Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008840 | Msa0053700 | 0.805339 | 1.399896e-49 | -8.615850e-47 |
| Msa0033880 | Msa0053700 | 0.806779 | 6.969651e-50 | -8.615850e-47 |
| Msa0047280 | Msa0053700 | 0.827475 | 1.532936e-54 | -8.615850e-47 |
| Msa0053690 | Msa0053700 | 0.835905 | 1.278400e-56 | -8.615850e-47 |
| Msa0053700 | Msa0065010 | 0.800890 | 1.165419e-48 | -8.615850e-47 |
| Msa0053700 | Msa0070430 | 0.812251 | 4.657649e-51 | -8.615850e-47 |
| Msa0053700 | Msa0077540 | 0.801453 | 8.942014e-49 | -8.615850e-47 |
| Msa0053700 | Msa0101180 | 0.805242 | 1.467255e-49 | -8.615850e-47 |
| Msa0053700 | Msa0127040 | 0.806554 | 7.775301e-50 | -8.615850e-47 |
| Msa0053700 | Msa0127850 | 0.807168 | 5.767425e-50 | -8.615850e-47 |
| Msa0053700 | Msa0139990 | 0.825881 | 3.680503e-54 | -8.615850e-47 |
| Msa0053700 | Msa0146080 | 0.802651 | 5.071133e-49 | -8.615850e-47 |
| Msa0053700 | Msa0155330 | 0.802322 | 5.927580e-49 | -8.615850e-47 |
| Msa0053700 | Msa0161410 | 0.800057 | 1.722638e-48 | -8.615850e-47 |
| Msa0053700 | Msa0164370 | 0.896493 | 3.500491e-76 | -8.615850e-47 |
| Msa0053700 | Msa0171850 | 0.800980 | 1.117213e-48 | -8.615850e-47 |
| Msa0053700 | Msa0174000 | 0.820508 | 6.609668e-53 | -8.615850e-47 |
| Msa0053700 | Msa0193600 | 0.846299 | 2.370032e-59 | -8.615850e-47 |
| Msa0053700 | Msa0194560 | 0.815217 | 1.034991e-51 | -8.615850e-47 |
| Msa0053700 | Msa0251770 | 0.810441 | 1.150996e-50 | -8.615850e-47 |
| Msa0053700 | Msa0273650 | 0.845038 | 5.208930e-59 | -8.615850e-47 |
| Msa0053700 | Msa0310410 | 0.800463 | 1.424504e-48 | -8.615850e-47 |
| Msa0053700 | Msa0313930 | 0.813186 | 2.907139e-51 | -8.615850e-47 |
| Msa0053700 | Msa0319330 | 0.804307 | 2.299746e-49 | -8.615850e-47 |
| Msa0053700 | Msa0322590 | 0.807136 | 5.856075e-50 | -8.615850e-47 |
| Msa0053700 | Msa0337500 | 0.819519 | 1.112778e-52 | -8.615850e-47 |
| Msa0053700 | Msa0337510 | 0.946223 | 6.955655e-105 | -8.615850e-47 |
| Msa0053700 | Msa0364990 | 0.887940 | 9.172885e-73 | -8.615850e-47 |
| Msa0053700 | Msa0387880 | -0.801992 | 6.928815e-49 | -8.615850e-47 |
| Msa0053700 | Msa0414020 | 0.903464 | 3.376965e-79 | -8.615850e-47 |
| Msa0053700 | Msa0431770 | 0.879278 | 1.420163e-69 | -8.615850e-47 |
| Msa0053700 | Msa0436200 | 0.803722 | 3.044210e-49 | -8.615850e-47 |
| Msa0053700 | Msa0442310 | 0.802153 | 6.422058e-49 | -8.615850e-47 |
| Msa0053700 | Msa0458640 | 0.825291 | 5.079562e-54 | -8.615850e-47 |
| Msa0053700 | Msa0459700 | 0.803975 | 2.696323e-49 | -8.615850e-47 |
| Msa0053700 | Msa0484290 | 0.800022 | 1.751715e-48 | -8.615850e-47 |
| Msa0053700 | Msa0487780 | 0.803385 | 3.574935e-49 | -8.615850e-47 |
| Msa0053700 | Msa0510290 | 0.813568 | 2.396156e-51 | -8.615850e-47 |
| Msa0053700 | Msa0518960 | 0.801540 | 8.582491e-49 | -8.615850e-47 |
| Msa0053700 | Msa0534080 | 0.807560 | 4.762238e-50 | -8.615850e-47 |
| Msa0053700 | Msa0539060 | 0.801233 | 9.915877e-49 | -8.615850e-47 |
| Msa0053700 | Msa0576730 | 0.816488 | 5.390547e-52 | -8.615850e-47 |
| Msa0053700 | Msa0578090 | 0.803136 | 4.025371e-49 | -8.615850e-47 |
| Msa0053700 | Msa0609220 | 0.805446 | 1.329925e-49 | -8.615850e-47 |
| Msa0053700 | Msa0645170 | 0.823881 | 1.091084e-53 | -8.615850e-47 |
| Msa0053700 | Msa0647430 | 0.802807 | 4.709314e-49 | -8.615850e-47 |
| Msa0053700 | Msa0659990 | 0.806627 | 7.505921e-50 | -8.615850e-47 |
| Msa0053700 | Msa0687230 | 0.815304 | 9.903298e-52 | -8.615850e-47 |
| Msa0053700 | Msa0702150 | 0.803984 | 2.685619e-49 | -8.615850e-47 |
| Msa0053700 | Msa0702270 | 0.822147 | 2.767388e-53 | -8.615850e-47 |
| Msa0053700 | Msa0702670 | 0.800398 | 1.468391e-48 | -8.615850e-47 |
| Msa0053700 | Msa0705390 | 0.819780 | 9.703826e-53 | -8.615850e-47 |
| Msa0053700 | Msa0747170 | 0.804490 | 2.106995e-49 | -8.615850e-47 |
| Msa0053700 | Msa0758130 | 0.805648 | 1.206339e-49 | -8.615850e-47 |
| Msa0053700 | Msa0764690 | 0.802927 | 4.447566e-49 | -8.615850e-47 |
| Msa0053700 | Msa0795660 | 0.806757 | 7.044906e-50 | -8.615850e-47 |
| Msa0053700 | Msa0798090 | 0.859232 | 4.768321e-63 | -8.615850e-47 |
| Msa0053700 | Msa0799480 | 0.842390 | 2.663371e-58 | -8.615850e-47 |
| Msa0053700 | Msa0822170 | 0.801533 | 8.608537e-49 | -8.615850e-47 |
| Msa0053700 | Msa0832820 | 0.800680 | 1.286185e-48 | -8.615850e-47 |
| Msa0053700 | Msa0869010 | 0.824020 | 1.012215e-53 | -8.615850e-47 |
| Msa0053700 | Msa0888940 | 0.835898 | 1.283357e-56 | -8.615850e-47 |
| Msa0053700 | Msa0898760 | 0.808761 | 2.642001e-50 | -8.615850e-47 |
| Msa0053700 | Msa0901110 | 0.808226 | 3.437640e-50 | -8.615850e-47 |
| Msa0053700 | Msa0903780 | 0.807095 | 5.976278e-50 | -8.615850e-47 |
| Msa0053700 | Msa0928120 | 0.836735 | 7.863235e-57 | -8.615850e-47 |
| Msa0053700 | Msa0943170 | 0.816339 | 5.818531e-52 | -8.615850e-47 |
| Msa0053700 | Msa0943270 | 0.809830 | 1.558678e-50 | -8.615850e-47 |
| Msa0053700 | Msa0944660 | 0.805675 | 1.190661e-49 | -8.615850e-47 |
| Msa0053700 | Msa0963020 | 0.802127 | 6.500730e-49 | -8.615850e-47 |
| Msa0053700 | Msa0980940 | 0.836640 | 8.311796e-57 | -8.615850e-47 |
| Msa0053700 | Msa0990830 | 0.811978 | 5.341779e-51 | -8.615850e-47 |
| Msa0053700 | Msa1004420 | 0.844287 | 8.302235e-59 | -8.615850e-47 |
| Msa0053700 | Msa1020100 | 0.814964 | 1.178095e-51 | -8.615850e-47 |
| Msa0053700 | Msa1025940 | 0.806729 | 7.141381e-50 | -8.615850e-47 |
| Msa0053700 | Msa1036740 | 0.807903 | 4.026069e-50 | -8.615850e-47 |
| Msa0053700 | Msa1059310 | 0.819403 | 1.182773e-52 | -8.615850e-47 |
| Msa0053700 | Msa1067070 | 0.867849 | 1.010420e-65 | -8.615850e-47 |
| Msa0053700 | Msa1070390 | 0.809862 | 1.533982e-50 | -8.615850e-47 |
| Msa0053700 | Msa1071530 | 0.816273 | 6.020092e-52 | -8.615850e-47 |
| Msa0053700 | Msa1113590 | 0.802928 | 4.445639e-49 | -8.615850e-47 |
| Msa0053700 | Msa1123350 | 0.804738 | 1.870121e-49 | -8.615850e-47 |
| Msa0053700 | Msa1154490 | 0.829806 | 4.189972e-55 | -8.615850e-47 |
| Msa0053700 | Msa1163870 | 0.801587 | 8.392197e-49 | -8.615850e-47 |
| Msa0053700 | Msa1201810 | 0.802904 | 4.495658e-49 | -8.615850e-47 |
| Msa0053700 | Msa1201830 | 0.804568 | 2.029473e-49 | -8.615850e-47 |
| Msa0053700 | Msa1202580 | 0.802426 | 5.643388e-49 | -8.615850e-47 |
| Msa0053700 | Msa1205480 | 0.803471 | 3.430748e-49 | -8.615850e-47 |
| Msa0053700 | Msa1206650 | 0.800174 | 1.631068e-48 | -8.615850e-47 |
| Msa0053700 | Msa1211830 | 0.801371 | 9.291163e-49 | -8.615850e-47 |
| Msa0053700 | Msa1253400 | 0.885245 | 9.604400e-72 | -8.615850e-47 |
| Msa0053700 | Msa1253810 | 0.837476 | 5.084107e-57 | -8.615850e-47 |
| Msa0053700 | Msa1279590 | 0.885807 | 5.913455e-72 | -8.615850e-47 |
| Msa0053700 | Msa1289300 | 0.889325 | 2.680183e-73 | -8.615850e-47 |
| Msa0053700 | Msa1297600 | 0.903067 | 5.086390e-79 | -8.615850e-47 |
| Msa0053700 | Msa1320580 | 0.805944 | 1.045032e-49 | -8.615850e-47 |
| Msa0053700 | Msa1323990 | 0.842285 | 2.839734e-58 | -8.615850e-47 |
| Msa0053700 | Msa1325930 | 0.815011 | 1.150387e-51 | -8.615850e-47 |
| Msa0053700 | Msa1377800 | 0.808375 | 3.194236e-50 | -8.615850e-47 |
| Msa0053700 | Msa1381650 | 0.809593 | 1.752404e-50 | -8.615850e-47 |
| Msa0053700 | Msa1397940 | 0.825518 | 4.486907e-54 | -8.615850e-47 |
| Msa0053700 | Msa1411950 | 0.809161 | 2.169284e-50 | -8.615850e-47 |
| Msa0053700 | Msa1424780 | 0.812920 | 3.326167e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053700 | MtrunA17_Chr2g0328391 | 45.361 | 97 | 6 | 1 | 1 | 50 | 253 | 349 | 1.48e-15 | 69.3 |
| Msa0053700 | MtrunA17_Chr4g0073551 | 88.889 | 27 | 3 | 0 | 47 | 73 | 121 | 147 | 9.65e-12 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 13 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGACTATGACAATGTAAT+TGG | 0.287106 | 1_2:-8207038 | Msa0053700:CDS |
| TTTCTGCTTACTTTCAGATA+TGG | 0.359746 | 1_2:+8207008 | None:intergenic |
| ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 1_2:-8207754 | Msa0053700:CDS |
| AGGTGATGCATCACAGAGAA+TGG | 0.535230 | 1_2:-8207581 | Msa0053700:CDS |
| GTCGTTGCGTGCTGAACAAA+AGG | 0.535793 | 1_2:-8207800 | Msa0053700:CDS |
| TTGCGTGCTGAACAAAAGGA+TGG | 0.589695 | 1_2:-8207796 | Msa0053700:CDS |
| GAATGCGATTGAAGCGCGCA+TGG | 0.609128 | 1_2:-8207545 | Msa0053700:intron |
| CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 1_2:-8207751 | Msa0053700:CDS |
| ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 1_2:-8207785 | Msa0053700:CDS |
| AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 1_2:-8207750 | Msa0053700:CDS |
| AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 1_2:-8207770 | Msa0053700:CDS |
| TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 1_2:-8207788 | Msa0053700:CDS |
| GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 1_2:-8207766 | Msa0053700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATTATAATGTAAAATAAG+TGG | - | chr1_2:8207466-8207485 | Msa0053700:intron | 15.0% |
| !!! | ATATATGTTGTTTTGTAAAT+AGG | - | chr1_2:8208586-8208605 | Msa0053700:intron | 15.0% |
| !! | TGATTATAATGTAAAATAAG+TGG | - | chr1_2:8207466-8207485 | Msa0053700:intron | 15.0% |
| !!! | ATATATGTTGTTTTGTAAAT+AGG | - | chr1_2:8208586-8208605 | Msa0053700:intron | 15.0% |
| !! | TATCTATGATTGTAAATTTG+TGG | - | chr1_2:8207187-8207206 | Msa0053700:intron | 20.0% |
| !!! | ATTTTTGAAAAACTAGCAAT+TGG | - | chr1_2:8207551-8207570 | Msa0053700:CDS | 20.0% |
| !! | CATATATAATATTTGTGTAC+TGG | + | chr1_2:8208236-8208255 | None:intergenic | 20.0% |
| !!! | AATGTGCAAATTTTTTGAAA+GGG | + | chr1_2:8208321-8208340 | None:intergenic | 20.0% |
| !!! | AAATGTGCAAATTTTTTGAA+AGG | + | chr1_2:8208322-8208341 | None:intergenic | 20.0% |
| !!! | TTTAAAAAACATGGCAATTT+TGG | + | chr1_2:8208414-8208433 | None:intergenic | 20.0% |
| !!! | ACATACATCTTTAAAAAACA+TGG | + | chr1_2:8208423-8208442 | None:intergenic | 20.0% |
| !!! | GTTTTTTAAAGATGTATGTT+TGG | - | chr1_2:8208424-8208443 | Msa0053700:intron | 20.0% |
| !! | TATCTATGATTGTAAATTTG+TGG | - | chr1_2:8207187-8207206 | Msa0053700:intron | 20.0% |
| !!! | ATTTTTGAAAAACTAGCAAT+TGG | - | chr1_2:8207551-8207570 | Msa0053700:CDS | 20.0% |
| !! | CATATATAATATTTGTGTAC+TGG | + | chr1_2:8208236-8208255 | None:intergenic | 20.0% |
| !!! | AATGTGCAAATTTTTTGAAA+GGG | + | chr1_2:8208321-8208340 | None:intergenic | 20.0% |
| !!! | AAATGTGCAAATTTTTTGAA+AGG | + | chr1_2:8208322-8208341 | None:intergenic | 20.0% |
| !!! | TTTAAAAAACATGGCAATTT+TGG | + | chr1_2:8208414-8208433 | None:intergenic | 20.0% |
| !!! | ACATACATCTTTAAAAAACA+TGG | + | chr1_2:8208423-8208442 | None:intergenic | 20.0% |
| !!! | GTTTTTTAAAGATGTATGTT+TGG | - | chr1_2:8208424-8208443 | Msa0053700:intron | 20.0% |
| ! | AAACTGAAAAAGATTTGAGT+AGG | - | chr1_2:8207037-8207056 | Msa0053700:CDS | 25.0% |
| ! | ATGATTGTAAATTTGTGGTA+AGG | - | chr1_2:8207192-8207211 | Msa0053700:intron | 25.0% |
| ! | TATGTAATATTTAAGCCATG+AGG | + | chr1_2:8207431-8207450 | None:intergenic | 25.0% |
| !! | TTTTTGCCTAATCTTTCTAA+TGG | - | chr1_2:8207511-8207530 | Msa0053700:intron | 25.0% |
| ! | AATTCTCCATTAGAAAGATT+AGG | + | chr1_2:8207520-8207539 | None:intergenic | 25.0% |
| ! | TTGAAATTTATTGTGTGATC+TGG | - | chr1_2:8207736-8207755 | Msa0053700:intron | 25.0% |
| !!! | CATAAAATGTTTTTTGCTAC+AGG | - | chr1_2:8207849-8207868 | Msa0053700:intron | 25.0% |
| ! | GTACAGAAATTTGAATTCAT+TGG | - | chr1_2:8207894-8207913 | Msa0053700:intron | 25.0% |
| !! | TTTTCTTTTTGTAAGTTGCA+TGG | + | chr1_2:8207920-8207939 | None:intergenic | 25.0% |
| ! | TTAAAGATGTATGTTTGGAT+TGG | - | chr1_2:8208429-8208448 | Msa0053700:intron | 25.0% |
| ! | ATAATTGTGTTTGTTCATGA+AGG | - | chr1_2:8208492-8208511 | Msa0053700:intron | 25.0% |
| ! | TAGGAAACTTCTATTTGATT+AGG | - | chr1_2:8208605-8208624 | Msa0053700:intron | 25.0% |
| ! | GTTAGAGATGAGAAAATTAA+GGG | + | chr1_2:8208648-8208667 | None:intergenic | 25.0% |
| ! | AGTTAGAGATGAGAAAATTA+AGG | + | chr1_2:8208649-8208668 | None:intergenic | 25.0% |
| !!! | TCTCTAACTTTTGTTTATTG+TGG | - | chr1_2:8208660-8208679 | Msa0053700:intron | 25.0% |
| ! | AAACTGAAAAAGATTTGAGT+AGG | - | chr1_2:8207037-8207056 | Msa0053700:CDS | 25.0% |
| ! | ATGATTGTAAATTTGTGGTA+AGG | - | chr1_2:8207192-8207211 | Msa0053700:intron | 25.0% |
| ! | TATGTAATATTTAAGCCATG+AGG | + | chr1_2:8207431-8207450 | None:intergenic | 25.0% |
| !! | TTTTTGCCTAATCTTTCTAA+TGG | - | chr1_2:8207511-8207530 | Msa0053700:intron | 25.0% |
| ! | AATTCTCCATTAGAAAGATT+AGG | + | chr1_2:8207520-8207539 | None:intergenic | 25.0% |
| ! | TTGAAATTTATTGTGTGATC+TGG | - | chr1_2:8207736-8207755 | Msa0053700:intron | 25.0% |
| !!! | CATAAAATGTTTTTTGCTAC+AGG | - | chr1_2:8207849-8207868 | Msa0053700:intron | 25.0% |
| ! | GTACAGAAATTTGAATTCAT+TGG | - | chr1_2:8207894-8207913 | Msa0053700:intron | 25.0% |
| !! | TTTTCTTTTTGTAAGTTGCA+TGG | + | chr1_2:8207920-8207939 | None:intergenic | 25.0% |
| ! | TTAAAGATGTATGTTTGGAT+TGG | - | chr1_2:8208429-8208448 | Msa0053700:intron | 25.0% |
| ! | ATAATTGTGTTTGTTCATGA+AGG | - | chr1_2:8208492-8208511 | Msa0053700:intron | 25.0% |
| ! | TAGGAAACTTCTATTTGATT+AGG | - | chr1_2:8208605-8208624 | Msa0053700:intron | 25.0% |
| ! | GTTAGAGATGAGAAAATTAA+GGG | + | chr1_2:8208648-8208667 | None:intergenic | 25.0% |
| ! | AGTTAGAGATGAGAAAATTA+AGG | + | chr1_2:8208649-8208668 | None:intergenic | 25.0% |
| !!! | TCTCTAACTTTTGTTTATTG+TGG | - | chr1_2:8208660-8208679 | Msa0053700:intron | 25.0% |
| ! | AACTGAGCATTTAAAATCTC+TGG | + | chr1_2:8207167-8207186 | None:intergenic | 30.0% |
| ! | GTTAGGTTTTTCTGTGAAAT+TGG | - | chr1_2:8207243-8207262 | Msa0053700:intron | 30.0% |
| ! | ATATTGGGGAAAAGGTTTTA+AGG | + | chr1_2:8207635-8207654 | None:intergenic | 30.0% |
| GGAAATAATTCTCAATGCAA+TGG | - | chr1_2:8207676-8207695 | Msa0053700:intron | 30.0% | |
| AATTCTCAATGCAATGGTTA+TGG | - | chr1_2:8207682-8207701 | Msa0053700:intron | 30.0% | |
| ATGAATTGTTGAAGCAGAAT+AGG | - | chr1_2:8208122-8208141 | Msa0053700:intron | 30.0% | |
| ! | GAGTGTTTAGATTTGTTTGT+AGG | - | chr1_2:8208456-8208475 | Msa0053700:intron | 30.0% |
| !! | AAGCTAAGTTGATGTATCAT+AGG | + | chr1_2:8208532-8208551 | None:intergenic | 30.0% |
| AGTGACTATGACAATGTAAT+TGG | - | chr1_2:8208705-8208724 | Msa0053700:intron | 30.0% | |
| TTTCTGCTTACTTTCAGATA+TGG | + | chr1_2:8208738-8208757 | None:intergenic | 30.0% | |
| ! | AACTGAGCATTTAAAATCTC+TGG | + | chr1_2:8207167-8207186 | None:intergenic | 30.0% |
| ! | GTTAGGTTTTTCTGTGAAAT+TGG | - | chr1_2:8207243-8207262 | Msa0053700:intron | 30.0% |
| ! | ATATTGGGGAAAAGGTTTTA+AGG | + | chr1_2:8207635-8207654 | None:intergenic | 30.0% |
| GGAAATAATTCTCAATGCAA+TGG | - | chr1_2:8207676-8207695 | Msa0053700:intron | 30.0% | |
| AATTCTCAATGCAATGGTTA+TGG | - | chr1_2:8207682-8207701 | Msa0053700:intron | 30.0% | |
| ATGAATTGTTGAAGCAGAAT+AGG | - | chr1_2:8208122-8208141 | Msa0053700:intron | 30.0% | |
| ! | GAGTGTTTAGATTTGTTTGT+AGG | - | chr1_2:8208456-8208475 | Msa0053700:intron | 30.0% |
| !! | AAGCTAAGTTGATGTATCAT+AGG | + | chr1_2:8208532-8208551 | None:intergenic | 30.0% |
| AGTGACTATGACAATGTAAT+TGG | - | chr1_2:8208705-8208724 | Msa0053700:intron | 30.0% | |
| TTTCTGCTTACTTTCAGATA+TGG | + | chr1_2:8208738-8208757 | None:intergenic | 30.0% | |
| AGATAGTGATCCTATGATAG+AGG | - | chr1_2:8207098-8207117 | Msa0053700:intron | 35.0% | |
| TGGATTTCTGACTATGCTAT+TGG | - | chr1_2:8207126-8207145 | Msa0053700:intron | 35.0% | |
| GGATTTCTGACTATGCTATT+GGG | - | chr1_2:8207127-8207146 | Msa0053700:intron | 35.0% | |
| AAATTTGTGGTAAGGCCAAT+TGG | - | chr1_2:8207200-8207219 | Msa0053700:intron | 35.0% | |
| ! | GACTTCAGTTACTTTCATCT+TGG | - | chr1_2:8207272-8207291 | Msa0053700:intron | 35.0% |
| AGCTGATAATCTGTGTTTCA+AGG | - | chr1_2:8207317-8207336 | Msa0053700:intron | 35.0% | |
| AAGCATATTTATGCACCTCA+TGG | - | chr1_2:8207413-8207432 | Msa0053700:intron | 35.0% | |
| TGGAATTGATATTGGGGAAA+AGG | + | chr1_2:8207643-8207662 | None:intergenic | 35.0% | |
| CTGTGTTGGAATTGATATTG+GGG | + | chr1_2:8207649-8207668 | None:intergenic | 35.0% | |
| GCTGTGTTGGAATTGATATT+GGG | + | chr1_2:8207650-8207669 | None:intergenic | 35.0% | |
| TGCTGTGTTGGAATTGATAT+TGG | + | chr1_2:8207651-8207670 | None:intergenic | 35.0% | |
| ! | TTTTTGCTACAGGTTCTACA+TGG | - | chr1_2:8207859-8207878 | Msa0053700:intron | 35.0% |
| ! | CAGCAGCATTAAACATCTTT+TGG | + | chr1_2:8208261-8208280 | None:intergenic | 35.0% |
| TTGTGTTTGTTCATGAAGGT+TGG | - | chr1_2:8208496-8208515 | Msa0053700:intron | 35.0% | |
| AGATAGTGATCCTATGATAG+AGG | - | chr1_2:8207098-8207117 | Msa0053700:intron | 35.0% | |
| TGGATTTCTGACTATGCTAT+TGG | - | chr1_2:8207126-8207145 | Msa0053700:intron | 35.0% | |
| GGATTTCTGACTATGCTATT+GGG | - | chr1_2:8207127-8207146 | Msa0053700:intron | 35.0% | |
| AAATTTGTGGTAAGGCCAAT+TGG | - | chr1_2:8207200-8207219 | Msa0053700:intron | 35.0% | |
| ! | GACTTCAGTTACTTTCATCT+TGG | - | chr1_2:8207272-8207291 | Msa0053700:intron | 35.0% |
| AGCTGATAATCTGTGTTTCA+AGG | - | chr1_2:8207317-8207336 | Msa0053700:intron | 35.0% | |
| AAGCATATTTATGCACCTCA+TGG | - | chr1_2:8207413-8207432 | Msa0053700:intron | 35.0% | |
| TGGAATTGATATTGGGGAAA+AGG | + | chr1_2:8207643-8207662 | None:intergenic | 35.0% | |
| CTGTGTTGGAATTGATATTG+GGG | + | chr1_2:8207649-8207668 | None:intergenic | 35.0% | |
| GCTGTGTTGGAATTGATATT+GGG | + | chr1_2:8207650-8207669 | None:intergenic | 35.0% | |
| TGCTGTGTTGGAATTGATAT+TGG | + | chr1_2:8207651-8207670 | None:intergenic | 35.0% | |
| ! | TTTTTGCTACAGGTTCTACA+TGG | - | chr1_2:8207859-8207878 | Msa0053700:intron | 35.0% |
| ! | CAGCAGCATTAAACATCTTT+TGG | + | chr1_2:8208261-8208280 | None:intergenic | 35.0% |
| TTGTGTTTGTTCATGAAGGT+TGG | - | chr1_2:8208496-8208515 | Msa0053700:intron | 35.0% | |
| TAGTGATCCTATGATAGAGG+TGG | - | chr1_2:8207101-8207120 | Msa0053700:intron | 40.0% | |
| ATCCTATGATAGAGGTGGTT+TGG | - | chr1_2:8207106-8207125 | Msa0053700:intron | 40.0% | |
| ATCCAAACCACCTCTATCAT+AGG | + | chr1_2:8207111-8207130 | None:intergenic | 40.0% | |
| TGAGGTCATTCTCAAAGGTT+AGG | - | chr1_2:8207226-8207245 | Msa0053700:intron | 40.0% | |
| ! | TCAGTTACTTTCATCTTGGC+AGG | - | chr1_2:8207276-8207295 | Msa0053700:intron | 40.0% |
| ! | CAGTTACTTTCATCTTGGCA+GGG | - | chr1_2:8207277-8207296 | Msa0053700:intron | 40.0% |
| TTGCTACACTCACATACCTT+TGG | - | chr1_2:8207368-8207387 | Msa0053700:intron | 40.0% | |
| ATACCTTTGGATCACTTGCA+AGG | - | chr1_2:8207381-8207400 | Msa0053700:intron | 40.0% | |
| TATCCTTGCAAGTGATCCAA+AGG | + | chr1_2:8207387-8207406 | None:intergenic | 40.0% | |
| !!! | AAGGTTTTAAGGCAAGCAAC+TGG | + | chr1_2:8207624-8207643 | None:intergenic | 40.0% |
| TCAATTCCAACACAGCAATC+AGG | - | chr1_2:8207654-8207673 | Msa0053700:intron | 40.0% | |
| CAATTCCAACACAGCAATCA+GGG | - | chr1_2:8207655-8207674 | Msa0053700:intron | 40.0% | |
| TATTTCCCTGATTGCTGTGT+TGG | + | chr1_2:8207663-8207682 | None:intergenic | 40.0% | |
| CTCTTGAAATCGCTTCTAGA+TGG | + | chr1_2:8207708-8207727 | None:intergenic | 40.0% | |
| ! | CAACTTTCAGCTTTTTGTCG+TGG | - | chr1_2:8207812-8207831 | Msa0053700:intron | 40.0% |
| TGAACAAAAGGATGGATCAG+TGG | - | chr1_2:8207955-8207974 | Msa0053700:intron | 40.0% | |
| AAAGCACGTTCGAAGAAACA+AGG | - | chr1_2:8208016-8208035 | Msa0053700:intron | 40.0% | |
| AAGCACGTTCGAAGAAACAA+GGG | - | chr1_2:8208017-8208036 | Msa0053700:intron | 40.0% | |
| TTGTGCACACAGAACCAAAA+GGG | + | chr1_2:8208071-8208090 | None:intergenic | 40.0% | |
| CTGTGTCTGCTAATGACAAT+AGG | - | chr1_2:8208092-8208111 | Msa0053700:intron | 40.0% | |
| GGCAAGCAGAGATAAAAACT+TGG | + | chr1_2:8208300-8208319 | None:intergenic | 40.0% | |
| TAGTGATCCTATGATAGAGG+TGG | - | chr1_2:8207101-8207120 | Msa0053700:intron | 40.0% | |
| ATCCTATGATAGAGGTGGTT+TGG | - | chr1_2:8207106-8207125 | Msa0053700:intron | 40.0% | |
| ATCCAAACCACCTCTATCAT+AGG | + | chr1_2:8207111-8207130 | None:intergenic | 40.0% | |
| TGAGGTCATTCTCAAAGGTT+AGG | - | chr1_2:8207226-8207245 | Msa0053700:intron | 40.0% | |
| ! | TCAGTTACTTTCATCTTGGC+AGG | - | chr1_2:8207276-8207295 | Msa0053700:intron | 40.0% |
| ! | CAGTTACTTTCATCTTGGCA+GGG | - | chr1_2:8207277-8207296 | Msa0053700:intron | 40.0% |
| TTGCTACACTCACATACCTT+TGG | - | chr1_2:8207368-8207387 | Msa0053700:intron | 40.0% | |
| ATACCTTTGGATCACTTGCA+AGG | - | chr1_2:8207381-8207400 | Msa0053700:intron | 40.0% | |
| TATCCTTGCAAGTGATCCAA+AGG | + | chr1_2:8207387-8207406 | None:intergenic | 40.0% | |
| !!! | AAGGTTTTAAGGCAAGCAAC+TGG | + | chr1_2:8207624-8207643 | None:intergenic | 40.0% |
| TCAATTCCAACACAGCAATC+AGG | - | chr1_2:8207654-8207673 | Msa0053700:intron | 40.0% | |
| CAATTCCAACACAGCAATCA+GGG | - | chr1_2:8207655-8207674 | Msa0053700:intron | 40.0% | |
| TATTTCCCTGATTGCTGTGT+TGG | + | chr1_2:8207663-8207682 | None:intergenic | 40.0% | |
| CTCTTGAAATCGCTTCTAGA+TGG | + | chr1_2:8207708-8207727 | None:intergenic | 40.0% | |
| ! | CAACTTTCAGCTTTTTGTCG+TGG | - | chr1_2:8207812-8207831 | Msa0053700:intron | 40.0% |
| TGAACAAAAGGATGGATCAG+TGG | - | chr1_2:8207955-8207974 | Msa0053700:intron | 40.0% | |
| AAAGCACGTTCGAAGAAACA+AGG | - | chr1_2:8208016-8208035 | Msa0053700:intron | 40.0% | |
| AAGCACGTTCGAAGAAACAA+GGG | - | chr1_2:8208017-8208036 | Msa0053700:intron | 40.0% | |
| TTGTGCACACAGAACCAAAA+GGG | + | chr1_2:8208071-8208090 | None:intergenic | 40.0% | |
| CTGTGTCTGCTAATGACAAT+AGG | - | chr1_2:8208092-8208111 | Msa0053700:intron | 40.0% | |
| GGCAAGCAGAGATAAAAACT+TGG | + | chr1_2:8208300-8208319 | None:intergenic | 40.0% | |
| AGAATGACCTCACGACCAAT+TGG | + | chr1_2:8207218-8207237 | None:intergenic | 45.0% | |
| ! | GCAGGGAGAACAAGCTTTAT+TGG | - | chr1_2:8207294-8207313 | Msa0053700:intron | 45.0% |
| AAGGCAAGCAACTGGTTACA+TGG | + | chr1_2:8207616-8207635 | None:intergenic | 45.0% | |
| TTGCGTGCTGAACAAAAGGA+TGG | - | chr1_2:8207947-8207966 | Msa0053700:intron | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | - | chr1_2:8207958-8207977 | Msa0053700:intron | 45.0% | |
| !! | ACACAGGTTGGTGAACTTGA+TGG | - | chr1_2:8207989-8208008 | Msa0053700:intron | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | - | chr1_2:8207993-8208012 | Msa0053700:intron | 45.0% |
| GAAGAAACAAGGGAGGAAGA+GGG | - | chr1_2:8208027-8208046 | Msa0053700:intron | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | - | chr1_2:8208044-8208063 | Msa0053700:intron | 45.0% | |
| ! | TGTGGATTTGAGGACCCTTT+TGG | - | chr1_2:8208054-8208073 | Msa0053700:intron | 45.0% |
| CTTGTGCACACAGAACCAAA+AGG | + | chr1_2:8208072-8208091 | None:intergenic | 45.0% | |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | - | chr1_2:8208142-8208161 | Msa0053700:intron | 45.0% |
| AGGTGATGCATCACAGAGAA+TGG | - | chr1_2:8208162-8208181 | Msa0053700:intron | 45.0% | |
| AGAATGACCTCACGACCAAT+TGG | + | chr1_2:8207218-8207237 | None:intergenic | 45.0% | |
| ! | GCAGGGAGAACAAGCTTTAT+TGG | - | chr1_2:8207294-8207313 | Msa0053700:intron | 45.0% |
| AAGGCAAGCAACTGGTTACA+TGG | + | chr1_2:8207616-8207635 | None:intergenic | 45.0% | |
| TTGCGTGCTGAACAAAAGGA+TGG | - | chr1_2:8207947-8207966 | Msa0053700:intron | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | - | chr1_2:8207958-8207977 | Msa0053700:intron | 45.0% | |
| !! | ACACAGGTTGGTGAACTTGA+TGG | - | chr1_2:8207989-8208008 | Msa0053700:intron | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | - | chr1_2:8207993-8208012 | Msa0053700:intron | 45.0% |
| GAAGAAACAAGGGAGGAAGA+GGG | - | chr1_2:8208027-8208046 | Msa0053700:intron | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | - | chr1_2:8208044-8208063 | Msa0053700:intron | 45.0% | |
| ! | TGTGGATTTGAGGACCCTTT+TGG | - | chr1_2:8208054-8208073 | Msa0053700:intron | 45.0% |
| CTTGTGCACACAGAACCAAA+AGG | + | chr1_2:8208072-8208091 | None:intergenic | 45.0% | |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | - | chr1_2:8208142-8208161 | Msa0053700:intron | 45.0% |
| AGGTGATGCATCACAGAGAA+TGG | - | chr1_2:8208162-8208181 | Msa0053700:intron | 45.0% | |
| !! | ATAAAAAAAATATTGAAATA+TGG | + | chr1_2:8208555-8208574 | None:intergenic | 5.0% |
| !!! | TTCAATATTTTTTTTATTTA+TGG | - | chr1_2:8208558-8208577 | Msa0053700:intron | 5.0% |
| !! | ATAAAAAAAATATTGAAATA+TGG | + | chr1_2:8208555-8208574 | None:intergenic | 5.0% |
| !!! | TTCAATATTTTTTTTATTTA+TGG | - | chr1_2:8208558-8208577 | Msa0053700:intron | 5.0% |
| GGTCGTGAGGTCATTCTCAA+AGG | - | chr1_2:8207221-8207240 | Msa0053700:intron | 50.0% | |
| CAGGTTCTACATGGTGCATC+TGG | - | chr1_2:8207868-8207887 | Msa0053700:intron | 50.0% | |
| GTCGTTGCGTGCTGAACAAA+AGG | - | chr1_2:8207943-8207962 | Msa0053700:intron | 50.0% | |
| ! | AGTGGTGGAGAGTAGAACAC+AGG | - | chr1_2:8207973-8207992 | Msa0053700:intron | 50.0% |
| GTGGAGAGTAGAACACAGGT+TGG | - | chr1_2:8207977-8207996 | Msa0053700:intron | 50.0% | |
| !! | CAGGTTGGTGAACTTGATGG+AGG | - | chr1_2:8207992-8208011 | Msa0053700:intron | 50.0% |
| CACGTTCGAAGAAACAAGGG+AGG | - | chr1_2:8208020-8208039 | Msa0053700:intron | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | - | chr1_2:8208026-8208045 | Msa0053700:intron | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | + | chr1_2:8208160-8208179 | None:intergenic | 50.0% | |
| GGTCGTGAGGTCATTCTCAA+AGG | - | chr1_2:8207221-8207240 | Msa0053700:intron | 50.0% | |
| CAGGTTCTACATGGTGCATC+TGG | - | chr1_2:8207868-8207887 | Msa0053700:intron | 50.0% | |
| GTCGTTGCGTGCTGAACAAA+AGG | - | chr1_2:8207943-8207962 | Msa0053700:intron | 50.0% | |
| ! | AGTGGTGGAGAGTAGAACAC+AGG | - | chr1_2:8207973-8207992 | Msa0053700:intron | 50.0% |
| GTGGAGAGTAGAACACAGGT+TGG | - | chr1_2:8207977-8207996 | Msa0053700:intron | 50.0% | |
| !! | CAGGTTGGTGAACTTGATGG+AGG | - | chr1_2:8207992-8208011 | Msa0053700:intron | 50.0% |
| CACGTTCGAAGAAACAAGGG+AGG | - | chr1_2:8208020-8208039 | Msa0053700:intron | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | - | chr1_2:8208026-8208045 | Msa0053700:intron | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | + | chr1_2:8208160-8208179 | None:intergenic | 50.0% | |
| GGTAAGGCCAATTGGTCGTG+AGG | - | chr1_2:8207208-8207227 | Msa0053700:intron | 55.0% | |
| AGGGAGGAAGAGGGATGTTG+TGG | - | chr1_2:8208036-8208055 | Msa0053700:intron | 55.0% | |
| GAATGCGATTGAAGCGCGCA+TGG | - | chr1_2:8208198-8208217 | Msa0053700:intron | 55.0% | |
| GGTAAGGCCAATTGGTCGTG+AGG | - | chr1_2:8207208-8207227 | Msa0053700:intron | 55.0% | |
| AGGGAGGAAGAGGGATGTTG+TGG | - | chr1_2:8208036-8208055 | Msa0053700:intron | 55.0% | |
| GAATGCGATTGAAGCGCGCA+TGG | - | chr1_2:8208198-8208217 | Msa0053700:intron | 55.0% | |
| GCGATTGAAGCGCGCATGGT+TGG | - | chr1_2:8208202-8208221 | Msa0053700:intron | 60.0% | |
| GCGATTGAAGCGCGCATGGT+TGG | - | chr1_2:8208202-8208221 | Msa0053700:intron | 60.0% | |
| ! | GAAGCGCGCATGGTTGGTGC+TGG | - | chr1_2:8208208-8208227 | Msa0053700:intron | 65.0% |
| ! | GAAGCGCGCATGGTTGGTGC+TGG | - | chr1_2:8208208-8208227 | Msa0053700:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 8206998 | 8208767 | 8206998 | ID=Msa0053700;Name=Msa0053700 |
| chr1_2 | mRNA | 8206998 | 8208767 | 8206998 | ID=Msa0053700-mRNA-1;Parent=Msa0053700;Name=Msa0053700-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.33|0|0.75|0|0.5|4|0|74 |
| chr1_2 | exon | 8208764 | 8208767 | 8208764 | ID=Msa0053700-mRNA-1:exon:2956;Parent=Msa0053700-mRNA-1 |
| chr1_2 | exon | 8207743 | 8207829 | 8207743 | ID=Msa0053700-mRNA-1:exon:2955;Parent=Msa0053700-mRNA-1 |
| chr1_2 | exon | 8207546 | 8207601 | 8207546 | ID=Msa0053700-mRNA-1:exon:2954;Parent=Msa0053700-mRNA-1 |
| chr1_2 | exon | 8206998 | 8207075 | 8206998 | ID=Msa0053700-mRNA-1:exon:2953;Parent=Msa0053700-mRNA-1 |
| chr1_2 | CDS | 8208764 | 8208767 | 8208764 | ID=Msa0053700-mRNA-1:cds;Parent=Msa0053700-mRNA-1 |
| chr1_2 | CDS | 8207743 | 8207829 | 8207743 | ID=Msa0053700-mRNA-1:cds;Parent=Msa0053700-mRNA-1 |
| chr1_2 | CDS | 8207546 | 8207601 | 8207546 | ID=Msa0053700-mRNA-1:cds;Parent=Msa0053700-mRNA-1 |
| chr1_2 | CDS | 8206998 | 8207075 | 8206998 | ID=Msa0053700-mRNA-1:cds;Parent=Msa0053700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
