AlfalfaGEDB | Msa0993740

M. sativa cultivar zhongmu-4 / Msa0993740

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993740	XP_013442804.1	96.471	170	5	1	1	170	4	172	3.16e-114	338

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993740	sp\|Q0WUQ1\|BAG1_ARATH	70.000	140	41	1	32	170	39	178	6.92e-63	200

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993740	A0A072TGZ0	96.471	170	5	1	1	170	4	172	1.51e-114	338

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036890	Msa0993740	0.814954	1.184209e-51	-8.615850e-47
Msa0052870	Msa0993740	0.816717	4.789887e-52	-8.615850e-47
Msa0071100	Msa0993740	0.816420	5.580677e-52	-8.615850e-47
Msa0084970	Msa0993740	0.835903	1.279858e-56	-8.615850e-47
Msa0101340	Msa0993740	0.818875	1.560025e-52	-8.615850e-47
Msa0133720	Msa0993740	0.801599	8.345059e-49	-8.615850e-47
Msa0133820	Msa0993740	0.803877	2.826687e-49	-8.615850e-47
Msa0134000	Msa0993740	0.818935	1.511447e-52	-8.615850e-47
Msa0145680	Msa0993740	0.806652	7.413704e-50	-8.615850e-47
Msa0162440	Msa0993740	0.817218	3.696711e-52	-8.615850e-47

Showing 1 to 10 of 21 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993740	MtrunA17_Chr6g0473621	96.471	170	5	1	1	170	4	172	2.91e-118	338
Msa0993740	MtrunA17_Chr1g0203771	78.231	147	32	0	21	167	11	157	1.03e-81	244
Msa0993740	MtrunA17_Chr4g0057261	56.757	148	62	1	20	167	20	165	7.46e-53	169
Msa0993740	MtrunA17_Chr2g0285591	44.720	161	84	2	7	167	7	162	2.07e-44	146
Msa0993740	MtrunA17_Chr7g0243051	41.176	153	87	2	16	167	3	153	4.26e-33	117
Msa0993740	MtrunA17_Chr6g0458271	41.727	139	75	4	15	153	23	155	6.02e-29	104
Msa0993740	MtrunA17_Chr6g0458281	37.857	140	78	2	15	154	23	153	5.89e-27	99.4
Msa0993740	MtrunA17_Chr4g0007601	45.946	111	60	0	57	167	27	137	1.02e-26	101

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993740	AT5G52060.1	70.000	140	41	1	32	170	39	178	7.03e-64	200
Msa0993740	AT5G62100.3	64.748	139	46	1	29	167	12	147	2.23e-61	187
Msa0993740	AT5G62100.6	64.748	139	46	1	29	167	12	147	2.23e-61	187
Msa0993740	AT5G07220.1	61.146	157	54	2	14	170	7	156	2.72e-61	192
Msa0993740	AT5G62100.5	62.676	142	50	1	29	170	12	150	1.26e-60	187
Msa0993740	AT5G62100.4	62.676	142	50	1	29	170	12	150	1.45e-60	187
Msa0993740	AT5G62100.2	62.676	142	50	1	29	170	12	150	7.60e-59	185
Msa0993740	AT5G62100.1	62.676	142	50	1	29	170	12	150	1.39e-58	185
Msa0993740	AT3G51780.1	41.060	151	70	5	32	167	10	156	1.78e-26	101
Msa0993740	AT5G14360.1	41.818	110	59	1	31	140	47	151	1.63e-23	91.3

Showing 1 to 10 of 11 entries

Previous1 2Next

Find 40 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTGTCAGGACCAAC+TGG	0.440623	6_4:+66821770	Msa0993740:CDS
AAGTAGATAGGCTTGCCGGA+CGG	0.614233	6_4:+66821993	Msa0993740:CDS
AGACAAAGAGAGGGATTCTA+AGG	0.387250	6_4:+66821826	Msa0993740:CDS
AGATTAGCTTGGAAGTAGAT+AGG	0.410787	6_4:+66821981	Msa0993740:CDS
AGGGTTACGATTTGAATCAG+TGG	0.610632	6_4:-66821247	None:intergenic
AGGTGGTTGCAGAGCTGAAC+CGG	0.333790	6_4:+66821173	Msa0993740:CDS
AGTAGATAGGCTTGCCGGAC+GGG	0.466043	6_4:+66821994	Msa0993740:CDS
ATCCTATTAGTCAAGAGAAA+AGG	0.488781	6_4:+66821903	Msa0993740:CDS
ATCTATCTCACAGATTAGCT+TGG	0.490471	6_4:+66821970	Msa0993740:CDS
ATCTCCCATTCCATTGAACC+CGG	0.567397	6_4:-66821192	None:intergenic

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTGAAAAGATTTACCAAATG+TGG	-	chr6_4:66821346-66821365	None:intergenic	30.0%
TGTCAAATTATTAGCTGTGT+CGG	+	chr6_4:66821456-66821475	Msa0993740:intron	30.0%
TCAAAAATCGTAATGAAGCA+TGG	-	chr6_4:66821505-66821524	None:intergenic	30.0%
TCGAGTTTAAATCTTAACTC+AGG	-	chr6_4:66821580-66821599	None:intergenic	30.0%
GATTTGAAGAAAATGTTGTC+AGG	+	chr6_4:66821761-66821780	Msa0993740:CDS	30.0%
ATCCTATTAGTCAAGAGAAA+AGG	+	chr6_4:66821903-66821922	Msa0993740:CDS	30.0%
GTGAAAAGATTTACCAAATG+TGG	-	chr6_4:66821346-66821365	None:intergenic	30.0%
TGTCAAATTATTAGCTGTGT+CGG	+	chr6_4:66821456-66821475	Msa0993740:intron	30.0%
TCAAAAATCGTAATGAAGCA+TGG	-	chr6_4:66821505-66821524	None:intergenic	30.0%
TCGAGTTTAAATCTTAACTC+AGG	-	chr6_4:66821580-66821599	None:intergenic	30.0%

Showing 1 to 10 of 130 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	66821111	66822033	66821111	ID=Msa0993740;Name=Msa0993740
chr6_4	mRNA	66821111	66822033	66821111	ID=Msa0993740-mRNA-1;Parent=Msa0993740;Name=Msa0993740-mRNA-1;_AED=0.14;_eAED=0.16;_QI=0\|0\|0\|1\|1\|0.5\|2\|0\|171
chr6_4	exon	66821111	66821351	66821111	ID=Msa0993740-mRNA-1:exon:12459;Parent=Msa0993740-mRNA-1
chr6_4	exon	66821759	66822033	66821759	ID=Msa0993740-mRNA-1:exon:12460;Parent=Msa0993740-mRNA-1
chr6_4	CDS	66821111	66821351	66821111	ID=Msa0993740-mRNA-1:cds;Parent=Msa0993740-mRNA-1
chr6_4	CDS	66821759	66822033	66821759	ID=Msa0993740-mRNA-1:cds;Parent=Msa0993740-mRNA-1

Gene Sequence

>Msa0993740

ATGAGGAATAATCATAATCATGGTAATAATAAGACAAATGGTGTTTCTTCACCTATAAGCTCAGGTGGTTGCAGAGCTGAACCGGGTTCAATGGAATGGGAGATGAGGCCAGGTGGAATGTTGGTTCAAACAAGAACCACTGATTCAAATCGTAACCCTGCTTTGGTTCCTACAATTAGAGTTAGGGTCAAGTTTGGTTCAATTTATCATGAAGTCAATATTAGTTCACAAGCCACATTTGGGGATTTGAAGAAAATGTTGTCAGGACCAACTGGTTTACATCATCAAGATCAAAAGTTGTTTTACAAAGACAAAGAGAGGGATTCTAAGGCTTTTCTTGATGTAGTTGGTGTAAAGGACAAATCTAAACTAGTTCTTGTGGAAGATCCTATTAGTCAAGAGAAAAGGATTTTGGAATTGAGGAAGAATGCTAAGATGGAGAAAGCTGCAAAATCTATCTCACAGATTAGCTTGGAAGTAGATAGGCTTGCCGGACGGGTACGTGTTTACGTCTGA

Protein sequence

>Msa0993740

MRNNHNHGNNKTNGVSSPISSGGCRAEPGSMEWEMRPGGMLVQTRTTDSNRNPALVPTIRVRVKFGSIYHEVNISSQATFGDLKKMLSGPTGLHHQDQKLFYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRILELRKNAKMEKAAKSISQISLEVDRLAGRVRVYV*