Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289300 | RHN76102.1 | 63.448 | 145 | 48 | 2 | 59 | 199 | 258 | 401 | 1.01e-41 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289300 | sp|Q9XE58|SCL14_ARATH | 38.571 | 140 | 82 | 2 | 58 | 193 | 352 | 491 | 4.72e-20 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289300 | A0A396JFP7 | 63.448 | 145 | 48 | 2 | 59 | 199 | 258 | 401 | 4.82e-42 | 165 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1289300 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047280 | Msa1289300 | 0.814799 | 1.281399e-51 | -8.615850e-47 |
| Msa0049390 | Msa1289300 | 0.820447 | 6.827204e-53 | -8.615850e-47 |
| Msa0053690 | Msa1289300 | 0.884221 | 2.307659e-71 | -8.615850e-47 |
| Msa0053700 | Msa1289300 | 0.889325 | 2.680183e-73 | -8.615850e-47 |
| Msa0055100 | Msa1289300 | 0.805308 | 1.421636e-49 | -8.615850e-47 |
| Msa0065010 | Msa1289300 | 0.817961 | 2.513093e-52 | -8.615850e-47 |
| Msa0068020 | Msa1289300 | 0.802635 | 5.109385e-49 | -8.615850e-47 |
| Msa0070170 | Msa1289300 | 0.809489 | 1.845272e-50 | -8.615850e-47 |
| Msa0070430 | Msa1289300 | 0.801402 | 9.156999e-49 | -8.615850e-47 |
| Msa0091590 | Msa1289300 | 0.807264 | 5.501413e-50 | -8.615850e-47 |
| Msa0101180 | Msa1289300 | 0.814526 | 1.473421e-51 | -8.615850e-47 |
| Msa0108870 | Msa1289300 | 0.800748 | 1.246058e-48 | -8.615850e-47 |
| Msa0115370 | Msa1289300 | 0.810476 | 1.131266e-50 | -8.615850e-47 |
| Msa0118540 | Msa1289300 | 0.808962 | 2.393135e-50 | -8.615850e-47 |
| Msa0609220 | Msa1289300 | 0.800203 | 1.608801e-48 | -8.615850e-47 |
| Msa0618930 | Msa1289300 | 0.804449 | 2.149240e-49 | -8.615850e-47 |
| Msa0619920 | Msa1289300 | 0.841888 | 3.616134e-58 | -8.615850e-47 |
| Msa0626940 | Msa1289300 | 0.821355 | 4.219006e-53 | -8.615850e-47 |
| Msa0659990 | Msa1289300 | 0.828885 | 7.011334e-55 | -8.615850e-47 |
| Msa0662630 | Msa1289300 | 0.803880 | 2.822776e-49 | -8.615850e-47 |
| Msa0665080 | Msa1289300 | 0.810929 | 9.028986e-51 | -8.615850e-47 |
| Msa0702150 | Msa1289300 | 0.833907 | 4.071909e-56 | -8.615850e-47 |
| Msa0702270 | Msa1289300 | 0.837361 | 5.439754e-57 | -8.615850e-47 |
| Msa0702580 | Msa1289300 | 0.839168 | 1.862298e-57 | -8.615850e-47 |
| Msa0702670 | Msa1289300 | 0.836865 | 7.284216e-57 | -8.615850e-47 |
| Msa0705390 | Msa1289300 | 0.811653 | 6.287695e-51 | -8.615850e-47 |
| Msa0747170 | Msa1289300 | 0.835311 | 1.807037e-56 | -8.615850e-47 |
| Msa0792780 | Msa1289300 | 0.825677 | 4.113726e-54 | -8.615850e-47 |
| Msa0798090 | Msa1289300 | 0.875371 | 3.249484e-68 | -8.615850e-47 |
| Msa0798100 | Msa1289300 | 0.848805 | 4.850397e-60 | -8.615850e-47 |
| Msa0799010 | Msa1289300 | -0.804985 | 1.660573e-49 | -8.615850e-47 |
| Msa0799480 | Msa1289300 | 0.906466 | 1.440040e-80 | -8.615850e-47 |
| Msa0832050 | Msa1289300 | 0.805562 | 1.257242e-49 | -8.615850e-47 |
| Msa0126770 | Msa1289300 | 0.810611 | 1.057782e-50 | -8.615850e-47 |
| Msa0126840 | Msa1289300 | 0.800904 | 1.158116e-48 | -8.615850e-47 |
| Msa0139990 | Msa1289300 | 0.815510 | 8.908245e-52 | -8.615850e-47 |
| Msa0161410 | Msa1289300 | 0.813755 | 2.179998e-51 | -8.615850e-47 |
| Msa0164370 | Msa1289300 | 0.993179 | 5.637363e-198 | -8.615850e-47 |
| Msa0166750 | Msa1289300 | 0.806684 | 7.298422e-50 | -8.615850e-47 |
| Msa0174000 | Msa1289300 | 0.802738 | 4.866014e-49 | -8.615850e-47 |
| Msa0183460 | Msa1289300 | 0.807649 | 4.560054e-50 | -8.615850e-47 |
| Msa0183870 | Msa1289300 | 0.817407 | 3.350233e-52 | -8.615850e-47 |
| Msa0193600 | Msa1289300 | 0.810923 | 9.055197e-51 | -8.615850e-47 |
| Msa0194560 | Msa1289300 | 0.803673 | 3.115313e-49 | -8.615850e-47 |
| Msa0229360 | Msa1289300 | 0.807463 | 4.992573e-50 | -8.615850e-47 |
| Msa1253400 | Msa1289300 | 0.906373 | 1.590182e-80 | -8.615850e-47 |
| Msa1253810 | Msa1289300 | 0.862942 | 3.543784e-64 | -8.615850e-47 |
| Msa1279590 | Msa1289300 | 0.938346 | 7.837577e-99 | -8.615850e-47 |
| Msa1289300 | Msa1297600 | 0.976030 | 4.720249e-141 | -8.615850e-47 |
| Msa1289300 | Msa1320580 | 0.820358 | 7.153202e-53 | -8.615850e-47 |
| Msa1289300 | Msa1323800 | 0.811508 | 6.760274e-51 | -8.615850e-47 |
| Msa1289300 | Msa1323990 | 0.836716 | 7.949599e-57 | -8.615850e-47 |
| Msa1289300 | Msa1325930 | 0.813611 | 2.344402e-51 | -8.615850e-47 |
| Msa1289300 | Msa1381650 | 0.805953 | 1.040719e-49 | -8.615850e-47 |
| Msa1289300 | Msa1411950 | 0.802470 | 5.526727e-49 | -8.615850e-47 |
| Msa1289300 | Msa1447890 | 0.800707 | 1.270114e-48 | -8.615850e-47 |
| Msa1289300 | Msa1455280 | 0.805701 | 1.175679e-49 | -8.615850e-47 |
| Msa0364990 | Msa1289300 | 0.916920 | 9.956353e-86 | -8.615850e-47 |
| Msa0414020 | Msa1289300 | 0.915432 | 5.926549e-85 | -8.615850e-47 |
| Msa0431770 | Msa1289300 | 0.842782 | 2.095914e-58 | -8.615850e-47 |
| Msa0458640 | Msa1289300 | 0.807327 | 5.336176e-50 | -8.615850e-47 |
| Msa0467260 | Msa1289300 | -0.809610 | 1.737899e-50 | -8.615850e-47 |
| Msa0990830 | Msa1289300 | 0.824267 | 8.852405e-54 | -8.615850e-47 |
| Msa1002600 | Msa1289300 | -0.801470 | 8.868367e-49 | -8.615850e-47 |
| Msa1020100 | Msa1289300 | 0.816021 | 6.854877e-52 | -8.615850e-47 |
| Msa1025940 | Msa1289300 | 0.823114 | 1.648977e-53 | -8.615850e-47 |
| Msa1059310 | Msa1289300 | 0.822592 | 2.180961e-53 | -8.615850e-47 |
| Msa1067070 | Msa1289300 | 0.903269 | 4.132032e-79 | -8.615850e-47 |
| Msa1070390 | Msa1289300 | 0.814907 | 1.212703e-51 | -8.615850e-47 |
| Msa1071530 | Msa1289300 | 0.808289 | 3.332852e-50 | -8.615850e-47 |
| Msa1088250 | Msa1289300 | -0.801366 | 9.317139e-49 | -8.615850e-47 |
| Msa0273650 | Msa1289300 | 0.810230 | 1.278433e-50 | -8.615850e-47 |
| Msa0296920 | Msa1289300 | 0.803940 | 2.742600e-49 | -8.615850e-47 |
| Msa0319330 | Msa1289300 | 0.808486 | 3.024987e-50 | -8.615850e-47 |
| Msa0322590 | Msa1289300 | 0.803702 | 3.072838e-49 | -8.615850e-47 |
| Msa0337500 | Msa1289300 | 0.886538 | 3.135623e-72 | -8.615850e-47 |
| Msa0337510 | Msa1289300 | 0.914655 | 1.486152e-84 | -8.615850e-47 |
| Msa1135810 | Msa1289300 | -0.820876 | 5.440660e-53 | -8.615850e-47 |
| Msa1154490 | Msa1289300 | 0.816855 | 4.459014e-52 | -8.615850e-47 |
| Msa1165960 | Msa1289300 | 0.801184 | 1.014723e-48 | -8.615850e-47 |
| Msa1202580 | Msa1289300 | 0.805034 | 1.621651e-49 | -8.615850e-47 |
| Msa1206650 | Msa1289300 | 0.803369 | 3.602973e-49 | -8.615850e-47 |
| Msa1211830 | Msa1289300 | 0.806280 | 8.879623e-50 | -8.615850e-47 |
| Msa0576730 | Msa1289300 | 0.835012 | 2.149130e-56 | -8.615850e-47 |
| Msa0581130 | Msa1289300 | 0.802258 | 6.109131e-49 | -8.615850e-47 |
| Msa0590650 | Msa1289300 | 0.802629 | 5.124455e-49 | -8.615850e-47 |
| Msa0594710 | Msa1289300 | 0.811580 | 6.521479e-51 | -8.615850e-47 |
| Msa0895310 | Msa1289300 | 0.801285 | 9.675734e-49 | -8.615850e-47 |
| Msa0943170 | Msa1289300 | 0.813996 | 1.929063e-51 | -8.615850e-47 |
| Msa0943270 | Msa1289300 | 0.833311 | 5.735463e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289300 | MtrunA17_Chr2g0328391 | 63.448 | 145 | 48 | 2 | 59 | 199 | 258 | 401 | 9.29e-46 | 165 |
| Msa1289300 | MtrunA17_Chr2g0323051 | 65.000 | 80 | 26 | 1 | 228 | 307 | 227 | 304 | 9.31e-26 | 108 |
| Msa1289300 | MtrunA17_Chr4g0031721 | 43.284 | 134 | 74 | 1 | 69 | 200 | 285 | 418 | 1.53e-24 | 104 |
| Msa1289300 | MtrunA17_Chr4g0031711 | 63.014 | 73 | 27 | 0 | 79 | 151 | 340 | 412 | 2.07e-24 | 104 |
| Msa1289300 | MtrunA17_Chr3g0140681 | 64.384 | 73 | 19 | 1 | 176 | 241 | 201 | 273 | 5.40e-23 | 98.6 |
| Msa1289300 | MtrunA17_Chr4g0031701 | 61.972 | 71 | 27 | 0 | 81 | 151 | 235 | 305 | 1.83e-21 | 95.5 |
| Msa1289300 | MtrunA17_Chr7g0238891 | 48.571 | 105 | 52 | 1 | 82 | 184 | 354 | 458 | 2.23e-21 | 95.5 |
| Msa1289300 | MtrunA17_Chr4g0031731 | 61.765 | 68 | 26 | 0 | 81 | 148 | 235 | 302 | 9.59e-21 | 93.2 |
| Msa1289300 | MtrunA17_Chr4g0023601 | 57.534 | 73 | 28 | 1 | 212 | 281 | 135 | 207 | 1.78e-19 | 89.4 |
| Msa1289300 | MtrunA17_Chr2g0328381 | 41.176 | 119 | 68 | 1 | 71 | 187 | 246 | 364 | 3.65e-18 | 85.5 |
| Msa1289300 | MtrunA17_Chr2g0328361 | 58.065 | 62 | 26 | 0 | 86 | 147 | 260 | 321 | 2.74e-17 | 82.8 |
| Msa1289300 | MtrunA17_Chr2g0328341 | 60.656 | 61 | 21 | 1 | 90 | 147 | 259 | 319 | 3.30e-16 | 79.7 |
| Msa1289300 | MtrunA17_Chr2g0328401 | 56.522 | 69 | 28 | 1 | 80 | 146 | 268 | 336 | 2.58e-15 | 77.0 |
| Msa1289300 | MtrunA17_Chr4g0031741 | 61.818 | 55 | 21 | 0 | 94 | 148 | 278 | 332 | 3.26e-14 | 73.6 |
| Msa1289300 | MtrunA17_Chr2g0328411 | 51.351 | 74 | 29 | 2 | 80 | 146 | 262 | 335 | 5.31e-13 | 70.1 |
| Msa1289300 | MtrunA17_Chr2g0328431 | 50.000 | 74 | 30 | 1 | 80 | 146 | 262 | 335 | 1.16e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289300 | AT1G07530.1 | 38.571 | 140 | 82 | 2 | 58 | 193 | 352 | 491 | 4.79e-21 | 94.7 |
| Msa1289300 | AT2G32290.1 | 74.074 | 54 | 14 | 0 | 228 | 281 | 219 | 272 | 3.40e-20 | 92.0 |
| Msa1289300 | AT4G15210.3 | 68.519 | 54 | 17 | 0 | 228 | 281 | 103 | 156 | 2.94e-19 | 88.6 |
| Msa1289300 | AT4G15210.4 | 68.519 | 54 | 17 | 0 | 228 | 281 | 103 | 156 | 2.94e-19 | 88.6 |
| Msa1289300 | AT4G15210.2 | 68.519 | 54 | 17 | 0 | 228 | 281 | 156 | 209 | 3.02e-19 | 88.6 |
| Msa1289300 | AT4G15210.1 | 68.519 | 54 | 17 | 0 | 228 | 281 | 156 | 209 | 3.63e-19 | 88.6 |
| Msa1289300 | AT2G29060.2 | 39.669 | 121 | 71 | 1 | 80 | 198 | 264 | 384 | 8.37e-19 | 87.8 |
| Msa1289300 | AT2G29060.1 | 39.669 | 121 | 71 | 1 | 80 | 198 | 301 | 421 | 9.65e-19 | 87.8 |
| Msa1289300 | AT2G37650.1 | 44.444 | 99 | 53 | 1 | 88 | 184 | 335 | 433 | 1.21e-17 | 84.7 |
| Msa1289300 | AT2G37650.2 | 44.444 | 99 | 53 | 1 | 88 | 184 | 323 | 421 | 1.41e-17 | 84.3 |
| Msa1289300 | AT1G07520.2 | 61.194 | 67 | 23 | 1 | 82 | 148 | 139 | 202 | 2.25e-17 | 83.6 |
| Msa1289300 | AT1G07520.4 | 61.194 | 67 | 23 | 1 | 82 | 148 | 139 | 202 | 2.25e-17 | 83.6 |
| Msa1289300 | AT1G07520.3 | 62.121 | 66 | 22 | 1 | 82 | 147 | 304 | 366 | 2.56e-17 | 83.6 |
| Msa1289300 | AT1G07520.1 | 62.121 | 66 | 22 | 1 | 82 | 147 | 303 | 365 | 2.70e-17 | 83.6 |
| Msa1289300 | AT2G29065.1 | 60.345 | 58 | 23 | 0 | 94 | 151 | 246 | 303 | 7.97e-13 | 69.7 |
| Msa1289300 | AT3G46600.3 | 41.935 | 93 | 51 | 2 | 59 | 151 | 142 | 231 | 2.64e-12 | 68.2 |
| Msa1289300 | AT3G46600.1 | 41.935 | 93 | 51 | 2 | 59 | 151 | 174 | 263 | 2.71e-12 | 68.2 |
| Msa1289300 | AT4G00490.1 | 50.909 | 55 | 27 | 0 | 228 | 282 | 236 | 290 | 3.85e-12 | 67.8 |
| Msa1289300 | AT5G59450.1 | 46.667 | 75 | 37 | 1 | 80 | 151 | 204 | 278 | 4.91e-12 | 67.4 |
| Msa1289300 | AT2G45880.1 | 34.043 | 94 | 47 | 1 | 204 | 282 | 350 | 443 | 4.37e-11 | 64.7 |
Find 101 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATGTTTATAGATTAATT+AGG | 0.166605 | 8_3:+43161831 | Msa1289300:three_prime_UTR |
| GCAGGGAGAACAAGCTTTAT+TGG | 0.217900 | 8_3:+43157913 | Msa1289300:intron |
| CAGCAGCATTAAACATCTTT+TGG | 0.245647 | 8_3:-43158875 | None:intergenic |
| TCTCGTCTTTCGCGGTTTCT+TGG | 0.271778 | 8_3:+43160548 | Msa1289300:CDS |
| ATATGTTTATAGATTAATTA+GGG | 0.278241 | 8_3:+43161832 | Msa1289300:three_prime_UTR |
| CTTCAAATAGTCAGCCATTC+TGG | 0.282618 | 8_3:-43161683 | None:intergenic |
| AGTGACTATGACAATGTAAT+TGG | 0.287106 | 8_3:+43159324 | Msa1289300:CDS |
| TACCATTAATACCTCTTCTA+TGG | 0.297338 | 8_3:-43156154 | None:intergenic |
| AAGCTTAATAGCAGCCTTAC+TGG | 0.305599 | 8_3:+43161859 | Msa1289300:three_prime_UTR |
| GGCTGGGTATTTCCTGGTAT+TGG | 0.319528 | 8_3:+43161206 | Msa1289300:CDS |
| GAAGAGTTATAAAGAGAATA+TGG | 0.323678 | 8_3:+43161091 | Msa1289300:CDS |
| GGCCATAGAAGAGGTATTAA+TGG | 0.329008 | 8_3:+43156152 | Msa1289300:exon |
| AGAAAATTACCTTGTAAGTA+TGG | 0.331370 | 8_3:-43156189 | None:intergenic |
| AGGAAGCATTCTTGTCCTTC+AGG | 0.331779 | 8_3:+43158761 | Msa1289300:CDS |
| GTTATGTGGATTTCACTCTT+TGG | 0.332758 | 8_3:+43160514 | Msa1289300:CDS |
| TCGCGGTTTCTTGGTAAAAC+AGG | 0.335407 | 8_3:+43160557 | Msa1289300:CDS |
| TGCGATTGAAGCGCATGGTT+GGG | 0.341493 | 8_3:+43158820 | Msa1289300:CDS |
| AATCCTGGACTCACCGCTTA+TGG | 0.358745 | 8_3:-43161572 | None:intergenic |
| TTTCTGCTTACTTTCAGATA+TGG | 0.359746 | 8_3:-43159354 | None:intergenic |
| CCGCTTATGGTGACATCATA+AGG | 0.359764 | 8_3:-43161559 | None:intergenic |
| TCCCTCTCATGCATGATATC+TGG | 0.374941 | 8_3:-43161602 | None:intergenic |
| TGTGGATTTGAGGACCCTTT+TGG | 0.385294 | 8_3:+43158673 | Msa1289300:CDS |
| CTTTAGGTTCCTTTGTTATG+TGG | 0.393628 | 8_3:+43160500 | Msa1289300:intron |
| TGCCTAGGCTGGGTATTTCC+TGG | 0.407995 | 8_3:+43161200 | Msa1289300:CDS |
| AGCTGATAATCTGTGTTTCA+AGG | 0.417769 | 8_3:+43157936 | Msa1289300:CDS |
| ATGAATTGTTGAAGCAGAAT+AGG | 0.424251 | 8_3:+43158741 | Msa1289300:CDS |
| CTGTGTCTGCTAATGACAAT+AGG | 0.426533 | 8_3:+43158711 | Msa1289300:CDS |
| ATAAGGGCTGGTGCACCTAC+TGG | 0.427494 | 8_3:-43161542 | None:intergenic |
| ATAGTCAGCCATTCTGGCTC+TGG | 0.443426 | 8_3:-43161677 | None:intergenic |
| ATGCGATTGAAGCGCATGGT+TGG | 0.447219 | 8_3:+43158819 | Msa1289300:CDS |
| TATATCTATATATATGTTCA+AGG | 0.447915 | 8_3:-43161767 | None:intergenic |
| AGAGGGATGTTGTGGATTTG+AGG | 0.451718 | 8_3:+43158663 | Msa1289300:CDS |
| ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 8_3:+43158608 | Msa1289300:CDS |
| TATGATAATTTAATCAAAGT+TGG | 0.470643 | 8_3:+43161902 | Msa1289300:three_prime_UTR |
| CATATATAATATTTGTGTAC+TGG | 0.480267 | 8_3:-43158850 | None:intergenic |
| ATATCTGGCCTCACTAATCC+TGG | 0.482839 | 8_3:-43161587 | None:intergenic |
| AAACAGCATCTCGTCTTTCG+CGG | 0.485483 | 8_3:+43160540 | Msa1289300:CDS |
| GAGGTAGGACTTGGCCCTGC+TGG | 0.486945 | 8_3:+43161149 | Msa1289300:CDS |
| CGAAGAAACAAGGGAGGAAG+AGG | 0.489890 | 8_3:+43158645 | Msa1289300:CDS |
| TTGAAGCGCATGGTTGGGGC+TGG | 0.490691 | 8_3:+43158825 | Msa1289300:CDS |
| ATGTATGATAACAGTAATGT+TGG | 0.492964 | 8_3:+43156964 | Msa1289300:CDS |
| CTTATAAGCGTGTACGTGGC+AGG | 0.500665 | 8_3:+43161401 | Msa1289300:CDS |
| TCACCATAAGCGGTGAGTCC+AGG | 0.505916 | 8_3:+43161569 | Msa1289300:CDS |
| CGCTTATGGTGACATCATAA+GGG | 0.505983 | 8_3:-43161558 | None:intergenic |
| GCGATTGAAGCGCATGGTTG+GGG | 0.509648 | 8_3:+43158821 | Msa1289300:CDS |
| CGCGGTTTCTTGGTAAAACA+GGG | 0.510516 | 8_3:+43160558 | Msa1289300:CDS |
| ACCTCCTCTTCTTCTCCAGA+TGG | 0.522445 | 8_3:+43160616 | Msa1289300:CDS |
| AAAGCTTAATGTAAGAATCT+CGG | 0.527749 | 8_3:-43161347 | None:intergenic |
| AGGGAGGAAGAGGGATGTTG+TGG | 0.530372 | 8_3:+43158655 | Msa1289300:CDS |
| TTGAGATTCCAGAGCCAGAA+TGG | 0.530384 | 8_3:+43161669 | Msa1289300:three_prime_UTR |
| TTGTCAAATATGAACCAGTA+AGG | 0.531051 | 8_3:-43161873 | None:intergenic |
| AGATATCTAAGTTCTCCAGC+AGG | 0.532605 | 8_3:-43161164 | None:intergenic |
| ATGGTGAAATCAAGGTCGTA+AGG | 0.534375 | 8_3:+43156106 | Msa1289300:five_prime_UTR |
| AGGTGATGCATCACAGAGAA+TGG | 0.535230 | 8_3:+43158781 | Msa1289300:CDS |
| CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 8_3:-43158776 | None:intergenic |
| CTTGTGCACACAGAACCAAA+AGG | 0.550869 | 8_3:-43158688 | None:intergenic |
| TATGGTGACATCATAAGGGC+TGG | 0.556208 | 8_3:-43161554 | None:intergenic |
| TACATGCCATGGTGAAATCA+AGG | 0.560190 | 8_3:+43156098 | Msa1289300:five_prime_UTR |
| AATGGCTGACTATTTGAAGC+AGG | 0.562267 | 8_3:+43161687 | Msa1289300:three_prime_UTR |
| CGAACCATCTGGAGAAGAAG+AGG | 0.566975 | 8_3:-43160620 | None:intergenic |
| ATGTTTATAGATTAATTAGG+GGG | 0.570090 | 8_3:+43161834 | Msa1289300:three_prime_UTR |
| GCTTTACTCATGATGCTGAA+AGG | 0.577029 | 8_3:+43161365 | Msa1289300:CDS |
| TTGTGCACACAGAACCAAAA+GGG | 0.577974 | 8_3:-43158687 | None:intergenic |
| CCTTATGATGTCACCATAAG+CGG | 0.579231 | 8_3:+43161559 | Msa1289300:CDS |
| GAAAGATAAGGCCATAGAAG+AGG | 0.588351 | 8_3:+43156143 | Msa1289300:five_prime_UTR |
| GCCAGATATCATGCATGAGA+GGG | 0.594778 | 8_3:+43161601 | Msa1289300:exon |
| GGCCAGATATCATGCATGAG+AGG | 0.594930 | 8_3:+43161600 | Msa1289300:exon |
| AATTGAAGCTAAGAAAGATA+AGG | 0.595945 | 8_3:+43156131 | Msa1289300:five_prime_UTR |
| ATAGACATTGAGGTAGGACT+TGG | 0.597655 | 8_3:+43161140 | Msa1289300:CDS |
| TGAGCTACTGATAGACATTG+AGG | 0.599509 | 8_3:+43161130 | Msa1289300:CDS |
| TGGTGAACTTGATGGAGGGA+AGG | 0.605242 | 8_3:+43158616 | Msa1289300:CDS |
| ACTAAGCCACCATACTTACA+AGG | 0.607997 | 8_3:+43156180 | Msa1289300:CDS |
| CAGTCTTATAAGCGTGTACG+TGG | 0.609552 | 8_3:+43161397 | Msa1289300:CDS |
| GCGAATGCGATTGAAGCGCA+TGG | 0.613896 | 8_3:+43158815 | Msa1289300:CDS |
| AAGGCACGTTCGAAGAAACA+AGG | 0.620215 | 8_3:+43158635 | Msa1289300:CDS |
| CAGAGATCCTTAAAAGCTCG+AGG | 0.621293 | 8_3:+43161645 | Msa1289300:three_prime_UTR |
| AAATTACCTTGTAAGTATGG+TGG | 0.624420 | 8_3:-43156186 | None:intergenic |
| AATGAACTTGCTACATGCCA+TGG | 0.628116 | 8_3:+43156087 | Msa1289300:five_prime_UTR |
| TATTTGAAGCAGGATGGCAA+AGG | 0.629381 | 8_3:+43161697 | Msa1289300:three_prime_UTR |
| ACATTAAATTCTCCAATACC+AGG | 0.631717 | 8_3:-43161218 | None:intergenic |
| GATATCTAAGTTCTCCAGCA+GGG | 0.632849 | 8_3:-43161163 | None:intergenic |
| CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 8_3:+43158611 | Msa1289300:CDS |
| TACCAGGAAATACCCAGCCT+AGG | 0.637604 | 8_3:-43161202 | None:intergenic |
| TGGTGAAATCAAGGTCGTAA+GGG | 0.637782 | 8_3:+43156107 | Msa1289300:five_prime_UTR |
| ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 8_3:+43158577 | Msa1289300:intron |
| CTACTGATAGACATTGAGGT+AGG | 0.639731 | 8_3:+43161134 | Msa1289300:CDS |
| AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 8_3:+43158612 | Msa1289300:CDS |
| GCTGACTATTTGAAGCAGGA+TGG | 0.643683 | 8_3:+43161691 | Msa1289300:three_prime_UTR |
| ACCATCTGGAGAAGAAGAGG+AGG | 0.646740 | 8_3:-43160617 | None:intergenic |
| GAAGAAACAAGGGAGGAAGA+GGG | 0.647199 | 8_3:+43158646 | Msa1289300:CDS |
| TATGTTTATAGATTAATTAG+GGG | 0.649576 | 8_3:+43161833 | Msa1289300:three_prime_UTR |
| TTACGACCTTGATTTCACCA+TGG | 0.665301 | 8_3:-43156104 | None:intergenic |
| CGGTGAGTCCAGGATTAGTG+AGG | 0.671978 | 8_3:+43161579 | Msa1289300:CDS |
| GCAAGGGACAGGCTTCCAGT+AGG | 0.671994 | 8_3:+43161527 | Msa1289300:intron |
| GAGTGAAATCCACATAACAA+AGG | 0.672556 | 8_3:-43160509 | None:intergenic |
| AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 8_3:+43158592 | Msa1289300:CDS |
| TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 8_3:+43158574 | Msa1289300:intron |
| GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 8_3:+43158596 | Msa1289300:CDS |
| TGTACGTGGCAGGTTGACCG+AGG | 0.702164 | 8_3:+43161411 | Msa1289300:CDS |
| CACGTTCGAAGAAACAAGGG+AGG | 0.709283 | 8_3:+43158639 | Msa1289300:CDS |
| AGGCACGTTCGAAGAAACAA+GGG | 0.717525 | 8_3:+43158636 | Msa1289300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATGATTTATAGTTTTT+TGG | + | chr8_3:43156395-43156414 | Msa1289300:intron | 10.0% |
| !! | TATATGTTTATAGATTAATT+AGG | + | chr8_3:43161831-43161850 | Msa1289300:three_prime_UTR | 10.0% |
| !! | ATATGTTTATAGATTAATTA+GGG | + | chr8_3:43161832-43161851 | Msa1289300:three_prime_UTR | 10.0% |
| !!! | TGTATGTTGATTTTTTTATT+TGG | + | chr8_3:43156311-43156330 | Msa1289300:intron | 15.0% |
| !!! | ATATATGTTTAGTTTGATTA+TGG | + | chr8_3:43156352-43156371 | Msa1289300:intron | 15.0% |
| !!! | GATTTTGAAAATACTTTTAT+GGG | + | chr8_3:43156492-43156511 | Msa1289300:intron | 15.0% |
| !!! | ATGATTGAATTGTTTTTATT+TGG | + | chr8_3:43156583-43156602 | Msa1289300:intron | 15.0% |
| !! | TGATTATAATGTAAAATAAG+TGG | + | chr8_3:43158085-43158104 | Msa1289300:intron | 15.0% |
| !!! | ATATATGTTGTTTTGTAAAT+AGG | + | chr8_3:43159205-43159224 | Msa1289300:intron | 15.0% |
| !! | AAAATAAAACAACTTTCAAA+TGG | - | chr8_3:43159469-43159488 | None:intergenic | 15.0% |
| !!! | TTTATTTTACAAATGAATTG+AGG | + | chr8_3:43159481-43159500 | Msa1289300:intron | 15.0% |
| !! | AAATTATTGAGAAATAATGT+TGG | + | chr8_3:43159675-43159694 | Msa1289300:intron | 15.0% |
| !! | TTACATGAATTTAATATCTT+TGG | - | chr8_3:43160651-43160670 | None:intergenic | 15.0% |
| !! | AAAGATATTAAATTCATGTA+AGG | + | chr8_3:43160650-43160669 | Msa1289300:intron | 15.0% |
| !! | AAAGAAGTAATAATAAAAAG+TGG | - | chr8_3:43160966-43160985 | None:intergenic | 15.0% |
| !!! | CATAACAAATTTTAGTAAAA+TGG | - | chr8_3:43161467-43161486 | None:intergenic | 15.0% |
| !! | TGGAATATTTATATGAAAAT+TGG | + | chr8_3:43161500-43161519 | Msa1289300:intron | 15.0% |
| !! | TATATCTATATATATGTTCA+AGG | - | chr8_3:43161770-43161789 | None:intergenic | 15.0% |
| !! | TATGTTTATAGATTAATTAG+GGG | + | chr8_3:43161833-43161852 | Msa1289300:three_prime_UTR | 15.0% |
| !!! | TTATTTGGTGTTTGTTTTAT+AGG | + | chr8_3:43156326-43156345 | Msa1289300:intron | 20.0% |
| !!! | GGATTTTGAAAATACTTTTA+TGG | + | chr8_3:43156491-43156510 | Msa1289300:intron | 20.0% |
| !! | TATTCTAAATAGATGTTAAC+AGG | - | chr8_3:43156620-43156639 | None:intergenic | 20.0% |
| !!! | TATTTAGAATATAGTCTGTT+TGG | + | chr8_3:43156629-43156648 | Msa1289300:intron | 20.0% |
| !!! | TGCTAAAAAATATTGACTTT+TGG | + | chr8_3:43156817-43156836 | Msa1289300:intron | 20.0% |
| !!! | TTTAGTACTTGATTTTTATC+TGG | + | chr8_3:43156863-43156882 | Msa1289300:intron | 20.0% |
| !! | GTAAAAAAAATCTTTGCATT+GGG | - | chr8_3:43157130-43157149 | None:intergenic | 20.0% |
| !! | TGTAAAAAAAATCTTTGCAT+TGG | - | chr8_3:43157131-43157150 | None:intergenic | 20.0% |
| !! | TGTTGAAGTTGTTTATATAT+AGG | + | chr8_3:43157320-43157339 | Msa1289300:intron | 20.0% |
| !!! | TTGTAGCTTAAATTTTGAAT+TGG | + | chr8_3:43157546-43157565 | Msa1289300:intron | 20.0% |
| !!! | TGTAGCTTAAATTTTGAATT+GGG | + | chr8_3:43157547-43157566 | Msa1289300:intron | 20.0% |
| !! | AGATTTGATGAAGATAAAAA+TGG | + | chr8_3:43157598-43157617 | Msa1289300:intron | 20.0% |
| !! | GATTTGATGAAGATAAAAAT+GGG | + | chr8_3:43157599-43157618 | Msa1289300:intron | 20.0% |
| !!! | ATTTTTGAAAAACTAGCAAT+TGG | + | chr8_3:43158170-43158189 | Msa1289300:intron | 20.0% |
| !! | CATATATAATATTTGTGTAC+TGG | - | chr8_3:43158853-43158872 | None:intergenic | 20.0% |
| !!! | AATGTGCAAATTTTTTGAAA+GGG | - | chr8_3:43158938-43158957 | None:intergenic | 20.0% |
| !!! | AAATGTGCAAATTTTTTGAA+AGG | - | chr8_3:43158939-43158958 | None:intergenic | 20.0% |
| !!! | TTTAAAAAACATGGCAATTT+TGG | - | chr8_3:43159031-43159050 | None:intergenic | 20.0% |
| !!! | ACATACATCTTTAAAAAACA+TGG | - | chr8_3:43159040-43159059 | None:intergenic | 20.0% |
| !!! | GTTTTTTAAAGATGTATGTT+TGG | + | chr8_3:43159041-43159060 | Msa1289300:intron | 20.0% |
| !!! | AGAACACATATAATTGTTTT+TGG | + | chr8_3:43159549-43159568 | Msa1289300:intron | 20.0% |
| !! | GTAGGTATTTATTGAATAAA+TGG | + | chr8_3:43159598-43159617 | Msa1289300:intron | 20.0% |
| !! | TGTTATAATAATGAGTGAAT+AGG | + | chr8_3:43159702-43159721 | Msa1289300:intron | 20.0% |
| !! | ACTATATGAATTTCAGAATT+TGG | + | chr8_3:43159943-43159962 | Msa1289300:intron | 20.0% |
| !! | GTATGTAACAAACAAAAATA+TGG | - | chr8_3:43160000-43160019 | None:intergenic | 20.0% |
| !!! | ATATAGTTAGTATCACTTTT+AGG | + | chr8_3:43160081-43160100 | Msa1289300:intron | 20.0% |
| !! | ACAGACGTAATAAAATTAAT+AGG | - | chr8_3:43160199-43160218 | None:intergenic | 20.0% |
| !!! | AAGCATTTATTTTTATCTGA+TGG | + | chr8_3:43160581-43160600 | Msa1289300:CDS | 20.0% |
| !! | TATTATATCTCTTTCTCTAT+AGG | + | chr8_3:43160750-43160769 | Msa1289300:intron | 20.0% |
| !! | TGAACTAAAACAAAAGAATA+CGG | - | chr8_3:43160829-43160848 | None:intergenic | 20.0% |
| !! | TGTTATGTAATGTTTAATGT+TGG | + | chr8_3:43161480-43161499 | Msa1289300:intron | 20.0% |
| !! | ATGTTTATAGATTAATTAGG+GGG | + | chr8_3:43161834-43161853 | Msa1289300:three_prime_UTR | 20.0% |
| ! | AATTGAAGCTAAGAAAGATA+AGG | + | chr8_3:43156131-43156150 | Msa1289300:five_prime_UTR | 25.0% |
| ! | AGAAAATTACCTTGTAAGTA+TGG | - | chr8_3:43156192-43156211 | None:intergenic | 25.0% |
| !!! | TGTTTAGTTTGATTATGGTA+TGG | + | chr8_3:43156357-43156376 | Msa1289300:intron | 25.0% |
| !!! | CATGTTTTGGAAATTTTGTT+TGG | + | chr8_3:43156422-43156441 | Msa1289300:intron | 25.0% |
| !!! | AAATTTTGTTTGGTGTTGAA+GGG | + | chr8_3:43156432-43156451 | Msa1289300:intron | 25.0% |
| !! | TACTTTTATGGGTTTTCAAT+TGG | + | chr8_3:43156503-43156522 | Msa1289300:intron | 25.0% |
| !! | ATTTCATGTTTAACTTTGAG+AGG | + | chr8_3:43156691-43156710 | Msa1289300:intron | 25.0% |
| !!! | GAGAGGATTTTGATATAATT+TGG | + | chr8_3:43156708-43156727 | Msa1289300:intron | 25.0% |
| ! | ATGTATGATAACAGTAATGT+TGG | + | chr8_3:43156964-43156983 | Msa1289300:CDS | 25.0% |
| !! | TATTTAGAATATAGTCTGTC+TGG | + | chr8_3:43157034-43157053 | Msa1289300:intron | 25.0% |
| ! | TTTATGTATCTTTCCATGAT+TGG | - | chr8_3:43157286-43157305 | None:intergenic | 25.0% |
| !! | CTTTATCACTCTTTAAGAAA+AGG | + | chr8_3:43157411-43157430 | Msa1289300:intron | 25.0% |
| !! | ACAAATGAAAGAGTACAATA+TGG | - | chr8_3:43157504-43157523 | None:intergenic | 25.0% |
| ! | AAACTGAAAAAGATTTGAGT+AGG | + | chr8_3:43157656-43157675 | Msa1289300:intron | 25.0% |
| ! | TATCTGTGATTGTAAATTTG+TGG | + | chr8_3:43157806-43157825 | Msa1289300:intron | 25.0% |
| ! | TATGTAATATTTAAGCCATG+AGG | - | chr8_3:43158050-43158069 | None:intergenic | 25.0% |
| !! | TTTTTGCCTAATCTTTCTAA+TGG | + | chr8_3:43158130-43158149 | Msa1289300:intron | 25.0% |
| ! | AATTCTCCATTAGAAAGATT+AGG | - | chr8_3:43158139-43158158 | None:intergenic | 25.0% |
| ! | TTGAAATTTATTGTGTGATC+TGG | + | chr8_3:43158355-43158374 | Msa1289300:intron | 25.0% |
| !!! | CATAAAATGTTTTTTGCTAC+AGG | + | chr8_3:43158468-43158487 | Msa1289300:intron | 25.0% |
| ! | GTACAGAAATTTGAATTCAT+TGG | + | chr8_3:43158513-43158532 | Msa1289300:intron | 25.0% |
| !! | TTTTCTTTTTGTAAGTTGCA+TGG | - | chr8_3:43158539-43158558 | None:intergenic | 25.0% |
| ! | TTAAAGATGTATGTTTGGAT+TGG | + | chr8_3:43159046-43159065 | Msa1289300:intron | 25.0% |
| ! | ATAATTGTGTTTGTTCATGA+AGG | + | chr8_3:43159109-43159128 | Msa1289300:intron | 25.0% |
| ! | TAGGAAACTTCTATTTGATT+AGG | + | chr8_3:43159224-43159243 | Msa1289300:intron | 25.0% |
| ! | GTTAGAGATGAGAAAATTAA+GGG | - | chr8_3:43159267-43159286 | None:intergenic | 25.0% |
| ! | AGTTAGAGATGAGAAAATTA+AGG | - | chr8_3:43159268-43159287 | None:intergenic | 25.0% |
| !!! | TCTCTAACTTTTGTTTATTG+TGG | + | chr8_3:43159279-43159298 | Msa1289300:intron | 25.0% |
| !! | ATTTTACAAATGAATTGAGG+TGG | + | chr8_3:43159484-43159503 | Msa1289300:intron | 25.0% |
| !!! | TTTGGAATTTTGAACTTCAT+TGG | + | chr8_3:43159567-43159586 | Msa1289300:intron | 25.0% |
| ! | CATGTATATTATCTTGCATA+TGG | + | chr8_3:43159621-43159640 | Msa1289300:intron | 25.0% |
| ! | AGTTCCTGATGATTATATTT+AGG | + | chr8_3:43159759-43159778 | Msa1289300:intron | 25.0% |
| ! | CAAACCTAAATATAATCATC+AGG | - | chr8_3:43159766-43159785 | None:intergenic | 25.0% |
| ! | CATAAAATAAGTTATCACCA+AGG | - | chr8_3:43159826-43159845 | None:intergenic | 25.0% |
| !! | TCATTGAAGATATTTTGCAT+TGG | - | chr8_3:43159877-43159896 | None:intergenic | 25.0% |
| !! | TATCTTCAATGATTTGTGTA+TGG | + | chr8_3:43159885-43159904 | Msa1289300:intron | 25.0% |
| ! | AATTCATATAGTTGAAGAAC+TGG | - | chr8_3:43159935-43159954 | None:intergenic | 25.0% |
| ! | GTAACAAACAAAAATATGGT+GGG | - | chr8_3:43159996-43160015 | None:intergenic | 25.0% |
| ! | TGTAACAAACAAAAATATGG+TGG | - | chr8_3:43159997-43160016 | None:intergenic | 25.0% |
| !! | TTTGTTTGTTACATACTAGA+TGG | + | chr8_3:43160004-43160023 | Msa1289300:intron | 25.0% |
| !! | TTTAACTTCTAATGCAAATC+AGG | + | chr8_3:43160119-43160138 | Msa1289300:intron | 25.0% |
| ! | GTTATTGAGGGTAATTAAAT+AGG | + | chr8_3:43160387-43160406 | Msa1289300:intron | 25.0% |
| !! | TTTGGAATTTCACATACTTT+AGG | + | chr8_3:43160484-43160503 | Msa1289300:intron | 25.0% |
| !! | TATGTTGTTTGTTCATGATT+TGG | - | chr8_3:43160725-43160744 | None:intergenic | 25.0% |
| ! | GATAGTAATAGAATATGCAA+AGG | - | chr8_3:43160862-43160881 | None:intergenic | 25.0% |
| !!! | TTCAAGTTTTGCTTATGTTT+AGG | - | chr8_3:43160930-43160949 | None:intergenic | 25.0% |
| ! | GAAGAGTTATAAAGAGAATA+TGG | + | chr8_3:43161091-43161110 | Msa1289300:CDS | 25.0% |
| ! | AAAGCTTAATGTAAGAATCT+CGG | - | chr8_3:43161350-43161369 | None:intergenic | 25.0% |
| ! | ATATGAAAATTGGAAATGCA+AGG | + | chr8_3:43161510-43161529 | Msa1289300:intron | 25.0% |
| ! | TATGAAAATTGGAAATGCAA+GGG | + | chr8_3:43161511-43161530 | Msa1289300:intron | 25.0% |
| !! | GTTTTAATCTGTTGCAGAAA+AGG | + | chr8_3:43156062-43156081 | Msa1289300:five_prime_UTR | 30.0% |
| TACCATTAATACCTCTTCTA+TGG | - | chr8_3:43156157-43156176 | None:intergenic | 30.0% | |
| AAATTACCTTGTAAGTATGG+TGG | - | chr8_3:43156189-43156208 | None:intergenic | 30.0% | |
| ! | ACTTACAAGGTAATTTTCTG+AGG | + | chr8_3:43156193-43156212 | Msa1289300:intron | 30.0% |
| ! | ATGTGTTGTGACATGTTTTT+GGG | + | chr8_3:43156261-43156280 | Msa1289300:intron | 30.0% |
| !!! | GTTTTTTGGTATGCATGTTT+TGG | + | chr8_3:43156409-43156428 | Msa1289300:intron | 30.0% |
| !!! | GAAATTTTGTTTGGTGTTGA+AGG | + | chr8_3:43156431-43156450 | Msa1289300:intron | 30.0% |
| ! | TTGGTTTGATACATTTAGCT+TGG | + | chr8_3:43156727-43156746 | Msa1289300:intron | 30.0% |
| !!! | ATTTAGCTTGGTGTTTTTGA+TGG | + | chr8_3:43156739-43156758 | Msa1289300:intron | 30.0% |
| ! | CACAAGATTCTAGAGAAAAT+AGG | + | chr8_3:43156775-43156794 | Msa1289300:intron | 30.0% |
| TAATCTAAACCTGTTTCAGA+TGG | - | chr8_3:43157105-43157124 | None:intergenic | 30.0% | |
| !!! | TTTTACAGAAAAGAGCATTC+TGG | + | chr8_3:43157144-43157163 | Msa1289300:intron | 30.0% |
| ! | AACTGAGCATTTAAAATCTC+TGG | - | chr8_3:43157786-43157805 | None:intergenic | 30.0% |
| GTGATTGTAAATTTGTGGTA+AGG | + | chr8_3:43157811-43157830 | Msa1289300:intron | 30.0% | |
| ! | GTTAGGTTTTTCTGTGAAAT+TGG | + | chr8_3:43157862-43157881 | Msa1289300:intron | 30.0% |
| ! | ATATTGGGGAAAAGGTTTTA+AGG | - | chr8_3:43158254-43158273 | None:intergenic | 30.0% |
| GGAAATAATTCTCAATGCAA+TGG | + | chr8_3:43158295-43158314 | Msa1289300:intron | 30.0% | |
| AATTCTCAATGCAATGGTTA+TGG | + | chr8_3:43158301-43158320 | Msa1289300:intron | 30.0% | |
| ATGAATTGTTGAAGCAGAAT+AGG | + | chr8_3:43158741-43158760 | Msa1289300:CDS | 30.0% | |
| ! | GAGTGTTTAGATTTGTTTGT+AGG | + | chr8_3:43159073-43159092 | Msa1289300:intron | 30.0% |
| !! | AAGCTAAGTTGATGTATCAT+AGG | - | chr8_3:43159149-43159168 | None:intergenic | 30.0% |
| AGTGACTATGACAATGTAAT+TGG | + | chr8_3:43159324-43159343 | Msa1289300:CDS | 30.0% | |
| TTTCTGCTTACTTTCAGATA+TGG | - | chr8_3:43159357-43159376 | None:intergenic | 30.0% | |
| TCTGAATTATGAATCTTGCA+TGG | + | chr8_3:43159403-43159422 | Msa1289300:intron | 30.0% | |
| AGACTTACAAATCCTTAAAC+AGG | - | chr8_3:43159430-43159449 | None:intergenic | 30.0% | |
| ! | CAAATGGTGTAAAAGCATAT+TGG | - | chr8_3:43159453-43159472 | None:intergenic | 30.0% |
| !!! | AGACTCACAATTTTTTTCCT+TGG | + | chr8_3:43159806-43159825 | Msa1289300:intron | 30.0% |
| AATTTCTGTCTCCTTTACTT+TGG | + | chr8_3:43160340-43160359 | Msa1289300:intron | 30.0% | |
| ! | GATTTGGTTTCTAAACCATA+AGG | - | chr8_3:43160709-43160728 | None:intergenic | 30.0% |
| TCATTTAAACTTACAGACAG+TGG | - | chr8_3:43160896-43160915 | None:intergenic | 30.0% | |
| ACATTAAATTCTCCAATACC+AGG | - | chr8_3:43161221-43161240 | None:intergenic | 30.0% | |
| TGAACATATATGTATACACG+TGG | - | chr8_3:43161284-43161303 | None:intergenic | 30.0% | |
| CGTGTATACATATATGTTCA+TGG | + | chr8_3:43161284-43161303 | Msa1289300:intron | 30.0% | |
| !! | CTCTGAGGAAATTTTGTATT+TGG | - | chr8_3:43161630-43161649 | None:intergenic | 30.0% |
| TGAAGAAACTGATGAAAAAG+AGG | + | chr8_3:43161735-43161754 | Msa1289300:three_prime_UTR | 30.0% | |
| GAAGAAACTGATGAAAAAGA+GGG | + | chr8_3:43161736-43161755 | Msa1289300:three_prime_UTR | 30.0% | |
| TTGTCAAATATGAACCAGTA+AGG | - | chr8_3:43161876-43161895 | None:intergenic | 30.0% | |
| ! | CATGTGTTGTGACATGTTTT+TGG | + | chr8_3:43156260-43156279 | Msa1289300:intron | 35.0% |
| !!! | GACATGTTTTTGGGTATGTT+TGG | + | chr8_3:43156270-43156289 | Msa1289300:intron | 35.0% |
| !!! | ATGTTTTTGGGTATGTTTGG+TGG | + | chr8_3:43156273-43156292 | Msa1289300:intron | 35.0% |
| TATTGCTGAAAATGTGTGTC+TGG | + | chr8_3:43156470-43156489 | Msa1289300:intron | 35.0% | |
| TGAGTAATTGAAGACTCTTG+TGG | + | chr8_3:43156555-43156574 | Msa1289300:intron | 35.0% | |
| !! | TGGTCTCATCATTTTTCTTG+AGG | + | chr8_3:43156649-43156668 | Msa1289300:intron | 35.0% |
| !! | GTGTTTTTGATGGTTACAGT+TGG | + | chr8_3:43156749-43156768 | Msa1289300:intron | 35.0% |
| !! | TCTGGTCTCATCATTTTTCT+TGG | + | chr8_3:43157052-43157071 | Msa1289300:intron | 35.0% |
| TAAAAATAAGGAAGACAGGG+AGG | - | chr8_3:43157224-43157243 | None:intergenic | 35.0% | |
| GCGTAAAAATAAGGAAGACA+GGG | - | chr8_3:43157227-43157246 | None:intergenic | 35.0% | |
| ! | TGAGCTTTGGCGTAAAAATA+AGG | - | chr8_3:43157236-43157255 | None:intergenic | 35.0% |
| !! | TATGTGTTGCTTATGAGCTT+TGG | - | chr8_3:43157249-43157268 | None:intergenic | 35.0% |
| AACTTCATGAGTACCAATCA+TGG | + | chr8_3:43157270-43157289 | Msa1289300:intron | 35.0% | |
| TGAATTGGGTGTTCTTATTG+AGG | + | chr8_3:43157561-43157580 | Msa1289300:intron | 35.0% | |
| AGATAGTGATCCTATGATAG+AGG | + | chr8_3:43157717-43157736 | Msa1289300:intron | 35.0% | |
| TGGATTTCTGACTATGCTAT+TGG | + | chr8_3:43157745-43157764 | Msa1289300:intron | 35.0% | |
| GGATTTCTGACTATGCTATT+GGG | + | chr8_3:43157746-43157765 | Msa1289300:intron | 35.0% | |
| ! | GACTTCAGTTACTTTCATCT+TGG | + | chr8_3:43157891-43157910 | Msa1289300:intron | 35.0% |
| AGCTGATAATCTGTGTTTCA+AGG | + | chr8_3:43157936-43157955 | Msa1289300:CDS | 35.0% | |
| AAGCATATTTATGCACCTCA+TGG | + | chr8_3:43158032-43158051 | Msa1289300:intron | 35.0% | |
| ! | TTTTTGCTACAGGTTCTACA+TGG | + | chr8_3:43158478-43158497 | Msa1289300:intron | 35.0% |
| ! | CAGCAGCATTAAACATCTTT+TGG | - | chr8_3:43158878-43158897 | None:intergenic | 35.0% |
| TTGTGTTTGTTCATGAAGGT+TGG | + | chr8_3:43159113-43159132 | Msa1289300:intron | 35.0% | |
| ! | GGAATTTTGAACTTCATTGG+TGG | + | chr8_3:43159570-43159589 | Msa1289300:intron | 35.0% |
| ! | CTTCAATGATTTGTGTATGG+AGG | + | chr8_3:43159888-43159907 | Msa1289300:intron | 35.0% |
| CATATAGTTGAAGAACTGGT+AGG | - | chr8_3:43159931-43159950 | None:intergenic | 35.0% | |
| !! | CACTTTTAGGTCATTGCTTT+AGG | + | chr8_3:43160094-43160113 | Msa1289300:intron | 35.0% |
| TGCAAATCAGGACAAACTAA+TGG | + | chr8_3:43160131-43160150 | Msa1289300:intron | 35.0% | |
| ! | GCATAAGCAGCTAATTCTTT+TGG | + | chr8_3:43160243-43160262 | Msa1289300:intron | 35.0% |
| AGAGTAATCAGCCAAAGTAA+AGG | - | chr8_3:43160354-43160373 | None:intergenic | 35.0% | |
| CTACAAGTGATGGTTATTGA+GGG | + | chr8_3:43160375-43160394 | Msa1289300:intron | 35.0% | |
| CATGTCATACTAATCTGTGT+TGG | + | chr8_3:43160441-43160460 | Msa1289300:intron | 35.0% | |
| ! | AAAGCTTCATGACATGGTTT+TGG | + | chr8_3:43160466-43160485 | Msa1289300:intron | 35.0% |
| ! | CTTTAGGTTCCTTTGTTATG+TGG | + | chr8_3:43160500-43160519 | Msa1289300:intron | 35.0% |
| GAGTGAAATCCACATAACAA+AGG | - | chr8_3:43160512-43160531 | None:intergenic | 35.0% | |
| GTTATGTGGATTTCACTCTT+TGG | + | chr8_3:43160514-43160533 | Msa1289300:CDS | 35.0% | |
| ! | TGATTTTCGCAACTTCCTTA+TGG | + | chr8_3:43160691-43160710 | Msa1289300:intron | 35.0% |
| TTCTCTATAGGTCTGCTTTA+CGG | + | chr8_3:43160762-43160781 | Msa1289300:intron | 35.0% | |
| GTCGTAACGAATATTTGCAT+AGG | - | chr8_3:43160807-43160826 | None:intergenic | 35.0% | |
| !!! | CTTTCTTTTTCAGAATGCCT+AGG | + | chr8_3:43161185-43161204 | Msa1289300:CDS | 35.0% |
| TGTATCCTGCATATTGTTTC+AGG | + | chr8_3:43161312-43161331 | Msa1289300:intron | 35.0% | |
| GAAATTGTTCCATCATACCT+CGG | - | chr8_3:43161431-43161450 | None:intergenic | 35.0% | |
| !! | AATGAACTTGCTACATGCCA+TGG | + | chr8_3:43156087-43156106 | Msa1289300:five_prime_UTR | 40.0% |
| TACATGCCATGGTGAAATCA+AGG | + | chr8_3:43156098-43156117 | Msa1289300:five_prime_UTR | 40.0% | |
| TTACGACCTTGATTTCACCA+TGG | - | chr8_3:43156107-43156126 | None:intergenic | 40.0% | |
| ATGGTGAAATCAAGGTCGTA+AGG | + | chr8_3:43156106-43156125 | Msa1289300:five_prime_UTR | 40.0% | |
| TGGTGAAATCAAGGTCGTAA+GGG | + | chr8_3:43156107-43156126 | Msa1289300:five_prime_UTR | 40.0% | |
| GAAAGATAAGGCCATAGAAG+AGG | + | chr8_3:43156143-43156162 | Msa1289300:five_prime_UTR | 40.0% | |
| !! | GGCCATAGAAGAGGTATTAA+TGG | + | chr8_3:43156152-43156171 | Msa1289300:exon | 40.0% |
| ACTAAGCCACCATACTTACA+AGG | + | chr8_3:43156180-43156199 | Msa1289300:CDS | 40.0% | |
| TTTCAGATGGATCGTTCTAG+AGG | - | chr8_3:43157092-43157111 | None:intergenic | 40.0% | |
| ! | TAGAACGATCCATCTGAAAC+AGG | + | chr8_3:43157093-43157112 | Msa1289300:intron | 40.0% |
| GGCGTAAAAATAAGGAAGAC+AGG | - | chr8_3:43157228-43157247 | None:intergenic | 40.0% | |
| ATGGCAGACAGATGCATATA+AGG | - | chr8_3:43157485-43157504 | None:intergenic | 40.0% | |
| TAGTGATCCTATGATAGAGG+TGG | + | chr8_3:43157720-43157739 | Msa1289300:intron | 40.0% | |
| ATCCTATGATAGAGGTGGTT+TGG | + | chr8_3:43157725-43157744 | Msa1289300:intron | 40.0% | |
| ATCCAAACCACCTCTATCAT+AGG | - | chr8_3:43157730-43157749 | None:intergenic | 40.0% | |
| AGAATGACCTCACGAACAAT+TGG | - | chr8_3:43157837-43157856 | None:intergenic | 40.0% | |
| TGAGGTCATTCTCAAAGGTT+AGG | + | chr8_3:43157845-43157864 | Msa1289300:intron | 40.0% | |
| ! | TCAGTTACTTTCATCTTGGC+AGG | + | chr8_3:43157895-43157914 | Msa1289300:intron | 40.0% |
| ! | CAGTTACTTTCATCTTGGCA+GGG | + | chr8_3:43157896-43157915 | Msa1289300:intron | 40.0% |
| TTGCTACACTCACATACCTT+TGG | + | chr8_3:43157987-43158006 | Msa1289300:intron | 40.0% | |
| ATACCTTTGGATCACTTGCA+AGG | + | chr8_3:43158000-43158019 | Msa1289300:intron | 40.0% | |
| TATCCTTGCAAGTGATCCAA+AGG | - | chr8_3:43158006-43158025 | None:intergenic | 40.0% | |
| !!! | AAGGTTTTAAGGCAAGCAAC+TGG | - | chr8_3:43158243-43158262 | None:intergenic | 40.0% |
| TGGAACTGATATTGGGGAAA+AGG | - | chr8_3:43158262-43158281 | None:intergenic | 40.0% | |
| CTGTGTTGGAACTGATATTG+GGG | - | chr8_3:43158268-43158287 | None:intergenic | 40.0% | |
| GCTGTGTTGGAACTGATATT+GGG | - | chr8_3:43158269-43158288 | None:intergenic | 40.0% | |
| TGCTGTGTTGGAACTGATAT+TGG | - | chr8_3:43158270-43158289 | None:intergenic | 40.0% | |
| TATTTCCCTGATTGCTGTGT+TGG | - | chr8_3:43158282-43158301 | None:intergenic | 40.0% | |
| ! | CAACTTTCAGCTTTTTGTCG+TGG | + | chr8_3:43158431-43158450 | Msa1289300:intron | 40.0% |
| TGAACAAAAGGATGGATCAG+TGG | + | chr8_3:43158574-43158593 | Msa1289300:intron | 40.0% | |
| TTGTGCACACAGAACCAAAA+GGG | - | chr8_3:43158690-43158709 | None:intergenic | 40.0% | |
| CTGTGTCTGCTAATGACAAT+AGG | + | chr8_3:43158711-43158730 | Msa1289300:CDS | 40.0% | |
| GGCAAGCAGAGATAAAAACT+TGG | - | chr8_3:43158917-43158936 | None:intergenic | 40.0% | |
| ATCTTGCATGGTCCTGTTTA+AGG | + | chr8_3:43159415-43159434 | Msa1289300:intron | 40.0% | |
| ! | ACTTCATTGGTGGTTGAAGT+AGG | + | chr8_3:43159580-43159599 | Msa1289300:intron | 40.0% |
| GTGAGTCTTCACATACACTA+AGG | - | chr8_3:43159794-43159813 | None:intergenic | 40.0% | |
| ! | CTAGATGGCATTCACCTTTT+AGG | + | chr8_3:43160019-43160038 | Msa1289300:intron | 40.0% |
| ! | AACCATGCTGACTACCTAAA+AGG | - | chr8_3:43160036-43160055 | None:intergenic | 40.0% |
| GATTACTCTGCTACAAGTGA+TGG | + | chr8_3:43160365-43160384 | Msa1289300:intron | 40.0% | |
| GCTACAAGTGATGGTTATTG+AGG | + | chr8_3:43160374-43160393 | Msa1289300:intron | 40.0% | |
| TTGGTGAAAGCTTCATGACA+TGG | + | chr8_3:43160460-43160479 | Msa1289300:intron | 40.0% | |
| GAATATTTGCATAGGCAACG+CGG | - | chr8_3:43160799-43160818 | None:intergenic | 40.0% | |
| TGAGCTACTGATAGACATTG+AGG | + | chr8_3:43161130-43161149 | Msa1289300:CDS | 40.0% | |
| CTACTGATAGACATTGAGGT+AGG | + | chr8_3:43161134-43161153 | Msa1289300:CDS | 40.0% | |
| ATAGACATTGAGGTAGGACT+TGG | + | chr8_3:43161140-43161159 | Msa1289300:CDS | 40.0% | |
| GATATCTAAGTTCTCCAGCA+GGG | - | chr8_3:43161166-43161185 | None:intergenic | 40.0% | |
| AGATATCTAAGTTCTCCAGC+AGG | - | chr8_3:43161167-43161186 | None:intergenic | 40.0% | |
| !! | TTTTTCAGAATGCCTAGGCT+GGG | + | chr8_3:43161190-43161209 | Msa1289300:CDS | 40.0% |
| GCTTTACTCATGATGCTGAA+AGG | + | chr8_3:43161365-43161384 | Msa1289300:CDS | 40.0% | |
| AAATTGGAAATGCAAGGGAC+AGG | + | chr8_3:43161516-43161535 | Msa1289300:intron | 40.0% | |
| CGCTTATGGTGACATCATAA+GGG | - | chr8_3:43161561-43161580 | None:intergenic | 40.0% | |
| CCTTATGATGTCACCATAAG+CGG | + | chr8_3:43161559-43161578 | Msa1289300:CDS | 40.0% | |
| ! | TCTCAATCCTCGAGCTTTTA+AGG | - | chr8_3:43161655-43161674 | None:intergenic | 40.0% |
| CTTCAAATAGTCAGCCATTC+TGG | - | chr8_3:43161686-43161705 | None:intergenic | 40.0% | |
| ! | AATGGCTGACTATTTGAAGC+AGG | + | chr8_3:43161687-43161706 | Msa1289300:three_prime_UTR | 40.0% |
| ! | TATTTGAAGCAGGATGGCAA+AGG | + | chr8_3:43161697-43161716 | Msa1289300:three_prime_UTR | 40.0% |
| AAGCTTAATAGCAGCCTTAC+TGG | + | chr8_3:43161859-43161878 | Msa1289300:three_prime_UTR | 40.0% | |
| GAAGACAGGGAGGAATATCA+AGG | - | chr8_3:43157214-43157233 | None:intergenic | 45.0% | |
| GTTCGTGAGGTCATTCTCAA+AGG | + | chr8_3:43157840-43157859 | Msa1289300:intron | 45.0% | |
| ! | GCAGGGAGAACAAGCTTTAT+TGG | + | chr8_3:43157913-43157932 | Msa1289300:intron | 45.0% |
| AAGGCAAGCAACTGGTTACA+TGG | - | chr8_3:43158235-43158254 | None:intergenic | 45.0% | |
| TCAGTTCCAACACAGCAATC+AGG | + | chr8_3:43158273-43158292 | Msa1289300:intron | 45.0% | |
| CAGTTCCAACACAGCAATCA+GGG | + | chr8_3:43158274-43158293 | Msa1289300:intron | 45.0% | |
| CTCTTGCAATCGCTTCTAGA+TGG | - | chr8_3:43158327-43158346 | None:intergenic | 45.0% | |
| TTGCGTGCTGAACAAAAGGA+TGG | + | chr8_3:43158566-43158585 | Msa1289300:intron | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | + | chr8_3:43158577-43158596 | Msa1289300:intron | 45.0% | |
| !! | ACACAGGTTGGTGAACTTGA+TGG | + | chr8_3:43158608-43158627 | Msa1289300:CDS | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | + | chr8_3:43158612-43158631 | Msa1289300:CDS | 45.0% |
| AAGGCACGTTCGAAGAAACA+AGG | + | chr8_3:43158635-43158654 | Msa1289300:CDS | 45.0% | |
| AGGCACGTTCGAAGAAACAA+GGG | + | chr8_3:43158636-43158655 | Msa1289300:CDS | 45.0% | |
| GAAGAAACAAGGGAGGAAGA+GGG | + | chr8_3:43158646-43158665 | Msa1289300:CDS | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | + | chr8_3:43158663-43158682 | Msa1289300:CDS | 45.0% | |
| ! | TGTGGATTTGAGGACCCTTT+TGG | + | chr8_3:43158673-43158692 | Msa1289300:CDS | 45.0% |
| CTTGTGCACACAGAACCAAA+AGG | - | chr8_3:43158691-43158710 | None:intergenic | 45.0% | |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | + | chr8_3:43158761-43158780 | Msa1289300:CDS | 45.0% |
| AGGTGATGCATCACAGAGAA+TGG | + | chr8_3:43158781-43158800 | Msa1289300:CDS | 45.0% | |
| !! | AGGTGGTTTTTGCCACTTGA+AGG | + | chr8_3:43159501-43159520 | Msa1289300:intron | 45.0% |
| !! | TGGTTTTTGCCACTTGAAGG+TGG | + | chr8_3:43159504-43159523 | Msa1289300:intron | 45.0% |
| !! | CACCTTTTAGGTAGTCAGCA+TGG | + | chr8_3:43160031-43160050 | Msa1289300:intron | 45.0% |
| AAACAGCATCTCGTCTTTCG+CGG | + | chr8_3:43160540-43160559 | Msa1289300:CDS | 45.0% | |
| TCGCGGTTTCTTGGTAAAAC+AGG | + | chr8_3:43160557-43160576 | Msa1289300:CDS | 45.0% | |
| CGCGGTTTCTTGGTAAAACA+GGG | + | chr8_3:43160558-43160577 | Msa1289300:CDS | 45.0% | |
| !!! | CTTTTTCAGAATGCCTAGGC+TGG | + | chr8_3:43161189-43161208 | Msa1289300:CDS | 45.0% |
| AGCAGCCTGAAACAATATGC+AGG | - | chr8_3:43161320-43161339 | None:intergenic | 45.0% | |
| ! | CAGTCTTATAAGCGTGTACG+TGG | + | chr8_3:43161397-43161416 | Msa1289300:CDS | 45.0% |
| TATGGTGACATCATAAGGGC+TGG | - | chr8_3:43161557-43161576 | None:intergenic | 45.0% | |
| CCGCTTATGGTGACATCATA+AGG | - | chr8_3:43161562-43161581 | None:intergenic | 45.0% | |
| ATATCTGGCCTCACTAATCC+TGG | - | chr8_3:43161590-43161609 | None:intergenic | 45.0% | |
| GCCAGATATCATGCATGAGA+GGG | + | chr8_3:43161601-43161620 | Msa1289300:exon | 45.0% | |
| TCCCTCTCATGCATGATATC+TGG | - | chr8_3:43161605-43161624 | None:intergenic | 45.0% | |
| !! | CGAGCTTTTAAGGATCTCTG+AGG | - | chr8_3:43161645-43161664 | None:intergenic | 45.0% |
| CAGAGATCCTTAAAAGCTCG+AGG | + | chr8_3:43161645-43161664 | Msa1289300:three_prime_UTR | 45.0% | |
| TTGAGATTCCAGAGCCAGAA+TGG | + | chr8_3:43161669-43161688 | Msa1289300:three_prime_UTR | 45.0% | |
| ! | GCTGACTATTTGAAGCAGGA+TGG | + | chr8_3:43161691-43161710 | Msa1289300:three_prime_UTR | 45.0% |
| !! | AAAAAAAAAATATTGAAATA+TGG | - | chr8_3:43159172-43159191 | None:intergenic | 5.0% |
| !!! | CAATATTTTTTTTTTATTTA+TGG | + | chr8_3:43159177-43159196 | Msa1289300:intron | 5.0% |
| GGTAAGGCCAATTGTTCGTG+AGG | + | chr8_3:43157827-43157846 | Msa1289300:intron | 50.0% | |
| CAGGTTCTACATGGTGCATC+TGG | + | chr8_3:43158487-43158506 | Msa1289300:intron | 50.0% | |
| GTCGTTGCGTGCTGAACAAA+AGG | + | chr8_3:43158562-43158581 | Msa1289300:intron | 50.0% | |
| ! | AGTGGTGGAGAGTAGAACAC+AGG | + | chr8_3:43158592-43158611 | Msa1289300:CDS | 50.0% |
| GTGGAGAGTAGAACACAGGT+TGG | + | chr8_3:43158596-43158615 | Msa1289300:CDS | 50.0% | |
| !! | CAGGTTGGTGAACTTGATGG+AGG | + | chr8_3:43158611-43158630 | Msa1289300:CDS | 50.0% |
| TGGTGAACTTGATGGAGGGA+AGG | + | chr8_3:43158616-43158635 | Msa1289300:CDS | 50.0% | |
| CACGTTCGAAGAAACAAGGG+AGG | + | chr8_3:43158639-43158658 | Msa1289300:CDS | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | + | chr8_3:43158645-43158664 | Msa1289300:CDS | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | - | chr8_3:43158779-43158798 | None:intergenic | 50.0% | |
| ATGCGATTGAAGCGCATGGT+TGG | + | chr8_3:43158819-43158838 | Msa1289300:CDS | 50.0% | |
| TGCGATTGAAGCGCATGGTT+GGG | + | chr8_3:43158820-43158839 | Msa1289300:CDS | 50.0% | |
| TCCTTGAGACCACCTTCAAG+TGG | - | chr8_3:43159516-43159535 | None:intergenic | 50.0% | |
| TGAAGGTGGTCTCAAGGACA+AGG | + | chr8_3:43159518-43159537 | Msa1289300:intron | 50.0% | |
| GCTTATGCCCTCTACAACCA+AGG | - | chr8_3:43160231-43160250 | None:intergenic | 50.0% | |
| TCTCGTCTTTCGCGGTTTCT+TGG | + | chr8_3:43160548-43160567 | Msa1289300:CDS | 50.0% | |
| ACCTCCTCTTCTTCTCCAGA+TGG | + | chr8_3:43160616-43160635 | Msa1289300:CDS | 50.0% | |
| ACCATCTGGAGAAGAAGAGG+AGG | - | chr8_3:43160620-43160639 | None:intergenic | 50.0% | |
| CGAACCATCTGGAGAAGAAG+AGG | - | chr8_3:43160623-43160642 | None:intergenic | 50.0% | |
| !! | CTTTGGAGTCACGAACCATC+TGG | - | chr8_3:43160634-43160653 | None:intergenic | 50.0% |
| ATAGGCAACGCGGAGTTTGA+AGG | - | chr8_3:43160789-43160808 | None:intergenic | 50.0% | |
| TACCAGGAAATACCCAGCCT+AGG | - | chr8_3:43161205-43161224 | None:intergenic | 50.0% | |
| GGCTGGGTATTTCCTGGTAT+TGG | + | chr8_3:43161206-43161225 | Msa1289300:CDS | 50.0% | |
| CTTATAAGCGTGTACGTGGC+AGG | + | chr8_3:43161401-43161420 | Msa1289300:CDS | 50.0% | |
| AATCCTGGACTCACCGCTTA+TGG | - | chr8_3:43161575-43161594 | None:intergenic | 50.0% | |
| GGCCAGATATCATGCATGAG+AGG | + | chr8_3:43161600-43161619 | Msa1289300:exon | 50.0% | |
| !! | ATAGTCAGCCATTCTGGCTC+TGG | - | chr8_3:43161680-43161699 | None:intergenic | 50.0% |
| AGGGAGGAAGAGGGATGTTG+TGG | + | chr8_3:43158655-43158674 | Msa1289300:CDS | 55.0% | |
| GCGAATGCGATTGAAGCGCA+TGG | + | chr8_3:43158815-43158834 | Msa1289300:CDS | 55.0% | |
| GCGATTGAAGCGCATGGTTG+GGG | + | chr8_3:43158821-43158840 | Msa1289300:CDS | 55.0% | |
| GCCACTTGAAGGTGGTCTCA+AGG | + | chr8_3:43159512-43159531 | Msa1289300:intron | 55.0% | |
| CTACCAGCCAACAAGCTTGC+AGG | + | chr8_3:43160166-43160185 | Msa1289300:intron | 55.0% | |
| !! | AGTCCTGCAAGCTTGTTGGC+TGG | - | chr8_3:43160172-43160191 | None:intergenic | 55.0% |
| AGCCAACAAGCTTGCAGGAC+TGG | + | chr8_3:43160171-43160190 | Msa1289300:intron | 55.0% | |
| CTCCAGTCCTGCAAGCTTGT+TGG | - | chr8_3:43160176-43160195 | None:intergenic | 55.0% | |
| TGCCCTCTACAACCAAGGTG+CGG | - | chr8_3:43160226-43160245 | None:intergenic | 55.0% | |
| TGCCTAGGCTGGGTATTTCC+TGG | + | chr8_3:43161200-43161219 | Msa1289300:CDS | 55.0% | |
| ! | GCAGGTTGACCGAGGTATGA+TGG | + | chr8_3:43161419-43161438 | Msa1289300:intron | 55.0% |
| ! | ATAAGGGCTGGTGCACCTAC+TGG | - | chr8_3:43161545-43161564 | None:intergenic | 55.0% |
| TCACCATAAGCGGTGAGTCC+AGG | + | chr8_3:43161569-43161588 | Msa1289300:CDS | 55.0% | |
| ! | CGGTGAGTCCAGGATTAGTG+AGG | + | chr8_3:43161579-43161598 | Msa1289300:CDS | 55.0% |
| TTGAAGCGCATGGTTGGGGC+TGG | + | chr8_3:43158825-43158844 | Msa1289300:CDS | 60.0% | |
| ACGTCTGTAACGCCGCACCT+TGG | + | chr8_3:43160211-43160230 | Msa1289300:intron | 60.0% | |
| ACGCCGCACCTTGGTTGTAG+AGG | + | chr8_3:43160220-43160239 | Msa1289300:intron | 60.0% | |
| CGCCGCACCTTGGTTGTAGA+GGG | + | chr8_3:43160221-43160240 | Msa1289300:intron | 60.0% | |
| ! | TGTACGTGGCAGGTTGACCG+AGG | + | chr8_3:43161411-43161430 | Msa1289300:CDS | 60.0% |
| GCAAGGGACAGGCTTCCAGT+AGG | + | chr8_3:43161527-43161546 | Msa1289300:intron | 60.0% | |
| GAGGTAGGACTTGGCCCTGC+TGG | + | chr8_3:43161149-43161168 | Msa1289300:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 43156059 | 43161924 | 43156059 | ID=Msa1289300;Name=Msa1289300 |
| chr8_3 | mRNA | 43156059 | 43161924 | 43156059 | ID=Msa1289300-mRNA-1;Parent=Msa1289300;Name=Msa1289300-mRNA-1;_AED=0.29;_eAED=0.43;_QI=112|0.12|0.44|0.88|1|1|9|306|343 |
| chr8_3 | exon | 43156059 | 43156201 | 43156059 | ID=Msa1289300-mRNA-1:exon:11780;Parent=Msa1289300-mRNA-1 |
| chr8_3 | exon | 43156893 | 43157006 | 43156893 | ID=Msa1289300-mRNA-1:exon:11781;Parent=Msa1289300-mRNA-1 |
| chr8_3 | exon | 43157917 | 43157963 | 43157917 | ID=Msa1289300-mRNA-1:exon:11782;Parent=Msa1289300-mRNA-1 |
| chr8_3 | exon | 43158584 | 43158883 | 43158584 | ID=Msa1289300-mRNA-1:exon:11783;Parent=Msa1289300-mRNA-1 |
| chr8_3 | exon | 43159309 | 43159365 | 43159309 | ID=Msa1289300-mRNA-1:exon:11784;Parent=Msa1289300-mRNA-1 |
| chr8_3 | exon | 43160506 | 43160637 | 43160506 | ID=Msa1289300-mRNA-1:exon:11785;Parent=Msa1289300-mRNA-1 |
| chr8_3 | exon | 43161074 | 43161238 | 43161074 | ID=Msa1289300-mRNA-1:exon:11786;Parent=Msa1289300-mRNA-1 |
| chr8_3 | exon | 43161334 | 43161432 | 43161334 | ID=Msa1289300-mRNA-1:exon:11787;Parent=Msa1289300-mRNA-1 |
| chr8_3 | exon | 43161532 | 43161924 | 43161532 | ID=Msa1289300-mRNA-1:exon:11788;Parent=Msa1289300-mRNA-1 |
| chr8_3 | five_prime_UTR | 43156059 | 43156170 | 43156059 | ID=Msa1289300-mRNA-1:five_prime_utr;Parent=Msa1289300-mRNA-1 |
| chr8_3 | CDS | 43156171 | 43156201 | 43156171 | ID=Msa1289300-mRNA-1:cds;Parent=Msa1289300-mRNA-1 |
| chr8_3 | CDS | 43156893 | 43157006 | 43156893 | ID=Msa1289300-mRNA-1:cds;Parent=Msa1289300-mRNA-1 |
| chr8_3 | CDS | 43157917 | 43157963 | 43157917 | ID=Msa1289300-mRNA-1:cds;Parent=Msa1289300-mRNA-1 |
| chr8_3 | CDS | 43158584 | 43158883 | 43158584 | ID=Msa1289300-mRNA-1:cds;Parent=Msa1289300-mRNA-1 |
| chr8_3 | CDS | 43159309 | 43159365 | 43159309 | ID=Msa1289300-mRNA-1:cds;Parent=Msa1289300-mRNA-1 |
| chr8_3 | CDS | 43160506 | 43160637 | 43160506 | ID=Msa1289300-mRNA-1:cds;Parent=Msa1289300-mRNA-1 |
| chr8_3 | CDS | 43161074 | 43161238 | 43161074 | ID=Msa1289300-mRNA-1:cds;Parent=Msa1289300-mRNA-1 |
| chr8_3 | CDS | 43161334 | 43161432 | 43161334 | ID=Msa1289300-mRNA-1:cds;Parent=Msa1289300-mRNA-1 |
| chr8_3 | CDS | 43161532 | 43161618 | 43161532 | ID=Msa1289300-mRNA-1:cds;Parent=Msa1289300-mRNA-1 |
| chr8_3 | three_prime_UTR | 43161619 | 43161924 | 43161619 | ID=Msa1289300-mRNA-1:three_prime_utr;Parent=Msa1289300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
