Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993740 | XP_013442804.1 | 96.471 | 170 | 5 | 1 | 1 | 170 | 4 | 172 | 3.16e-114 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993740 | sp|Q0WUQ1|BAG1_ARATH | 70.000 | 140 | 41 | 1 | 32 | 170 | 39 | 178 | 6.92e-63 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993740 | A0A072TGZ0 | 96.471 | 170 | 5 | 1 | 1 | 170 | 4 | 172 | 1.51e-114 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036890 | Msa0993740 | 0.814954 | 1.184209e-51 | -8.615850e-47 |
| Msa0052870 | Msa0993740 | 0.816717 | 4.789887e-52 | -8.615850e-47 |
| Msa0071100 | Msa0993740 | 0.816420 | 5.580677e-52 | -8.615850e-47 |
| Msa0084970 | Msa0993740 | 0.835903 | 1.279858e-56 | -8.615850e-47 |
| Msa0101340 | Msa0993740 | 0.818875 | 1.560025e-52 | -8.615850e-47 |
| Msa0706760 | Msa0993740 | 0.808153 | 3.561642e-50 | -8.615850e-47 |
| Msa0133720 | Msa0993740 | 0.801599 | 8.345059e-49 | -8.615850e-47 |
| Msa0133820 | Msa0993740 | 0.803877 | 2.826687e-49 | -8.615850e-47 |
| Msa0134000 | Msa0993740 | 0.818935 | 1.511447e-52 | -8.615850e-47 |
| Msa0145680 | Msa0993740 | 0.806652 | 7.413704e-50 | -8.615850e-47 |
| Msa0162440 | Msa0993740 | 0.817218 | 3.696711e-52 | -8.615850e-47 |
| Msa0176900 | Msa0993740 | 0.829154 | 6.031521e-55 | -8.615850e-47 |
| Msa0181000 | Msa0993740 | 0.800254 | 1.571118e-48 | -8.615850e-47 |
| Msa0210620 | Msa0993740 | 0.816269 | 6.032509e-52 | -8.615850e-47 |
| Msa0230370 | Msa0993740 | 0.820791 | 5.689450e-53 | -8.615850e-47 |
| Msa0992030 | Msa0993740 | 0.857865 | 1.219507e-62 | -8.615850e-47 |
| Msa0993740 | Msa0993760 | 0.878251 | 3.267025e-69 | -8.615850e-47 |
| Msa0993740 | Msa1085330 | 0.824992 | 5.975893e-54 | -8.615850e-47 |
| Msa0307570 | Msa0993740 | 0.816063 | 6.708975e-52 | -8.615850e-47 |
| Msa0327750 | Msa0993740 | 0.802449 | 5.580516e-49 | -8.615850e-47 |
| Msa0929090 | Msa0993740 | 0.853481 | 2.322502e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993740 | MtrunA17_Chr6g0473621 | 96.471 | 170 | 5 | 1 | 1 | 170 | 4 | 172 | 2.91e-118 | 338 |
| Msa0993740 | MtrunA17_Chr1g0203771 | 78.231 | 147 | 32 | 0 | 21 | 167 | 11 | 157 | 1.03e-81 | 244 |
| Msa0993740 | MtrunA17_Chr4g0057261 | 56.757 | 148 | 62 | 1 | 20 | 167 | 20 | 165 | 7.46e-53 | 169 |
| Msa0993740 | MtrunA17_Chr2g0285591 | 44.720 | 161 | 84 | 2 | 7 | 167 | 7 | 162 | 2.07e-44 | 146 |
| Msa0993740 | MtrunA17_Chr7g0243051 | 41.176 | 153 | 87 | 2 | 16 | 167 | 3 | 153 | 4.26e-33 | 117 |
| Msa0993740 | MtrunA17_Chr6g0458271 | 41.727 | 139 | 75 | 4 | 15 | 153 | 23 | 155 | 6.02e-29 | 104 |
| Msa0993740 | MtrunA17_Chr6g0458281 | 37.857 | 140 | 78 | 2 | 15 | 154 | 23 | 153 | 5.89e-27 | 99.4 |
| Msa0993740 | MtrunA17_Chr4g0007601 | 45.946 | 111 | 60 | 0 | 57 | 167 | 27 | 137 | 1.02e-26 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993740 | AT5G52060.1 | 70.000 | 140 | 41 | 1 | 32 | 170 | 39 | 178 | 7.03e-64 | 200 |
| Msa0993740 | AT5G62100.3 | 64.748 | 139 | 46 | 1 | 29 | 167 | 12 | 147 | 2.23e-61 | 187 |
| Msa0993740 | AT5G62100.6 | 64.748 | 139 | 46 | 1 | 29 | 167 | 12 | 147 | 2.23e-61 | 187 |
| Msa0993740 | AT5G07220.1 | 61.146 | 157 | 54 | 2 | 14 | 170 | 7 | 156 | 2.72e-61 | 192 |
| Msa0993740 | AT5G62100.5 | 62.676 | 142 | 50 | 1 | 29 | 170 | 12 | 150 | 1.26e-60 | 187 |
| Msa0993740 | AT5G62100.4 | 62.676 | 142 | 50 | 1 | 29 | 170 | 12 | 150 | 1.45e-60 | 187 |
| Msa0993740 | AT5G62100.2 | 62.676 | 142 | 50 | 1 | 29 | 170 | 12 | 150 | 7.60e-59 | 185 |
| Msa0993740 | AT5G62100.1 | 62.676 | 142 | 50 | 1 | 29 | 170 | 12 | 150 | 1.39e-58 | 185 |
| Msa0993740 | AT3G51780.1 | 41.060 | 151 | 70 | 5 | 32 | 167 | 10 | 156 | 1.78e-26 | 101 |
| Msa0993740 | AT5G14360.1 | 41.818 | 110 | 59 | 1 | 31 | 140 | 47 | 151 | 1.63e-23 | 91.3 |
| Msa0993740 | AT5G40630.1 | 36.937 | 111 | 67 | 2 | 30 | 140 | 54 | 161 | 3.03e-22 | 88.2 |
Find 40 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTCAAGAGAAAAGGATTT+TGG | 0.200313 | 6_4:+66821910 | Msa0993740:CDS |
| CTGCAACCACCTGAGCTTAT+AGG | 0.279994 | 6_4:-66821162 | None:intergenic |
| TGGTTCCTACAATTAGAGTT+AGG | 0.283648 | 6_4:+66821274 | Msa0993740:CDS |
| AGGTGGTTGCAGAGCTGAAC+CGG | 0.333790 | 6_4:+66821173 | Msa0993740:CDS |
| AGACAAAGAGAGGGATTCTA+AGG | 0.387250 | 6_4:+66821826 | Msa0993740:CDS |
| ATTAGAGTTAGGGTCAAGTT+TGG | 0.404587 | 6_4:+66821285 | Msa0993740:CDS |
| TTCAAATCGTAACCCTGCTT+TGG | 0.405274 | 6_4:+66821254 | Msa0993740:CDS |
| ATTAGTTCACAAGCCACATT+TGG | 0.410487 | 6_4:+66821330 | Msa0993740:CDS |
| AGATTAGCTTGGAAGTAGAT+AGG | 0.410787 | 6_4:+66821981 | Msa0993740:CDS |
| GGTTCCTACAATTAGAGTTA+GGG | 0.435115 | 6_4:+66821275 | Msa0993740:CDS |
| CTAATTGTAGGAACCAAAGC+AGG | 0.435383 | 6_4:-66821267 | None:intergenic |
| TTGACCCTAACTCTAATTGT+AGG | 0.437016 | 6_4:-66821279 | None:intergenic |
| TTGGAAGTAGATAGGCTTGC+CGG | 0.437951 | 6_4:+66821989 | Msa0993740:CDS |
| AAAATGTTGTCAGGACCAAC+TGG | 0.440623 | 6_4:+66821770 | Msa0993740:CDS |
| CATGGTAATAATAAGACAAA+TGG | 0.457366 | 6_4:+66821129 | Msa0993740:CDS |
| CAGAGCTGAACCGGGTTCAA+TGG | 0.458677 | 6_4:+66821182 | Msa0993740:CDS |
| AGTAGATAGGCTTGCCGGAC+GGG | 0.466043 | 6_4:+66821994 | Msa0993740:CDS |
| TCTTGATGTAGTTGGTGTAA+AGG | 0.476551 | 6_4:+66821853 | Msa0993740:CDS |
| CTGAACCGGGTTCAATGGAA+TGG | 0.478419 | 6_4:+66821187 | Msa0993740:CDS |
| ATCCTATTAGTCAAGAGAAA+AGG | 0.488781 | 6_4:+66821903 | Msa0993740:CDS |
| ATCTATCTCACAGATTAGCT+TGG | 0.490471 | 6_4:+66821970 | Msa0993740:CDS |
| GTTTCTTCACCTATAAGCTC+AGG | 0.498812 | 6_4:+66821153 | Msa0993740:CDS |
| GATTTGAAGAAAATGTTGTC+AGG | 0.501668 | 6_4:+66821761 | Msa0993740:CDS |
| ATTGAGGAAGAATGCTAAGA+TGG | 0.502442 | 6_4:+66821934 | Msa0993740:CDS |
| ATGGAATGGGAGATGAGGCC+AGG | 0.517312 | 6_4:+66821201 | Msa0993740:CDS |
| GTGAAAAGATTTACCAAATG+TGG | 0.519912 | 6_4:-66821343 | None:intergenic |
| ATGAGGAATAATCATAATCA+TGG | 0.527299 | 6_4:+66821111 | Msa0993740:CDS |
| TGAACCGGGTTCAATGGAAT+GGG | 0.545913 | 6_4:+66821188 | Msa0993740:CDS |
| CAAATCTAAACTAGTTCTTG+TGG | 0.548510 | 6_4:+66821877 | Msa0993740:CDS |
| TCTTCACCTATAAGCTCAGG+TGG | 0.558010 | 6_4:+66821156 | Msa0993740:CDS |
| ATCTCCCATTCCATTGAACC+CGG | 0.567397 | 6_4:-66821192 | None:intergenic |
| GATGAGGCCAGGTGGAATGT+TGG | 0.583094 | 6_4:+66821212 | Msa0993740:CDS |
| GTTTGAACCAACATTCCACC+TGG | 0.585611 | 6_4:-66821219 | None:intergenic |
| GGTGGTTGCAGAGCTGAACC+GGG | 0.606693 | 6_4:+66821174 | Msa0993740:CDS |
| AGGGTTACGATTTGAATCAG+TGG | 0.610632 | 6_4:-66821247 | None:intergenic |
| AAGTAGATAGGCTTGCCGGA+CGG | 0.614233 | 6_4:+66821993 | Msa0993740:CDS |
| GTTCAATGGAATGGGAGATG+AGG | 0.632010 | 6_4:+66821196 | Msa0993740:CDS |
| TCTTGATGATGTAAACCAGT+TGG | 0.653777 | 6_4:-66821785 | None:intergenic |
| GAATGGGAGATGAGGCCAGG+TGG | 0.662952 | 6_4:+66821204 | Msa0993740:CDS |
| TAATTGTAGGAACCAAAGCA+GGG | 0.677158 | 6_4:-66821266 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTAAAGTTGTGATT+TGG | + | chr6_4:66821715-66821734 | Msa0993740:intron | 15.0% |
| !!! | TATTTTTTAAAGTTGTGATT+TGG | + | chr6_4:66821715-66821734 | Msa0993740:intron | 15.0% |
| ! | ATGAGGAATAATCATAATCA+TGG | + | chr6_4:66821111-66821130 | Msa0993740:CDS | 25.0% |
| ! | CATGGTAATAATAAGACAAA+TGG | + | chr6_4:66821129-66821148 | Msa0993740:CDS | 25.0% |
| ! | TCAAAAGAAGAGAAATTACT+TGG | - | chr6_4:66821662-66821681 | None:intergenic | 25.0% |
| ! | ATGAGGAATAATCATAATCA+TGG | + | chr6_4:66821111-66821130 | Msa0993740:CDS | 25.0% |
| ! | CATGGTAATAATAAGACAAA+TGG | + | chr6_4:66821129-66821148 | Msa0993740:CDS | 25.0% |
| ! | TCAAAAGAAGAGAAATTACT+TGG | - | chr6_4:66821662-66821681 | None:intergenic | 25.0% |
| GTGAAAAGATTTACCAAATG+TGG | - | chr6_4:66821346-66821365 | None:intergenic | 30.0% | |
| TGTCAAATTATTAGCTGTGT+CGG | + | chr6_4:66821456-66821475 | Msa0993740:intron | 30.0% | |
| TCAAAAATCGTAATGAAGCA+TGG | - | chr6_4:66821505-66821524 | None:intergenic | 30.0% | |
| TCGAGTTTAAATCTTAACTC+AGG | - | chr6_4:66821580-66821599 | None:intergenic | 30.0% | |
| GATTTGAAGAAAATGTTGTC+AGG | + | chr6_4:66821761-66821780 | Msa0993740:CDS | 30.0% | |
| ! | TGTTTTACAAAGACAAAGAG+AGG | + | chr6_4:66821816-66821835 | Msa0993740:CDS | 30.0% |
| ! | GTTTTACAAAGACAAAGAGA+GGG | + | chr6_4:66821817-66821836 | Msa0993740:CDS | 30.0% |
| ! | CAAATCTAAACTAGTTCTTG+TGG | + | chr6_4:66821877-66821896 | Msa0993740:CDS | 30.0% |
| ATCCTATTAGTCAAGAGAAA+AGG | + | chr6_4:66821903-66821922 | Msa0993740:CDS | 30.0% | |
| ! | ATCCTTTTCTCTTGACTAAT+AGG | - | chr6_4:66821908-66821927 | None:intergenic | 30.0% |
| ! | TAGTCAAGAGAAAAGGATTT+TGG | + | chr6_4:66821910-66821929 | Msa0993740:CDS | 30.0% |
| !!! | AGAAAAGGATTTTGGAATTG+AGG | + | chr6_4:66821918-66821937 | Msa0993740:CDS | 30.0% |
| GTGAAAAGATTTACCAAATG+TGG | - | chr6_4:66821346-66821365 | None:intergenic | 30.0% | |
| TGTCAAATTATTAGCTGTGT+CGG | + | chr6_4:66821456-66821475 | Msa0993740:intron | 30.0% | |
| TCAAAAATCGTAATGAAGCA+TGG | - | chr6_4:66821505-66821524 | None:intergenic | 30.0% | |
| TCGAGTTTAAATCTTAACTC+AGG | - | chr6_4:66821580-66821599 | None:intergenic | 30.0% | |
| GATTTGAAGAAAATGTTGTC+AGG | + | chr6_4:66821761-66821780 | Msa0993740:CDS | 30.0% | |
| ! | TGTTTTACAAAGACAAAGAG+AGG | + | chr6_4:66821816-66821835 | Msa0993740:CDS | 30.0% |
| ! | GTTTTACAAAGACAAAGAGA+GGG | + | chr6_4:66821817-66821836 | Msa0993740:CDS | 30.0% |
| ! | CAAATCTAAACTAGTTCTTG+TGG | + | chr6_4:66821877-66821896 | Msa0993740:CDS | 30.0% |
| ATCCTATTAGTCAAGAGAAA+AGG | + | chr6_4:66821903-66821922 | Msa0993740:CDS | 30.0% | |
| ! | ATCCTTTTCTCTTGACTAAT+AGG | - | chr6_4:66821908-66821927 | None:intergenic | 30.0% |
| ! | TAGTCAAGAGAAAAGGATTT+TGG | + | chr6_4:66821910-66821929 | Msa0993740:CDS | 30.0% |
| !!! | AGAAAAGGATTTTGGAATTG+AGG | + | chr6_4:66821918-66821937 | Msa0993740:CDS | 30.0% |
| TAATTGTAGGAACCAAAGCA+GGG | - | chr6_4:66821269-66821288 | None:intergenic | 35.0% | |
| TGGTTCCTACAATTAGAGTT+AGG | + | chr6_4:66821274-66821293 | Msa0993740:CDS | 35.0% | |
| GGTTCCTACAATTAGAGTTA+GGG | + | chr6_4:66821275-66821294 | Msa0993740:CDS | 35.0% | |
| TTGACCCTAACTCTAATTGT+AGG | - | chr6_4:66821282-66821301 | None:intergenic | 35.0% | |
| ATTAGAGTTAGGGTCAAGTT+TGG | + | chr6_4:66821285-66821304 | Msa0993740:CDS | 35.0% | |
| ATTAGTTCACAAGCCACATT+TGG | + | chr6_4:66821330-66821349 | Msa0993740:CDS | 35.0% | |
| TAATCTTCCGCTATAAAGCA+CGG | + | chr6_4:66821395-66821414 | Msa0993740:intron | 35.0% | |
| ATCGTAATGAAGCATGGATA+CGG | - | chr6_4:66821499-66821518 | None:intergenic | 35.0% | |
| GACTCATGTAATTCGAAGTT+CGG | + | chr6_4:66821531-66821550 | Msa0993740:intron | 35.0% | |
| !! | AAGTTGTGATTTGGTGACAT+TGG | + | chr6_4:66821724-66821743 | Msa0993740:intron | 35.0% |
| !! | TCTTGATGATGTAAACCAGT+TGG | - | chr6_4:66821788-66821807 | None:intergenic | 35.0% |
| ! | AAGGCTTTTCTTGATGTAGT+TGG | + | chr6_4:66821845-66821864 | Msa0993740:CDS | 35.0% |
| ! | TCTTGATGTAGTTGGTGTAA+AGG | + | chr6_4:66821853-66821872 | Msa0993740:CDS | 35.0% |
| ATTGAGGAAGAATGCTAAGA+TGG | + | chr6_4:66821934-66821953 | Msa0993740:CDS | 35.0% | |
| ! | ATCTATCTCACAGATTAGCT+TGG | + | chr6_4:66821970-66821989 | Msa0993740:CDS | 35.0% |
| !! | AGATTAGCTTGGAAGTAGAT+AGG | + | chr6_4:66821981-66822000 | Msa0993740:CDS | 35.0% |
| TAATTGTAGGAACCAAAGCA+GGG | - | chr6_4:66821269-66821288 | None:intergenic | 35.0% | |
| TGGTTCCTACAATTAGAGTT+AGG | + | chr6_4:66821274-66821293 | Msa0993740:CDS | 35.0% | |
| GGTTCCTACAATTAGAGTTA+GGG | + | chr6_4:66821275-66821294 | Msa0993740:CDS | 35.0% | |
| TTGACCCTAACTCTAATTGT+AGG | - | chr6_4:66821282-66821301 | None:intergenic | 35.0% | |
| ATTAGAGTTAGGGTCAAGTT+TGG | + | chr6_4:66821285-66821304 | Msa0993740:CDS | 35.0% | |
| ATTAGTTCACAAGCCACATT+TGG | + | chr6_4:66821330-66821349 | Msa0993740:CDS | 35.0% | |
| TAATCTTCCGCTATAAAGCA+CGG | + | chr6_4:66821395-66821414 | Msa0993740:intron | 35.0% | |
| ATCGTAATGAAGCATGGATA+CGG | - | chr6_4:66821499-66821518 | None:intergenic | 35.0% | |
| GACTCATGTAATTCGAAGTT+CGG | + | chr6_4:66821531-66821550 | Msa0993740:intron | 35.0% | |
| !! | AAGTTGTGATTTGGTGACAT+TGG | + | chr6_4:66821724-66821743 | Msa0993740:intron | 35.0% |
| !! | TCTTGATGATGTAAACCAGT+TGG | - | chr6_4:66821788-66821807 | None:intergenic | 35.0% |
| ! | AAGGCTTTTCTTGATGTAGT+TGG | + | chr6_4:66821845-66821864 | Msa0993740:CDS | 35.0% |
| ! | TCTTGATGTAGTTGGTGTAA+AGG | + | chr6_4:66821853-66821872 | Msa0993740:CDS | 35.0% |
| ATTGAGGAAGAATGCTAAGA+TGG | + | chr6_4:66821934-66821953 | Msa0993740:CDS | 35.0% | |
| ! | ATCTATCTCACAGATTAGCT+TGG | + | chr6_4:66821970-66821989 | Msa0993740:CDS | 35.0% |
| !! | AGATTAGCTTGGAAGTAGAT+AGG | + | chr6_4:66821981-66822000 | Msa0993740:CDS | 35.0% |
| GTTTCTTCACCTATAAGCTC+AGG | + | chr6_4:66821153-66821172 | Msa0993740:CDS | 40.0% | |
| AGGGTTACGATTTGAATCAG+TGG | - | chr6_4:66821250-66821269 | None:intergenic | 40.0% | |
| TTCAAATCGTAACCCTGCTT+TGG | + | chr6_4:66821254-66821273 | Msa0993740:CDS | 40.0% | |
| CTAATTGTAGGAACCAAAGC+AGG | - | chr6_4:66821270-66821289 | None:intergenic | 40.0% | |
| TATAAAGCACGGACACTCTT+CGG | + | chr6_4:66821406-66821425 | Msa0993740:intron | 40.0% | |
| !! | TGTGATTTGGTGACATTGGT+TGG | + | chr6_4:66821728-66821747 | Msa0993740:intron | 40.0% |
| AAAATGTTGTCAGGACCAAC+TGG | + | chr6_4:66821770-66821789 | Msa0993740:CDS | 40.0% | |
| AGACAAAGAGAGGGATTCTA+AGG | + | chr6_4:66821826-66821845 | Msa0993740:CDS | 40.0% | |
| GTTTCTTCACCTATAAGCTC+AGG | + | chr6_4:66821153-66821172 | Msa0993740:CDS | 40.0% | |
| AGGGTTACGATTTGAATCAG+TGG | - | chr6_4:66821250-66821269 | None:intergenic | 40.0% | |
| TTCAAATCGTAACCCTGCTT+TGG | + | chr6_4:66821254-66821273 | Msa0993740:CDS | 40.0% | |
| CTAATTGTAGGAACCAAAGC+AGG | - | chr6_4:66821270-66821289 | None:intergenic | 40.0% | |
| TATAAAGCACGGACACTCTT+CGG | + | chr6_4:66821406-66821425 | Msa0993740:intron | 40.0% | |
| !! | TGTGATTTGGTGACATTGGT+TGG | + | chr6_4:66821728-66821747 | Msa0993740:intron | 40.0% |
| AAAATGTTGTCAGGACCAAC+TGG | + | chr6_4:66821770-66821789 | Msa0993740:CDS | 40.0% | |
| AGACAAAGAGAGGGATTCTA+AGG | + | chr6_4:66821826-66821845 | Msa0993740:CDS | 40.0% | |
| TCTTCACCTATAAGCTCAGG+TGG | + | chr6_4:66821156-66821175 | Msa0993740:CDS | 45.0% | |
| TGAACCGGGTTCAATGGAAT+GGG | + | chr6_4:66821188-66821207 | Msa0993740:CDS | 45.0% | |
| ATCTCCCATTCCATTGAACC+CGG | - | chr6_4:66821195-66821214 | None:intergenic | 45.0% | |
| GTTCAATGGAATGGGAGATG+AGG | + | chr6_4:66821196-66821215 | Msa0993740:CDS | 45.0% | |
| GTTTGAACCAACATTCCACC+TGG | - | chr6_4:66821222-66821241 | None:intergenic | 45.0% | |
| ! | AGAGTGTCCGTGCTTTATAG+CGG | - | chr6_4:66821405-66821424 | None:intergenic | 45.0% |
| ATTTGACACGTGTTCGACAC+CGG | - | chr6_4:66821444-66821463 | None:intergenic | 45.0% | |
| ATGAAGCATGGATACGGACA+CGG | - | chr6_4:66821493-66821512 | None:intergenic | 45.0% | |
| !! | TGACATTGGTTGGTGTTGCA+GGG | + | chr6_4:66821738-66821757 | Msa0993740:intron | 45.0% |
| TTGGAAGTAGATAGGCTTGC+CGG | + | chr6_4:66821989-66822008 | Msa0993740:CDS | 45.0% | |
| TCTTCACCTATAAGCTCAGG+TGG | + | chr6_4:66821156-66821175 | Msa0993740:CDS | 45.0% | |
| TGAACCGGGTTCAATGGAAT+GGG | + | chr6_4:66821188-66821207 | Msa0993740:CDS | 45.0% | |
| ATCTCCCATTCCATTGAACC+CGG | - | chr6_4:66821195-66821214 | None:intergenic | 45.0% | |
| GTTCAATGGAATGGGAGATG+AGG | + | chr6_4:66821196-66821215 | Msa0993740:CDS | 45.0% | |
| GTTTGAACCAACATTCCACC+TGG | - | chr6_4:66821222-66821241 | None:intergenic | 45.0% | |
| ! | AGAGTGTCCGTGCTTTATAG+CGG | - | chr6_4:66821405-66821424 | None:intergenic | 45.0% |
| ATTTGACACGTGTTCGACAC+CGG | - | chr6_4:66821444-66821463 | None:intergenic | 45.0% | |
| ATGAAGCATGGATACGGACA+CGG | - | chr6_4:66821493-66821512 | None:intergenic | 45.0% | |
| !! | TGACATTGGTTGGTGTTGCA+GGG | + | chr6_4:66821738-66821757 | Msa0993740:intron | 45.0% |
| TTGGAAGTAGATAGGCTTGC+CGG | + | chr6_4:66821989-66822008 | Msa0993740:CDS | 45.0% | |
| CTGCAACCACCTGAGCTTAT+AGG | - | chr6_4:66821165-66821184 | None:intergenic | 50.0% | |
| CTGAACCGGGTTCAATGGAA+TGG | + | chr6_4:66821187-66821206 | Msa0993740:CDS | 50.0% | |
| ! | TCTTCGGATTAGGCGTGTTC+CGG | + | chr6_4:66821422-66821441 | Msa0993740:intron | 50.0% |
| !! | GTGACATTGGTTGGTGTTGC+AGG | + | chr6_4:66821737-66821756 | Msa0993740:intron | 50.0% |
| !! | GACATTGGTTGGTGTTGCAG+GGG | + | chr6_4:66821739-66821758 | Msa0993740:intron | 50.0% |
| AAGTAGATAGGCTTGCCGGA+CGG | + | chr6_4:66821993-66822012 | Msa0993740:CDS | 50.0% | |
| CTGCAACCACCTGAGCTTAT+AGG | - | chr6_4:66821165-66821184 | None:intergenic | 50.0% | |
| CTGAACCGGGTTCAATGGAA+TGG | + | chr6_4:66821187-66821206 | Msa0993740:CDS | 50.0% | |
| ! | TCTTCGGATTAGGCGTGTTC+CGG | + | chr6_4:66821422-66821441 | Msa0993740:intron | 50.0% |
| !! | GTGACATTGGTTGGTGTTGC+AGG | + | chr6_4:66821737-66821756 | Msa0993740:intron | 50.0% |
| !! | GACATTGGTTGGTGTTGCAG+GGG | + | chr6_4:66821739-66821758 | Msa0993740:intron | 50.0% |
| AAGTAGATAGGCTTGCCGGA+CGG | + | chr6_4:66821993-66822012 | Msa0993740:CDS | 50.0% | |
| AGGTGGTTGCAGAGCTGAAC+CGG | + | chr6_4:66821173-66821192 | Msa0993740:CDS | 55.0% | |
| CAGAGCTGAACCGGGTTCAA+TGG | + | chr6_4:66821182-66821201 | Msa0993740:CDS | 55.0% | |
| ATGGAATGGGAGATGAGGCC+AGG | + | chr6_4:66821201-66821220 | Msa0993740:CDS | 55.0% | |
| GATGAGGCCAGGTGGAATGT+TGG | + | chr6_4:66821212-66821231 | Msa0993740:CDS | 55.0% | |
| GCACGGACACTCTTCGGATT+AGG | + | chr6_4:66821412-66821431 | Msa0993740:intron | 55.0% | |
| AGTAGATAGGCTTGCCGGAC+GGG | + | chr6_4:66821994-66822013 | Msa0993740:CDS | 55.0% | |
| GACGTAAACACGTACCCGTC+CGG | - | chr6_4:66822011-66822030 | None:intergenic | 55.0% | |
| AGGTGGTTGCAGAGCTGAAC+CGG | + | chr6_4:66821173-66821192 | Msa0993740:CDS | 55.0% | |
| CAGAGCTGAACCGGGTTCAA+TGG | + | chr6_4:66821182-66821201 | Msa0993740:CDS | 55.0% | |
| ATGGAATGGGAGATGAGGCC+AGG | + | chr6_4:66821201-66821220 | Msa0993740:CDS | 55.0% | |
| GATGAGGCCAGGTGGAATGT+TGG | + | chr6_4:66821212-66821231 | Msa0993740:CDS | 55.0% | |
| GCACGGACACTCTTCGGATT+AGG | + | chr6_4:66821412-66821431 | Msa0993740:intron | 55.0% | |
| AGTAGATAGGCTTGCCGGAC+GGG | + | chr6_4:66821994-66822013 | Msa0993740:CDS | 55.0% | |
| GACGTAAACACGTACCCGTC+CGG | - | chr6_4:66822011-66822030 | None:intergenic | 55.0% | |
| GGTGGTTGCAGAGCTGAACC+GGG | + | chr6_4:66821174-66821193 | Msa0993740:CDS | 60.0% | |
| GAATGGGAGATGAGGCCAGG+TGG | + | chr6_4:66821204-66821223 | Msa0993740:CDS | 60.0% | |
| GGTGGTTGCAGAGCTGAACC+GGG | + | chr6_4:66821174-66821193 | Msa0993740:CDS | 60.0% | |
| GAATGGGAGATGAGGCCAGG+TGG | + | chr6_4:66821204-66821223 | Msa0993740:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 66821111 | 66822033 | 66821111 | ID=Msa0993740;Name=Msa0993740 |
| chr6_4 | mRNA | 66821111 | 66822033 | 66821111 | ID=Msa0993740-mRNA-1;Parent=Msa0993740;Name=Msa0993740-mRNA-1;_AED=0.14;_eAED=0.16;_QI=0|0|0|1|1|0.5|2|0|171 |
| chr6_4 | exon | 66821111 | 66821351 | 66821111 | ID=Msa0993740-mRNA-1:exon:12459;Parent=Msa0993740-mRNA-1 |
| chr6_4 | exon | 66821759 | 66822033 | 66821759 | ID=Msa0993740-mRNA-1:exon:12460;Parent=Msa0993740-mRNA-1 |
| chr6_4 | CDS | 66821111 | 66821351 | 66821111 | ID=Msa0993740-mRNA-1:cds;Parent=Msa0993740-mRNA-1 |
| chr6_4 | CDS | 66821759 | 66822033 | 66821759 | ID=Msa0993740-mRNA-1:cds;Parent=Msa0993740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
