergenic | 35.0% | |
| ! | TGAGCTTTGGCGTAAAAATA+AGG | - | chr1_4:43706585-43706604 | None:intergenic | 35.0% |
| !! | TATGTGTTGCTTATGAGCTT+TGG | - | chr1_4:43706598-43706617 | None:intergenic | 35.0% |
| AACTTCATGAGTACCAATCA+TGG | + | chr1_4:43706619-43706638 | Msa0164370:intron | 35.0% | |
| TGAATTGGGTGTTCTTATTG+AGG | + | chr1_4:43706910-43706929 | Msa0164370:intron | 35.0% | |
| AGATAGTGATCCTATGATAG+AGG | + | chr1_4:43707066-43707085 | Msa0164370:intron | 35.0% | |
| TGGATTTCTGACTATGCTAT+TGG | + | chr1_4:43707094-43707113 | Msa0164370:intron | 35.0% | |
| GGATTTCTGACTATGCTATT+GGG | + | chr1_4:43707095-43707114 | Msa0164370:intron | 35.0% | |
| ! | GACTTCAGTTACTTTCATCT+TGG | + | chr1_4:43707240-43707259 | Msa0164370:intron | 35.0% |
| AGCTGATAATCTGTGTTTCA+AGG | + | chr1_4:43707285-43707304 | Msa0164370:CDS | 35.0% | |
| AAGCATATTTATGCACCTCA+TGG | + | chr1_4:43707381-43707400 | Msa0164370:intron | 35.0% | |
| ! | TTTTTGCTACAGGTTCTACA+TGG | + | chr1_4:43707827-43707846 | Msa0164370:intron | 35.0% |
| ! | CAGCAGCATTAAACATCTTT+TGG | - | chr1_4:43708227-43708246 | None:intergenic | 35.0% |
| TTGTGTTTGTTCATGAAGGT+TGG | + | chr1_4:43708462-43708481 | Msa0164370:intron | 35.0% | |
| ! | GGAATTTTGAACTTCATTGG+TGG | + | chr1_4:43708919-43708938 | Msa0164370:intron | 35.0% |
| ! | CTTCAATGATTTGTGTATGG+AGG | + | chr1_4:43709237-43709256 | Msa0164370:intron | 35.0% |
| CATATAGTTGAAGAACTGGT+AGG | - | chr1_4:43709280-43709299 | None:intergenic | 35.0% | |
| !! | CACTTTTAGGTCATTGCTTT+AGG | + | chr1_4:43709443-43709462 | Msa0164370:intron | 35.0% |
| TGCAAATCAGGACAAACTAA+TGG | + | chr1_4:43709480-43709499 | Msa0164370:intron | 35.0% | |
| ! | GCATAAGCAGCTAATTCTTT+TGG | + | chr1_4:43709592-43709611 | Msa0164370:intron | 35.0% |
| AGAGTAATCAGCCAAAGTAA+AGG | - | chr1_4:43709703-43709722 | None:intergenic | 35.0% | |
| CTACAAGTGATGGTTATTGA+GGG | + | chr1_4:43709724-43709743 | Msa0164370:intron | 35.0% | |
| CATGTCATACTAATCTGTGT+TGG | + | chr1_4:43709790-43709809 | Msa0164370:intron | 35.0% | |
| ! | AAAGCTTCATGACATGGTTT+TGG | + | chr1_4:43709815-43709834 | Msa0164370:intron | 35.0% |
| ! | CTTTAGGTTCCTTTGTTATG+TGG | + | chr1_4:43709849-43709868 | Msa0164370:intron | 35.0% |
| GAGTGAAATCCACATAACAA+AGG | - | chr1_4:43709861-43709880 | None:intergenic | 35.0% | |
| GTTATGTGGATTTCACTCTT+TGG | + | chr1_4:43709863-43709882 | Msa0164370:CDS | 35.0% | |
| ! | TGATTTTCGCAACTTCCTTA+TGG | + | chr1_4:43710040-43710059 | Msa0164370:intron | 35.0% |
| TTCTCTATAGGTCTGCTTTA+CGG | + | chr1_4:43710111-43710130 | Msa0164370:intron | 35.0% | |
| GTCGTAACGAATATTTGCAT+AGG | - | chr1_4:43710156-43710175 | None:intergenic | 35.0% | |
| !!! | CTTTCTTTTTCAGAATGCCT+AGG | + | chr1_4:43710534-43710553 | Msa0164370:CDS | 35.0% |
| TGTATCCTGCATATTGTTTC+AGG | + | chr1_4:43710661-43710680 | Msa0164370:intron | 35.0% | |
| GAAATTGTTCCATCATACCT+CGG | - | chr1_4:43710780-43710799 | None:intergenic | 35.0% | |
| !! | AATGAACTTGCTACATGCCA+TGG | + | chr1_4:43705436-43705455 | Msa0164370:five_prime_UTR | 40.0% |
| TACATGCCATGGTGAAATCA+AGG | + | chr1_4:43705447-43705466 | Msa0164370:five_prime_UTR | 40.0% | |
| TTACGACCTTGATTTCACCA+TGG | - | chr1_4:43705456-43705475 | None:intergenic | 40.0% | |
| ATGGTGAAATCAAGGTCGTA+AGG | + | chr1_4:43705455-43705474 | Msa0164370:five_prime_UTR | 40.0% | |
| TGGTGAAATCAAGGTCGTAA+GGG | + | chr1_4:43705456-43705475 | Msa0164370:five_prime_UTR | 40.0% | |
| GAAAGATAAGGCCATAGAAG+AGG | + | chr1_4:43705492-43705511 | Msa0164370:five_prime_UTR | 40.0% | |
| !! | GGCCATAGAAGAGGTATTAA+TGG | + | chr1_4:43705501-43705520 | Msa0164370:exon | 40.0% |
| ACTAAGCCACCATACTTACA+AGG | + | chr1_4:43705529-43705548 | Msa0164370:CDS | 40.0% | |
| TTTCAGATGGATCGTTCTAG+AGG | - | chr1_4:43706441-43706460 | None:intergenic | 40.0% | |
| ! | TAGAACGATCCATCTGAAAC+AGG | + | chr1_4:43706442-43706461 | Msa0164370:intron | 40.0% |
| GGCGTAAAAATAAGGAAGAC+AGG | - | chr1_4:43706577-43706596 | None:intergenic | 40.0% | |
| ATGGCAGACAGATGCATATA+AGG | - | chr1_4:43706834-43706853 | None:intergenic | 40.0% | |
| TAGTGATCCTATGATAGAGG+TGG | + | chr1_4:43707069-43707088 | Msa0164370:intron | 40.0% | |
| ATCCTATGATAGAGGTGGTT+TGG | + | chr1_4:43707074-43707093 | Msa0164370:intron | 40.0% | |
| ATCCAAACCACCTCTATCAT+AGG | - | chr1_4:43707079-43707098 | None:intergenic | 40.0% | |
| AGAATGACCTCACGAACAAT+TGG | - | chr1_4:43707186-43707205 | None:intergenic | 40.0% | |
| TGAGGTCATTCTCAAAGGTT+AGG | + | chr1_4:43707194-43707213 | Msa0164370:intron | 40.0% | |
| ! | TCAGTTACTTTCATCTTGGC+AGG | + | chr1_4:43707244-43707263 | Msa0164370:intron | 40.0% |
| ! | CAGTTACTTTCATCTTGGCA+GGG | + | chr1_4:43707245-43707264 | Msa0164370:intron | 40.0% |
| TTGCTACACTCACATACCTT+TGG | + | chr1_4:43707336-43707355 | Msa0164370:intron | 40.0% | |
| ATACCTTTGGATCACTTGCA+AGG | + | chr1_4:43707349-43707368 | Msa0164370:intron | 40.0% | |
| TATCCTTGCAAGTGATCCAA+AGG | - | chr1_4:43707355-43707374 | None:intergenic | 40.0% | |
| !!! | AAGGTTTTAAGGCAAGCAAC+TGG | - | chr1_4:43707592-43707611 | None:intergenic | 40.0% |
| TGGAACTGATATTGGGGAAA+AGG | - | chr1_4:43707611-43707630 | None:intergenic | 40.0% | |
| CTGTGTTGGAACTGATATTG+GGG | - | chr1_4:43707617-43707636 | None:intergenic | 40.0% | |
| GCTGTGTTGGAACTGATATT+GGG | - | chr1_4:43707618-43707637 | None:intergenic | 40.0% | |
| TGCTGTGTTGGAACTGATAT+TGG | - | chr1_4:43707619-43707638 | None:intergenic | 40.0% | |
| TATTTCCCTGATTGCTGTGT+TGG | - | chr1_4:43707631-43707650 | None:intergenic | 40.0% | |
| ! | CAACTTTCAGCTTTTTGTCG+TGG | + | chr1_4:43707780-43707799 | Msa0164370:intron | 40.0% |
| TGAACAAAAGGATGGATCAG+TGG | + | chr1_4:43707923-43707942 | Msa0164370:intron | 40.0% | |
| TTGTGCACACAGAACCAAAA+GGG | - | chr1_4:43708039-43708058 | None:intergenic | 40.0% | |
| CTGTGTCTGCTAATGACAAT+AGG | + | chr1_4:43708060-43708079 | Msa0164370:CDS | 40.0% | |
| GGCAAGCAGAGATAAAAACT+TGG | - | chr1_4:43708266-43708285 | None:intergenic | 40.0% | |
| ATCTTGCATGGTCCTGTTTA+AGG | + | chr1_4:43708764-43708783 | Msa0164370:intron | 40.0% | |
| ! | ACTTCATTGGTGGTTGAAGT+AGG | + | chr1_4:43708929-43708948 | Msa0164370:intron | 40.0% |
| GTGAGTCTTCACATACACTA+AGG | - | chr1_4:43709143-43709162 | None:intergenic | 40.0% | |
| ! | CTAGATGGCATTCACCTTTT+AGG | + | chr1_4:43709368-43709387 | Msa0164370:intron | 40.0% |
| ! | AACCATGCTGACTACCTAAA+AGG | - | chr1_4:43709385-43709404 | None:intergenic | 40.0% |
| GATTACTCTGCTACAAGTGA+TGG | + | chr1_4:43709714-43709733 | Msa0164370:intron | 40.0% | |
| GCTACAAGTGATGGTTATTG+AGG | + | chr1_4:43709723-43709742 | Msa0164370:intron | 40.0% | |
| TTGGTGAAAGCTTCATGACA+TGG | + | chr1_4:43709809-43709828 | Msa0164370:intron | 40.0% | |
| GAATATTTGCATAGGCAACG+CGG | - | chr1_4:43710148-43710167 | None:intergenic | 40.0% | |
| TGAGCTACTGATAGACATTG+AGG | + | chr1_4:43710479-43710498 | Msa0164370:CDS | 40.0% | |
| CTACTGATAGACATTGAGGT+AGG | + | chr1_4:43710483-43710502 | Msa0164370:CDS | 40.0% | |
| ATAGACATTGAGGTAGGACT+TGG | + | chr1_4:43710489-43710508 | Msa0164370:CDS | 40.0% | |
| GATATCTAAGTTCTCCAGCA+GGG | - | chr1_4:43710515-43710534 | None:intergenic | 40.0% | |
| AGATATCTAAGTTCTCCAGC+AGG | - | chr1_4:43710516-43710535 | None:intergenic | 40.0% | |
| !! | TTTTTCAGAATGCCTAGGCT+GGG | + | chr1_4:43710539-43710558 | Msa0164370:CDS | 40.0% |
| GCTTTACTCATGATGCTGAA+AGG | + | chr1_4:43710714-43710733 | Msa0164370:CDS | 40.0% | |
| AAATTGGAAATGCAAGGGAC+AGG | + | chr1_4:43710865-43710884 | Msa0164370:intron | 40.0% | |
| CGCTTATGGTGACATCATAA+GGG | - | chr1_4:43710910-43710929 | None:intergenic | 40.0% | |
| CCTTATGATGTCACCATAAG+CGG | + | chr1_4:43710908-43710927 | Msa0164370:CDS | 40.0% | |
| ! | TCTCAATCCTCGAGCTTTTA+AGG | - | chr1_4:43711004-43711023 | None:intergenic | 40.0% |
| CTTCAAATAGTCAGCCATTC+TGG | - | chr1_4:43711035-43711054 | None:intergenic | 40.0% | |
| ! | AATGGCTGACTATTTGAAGC+AGG | + | chr1_4:43711036-43711055 | Msa0164370:three_prime_UTR | 40.0% |
| ! | TATTTGAAGCAGGATGGCAA+AGG | + | chr1_4:43711046-43711065 | Msa0164370:three_prime_UTR | 40.0% |
| AAGCTTAATAGCAGCCTTAC+TGG | + | chr1_4:43711208-43711227 | Msa0164370:three_prime_UTR | 40.0% | |
| GAAGACAGGGAGGAATATCA+AGG | - | chr1_4:43706563-43706582 | None:intergenic | 45.0% | |
| GTTCGTGAGGTCATTCTCAA+AGG | + | chr1_4:43707189-43707208 | Msa0164370:intron | 45.0% | |
| ! | GCAGGGAGAACAAGCTTTAT+TGG | + | chr1_4:43707262-43707281 | Msa0164370:intron | 45.0% |
| AAGGCAAGCAACTGGTTACA+TGG | - | chr1_4:43707584-43707603 | None:intergenic | 45.0% | |
| TCAGTTCCAACACAGCAATC+AGG | + | chr1_4:43707622-43707641 | Msa0164370:intron | 45.0% | |
| CAGTTCCAACACAGCAATCA+GGG | + | chr1_4:43707623-43707642 | Msa0164370:intron | 45.0% | |
| CTCTTGCAATCGCTTCTAGA+TGG | - | chr1_4:43707676-43707695 | None:intergenic | 45.0% | |
| TTGCGTGCTGAACAAAAGGA+TGG | + | chr1_4:43707915-43707934 | Msa0164370:intron | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | + | chr1_4:43707926-43707945 | Msa0164370:intron | 45.0% | |
| !! | ACACAGGTTGGTGAACTTGA+TGG | + | chr1_4:43707957-43707976 | Msa0164370:CDS | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | + | chr1_4:43707961-43707980 | Msa0164370:CDS | 45.0% |
| AAGGCACGTTCGAAGAAACA+AGG | + | chr1_4:43707984-43708003 | Msa0164370:CDS | 45.0% | |
| AGGCACGTTCGAAGAAACAA+GGG | + | chr1_4:43707985-43708004 | Msa0164370:CDS | 45.0% | |
| GAAGAAACAAGGGAGGAAGA+GGG | + | chr1_4:43707995-43708014 | Msa0164370:CDS | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | + | chr1_4:43708012-43708031 | Msa0164370:CDS | 45.0% | |
| ! | TGTGGATTTGAGGACCCTTT+TGG | + | chr1_4:43708022-43708041 | Msa0164370:CDS | 45.0% |
| CTTGTGCACACAGAACCAAA+AGG | - | chr1_4:43708040-43708059 | None:intergenic | 45.0% | |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | + | chr1_4:43708110-43708129 | Msa0164370:CDS | 45.0% |
| AGGTGATGCATCACAGAGAA+TGG | + | chr1_4:43708130-43708149 | Msa0164370:CDS | 45.0% | |
| !! | AGGTGGTTTTTGCCACTTGA+AGG | + | chr1_4:43708850-43708869 | Msa0164370:intron | 45.0% |
| !! | TGGTTTTTGCCACTTGAAGG+TGG | + | chr1_4:43708853-43708872 | Msa0164370:intron | 45.0% |
| !! | CACCTTTTAGGTAGTCAGCA+TGG | + | chr1_4:43709380-43709399 | Msa0164370:intron | 45.0% |
| AAACAGCATCTCGTCTTTCG+CGG | + | chr1_4:43709889-43709908 | Msa0164370:CDS | 45.0% | |
| TCGCGGTTTCTTGGTAAAAC+AGG | + | chr1_4:43709906-43709925 | Msa0164370:CDS | 45.0% | |
| CGCGGTTTCTTGGTAAAACA+GGG | + | chr1_4:43709907-43709926 | Msa0164370:CDS | 45.0% | |
| !!! | CTTTTTCAGAATGCCTAGGC+TGG | + | chr1_4:43710538-43710557 | Msa0164370:CDS | 45.0% |
| AGCAGCCTGAAACAATATGC+AGG | - | chr1_4:43710669-43710688 | None:intergenic | 45.0% | |
| ! | CAGTCTTATAAGCGTGTACG+TGG | + | chr1_4:43710746-43710765 | Msa0164370:CDS | 45.0% |
| TATGGTGACATCATAAGGGC+TGG | - | chr1_4:43710906-43710925 | None:intergenic | 45.0% | |
| CCGCTTATGGTGACATCATA+AGG | - | chr1_4:43710911-43710930 | None:intergenic | 45.0% | |
| ATATCTGGCCTCACTAATCC+TGG | - | chr1_4:43710939-43710958 | None:intergenic | 45.0% | |
| GCCAGATATCATGCATGAGA+GGG | + | chr1_4:43710950-43710969 | Msa0164370:exon | 45.0% | |
| TCCCTCTCATGCATGATATC+TGG | - | chr1_4:43710954-43710973 | None:intergenic | 45.0% | |
| !! | CGAGCTTTTAAGGATCTCTG+AGG | - | chr1_4:43710994-43711013 | None:intergenic | 45.0% |
| CAGAGATCCTTAAAAGCTCG+AGG | + | chr1_4:43710994-43711013 | Msa0164370:three_prime_UTR | 45.0% | |
| TTGAGATTCCAGAGCCAGAA+TGG | + | chr1_4:43711018-43711037 | Msa0164370:three_prime_UTR | 45.0% | |
| ! | GCTGACTATTTGAAGCAGGA+TGG | + | chr1_4:43711040-43711059 | Msa0164370:three_prime_UTR | 45.0% |
| !! | AAAAAAAAAATATTGAAATA+TGG | - | chr1_4:43708521-43708540 | None:intergenic | 5.0% |
| !!! | CAATATTTTTTTTTTATTTA+TGG | + | chr1_4:43708526-43708545 | Msa0164370:intron | 5.0% |
| GGTAAGGCCAATTGTTCGTG+AGG | + | chr1_4:43707176-43707195 | Msa0164370:intron | 50.0% | |
| CAGGTTCTACATGGTGCATC+TGG | + | chr1_4:43707836-43707855 | Msa0164370:intron | 50.0% | |
| GTCGTTGCGTGCTGAACAAA+AGG | + | chr1_4:43707911-43707930 | Msa0164370:intron | 50.0% | |
| ! | AGTGGTGGAGAGTAGAACAC+AGG | + | chr1_4:43707941-43707960 | Msa0164370:CDS | 50.0% |
| GTGGAGAGTAGAACACAGGT+TGG | + | chr1_4:43707945-43707964 | Msa0164370:CDS | 50.0% | |
| !! | CAGGTTGGTGAACTTGATGG+AGG | + | chr1_4:43707960-43707979 | Msa0164370:CDS | 50.0% |
| TGGTGAACTTGATGGAGGGA+AGG | + | chr1_4:43707965-43707984 | Msa0164370:CDS | 50.0% | |
| CACGTTCGAAGAAACAAGGG+AGG | + | chr1_4:43707988-43708007 | Msa0164370:CDS | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | + | chr1_4:43707994-43708013 | Msa0164370:CDS | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | - | chr1_4:43708128-43708147 | None:intergenic | 50.0% | |
| ATGCGATTGAAGCGCATGGT+TGG | + | chr1_4:43708168-43708187 | Msa0164370:CDS | 50.0% | |
| TGCGATTGAAGCGCATGGTT+GGG | + | chr1_4:43708169-43708188 | Msa0164370:CDS | 50.0% | |
| TCCTTGAGACCACCTTCAAG+TGG | - | chr1_4:43708865-43708884 | None:intergenic | 50.0% | |
| TGAAGGTGGTCTCAAGGACA+AGG | + | chr1_4:43708867-43708886 | Msa0164370:intron | 50.0% | |
| GCTTATGCCCTCTACAACCA+AGG | - | chr1_4:43709580-43709599 | None:intergenic | 50.0% | |
| TCTCGTCTTTCGCGGTTTCT+TGG | + | chr1_4:43709897-43709916 | Msa0164370:CDS | 50.0% | |
| ACCTCCTCTTCTTCTCCAGA+TGG | + | chr1_4:43709965-43709984 | Msa0164370:CDS | 50.0% | |
| ACCATCTGGAGAAGAAGAGG+AGG | - | chr1_4:43709969-43709988 | None:intergenic | 50.0% | |
| CGAACCATCTGGAGAAGAAG+AGG | - | chr1_4:43709972-43709991 | None:intergenic | 50.0% | |
| !! | CTTTGGAGTCACGAACCATC+TGG | - | chr1_4:43709983-43710002 | None:intergenic | 50.0% |
| ATAGGCAACGCGGAGTTTGA+AGG | - | chr1_4:43710138-43710157 | None:intergenic | 50.0% | |
| TACCAGGAAATACCCAGCCT+AGG | - | chr1_4:43710554-43710573 | None:intergenic | 50.0% | |
| GGCTGGGTATTTCCTGGTAT+TGG | + | chr1_4:43710555-43710574 | Msa0164370:CDS | 50.0% | |
| CTTATAAGCGTGTACGTGGC+AGG | + | chr1_4:43710750-43710769 | Msa0164370:CDS | 50.0% | |
| AATCCTGGACTCACCGCTTA+TGG | - | chr1_4:43710924-43710943 | None:intergenic | 50.0% | |
| GGCCAGATATCATGCATGAG+AGG | + | chr1_4:43710949-43710968 | Msa0164370:exon | 50.0% | |
| !! | ATAGTCAGCCATTCTGGCTC+TGG | - | chr1_4:43711029-43711048 | None:intergenic | 50.0% |
| AGGGAGGAAGAGGGATGTTG+TGG | + | chr1_4:43708004-43708023 | Msa0164370:CDS | 55.0% | |
| GCGAATGCGATTGAAGCGCA+TGG | + | chr1_4:43708164-43708183 | Msa0164370:CDS | 55.0% | |
| GCGATTGAAGCGCATGGTTG+GGG | + | chr1_4:43708170-43708189 | Msa0164370:CDS | 55.0% | |
| GCCACTTGAAGGTGGTCTCA+AGG | + | chr1_4:43708861-43708880 | Msa0164370:intron | 55.0% | |
| CTACCAGCCAACAAGCTTGC+AGG | + | chr1_4:43709515-43709534 | Msa0164370:intron | 55.0% | |
| !! | AGTCCTGCAAGCTTGTTGGC+TGG | - | chr1_4:43709521-43709540 | None:intergenic | 55.0% |
| AGCCAACAAGCTTGCAGGAC+TGG | + | chr1_4:43709520-43709539 | Msa0164370:intron | 55.0% | |
| CTCCAGTCCTGCAAGCTTGT+TGG | - | chr1_4:43709525-43709544 | None:intergenic | 55.0% | |
| TGCCCTCTACAACCAAGGTG+CGG | - | chr1_4:43709575-43709594 | None:intergenic | 55.0% | |
| TGCCTAGGCTGGGTATTTCC+TGG | + | chr1_4:43710549-43710568 | Msa0164370:CDS | 55.0% | |
| ! | GCAGGTTGACCGAGGTATGA+TGG | + | chr1_4:43710768-43710787 | Msa0164370:intron | 55.0% |
| ! | ATAAGGGCTGGTGCACCTAC+TGG | - | chr1_4:43710894-43710913 | None:intergenic | 55.0% |
| TCACCATAAGCGGTGAGTCC+AGG | + | chr1_4:43710918-43710937 | Msa0164370:CDS | 55.0% | |
| ! | CGGTGAGTCCAGGATTAGTG+AGG | + | chr1_4:43710928-43710947 | Msa0164370:CDS | 55.0% |
| TTGAAGCGCATGGTTGGGGC+TGG | + | chr1_4:43708174-43708193 | Msa0164370:CDS | 60.0% | |
| ACGTCTGTAACGCCGCACCT+TGG | + | chr1_4:43709560-43709579 | Msa0164370:intron | 60.0% | |
| ACGCCGCACCTTGGTTGTAG+AGG | + | chr1_4:43709569-43709588 | Msa0164370:intron | 60.0% | |
| CGCCGCACCTTGGTTGTAGA+GGG | + | chr1_4:43709570-43709589 | Msa0164370:intron | 60.0% | |
| ! | TGTACGTGGCAGGTTGACCG+AGG | + | chr1_4:43710760-43710779 | Msa0164370:CDS | 60.0% |
| GCAAGGGACAGGCTTCCAGT+AGG | + | chr1_4:43710876-43710895 | Msa0164370:intron | 60.0% | |
| GAGGTAGGACTTGGCCCTGC+TGG | + | chr1_4:43710498-43710517 | Msa0164370:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 43705408 | 43711273 | 43705408 | ID=Msa0164370;Name=Msa0164370 |
| chr1_4 | mRNA | 43705408 | 43711273 | 43705408 | ID=Msa0164370-mRNA-1;Parent=Msa0164370;Name=Msa0164370-mRNA-1;_AED=0.29;_eAED=0.43;_QI=112|0.12|0.44|0.88|1|1|9|306|343 |
| chr1_4 | exon | 43705408 | 43705550 | 43705408 | ID=Msa0164370-mRNA-1:exon:12517;Parent=Msa0164370-mRNA-1 |
| chr1_4 | exon | 43706242 | 43706355 | 43706242 | ID=Msa0164370-mRNA-1:exon:12518;Parent=Msa0164370-mRNA-1 |
| chr1_4 | exon | 43707266 | 43707312 | 43707266 | ID=Msa0164370-mRNA-1:exon:12519;Parent=Msa0164370-mRNA-1 |
| chr1_4 | exon | 43707933 | 43708232 | 43707933 | ID=Msa0164370-mRNA-1:exon:12520;Parent=Msa0164370-mRNA-1 |
| chr1_4 | exon | 43708658 | 43708714 | 43708658 | ID=Msa0164370-mRNA-1:exon:12521;Parent=Msa0164370-mRNA-1 |
| chr1_4 | exon | 43709855 | 43709986 | 43709855 | ID=Msa0164370-mRNA-1:exon:12522;Parent=Msa0164370-mRNA-1 |
| chr1_4 | exon | 43710423 | 43710587 | 43710423 | ID=Msa0164370-mRNA-1:exon:12523;Parent=Msa0164370-mRNA-1 |
| chr1_4 | exon | 43710683 | 43710781 | 43710683 | ID=Msa0164370-mRNA-1:exon:12524;Parent=Msa0164370-mRNA-1 |
| chr1_4 | exon | 43710881 | 43711273 | 43710881 | ID=Msa0164370-mRNA-1:exon:12525;Parent=Msa0164370-mRNA-1 |
| chr1_4 | five_prime_UTR | 43705408 | 43705519 | 43705408 | ID=Msa0164370-mRNA-1:five_prime_utr;Parent=Msa0164370-mRNA-1 |
| chr1_4 | CDS | 43705520 | 43705550 | 43705520 | ID=Msa0164370-mRNA-1:cds;Parent=Msa0164370-mRNA-1 |
| chr1_4 | CDS | 43706242 | 43706355 | 43706242 | ID=Msa0164370-mRNA-1:cds;Parent=Msa0164370-mRNA-1 |
| chr1_4 | CDS | 43707266 | 43707312 | 43707266 | ID=Msa0164370-mRNA-1:cds;Parent=Msa0164370-mRNA-1 |
| chr1_4 | CDS | 43707933 | 43708232 | 43707933 | ID=Msa0164370-mRNA-1:cds;Parent=Msa0164370-mRNA-1 |
| chr1_4 | CDS | 43708658 | 43708714 | 43708658 | ID=Msa0164370-mRNA-1:cds;Parent=Msa0164370-mRNA-1 |
| chr1_4 | CDS | 43709855 | 43709986 | 43709855 | ID=Msa0164370-mRNA-1:cds;Parent=Msa0164370-mRNA-1 |
| chr1_4 | CDS | 43710423 | 43710587 | 43710423 | ID=Msa0164370-mRNA-1:cds;Parent=Msa0164370-mRNA-1 |
| chr1_4 | CDS | 43710683 | 43710781 | 43710683 | ID=Msa0164370-mRNA-1:cds;Parent=Msa0164370-mRNA-1 |
| chr1_4 | CDS | 43710881 | 43710967 | 43710881 | ID=Msa0164370-mRNA-1:cds;Parent=Msa0164370-mRNA-1 |
| chr1_4 | three_prime_UTR | 43710968 | 43711273 | 43710968 | ID=Msa0164370-mRNA-1:three_prime_utr;Parent=Msa0164370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
