AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130990 MtrunA17_Chr1g0199551 94.598 722 39 0 1 722 1 722 0.0 1424
Msa0130990 MtrunA17_Chr1g0181091 81.636 697 128 0 26 722 16 712 0.0 1212
Msa0130990 MtrunA17_Chr7g0264351 82.014 695 125 0 28 722 30 724 0.0 1209
Msa0130990 MtrunA17_Chr7g0264311 81.871 695 126 0 28 722 30 724 0.0 1207
Msa0130990 MtrunA17_Chr7g0264341 81.583 695 128 0 28 722 30 724 0.0 1205
Msa0130990 MtrunA17_Chr2g0326921 72.166 697 186 4 29 721 5 697 0.0 1032
Msa0130990 MtrunA17_Chr5g0448361 68.688 709 217 3 17 721 1 708 0.0 1021
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130990 AT2G37040.1 77.824 726 156 2 1 722 1 725 0.0 1195
Msa0130990 AT3G53260.1 78.873 710 144 1 19 722 8 717 0.0 1192
Msa0130990 AT3G10340.1 77.542 708 156 3 17 722 1 707 0.0 1160
Msa0130990 AT5G04230.1 71.264 696 184 6 30 722 12 694 0.0 1019
Msa0130990 AT5G04230.2 70.857 700 184 7 30 722 12 698 0.0 1013

Find 187 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTGGCCTTCCAATTAAA+AGG 0.205075 1_3:+61487449 None:intergenic
CCTCAAAAGCTCCAATCTTT+TGG 0.213487 1_3:+61486243 None:intergenic
TATTGATGTTTCAAGGAATA+TGG 0.225643 1_3:-61486933 Msa0130990:CDS
AATTGAGGCTGCTGCTATTA+TGG 0.231999 1_3:-61487149 Msa0130990:CDS
CAAAGGGTCATTGTTGTTAC+TGG 0.232524 1_3:+61492290 None:intergenic
CTACATTCCTTGATCATATT+AGG 0.256307 1_3:+61486146 None:intergenic
GAAGAAATTGAGGCTGATTA+AGG 0.268813 1_3:+61492414 None:intergenic
TATATATGTTATATTGTATA+GGG 0.269837 1_3:+61492511 None:intergenic
TGCTGACAGGTGAGAAAATT+AGG 0.277184 1_3:-61486076 Msa0130990:CDS
AAATAAACATTACATGAAAA+AGG 0.283789 1_3:+61485882 None:intergenic
CTAAGGGCACAACCGGTTTC+CGG 0.296842 1_3:+61492196 None:intergenic
TCAAAATCTATTGGACCTAA+TGG 0.305142 1_3:-61487427 Msa0130990:CDS
TGGATCAGGTTTGGCTTCAT+TGG 0.306429 1_3:-61487299 Msa0130990:CDS
GCATTCAGAACTTGTCCATT+AGG 0.307197 1_3:+61487412 None:intergenic
GCTAGGGTTCAAGTTGAAAA+TGG 0.308466 1_3:-61486182 Msa0130990:CDS
CAACAATGACCCTTTGAATT+GGG 0.317046 1_3:-61492283 Msa0130990:CDS
ACTAGTGCTAAACCTTCTTT+AGG 0.318031 1_3:+61487337 None:intergenic
CAACTAGCTGGAATTGAAAC+TGG 0.324510 1_3:-61487376 Msa0130990:CDS
TGCTAGCCGCAATCCAAGTT+TGG 0.335095 1_3:-61486759 Msa0130990:CDS
TTCACCATTGCAAAGATTCA+TGG 0.338349 1_3:+61492320 None:intergenic
ACTCATGTCATCCACCTTCT+TGG 0.341156 1_3:-61486564 Msa0130990:CDS
AACCAAGATGTTAACTCTTT+AGG 0.341255 1_3:-61486632 Msa0130990:CDS
CGCAATCCAAGTTTGGATTA+CGG 0.346277 1_3:-61486752 Msa0130990:CDS
AGGCCAAATTCAAAATCTAT+TGG 0.352492 1_3:-61487436 Msa0130990:CDS
ACAACAATGACCCTTTGAAT+TGG 0.354806 1_3:-61492284 Msa0130990:CDS
GGGAGGAATTTGTGGGATAT+AGG 0.356468 1_3:+61492532 None:intergenic
ATTCCTTTAGCATATGTTGC+TGG 0.359407 1_3:-61487472 Msa0130990:CDS
TGTCTCAGCTTCTGCATTAG+AGG 0.360021 1_3:+61486329 None:intergenic
AGTTCATAAGAGAAACTTTA+GGG 0.361370 1_3:-61486106 Msa0130990:CDS
TACTGCAGTTGGATCAGGTT+TGG 0.362782 1_3:-61487308 Msa0130990:CDS
GCAGTGATTGTACCTCTTAA+TGG 0.365126 1_3:+61487508 None:intergenic
ACATTGCTTCAAGGATATTC+AGG 0.370009 1_3:-61487595 Msa0130990:CDS
AGATGGAAGTTATTATCTTA+AGG 0.370273 1_3:-61487116 Msa0130990:CDS
ATCGCATATCTATCTTGTTT+AGG 0.370503 1_3:+61487055 None:intergenic
TCCTTCTCACAAAACCTTGA+TGG 0.371743 1_3:+61486419 None:intergenic
TGCAACAGATTTCTGAATGC+TGG 0.371910 1_3:-61487697 Msa0130990:intron
CCAATCACTACTAGCTTTAA+CGG 0.372093 1_3:+61492083 None:intergenic
TACCGGCGTGGCGGTTGAAC+TGG 0.380657 1_3:-61492124 Msa0130990:CDS
ATCCACTTATTGATGTTTCA+AGG 0.393519 1_3:-61486940 Msa0130990:CDS
GTAGCACAATCCTAGCAAAT+AGG 0.399936 1_3:+61485951 None:intergenic
TCAAGGAATATGGCACTTCA+TGG 0.407244 1_3:-61486923 Msa0130990:CDS
GTTGATCATGCATTGCAAAA+TGG 0.407281 1_3:-61486299 Msa0130990:CDS
TTTCCACCTCTTTAGGCAAA+AGG 0.408359 1_3:+61486207 None:intergenic
CATGCCTGCTCTTGTGGCTG+TGG 0.413922 1_3:+61487633 None:intergenic
AGGAATCAGATTTGAAATCA+TGG 0.416143 1_3:-61487575 Msa0130990:CDS
CGGAAACCGGTTGTGCCCTT+AGG 0.420331 1_3:-61492195 Msa0130990:CDS
TGTGCCAAGCTATTGATCTA+AGG 0.425341 1_3:-61486535 Msa0130990:CDS
ACCTGATGAGTTCACTTTGA+AGG 0.426969 1_3:+61491968 None:intergenic
GATATAGGTGAATGGCAGTT+AGG 0.429241 1_3:+61492547 None:intergenic
AATGGTACTGCAGTTGGATC+AGG 0.429438 1_3:-61487313 Msa0130990:CDS
TTCCTTGAAACATCAATAAG+TGG 0.432083 1_3:+61486938 None:intergenic
AAGTTCATAAGAGAAACTTT+AGG 0.433340 1_3:-61486107 Msa0130990:CDS
TTTCCACCTAAGGGCACAAC+CGG 0.434202 1_3:+61492189 None:intergenic
TGATCATAGGAAATGGGAAA+TGG 0.436122 1_3:+61492631 None:intergenic
CGGCTAGCAGTGAGATTTGA+AGG 0.436480 1_3:+61486773 None:intergenic
GTGGTTGATAGTATGAATAA+AGG 0.440659 1_3:-61492060 Msa0130990:CDS
GGCGGTTGAACTGGCGGAAG+AGG 0.442005 1_3:-61492115 Msa0130990:CDS
TTGTATAGGGGAGGAATTTG+TGG 0.444238 1_3:+61492524 None:intergenic
GTATTGAAGTTCTGAACAAT+AGG 0.446436 1_3:+61486700 None:intergenic
CTATATATGTTATATTGTAT+AGG 0.447469 1_3:+61492510 None:intergenic
GAAGACATGGTGTTATGTTA+TGG 0.450134 1_3:+61487530 None:intergenic
CGTTTAGCCATTGCTTCCAT+TGG 0.450648 1_3:-61486854 Msa0130990:CDS
AACCAACATGCCTGCTCTTG+TGG 0.452957 1_3:+61487627 None:intergenic
TATGGAGTGACCACTGGGTT+TGG 0.453303 1_3:-61492027 Msa0130990:CDS
TGAGGTGAAGCGTATGGTAG+AGG 0.454428 1_3:-61492223 Msa0130990:CDS
CCGTTAAAGCTAGTAGTGAT+TGG 0.454848 1_3:-61492083 Msa0130990:CDS
ACACCATGTCTTCCATTAAG+AGG 0.455708 1_3:-61487520 Msa0130990:CDS
GTTTCAACTTATGAATCAAA+TGG 0.458671 1_3:+61487185 None:intergenic
AGAGGTACAATCACTGCATC+AGG 0.458933 1_3:-61487502 Msa0130990:CDS
TGCATTGCAAAATGGTGATA+AGG 0.460091 1_3:-61486291 Msa0130990:CDS
ATTCTCACAGTTGGTGTCAA+TGG 0.460157 1_3:-61486452 Msa0130990:CDS
CCCTTCAAAGTGAACTCATC+AGG 0.460498 1_3:-61491969 Msa0130990:intron
CGAACATCACCGCAGTGGCT+TGG 0.467832 1_3:-61487031 Msa0130990:CDS
TTGAAGCCGTAATCCAAACT+TGG 0.469165 1_3:+61486746 None:intergenic
AAAGAGGCATTTCAACTAGC+TGG 0.470037 1_3:-61487388 Msa0130990:CDS
GATTTACTCAATGTTGTTGA+AGG 0.472171 1_3:-61486398 Msa0130990:CDS
TTCCACCTCTTTAGGCAAAA+GGG 0.473173 1_3:+61486208 None:intergenic
GATAGCTATGGAGTGACCAC+TGG 0.474320 1_3:-61492033 Msa0130990:CDS
TGGTTGATAGTATGAATAAA+GGG 0.479080 1_3:-61492059 Msa0130990:CDS
TGTATAGGGGAGGAATTTGT+GGG 0.487300 1_3:+61492525 None:intergenic
TTTGAGTTGCAACCTAAAGA+AGG 0.487825 1_3:-61487349 Msa0130990:CDS
GTTGTGCCCTTAGGTGGAAA+AGG 0.495345 1_3:-61492186 Msa0130990:CDS
CCTGATGAGTTCACTTTGAA+GGG 0.497056 1_3:+61491969 None:intergenic
AGCCTAAAGAGTTAACATCT+TGG 0.498300 1_3:+61486630 None:intergenic
ATGCCTGCTCTTGTGGCTGT+GGG 0.500154 1_3:+61487634 None:intergenic
CTAAAGAGGTGGAAAATGCT+AGG 0.500407 1_3:-61486199 Msa0130990:CDS
TCCCATGTTGGATTGTCTAA+AGG 0.502948 1_3:-61485994 Msa0130990:CDS
CGTTAAAGCTAGTAGTGATT+GGG 0.503606 1_3:-61492082 Msa0130990:CDS
AAATTTACTAGTTGTTCTCT+CGG 0.506721 1_3:-61487263 Msa0130990:CDS
ATAATTAACAAATAAGATCA+TGG 0.506881 1_3:-61492385 Msa0130990:exon
ATCAAATGGTCAGTGAATTG+AGG 0.509685 1_3:+61487199 None:intergenic
TTCAGTTCCTAATATGATCA+AGG 0.512088 1_3:-61486153 Msa0130990:CDS
AACAATGACCCTTTGAATTG+GGG 0.517697 1_3:-61492282 Msa0130990:CDS
ACCAACTGTGAGAATTCTCT+TGG 0.519185 1_3:+61486460 None:intergenic
AGCAAACATAAGTTTACCAA+TGG 0.521443 1_3:+61486838 None:intergenic
AACAATAGCACAAGTGGCTG+CGG 0.522595 1_3:-61492160 Msa0130990:CDS
AGTTTGGATTACGGCTTCAA+AGG 0.525060 1_3:-61486743 Msa0130990:CDS
CCATACGCTTCACCTCATCT+AGG 0.525749 1_3:+61492229 None:intergenic
GGTAGAGGAATACCGGAAAC+CGG 0.526167 1_3:-61492208 Msa0130990:CDS
ACCTGGTGAGGAATGTGATA+AGG 0.527766 1_3:-61486051 Msa0130990:CDS
AAACCGGTTGTGCCCTTAGG+TGG 0.529697 1_3:-61492192 Msa0130990:CDS
CTAGTGAATGGTACTGCAGT+TGG 0.530990 1_3:-61487319 Msa0130990:CDS
TCTTGTTTAGGCTTCTGAAG+TGG 0.531050 1_3:+61487067 None:intergenic
TTAGGGACAAGTTTGCTGAC+AGG 0.531897 1_3:-61486089 Msa0130990:CDS
TCTCTTATGAACTTGTACAA+TGG 0.534620 1_3:+61486116 None:intergenic
AGCGTATGGTAGAGGAATAC+CGG 0.537269 1_3:-61492215 Msa0130990:CDS
TTGATCATATTAGGAACTGA+AGG 0.538404 1_3:+61486155 None:intergenic
TATGGCTGCAGATTCTATGA+AGG 0.539419 1_3:-61492259 Msa0130990:CDS
GAAGGTTTAGCACTAGTGAA+TGG 0.540506 1_3:-61487331 Msa0130990:CDS
TGCTCCTCTACCTATTTGCT+AGG 0.540972 1_3:-61485961 Msa0130990:exon
ACTTCATCCTGGTCAAATTG+AGG 0.542522 1_3:-61487164 Msa0130990:CDS
CTTTGAACATGACTGGTGAC+AGG 0.544397 1_3:+61486668 None:intergenic
AGAATCAACACATTGCTTCA+AGG 0.544518 1_3:-61487604 Msa0130990:CDS
CAATCCTAGCAAATAGGTAG+AGG 0.545332 1_3:+61485957 None:intergenic
CCTCCCACAGCCACAAGAGC+AGG 0.545619 1_3:-61487637 Msa0130990:CDS
AGGCCAGCAACATATGCTAA+AGG 0.547360 1_3:+61487469 None:intergenic
TCACAGCATTGTGTGATGGA+AGG 0.547593 1_3:-61486025 Msa0130990:CDS
TCAAATGGAGATAATAGCAA+TGG 0.548037 1_3:-61492357 Msa0130990:CDS
TGACCCTTTGAATTGGGGTA+TGG 0.549794 1_3:-61492277 Msa0130990:CDS
ACAAGTTCTGAATGCTAAAG+AGG 0.551455 1_3:-61487404 Msa0130990:CDS
ATGGTGAGTTGCATCCATCA+AGG 0.558706 1_3:-61486433 Msa0130990:CDS
GAAAATTAGGTCACCTGGTG+AGG 0.558787 1_3:-61486063 Msa0130990:CDS
CAGCCATACCCCAATTCAAA+GGG 0.559111 1_3:+61492274 None:intergenic
GCCAAGAGAATTCTCACAGT+TGG 0.559513 1_3:-61486461 Msa0130990:CDS
TTATGATGATGAAGAAATTG+AGG 0.560194 1_3:+61492404 None:intergenic
AATAAGTGGATTGTCATTCA+CGG 0.561129 1_3:+61486952 None:intergenic
AGAGGGTATGTAGCACTGCA+AGG 0.563580 1_3:+61486347 None:intergenic
AATTTCCAAGGTACACCGAT+TGG 0.566709 1_3:-61486896 Msa0130990:CDS
AAGGTTTATTGATCCCATGT+TGG 0.570229 1_3:-61486006 Msa0130990:CDS
ATACACCAATCGGTGTACCT+TGG 0.570750 1_3:+61486891 None:intergenic
CCTGCTCTTGTGGCTGTGGG+AGG 0.571117 1_3:+61487637 None:intergenic
ATTTGTGGGATATAGGTGAA+TGG 0.573685 1_3:+61492539 None:intergenic
AATAAAGGGACTGATAGCTA+TGG 0.573860 1_3:-61492045 Msa0130990:CDS
ACGCAACAAAGATGATTGAG+AGG 0.576256 1_3:-61486985 Msa0130990:CDS
TTATCCATCGATACACCAAT+CGG 0.577310 1_3:+61486881 None:intergenic
CGGCGTGGCGGTTGAACTGG+CGG 0.577849 1_3:-61492121 Msa0130990:CDS
TCTTCCATGAATCTTTGCAA+TGG 0.578220 1_3:-61492324 Msa0130990:CDS
GCGGTTGCAACTCATAGTAC+CGG 0.581294 1_3:-61492141 Msa0130990:CDS
TGTGCCTTAGATCAATAGCT+TGG 0.582659 1_3:+61486531 None:intergenic
TAAAGAGGTGGAAAATGCTA+GGG 0.582840 1_3:-61486198 Msa0130990:CDS
CTCCTTTAGACAATCCAACA+TGG 0.584218 1_3:+61485992 None:intergenic
CATAAGTTGAAACTTCATCC+TGG 0.584696 1_3:-61487175 Msa0130990:CDS
AAGTTTACCAATGGAAGCAA+TGG 0.586687 1_3:+61486847 None:intergenic
GATAATAGCAATGGTTGTAA+CGG 0.587621 1_3:-61492348 Msa0130990:CDS
GCAGCCATACCCCAATTCAA+AGG 0.588052 1_3:+61492273 None:intergenic
TGATCATATTAGGAACTGAA+GGG 0.589476 1_3:+61486156 None:intergenic
TTCAGCACTTTGAACATGAC+TGG 0.590120 1_3:+61486661 None:intergenic
GGTGAGAAAATTAGGTCACC+TGG 0.591426 1_3:-61486068 Msa0130990:CDS
GTCTCAGCTTCTGCATTAGA+GGG 0.593808 1_3:+61486330 None:intergenic
AGGTTTAACAATAGCACAAG+TGG 0.595101 1_3:-61492166 Msa0130990:CDS
TATTGATCTAAGGCACATTG+AGG 0.597254 1_3:-61486525 Msa0130990:CDS
ACCTTATCACATTCCTCACC+AGG 0.598892 1_3:+61486050 None:intergenic
TGTTGGATTGTCTAAAGGAG+TGG 0.600217 1_3:-61485989 Msa0130990:CDS
CCTAGATGAGGTGAAGCGTA+TGG 0.602524 1_3:-61492229 Msa0130990:CDS
CTTCATGGAGGAAATTTCCA+AGG 0.609850 1_3:-61486908 Msa0130990:CDS
TACACCGATTGGTGTATCGA+TGG 0.610433 1_3:-61486885 Msa0130990:CDS
ATAGCTATGGAGTGACCACT+GGG 0.616078 1_3:-61492032 Msa0130990:CDS
GAGGGTATGTAGCACTGCAA+GGG 0.617118 1_3:+61486348 None:intergenic
GTGAATGACATCTATAGCAA+CGG 0.618845 1_3:-61486800 Msa0130990:CDS
ATATATGTTATATTGTATAG+GGG 0.619769 1_3:+61492512 None:intergenic
TAAAGCTAGTAGTGATTGGG+TGG 0.624133 1_3:-61492079 Msa0130990:CDS
GTACCTCTTAATGGAAGACA+TGG 0.627273 1_3:+61487517 None:intergenic
CGCAACAAAGATGATTGAGA+GGG 0.628498 1_3:-61486984 Msa0130990:CDS
GCAGCAGCCTCAATTTGACC+AGG 0.628904 1_3:+61487157 None:intergenic
CGTAATCCAAACTTGGATTG+CGG 0.630042 1_3:+61486753 None:intergenic
ATGGCTGCAGATTCTATGAA+GGG 0.630430 1_3:-61492258 Msa0130990:CDS
TTGGCACAATGCTACCAAGA+AGG 0.630811 1_3:+61486550 None:intergenic
TATGTTATATTGTATAGGGG+AGG 0.631073 1_3:+61492515 None:intergenic
CGCCAGTTCAACCGCCACGC+CGG 0.633173 1_3:+61492122 None:intergenic
GCACAATGCTACCAAGAAGG+TGG 0.633770 1_3:+61486553 None:intergenic
CAAAGGAGCAGAAATTGCAA+TGG 0.637084 1_3:-61486726 Msa0130990:CDS
AGCCACAAGAGCAGGCATGT+TGG 0.637350 1_3:-61487629 Msa0130990:CDS
AACTCATAGTACCGGCGTGG+CGG 0.639411 1_3:-61492133 Msa0130990:CDS
TCCTTTAGACAATCCAACAT+GGG 0.644402 1_3:+61485993 None:intergenic
TGTCGAATCACTTCAATCTG+CGG 0.647914 1_3:+61487007 None:intergenic
ATTGCAAAATGGTGATAAGG+AGG 0.652869 1_3:-61486288 Msa0130990:CDS
GAAGGGTAGTCACCTAGATG+AGG 0.661131 1_3:-61492241 Msa0130990:CDS
GACTGGTGACAGGATTAGCA+AGG 0.662228 1_3:+61486678 None:intergenic
TGCAACTCATAGTACCGGCG+TGG 0.671857 1_3:-61492136 Msa0130990:CDS
ATCACTACTAGCTTTAACGG+CGG 0.674303 1_3:+61492086 None:intergenic
TCACACAGAAGAACAAAACA+AGG 0.686755 1_3:-61491997 Msa0130990:CDS
CGATTCGAACATCACCGCAG+TGG 0.691025 1_3:-61487036 Msa0130990:CDS
AGGAATATGGCACTTCATGG+AGG 0.692048 1_3:-61486920 Msa0130990:CDS
GATTGTCTAAAGGAGTGGAA+TGG 0.692592 1_3:-61485984 Msa0130990:CDS
ATCTGCGGTCCAAGCCACTG+CGG 0.717350 1_3:+61487022 None:intergenic
CACAGAAGAACAAAACAAGG+TGG 0.749750 1_3:-61491994 Msa0130990:CDS
TGAGGTTGCACCAAACCCAG+TGG 0.771981 1_3:+61492017 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAATAAAATATTT+AGG + chr1_3:61488647-61488666 None:intergenic 0.0%
!!! TTTATTTATTTATTTATTTT+AGG - chr1_3:61488653-61488672 Msa0130990:intron 0.0%
!!! GTGTTTTTTTTTTTTTTTTT+TGG + chr1_3:61485835-61485854 None:intergenic 10.0%
!!! TAAATAAATATTTTGATCAT+AGG + chr1_3:61485875-61485894 None:intergenic 10.0%
!! TATATATGTTATATTGTATA+GGG + chr1_3:61485982-61486001 None:intergenic 10.0%
!!! TAGTTTTTTTTTTTTGTTTT+TGG + chr1_3:61487718-61487737 None:intergenic 10.0%
!!! TATATAAAAGTTGATTATTT+AGG + chr1_3:61488066-61488085 None:intergenic 10.0%
!! CTGTAAATTTATTATATAAA+AGG + chr1_3:61488145-61488164 None:intergenic 10.0%
!!! GAAATACTTAATATTTTATT+TGG + chr1_3:61489127-61489146 None:intergenic 10.0%
!!! GAAAGTTTTTTTTTTTTTTT+TGG + chr1_3:61489248-61489267 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr1_3:61489471-61489490 Msa0130990:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG - chr1_3:61489472-61489491 Msa0130990:intron 10.0%
!! AAGATAAATAATATCATATA+AGG - chr1_3:61489880-61489899 Msa0130990:intron 10.0%
!! AATAAATATGTATAAATGAA+GGG + chr1_3:61490212-61490231 None:intergenic 10.0%
!! AAATAAATATGTATAAATGA+AGG + chr1_3:61490213-61490232 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489019-61489038 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489019-61489038 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489019-61489038 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489019-61489038 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489019-61489038 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489019-61489038 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489019-61489038 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489019-61489038 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489019-61489038 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489019-61489038 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489019-61489038 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489019-61489038 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489019-61489038 None:intergenic 100.0%
!!! TTTTTTTTTTTTTGGTTTGT+AGG + chr1_3:61485827-61485846 None:intergenic 15.0%
!! ATATATGTTATATTGTATAG+GGG + chr1_3:61485981-61486000 None:intergenic 15.0%
!! CTATATATGTTATATTGTAT+AGG + chr1_3:61485983-61486002 None:intergenic 15.0%
!! ATAATTAACAAATAAGATCA+TGG - chr1_3:61486105-61486124 Msa0130990:CDS 15.0%
!!! AATCTAGTTTTTAAAAATCA+TGG - chr1_3:61486919-61486938 Msa0130990:CDS 15.0%
!! ATATCACAACTTAATATTAT+AGG + chr1_3:61487031-61487050 None:intergenic 15.0%
!!! TTATGTCTACAATATATTTT+GGG - chr1_3:61487152-61487171 Msa0130990:CDS 15.0%
!! AACTTATTTATAAAACAAGT+GGG + chr1_3:61487682-61487701 None:intergenic 15.0%
!! TAACTTATTTATAAAACAAG+TGG + chr1_3:61487683-61487702 None:intergenic 15.0%
!! TTTATTTATTCCATAAACTT+AGG + chr1_3:61488967-61488986 None:intergenic 15.0%
!! AGTTTATGGAATAAATAAAA+TGG - chr1_3:61488968-61488987 Msa0130990:intron 15.0%
!! GTTTATGGAATAAATAAAAT+GGG - chr1_3:61488969-61488988 Msa0130990:intron 15.0%
!! AATATTGAAAAAAAAAACGA+GGG + chr1_3:61489179-61489198 None:intergenic 15.0%
!! AAATATTGAAAAAAAAAACG+AGG + chr1_3:61489180-61489199 None:intergenic 15.0%
!! AGTAATAACTAACTAATAAT+TGG + chr1_3:61489388-61489407 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr1_3:61489473-61489492 Msa0130990:intron 15.0%
!! AAATAAACATTACATGAAAA+AGG + chr1_3:61492611-61492630 None:intergenic 15.0%
!!! ATATTTTGATCATAGGAAAT+GGG + chr1_3:61485868-61485887 None:intergenic 20.0%
!!! AATATTTTGATCATAGGAAA+TGG + chr1_3:61485869-61485888 None:intergenic 20.0%
!! ATAAGATCACTTTATTAAGT+TGG + chr1_3:61486674-61486693 None:intergenic 20.0%
!! TGTAAAAAACATTTACCTTA+TGG - chr1_3:61486717-61486736 Msa0130990:CDS 20.0%
!! TTAATTGTTATGTAACCATA+AGG + chr1_3:61486735-61486754 None:intergenic 20.0%
!! TATCTTCTTGCTAAAATTAT+TGG + chr1_3:61486868-61486887 None:intergenic 20.0%
!!! TTGTAATTTTGACAAATCTA+TGG - chr1_3:61486949-61486968 Msa0130990:CDS 20.0%
!!! AATTTTATCAAATGCATGTA+TGG + chr1_3:61486982-61487001 None:intergenic 20.0%
!!! CTTATGTCTACAATATATTT+TGG - chr1_3:61487151-61487170 Msa0130990:CDS 20.0%
!!! TATGTCTACAATATATTTTG+GGG - chr1_3:61487153-61487172 Msa0130990:CDS 20.0%
!!! GTTTTTAGTTGGTTTATTAA+TGG - chr1_3:61487244-61487263 Msa0130990:CDS 20.0%
!! TGTTCATAAAACGTAAAAAA+TGG - chr1_3:61487627-61487646 Msa0130990:CDS 20.0%
!!! GCATTATTCTTATTTCTTTT+GGG + chr1_3:61487759-61487778 None:intergenic 20.0%
!!! AGCATTATTCTTATTTCTTT+TGG + chr1_3:61487760-61487779 None:intergenic 20.0%
!! ATCATTAGGAAAAGAAATAT+AGG - chr1_3:61487988-61488007 Msa0130990:intron 20.0%
!! AAATTATAGTTATAGTGCAA+AGG - chr1_3:61488491-61488510 Msa0130990:intron 20.0%
!! AATGTTATCCTTATATTGTT+AGG - chr1_3:61488754-61488773 Msa0130990:intron 20.0%
!! TACATTTACCTAACAATATA+AGG + chr1_3:61488765-61488784 None:intergenic 20.0%
!! TCGCAATGTAATAAATTATA+TGG + chr1_3:61488825-61488844 None:intergenic 20.0%
!!! TAAACTTAGGTATTGAATAA+TGG + chr1_3:61488954-61488973 None:intergenic 20.0%
!! TTATTCAATACCTAAGTTTA+TGG - chr1_3:61488954-61488973 Msa0130990:intron 20.0%
!! ATAAATAAAATGGGAAAAGA+TGG - chr1_3:61488978-61488997 Msa0130990:intron 20.0%
!! TAAATAAAATGGGAAAAGAT+GGG - chr1_3:61488979-61488998 Msa0130990:intron 20.0%
!!! TTTTCACTATAGTTATTAGA+CGG + chr1_3:61489294-61489313 None:intergenic 20.0%
!!! TTAAAATGACTCAGTTATTT+TGG - chr1_3:61489542-61489561 Msa0130990:intron 20.0%
!!! TAAAATGACTCAGTTATTTT+GGG - chr1_3:61489543-61489562 Msa0130990:intron 20.0%
!! AGTATATGAATGACTTATAA+AGG - chr1_3:61489610-61489629 Msa0130990:intron 20.0%
!!! TTTTAGTTACAAATTCATGA+CGG - chr1_3:61489749-61489768 Msa0130990:intron 20.0%
!! AAATGTGGTCAAAATATATT+AGG + chr1_3:61489845-61489864 None:intergenic 20.0%
!! TAAAGATAAAACATATGCAT+TGG - chr1_3:61489981-61490000 Msa0130990:intron 20.0%
!! TAAGGAGTTGTTAAATTAAA+TGG - chr1_3:61490308-61490327 Msa0130990:intron 20.0%
!! ATAATGATTAAGAGTCAATT+AGG + chr1_3:61490544-61490563 None:intergenic 20.0%
!! TAATATTAATTCATCAGTTG+AGG - chr1_3:61490564-61490583 Msa0130990:intron 20.0%
!!! ATTATGGAACATATTTTAGA+TGG - chr1_3:61491357-61491376 Msa0130990:intron 20.0%
!!! TGTTTATTTTATGAAGATGT+TGG - chr1_3:61492622-61492641 Msa0130990:five_prime_UTR 20.0%
!!! GTTTATTTTATGAAGATGTT+GGG - chr1_3:61492623-61492642 Msa0130990:five_prime_UTR 20.0%
!! TTATGATGATGAAGAAATTG+AGG + chr1_3:61486089-61486108 None:intergenic 25.0%
!!! TGGTTGATAGTATGAATAAA+GGG - chr1_3:61486431-61486450 Msa0130990:CDS 25.0%
! AAATGAAAACTACAACATCT+TGG - chr1_3:61486827-61486846 Msa0130990:CDS 25.0%
! TATCGTATCTTAACATATGT+TGG - chr1_3:61487194-61487213 Msa0130990:CDS 25.0%
!!! TATTTTAATATCCTGTGTCT+CGG - chr1_3:61487222-61487241 Msa0130990:CDS 25.0%
!! TAGTTGGTTTATTAATGGAT+TGG - chr1_3:61487249-61487268 Msa0130990:CDS 25.0%
!! AGTTATATTTTCCCTTACTT+TGG - chr1_3:61487283-61487302 Msa0130990:CDS 25.0%
!! GTTATATTTTCCCTTACTTT+GGG - chr1_3:61487284-61487303 Msa0130990:CDS 25.0%
!! TTATATTTTCCCTTACTTTG+GGG - chr1_3:61487285-61487304 Msa0130990:CDS 25.0%
! TTAATTGTAGATTGAACAGA+AGG - chr1_3:61487373-61487392 Msa0130990:CDS 25.0%
!! ACAAACAAAAGCACAAAAAA+GGG + chr1_3:61487600-61487619 None:intergenic 25.0%
!! AACAAACAAAAGCACAAAAA+AGG + chr1_3:61487601-61487620 None:intergenic 25.0%
!!! TATTTCTTTTGGGTTACAAA+TGG + chr1_3:61487749-61487768 None:intergenic 25.0%
! ATGGCTATTCTATAAAACAT+GGG - chr1_3:61487815-61487834 Msa0130990:intron 25.0%
!! TTTTAGCACAAATCATCATT+AGG - chr1_3:61487974-61487993 Msa0130990:intron 25.0%
! AATTTATTACATTGCGAAAG+AGG - chr1_3:61488828-61488847 Msa0130990:intron 25.0%
! ATTTATTACATTGCGAAAGA+GGG - chr1_3:61488829-61488848 Msa0130990:intron 25.0%
!!! TTTGTTTTTGCTTATGTGTT+TGG - chr1_3:61489340-61489359 Msa0130990:intron 25.0%
!!! TTATGTGTTTGGTTTTAAGT+TGG - chr1_3:61489351-61489370 Msa0130990:intron 25.0%
!!! GGACACTTTTTTTTAGTAAA+TGG - chr1_3:61489564-61489583 Msa0130990:intron 25.0%
! AATAATGCACATTGTCAAAT+AGG + chr1_3:61489820-61489839 None:intergenic 25.0%
! TGTGTATTAGTTGAAAAATG+TGG + chr1_3:61489860-61489879 None:intergenic 25.0%
!! AATATCATATAAGGTGTCAT+TGG - chr1_3:61489889-61489908 Msa0130990:intron 25.0%
! AATGTAGACAGACTAATTAA+TGG + chr1_3:61490080-61490099 None:intergenic 25.0%
!! AGTCTGTCTACATTTTATTA+TGG - chr1_3:61490086-61490105 Msa0130990:intron 25.0%
! ATTATGGTTATTATTCCTTC+AGG - chr1_3:61490102-61490121 Msa0130990:intron 25.0%
!! TGTTGAATTCAGTTTTCATA+AGG - chr1_3:61490264-61490283 Msa0130990:intron 25.0%
! TGCCATTAATTTAATGTACT+TGG - chr1_3:61490388-61490407 Msa0130990:intron 25.0%
! GTCCAAGTACATTAAATTAA+TGG + chr1_3:61490393-61490412 None:intergenic 25.0%
!! ACAACAATTTTGTTCCATAA+AGG + chr1_3:61490429-61490448 None:intergenic 25.0%
!!! ACAAAATTGTTGTTTTGACT+CGG - chr1_3:61490436-61490455 Msa0130990:intron 25.0%
! AAATTTACTAGTTGTTCTCT+CGG - chr1_3:61491227-61491246 Msa0130990:intron 25.0%
! GTTTCAACTTATGAATCAAA+TGG + chr1_3:61491308-61491327 None:intergenic 25.0%
! AGATGGAAGTTATTATCTTA+AGG - chr1_3:61491374-61491393 Msa0130990:intron 25.0%
! TATTGATGTTTCAAGGAATA+TGG - chr1_3:61491557-61491576 Msa0130990:intron 25.0%
! AAGTTCATAAGAGAAACTTT+AGG - chr1_3:61492383-61492402 Msa0130990:exon 25.0%
! AGTTCATAAGAGAAACTTTA+GGG - chr1_3:61492384-61492403 Msa0130990:exon 25.0%
AAAAACGGAAAGGATTAATG+TGG + chr1_3:61485914-61485933 None:intergenic 30.0%
GTTAGGAATTGTGACAAAAA+CGG + chr1_3:61485929-61485948 None:intergenic 30.0%
TATGTTATATTGTATAGGGG+AGG + chr1_3:61485978-61485997 None:intergenic 30.0%
! AAGATCATGGAGTTTTCAAA+TGG - chr1_3:61486118-61486137 Msa0130990:CDS 30.0%
TCAAATGGAGATAATAGCAA+TGG - chr1_3:61486133-61486152 Msa0130990:CDS 30.0%
GATAATAGCAATGGTTGTAA+CGG - chr1_3:61486142-61486161 Msa0130990:CDS 30.0%
!! GTGGTTGATAGTATGAATAA+AGG - chr1_3:61486430-61486449 Msa0130990:CDS 30.0%
GATGGCTATTCTATAAAACA+TGG - chr1_3:61487814-61487833 Msa0130990:intron 30.0%
!!! CAATTAGATTTGGCTTTTCA+CGG + chr1_3:61487873-61487892 None:intergenic 30.0%
ACTCCTGAAGAAATAAATGA+CGG - chr1_3:61487946-61487965 Msa0130990:intron 30.0%
TGTTAAGGGAAAAATGAGAT+CGG - chr1_3:61488095-61488114 Msa0130990:intron 30.0%
! ATACAAAGGACACTGATTAA+GGG + chr1_3:61488583-61488602 None:intergenic 30.0%
! TATACAAAGGACACTGATTA+AGG + chr1_3:61488584-61488603 None:intergenic 30.0%
TAGTCTATAGACCCTTAATT+AGG - chr1_3:61488602-61488621 Msa0130990:intron 30.0%
TTAACCAGTGTCCTAATTAA+GGG + chr1_3:61488616-61488635 None:intergenic 30.0%
! TATTGTTTGAAATCACCTAG+TGG - chr1_3:61488700-61488719 Msa0130990:intron 30.0%
ATTGATTGATTGATACCACT+AGG + chr1_3:61488718-61488737 None:intergenic 30.0%
TTTATTACATTGCGAAAGAG+GGG - chr1_3:61488830-61488849 Msa0130990:intron 30.0%
ATAAGTGTGAAATAAGCCAA+GGG + chr1_3:61489451-61489470 None:intergenic 30.0%
AATAAGTGTGAAATAAGCCA+AGG + chr1_3:61489452-61489471 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr1_3:61489480-61489499 Msa0130990:intron 30.0%
!! TCAACTGTGTCACTTAATAT+GGG - chr1_3:61490018-61490037 Msa0130990:intron 30.0%
TATGCAATTGAGTGTAGATA+TGG + chr1_3:61490151-61490170 None:intergenic 30.0%
CTCAATTGCATAACTTTACA+TGG - chr1_3:61490159-61490178 Msa0130990:intron 30.0%
!! ATCCTTGTTGTTTATGTTTG+TGG - chr1_3:61490478-61490497 Msa0130990:intron 30.0%
TGAATAAATTGTGAACAGCT+AGG + chr1_3:61490520-61490539 None:intergenic 30.0%
CTTAACACAATTGTTTGACT+TGG - chr1_3:61490601-61490620 Msa0130990:intron 30.0%
CTTGGCATGAATTAATCATT+TGG - chr1_3:61490619-61490638 Msa0130990:intron 30.0%
ATTCAGAATGAAGATGTGTT+TGG + chr1_3:61490724-61490743 None:intergenic 30.0%
ACATCTTCATTCTGAATTGT+TGG - chr1_3:61490727-61490746 Msa0130990:intron 30.0%
! TTTCTGAATGCTGGAATTTT+CGG - chr1_3:61490802-61490821 Msa0130990:intron 30.0%
! AGGAATCAGATTTGAAATCA+TGG - chr1_3:61490915-61490934 Msa0130990:intron 30.0%
! AATTTGGCCTTCCAATTAAA+AGG + chr1_3:61491044-61491063 None:intergenic 30.0%
AGGCCAAATTCAAAATCTAT+TGG - chr1_3:61491054-61491073 Msa0130990:intron 30.0%
! GGTCCAATAGATTTTGAATT+TGG + chr1_3:61491060-61491079 None:intergenic 30.0%
TCAAAATCTATTGGACCTAA+TGG - chr1_3:61491063-61491082 Msa0130990:intron 30.0%
! ATCGCATATCTATCTTGTTT+AGG + chr1_3:61491438-61491457 None:intergenic 30.0%
!! AATAAGTGGATTGTCATTCA+CGG + chr1_3:61491541-61491560 None:intergenic 30.0%
ATCCACTTATTGATGTTTCA+AGG - chr1_3:61491550-61491569 Msa0130990:intron 30.0%
TTCCTTGAAACATCAATAAG+TGG + chr1_3:61491555-61491574 None:intergenic 30.0%
AGCAAACATAAGTTTACCAA+TGG + chr1_3:61491655-61491674 None:intergenic 30.0%
!! GTATTGAAGTTCTGAACAAT+AGG + chr1_3:61491793-61491812 None:intergenic 30.0%
AACCAAGATGTTAACTCTTT+AGG - chr1_3:61491858-61491877 Msa0130990:intron 30.0%
GATTTACTCAATGTTGTTGA+AGG - chr1_3:61492092-61492111 Msa0130990:CDS 30.0%
! ACCTCAATTTTCCAAAAGAT+TGG - chr1_3:61492236-61492255 Msa0130990:CDS 30.0%
!! TCCAATCTTTTGGAAAATTG+AGG + chr1_3:61492240-61492259 None:intergenic 30.0%
TGATCATATTAGGAACTGAA+GGG + chr1_3:61492337-61492356 None:intergenic 30.0%
TTGATCATATTAGGAACTGA+AGG + chr1_3:61492338-61492357 None:intergenic 30.0%
TTCAGTTCCTAATATGATCA+AGG - chr1_3:61492337-61492356 Msa0130990:CDS 30.0%
CTACATTCCTTGATCATATT+AGG + chr1_3:61492347-61492366 None:intergenic 30.0%
TCTCTTATGAACTTGTACAA+TGG + chr1_3:61492377-61492396 None:intergenic 30.0%
TGATCATAGGAAATGGGAAA+TGG + chr1_3:61485862-61485881 None:intergenic 35.0%
GAATTGTGACAAAAACGGAA+AGG + chr1_3:61485924-61485943 None:intergenic 35.0%
ATTTGTGGGATATAGGTGAA+TGG + chr1_3:61485954-61485973 None:intergenic 35.0%
GAAGAAATTGAGGCTGATTA+AGG + chr1_3:61486079-61486098 None:intergenic 35.0%
TCTTCCATGAATCTTTGCAA+TGG - chr1_3:61486166-61486185 Msa0130990:CDS 35.0%
TTCACCATTGCAAAGATTCA+TGG + chr1_3:61486173-61486192 None:intergenic 35.0%
ACAACAATGACCCTTTGAAT+TGG - chr1_3:61486206-61486225 Msa0130990:CDS 35.0%
CAACAATGACCCTTTGAATT+GGG - chr1_3:61486207-61486226 Msa0130990:CDS 35.0%
AACAATGACCCTTTGAATTG+GGG - chr1_3:61486208-61486227 Msa0130990:CDS 35.0%
! GTTAAACCTTTTCCACCTAA+GGG + chr1_3:61486313-61486332 None:intergenic 35.0%
! TGTTAAACCTTTTCCACCTA+AGG + chr1_3:61486314-61486333 None:intergenic 35.0%
AGGTTTAACAATAGCACAAG+TGG - chr1_3:61486324-61486343 Msa0130990:CDS 35.0%
!! CCAATCACTACTAGCTTTAA+CGG + chr1_3:61486410-61486429 None:intergenic 35.0%
CGTTAAAGCTAGTAGTGATT+GGG - chr1_3:61486408-61486427 Msa0130990:CDS 35.0%
AATAAAGGGACTGATAGCTA+TGG - chr1_3:61486445-61486464 Msa0130990:CDS 35.0%
!! TTGTTTTGTTCTTCTGTGTG+AGG + chr1_3:61486494-61486513 None:intergenic 35.0%
TCACACAGAAGAACAAAACA+AGG - chr1_3:61486493-61486512 Msa0130990:CDS 35.0%
GCTTGATGAAGTTAGGTAAA+AGG - chr1_3:61487329-61487348 Msa0130990:CDS 35.0%
TGTGACCAAACCAAAATTCT+TGG + chr1_3:61487534-61487553 None:intergenic 35.0%
TGTGACCAAACCAAAATTCT+TGG - chr1_3:61487534-61487553 Msa0130990:CDS 35.0%
!!! CAAGACCAAGAATTTTGGTT+TGG + chr1_3:61487542-61487561 None:intergenic 35.0%
CAAACCAAAATTCTTGGTCT+TGG - chr1_3:61487540-61487559 Msa0130990:CDS 35.0%
TATGTGAAACTTGTGATCGA+GGG - chr1_3:61487651-61487670 Msa0130990:CDS 35.0%
TATTCTCGGGAACACAAATT+CGG + chr1_3:61487790-61487809 None:intergenic 35.0%
AATAGCCATCGTGATATTCT+CGG + chr1_3:61487804-61487823 None:intergenic 35.0%
CGTGAAAAGCCAAATCTAAT+TGG - chr1_3:61487871-61487890 Msa0130990:intron 35.0%
AAAAGCCAAATCTAATTGGC+TGG - chr1_3:61487875-61487894 Msa0130990:intron 35.0%
TAATTGGCTGGAACTGTATT+CGG - chr1_3:61487887-61487906 Msa0130990:intron 35.0%
CTCCTGAAGAAATAAATGAC+GGG - chr1_3:61487947-61487966 Msa0130990:intron 35.0%
! AACCCGTCATTTATTTCTTC+AGG + chr1_3:61487952-61487971 None:intergenic 35.0%
GTTAAGGGAAAAATGAGATC+GGG - chr1_3:61488096-61488115 Msa0130990:intron 35.0%
AGGGTCTATAGACTATACAA+AGG + chr1_3:61488597-61488616 None:intergenic 35.0%
GTTAACCAGTGTCCTAATTA+AGG + chr1_3:61488617-61488636 None:intergenic 35.0%
CGATTTCACTCGCAAATAAA+TGG + chr1_3:61488882-61488901 None:intergenic 35.0%
TTTATTTGCGAGTGAAATCG+TGG - chr1_3:61488882-61488901 Msa0130990:intron 35.0%
TGCATGAATTCAGCACTTTA+TGG + chr1_3:61489074-61489093 None:intergenic 35.0%
CACTATAGTTATTAGACGGT+TGG + chr1_3:61489290-61489309 None:intergenic 35.0%
CACTTCTACTGTTGAATGAA+TGG + chr1_3:61489644-61489663 None:intergenic 35.0%
TAGTTACAAATTCATGACGG+TGG - chr1_3:61489752-61489771 Msa0130990:intron 35.0%
AGTTACAAATTCATGACGGT+GGG - chr1_3:61489753-61489772 Msa0130990:intron 35.0%
!! AGAGAGTATTGTGCAATTTC+TGG + chr1_3:61489779-61489798 None:intergenic 35.0%
!! GTCAACTGTGTCACTTAATA+TGG - chr1_3:61490017-61490036 Msa0130990:intron 35.0%
! ACGGAGGGAGTATATTATAA+TGG - chr1_3:61490041-61490060 Msa0130990:intron 35.0%
! GGGAGTATATTATAATGGCT+CGG - chr1_3:61490046-61490065 Msa0130990:intron 35.0%
TTTCATAAGGCAGAACATCA+AGG - chr1_3:61490277-61490296 Msa0130990:intron 35.0%
TTCATAAGGCAGAACATCAA+GGG - chr1_3:61490278-61490297 Msa0130990:intron 35.0%
AACATCAAGGGATGTTCATA+AGG - chr1_3:61490290-61490309 Msa0130990:intron 35.0%
! ATTTTGCAGGCTTGATGTTT+TGG - chr1_3:61490352-61490371 Msa0130990:intron 35.0%
CAGTTACAGTTGTACCTTTA+TGG - chr1_3:61490412-61490431 Msa0130990:intron 35.0%
AGCCACAAACATAAACAACA+AGG + chr1_3:61490483-61490502 None:intergenic 35.0%
AGAATCAACACATTGCTTCA+AGG - chr1_3:61490886-61490905 Msa0130990:intron 35.0%
ACATTGCTTCAAGGATATTC+AGG - chr1_3:61490895-61490914 Msa0130990:intron 35.0%
!! GAAGACATGGTGTTATGTTA+TGG + chr1_3:61490963-61490982 None:intergenic 35.0%
ATTCCTTTAGCATATGTTGC+TGG - chr1_3:61491018-61491037 Msa0130990:intron 35.0%
!!! TATGTTGCTGGCCTTTTAAT+TGG - chr1_3:61491030-61491049 Msa0130990:intron 35.0%
!! ACAAGTTCTGAATGCTAAAG+AGG - chr1_3:61491086-61491105 Msa0130990:intron 35.0%
!! TTTGAGTTGCAACCTAAAGA+AGG - chr1_3:61491141-61491160 Msa0130990:intron 35.0%
ACTAGTGCTAAACCTTCTTT+AGG + chr1_3:61491156-61491175 None:intergenic 35.0%
ATCAAATGGTCAGTGAATTG+AGG + chr1_3:61491294-61491313 None:intergenic 35.0%
! CATAAGTTGAAACTTCATCC+TGG - chr1_3:61491315-61491334 Msa0130990:intron 35.0%
TTATCCATCGATACACCAAT+CGG + chr1_3:61491612-61491631 None:intergenic 35.0%
AAGTTTACCAATGGAAGCAA+TGG + chr1_3:61491646-61491665 None:intergenic 35.0%
GTGAATGACATCTATAGCAA+CGG - chr1_3:61491690-61491709 Msa0130990:intron 35.0%
AGCCTAAAGAGTTAACATCT+TGG + chr1_3:61491863-61491882 None:intergenic 35.0%
! TATTGATCTAAGGCACATTG+AGG - chr1_3:61491965-61491984 Msa0130990:intron 35.0%
GTTGATCATGCATTGCAAAA+TGG - chr1_3:61492191-61492210 Msa0130990:CDS 35.0%
TGCATTGCAAAATGGTGATA+AGG - chr1_3:61492199-61492218 Msa0130990:CDS 35.0%
ATTGCAAAATGGTGATAAGG+AGG - chr1_3:61492202-61492221 Msa0130990:CDS 35.0%
TAAAGAGGTGGAAAATGCTA+GGG - chr1_3:61492292-61492311 Msa0130990:CDS 35.0%
AAGGTTTATTGATCCCATGT+TGG - chr1_3:61492484-61492503 Msa0130990:five_prime_UTR 35.0%
TCCTTTAGACAATCCAACAT+GGG + chr1_3:61492500-61492519 None:intergenic 35.0%
GATATAGGTGAATGGCAGTT+AGG + chr1_3:61485946-61485965 None:intergenic 40.0%
TGTATAGGGGAGGAATTTGT+GGG + chr1_3:61485968-61485987 None:intergenic 40.0%
TTGTATAGGGGAGGAATTTG+TGG + chr1_3:61485969-61485988 None:intergenic 40.0%
! CAAAGGGTCATTGTTGTTAC+TGG + chr1_3:61486203-61486222 None:intergenic 40.0%
TATGGCTGCAGATTCTATGA+AGG - chr1_3:61486231-61486250 Msa0130990:CDS 40.0%
ATGGCTGCAGATTCTATGAA+GGG - chr1_3:61486232-61486251 Msa0130990:CDS 40.0%
!! ATCACTACTAGCTTTAACGG+CGG + chr1_3:61486407-61486426 None:intergenic 40.0%
CCGTTAAAGCTAGTAGTGAT+TGG - chr1_3:61486407-61486426 Msa0130990:CDS 40.0%
TAAAGCTAGTAGTGATTGGG+TGG - chr1_3:61486411-61486430 Msa0130990:CDS 40.0%
CACAGAAGAACAAAACAAGG+TGG - chr1_3:61486496-61486515 Msa0130990:CDS 40.0%
CCTGATGAGTTCACTTTGAA+GGG + chr1_3:61486524-61486543 None:intergenic 40.0%
ACCTGATGAGTTCACTTTGA+AGG + chr1_3:61486525-61486544 None:intergenic 40.0%
!!! ATTTTCCCTTACTTTGGGGT+AGG - chr1_3:61487289-61487308 Msa0130990:CDS 40.0%
AACTTCATCAAGCAGATCAC+TGG + chr1_3:61487322-61487341 None:intergenic 40.0%
GTGATCTGCTTGATGAAGTT+AGG - chr1_3:61487322-61487341 Msa0130990:CDS 40.0%
CAGAAGGAGTAAATCTTGTG+TGG - chr1_3:61487389-61487408 Msa0130990:CDS 40.0%
CAAACCAAAATTCTTGGTCC+TGG + chr1_3:61487416-61487435 None:intergenic 40.0%
!!! CAGGACCAAGAATTTTGGTT+TGG - chr1_3:61487414-61487433 Msa0130990:CDS 40.0%
GAGATAAGAGAAGAGAGAGA+AGG + chr1_3:61487460-61487479 None:intergenic 40.0%
! TGGACCAAGACCAAGAATTT+TGG + chr1_3:61487547-61487566 None:intergenic 40.0%
CTATGTGAAACTTGTGATCG+AGG - chr1_3:61487650-61487669 Msa0130990:CDS 40.0%
ATTCTCGGGAACACAAATTC+GGG + chr1_3:61487789-61487808 None:intergenic 40.0%
ATAGCCATCGTGATATTCTC+GGG + chr1_3:61487803-61487822 None:intergenic 40.0%
GGTGGTATTGTTTGTGATGT+GGG + chr1_3:61487842-61487861 None:intergenic 40.0%
! TGGCTTTTCACGGAAAACAT+GGG + chr1_3:61487863-61487882 None:intergenic 40.0%
!! TTGGCTTTTCACGGAAAACA+TGG + chr1_3:61487864-61487883 None:intergenic 40.0%
CAGTTCCAGCCAATTAGATT+TGG + chr1_3:61487883-61487902 None:intergenic 40.0%
AATTGGCTGGAACTGTATTC+GGG - chr1_3:61487888-61487907 Msa0130990:intron 40.0%
AACTGTATTCGGGAACTACT+CGG - chr1_3:61487898-61487917 Msa0130990:intron 40.0%
TAGACCCTTAATTAGGACAC+TGG - chr1_3:61488609-61488628 Msa0130990:intron 40.0%
TGGTGTGTAAGAGGTGAATT+GGG + chr1_3:61489054-61489073 None:intergenic 40.0%
ATGGTGTGTAAGAGGTGAAT+TGG + chr1_3:61489055-61489074 None:intergenic 40.0%
AGCACTTTATGGTGTGTAAG+AGG + chr1_3:61489063-61489082 None:intergenic 40.0%
CTCAATTAATTCGGGAAGGA+GGG + chr1_3:61489428-61489447 None:intergenic 40.0%
AGCCAAGGGCTCAATTAATT+CGG + chr1_3:61489437-61489456 None:intergenic 40.0%
TTCATATACTACCTCCGTCT+CGG + chr1_3:61489600-61489619 None:intergenic 40.0%
!! AACAGTAGAAGTGTCAGTGT+CGG - chr1_3:61489651-61489670 Msa0130990:intron 40.0%
!! CTGTGTCACTTAATATGGGA+CGG - chr1_3:61490022-61490041 Msa0130990:intron 40.0%
! TATTATAATGGCTCGGCTGA+CGG - chr1_3:61490053-61490072 Msa0130990:intron 40.0%
! GAGTTGTACACTCATTTTGC+AGG - chr1_3:61490339-61490358 Msa0130990:intron 40.0%
!! TTTGACTCGGCATGATGATT+TGG - chr1_3:61490449-61490468 Msa0130990:intron 40.0%
GTATGACTCATTCAACGTGT+CGG - chr1_3:61490695-61490714 Msa0130990:intron 40.0%
TGCAACAGATTTCTGAATGC+TGG - chr1_3:61490793-61490812 Msa0130990:intron 40.0%
! AATGCTGGAATTTTCGGCAA+TGG - chr1_3:61490808-61490827 Msa0130990:intron 40.0%
ACACCATGTCTTCCATTAAG+AGG - chr1_3:61490970-61490989 Msa0130990:intron 40.0%
GTACCTCTTAATGGAAGACA+TGG + chr1_3:61490976-61490995 None:intergenic 40.0%
GCAGTGATTGTACCTCTTAA+TGG + chr1_3:61490985-61491004 None:intergenic 40.0%
!!! TTGCTGGCCTTTTAATTGGA+AGG - chr1_3:61491034-61491053 Msa0130990:intron 40.0%
GCATTCAGAACTTGTCCATT+AGG + chr1_3:61491081-61491100 None:intergenic 40.0%
!! AAAGAGGCATTTCAACTAGC+TGG - chr1_3:61491102-61491121 Msa0130990:intron 40.0%
CAACTAGCTGGAATTGAAAC+TGG - chr1_3:61491114-61491133 Msa0130990:intron 40.0%
GAAGGTTTAGCACTAGTGAA+TGG - chr1_3:61491159-61491178 Msa0130990:intron 40.0%
! ACTTTTGTCTGCGATTTTCG+CGG - chr1_3:61491251-61491270 Msa0130990:intron 40.0%
! ATTTTCGCGGAAGTTATGCT+AGG - chr1_3:61491264-61491283 Msa0130990:intron 40.0%
ACTTCATCCTGGTCAAATTG+AGG - chr1_3:61491326-61491345 Msa0130990:intron 40.0%
AATTGAGGCTGCTGCTATTA+TGG - chr1_3:61491341-61491360 Msa0130990:intron 40.0%
! TCTTGTTTAGGCTTCTGAAG+TGG + chr1_3:61491426-61491445 None:intergenic 40.0%
TGTCGAATCACTTCAATCTG+CGG + chr1_3:61491486-61491505 None:intergenic 40.0%
ACGCAACAAAGATGATTGAG+AGG - chr1_3:61491505-61491524 Msa0130990:intron 40.0%
CGCAACAAAGATGATTGAGA+GGG - chr1_3:61491506-61491525 Msa0130990:intron 40.0%
TCAAGGAATATGGCACTTCA+TGG - chr1_3:61491567-61491586 Msa0130990:intron 40.0%
CTTCATGGAGGAAATTTCCA+AGG - chr1_3:61491582-61491601 Msa0130990:intron 40.0%
AATTTCCAAGGTACACCGAT+TGG - chr1_3:61491594-61491613 Msa0130990:intron 40.0%
CGTAATCCAAACTTGGATTG+CGG + chr1_3:61491740-61491759 None:intergenic 40.0%
CGCAATCCAAGTTTGGATTA+CGG - chr1_3:61491738-61491757 Msa0130990:intron 40.0%
TTGAAGCCGTAATCCAAACT+TGG + chr1_3:61491747-61491766 None:intergenic 40.0%
AGTTTGGATTACGGCTTCAA+AGG - chr1_3:61491747-61491766 Msa0130990:intron 40.0%
CAAAGGAGCAGAAATTGCAA+TGG - chr1_3:61491764-61491783 Msa0130990:intron 40.0%
TTCAGCACTTTGAACATGAC+TGG + chr1_3:61491832-61491851 None:intergenic 40.0%
TGTGCCAAGCTATTGATCTA+AGG - chr1_3:61491955-61491974 Msa0130990:intron 40.0%
TGTGCCTTAGATCAATAGCT+TGG + chr1_3:61491962-61491981 None:intergenic 40.0%
ACCAACTGTGAGAATTCTCT+TGG + chr1_3:61492033-61492052 None:intergenic 40.0%
!! ATTCTCACAGTTGGTGTCAA+TGG - chr1_3:61492038-61492057 Msa0130990:CDS 40.0%
!! TCCATCAAGGTTTTGTGAGA+AGG - chr1_3:61492070-61492089 Msa0130990:CDS 40.0%
TCCTTCTCACAAAACCTTGA+TGG + chr1_3:61492074-61492093 None:intergenic 40.0%
! CCTCAAAAGCTCCAATCTTT+TGG + chr1_3:61492250-61492269 None:intergenic 40.0%
! CCAAAAGATTGGAGCTTTTG+AGG - chr1_3:61492247-61492266 Msa0130990:CDS 40.0%
! TAAGACCCTTTTGCCTAAAG+AGG - chr1_3:61492277-61492296 Msa0130990:CDS 40.0%
TTCCACCTCTTTAGGCAAAA+GGG + chr1_3:61492285-61492304 None:intergenic 40.0%
TTTCCACCTCTTTAGGCAAA+AGG + chr1_3:61492286-61492305 None:intergenic 40.0%
! CTAGCATTTTCCACCTCTTT+AGG + chr1_3:61492293-61492312 None:intergenic 40.0%
CTAAAGAGGTGGAAAATGCT+AGG - chr1_3:61492291-61492310 Msa0130990:CDS 40.0%
!! GCTAGGGTTCAAGTTGAAAA+TGG - chr1_3:61492308-61492327 Msa0130990:CDS 40.0%
TGCTGACAGGTGAGAAAATT+AGG - chr1_3:61492414-61492433 Msa0130990:five_prime_UTR 40.0%
! GTTTTCACAGCATTGTGTGA+TGG - chr1_3:61492461-61492480 Msa0130990:five_prime_UTR 40.0%
TCCCATGTTGGATTGTCTAA+AGG - chr1_3:61492496-61492515 Msa0130990:five_prime_UTR 40.0%
CTCCTTTAGACAATCCAACA+TGG + chr1_3:61492501-61492520 None:intergenic 40.0%
TGTTGGATTGTCTAAAGGAG+TGG - chr1_3:61492501-61492520 Msa0130990:five_prime_UTR 40.0%
GATTGTCTAAAGGAGTGGAA+TGG - chr1_3:61492506-61492525 Msa0130990:five_prime_UTR 40.0%
CAATCCTAGCAAATAGGTAG+AGG + chr1_3:61492536-61492555 None:intergenic 40.0%
GTAGCACAATCCTAGCAAAT+AGG + chr1_3:61492542-61492561 None:intergenic 40.0%
GGGAGGAATTTGTGGGATAT+AGG + chr1_3:61485961-61485980 None:intergenic 45.0%
TGACCCTTTGAATTGGGGTA+TGG - chr1_3:61486213-61486232 Msa0130990:CDS 45.0%
CAGCCATACCCCAATTCAAA+GGG + chr1_3:61486219-61486238 None:intergenic 45.0%
AGCGTATGGTAGAGGAATAC+CGG - chr1_3:61486275-61486294 Msa0130990:CDS 45.0%
AACAATAGCACAAGTGGCTG+CGG - chr1_3:61486330-61486349 Msa0130990:CDS 45.0%
ATAGCTATGGAGTGACCACT+GGG - chr1_3:61486458-61486477 Msa0130990:CDS 45.0%
CCCTTCAAAGTGAACTCATC+AGG - chr1_3:61486521-61486540 Msa0130990:CDS 45.0%
CCAACTAAAAACCGAGACAC+AGG + chr1_3:61487236-61487255 None:intergenic 45.0%
!!! CCTGTGTCTCGGTTTTTAGT+TGG - chr1_3:61487233-61487252 Msa0130990:CDS 45.0%
GAGTAAATCTTGTGTGGACC+AGG - chr1_3:61487395-61487414 Msa0130990:CDS 45.0%
! TGGACCAGGACCAAGAATTT+TGG - chr1_3:61487409-61487428 Msa0130990:CDS 45.0%
CTGTTCGAGAAACACTTGTG+TGG + chr1_3:61487567-61487586 None:intergenic 45.0%
TGTTCCCGAGAATATCACGA+TGG - chr1_3:61487796-61487815 Msa0130990:intron 45.0%
GGGTGGTATTGTTTGTGATG+TGG + chr1_3:61487843-61487862 None:intergenic 45.0%
! CTTTTCACGGAAAACATGGG+TGG + chr1_3:61487860-61487879 None:intergenic 45.0%
ACTGTATTCGGGAACTACTC+GGG - chr1_3:61487899-61487918 Msa0130990:intron 45.0%
CATGCAATTCCATAGCTGCA+GGG + chr1_3:61488922-61488941 None:intergenic 45.0%
ACATGCAATTCCATAGCTGC+AGG + chr1_3:61488923-61488942 None:intergenic 45.0%
TGTGTAAGAGGTGAATTGGG+GGG + chr1_3:61489051-61489070 None:intergenic 45.0%
GTGTGTAAGAGGTGAATTGG+GGG + chr1_3:61489052-61489071 None:intergenic 45.0%
GGTGTGTAAGAGGTGAATTG+GGG + chr1_3:61489053-61489072 None:intergenic 45.0%
GCTCAATTAATTCGGGAAGG+AGG + chr1_3:61489429-61489448 None:intergenic 45.0%
AGGGCTCAATTAATTCGGGA+AGG + chr1_3:61489432-61489451 None:intergenic 45.0%
TCCCGAATTAATTGAGCCCT+TGG - chr1_3:61489432-61489451 Msa0130990:intron 45.0%
GCCAAGGGCTCAATTAATTC+GGG + chr1_3:61489436-61489455 None:intergenic 45.0%
ATGGCTCAGTTAATCCGAGA+CGG - chr1_3:61489583-61489602 Msa0130990:intron 45.0%
! TGTCACTTAATATGGGACGG+AGG - chr1_3:61490025-61490044 Msa0130990:intron 45.0%
GTCACTTAATATGGGACGGA+GGG - chr1_3:61490026-61490045 Msa0130990:intron 45.0%
TTCCTTCAGGTCCATCTACA+TGG - chr1_3:61490115-61490134 Msa0130990:intron 45.0%
TACCATGTAGATGGACCTGA+AGG + chr1_3:61490120-61490139 None:intergenic 45.0%
GTGCTATGCTACCATGTAGA+TGG + chr1_3:61490129-61490148 None:intergenic 45.0%
! AGAGGTACAATCACTGCATC+AGG - chr1_3:61490988-61491007 Msa0130990:intron 45.0%
AGGCCAGCAACATATGCTAA+AGG + chr1_3:61491024-61491043 None:intergenic 45.0%
CTAGTGAATGGTACTGCAGT+TGG - chr1_3:61491171-61491190 Msa0130990:intron 45.0%
AATGGTACTGCAGTTGGATC+AGG - chr1_3:61491177-61491196 Msa0130990:intron 45.0%
TACTGCAGTTGGATCAGGTT+TGG - chr1_3:61491182-61491201 Msa0130990:intron 45.0%
! TGGATCAGGTTTGGCTTCAT+TGG - chr1_3:61491191-61491210 Msa0130990:intron 45.0%
AGGAATATGGCACTTCATGG+AGG - chr1_3:61491570-61491589 Msa0130990:intron 45.0%
ATACACCAATCGGTGTACCT+TGG + chr1_3:61491602-61491621 None:intergenic 45.0%
! TACACCGATTGGTGTATCGA+TGG - chr1_3:61491605-61491624 Msa0130990:intron 45.0%
CGTTTAGCCATTGCTTCCAT+TGG - chr1_3:61491636-61491655 Msa0130990:intron 45.0%
CTTTGAACATGACTGGTGAC+AGG + chr1_3:61491825-61491844 None:intergenic 45.0%
ACTCATGTCATCCACCTTCT+TGG - chr1_3:61491926-61491945 Msa0130990:intron 45.0%
TTGGCACAATGCTACCAAGA+AGG + chr1_3:61491943-61491962 None:intergenic 45.0%
GCCAAGAGAATTCTCACAGT+TGG - chr1_3:61492029-61492048 Msa0130990:CDS 45.0%
ATGGTGAGTTGCATCCATCA+AGG - chr1_3:61492057-61492076 Msa0130990:CDS 45.0%
GTCTCAGCTTCTGCATTAGA+GGG + chr1_3:61492163-61492182 None:intergenic 45.0%
TGTCTCAGCTTCTGCATTAG+AGG + chr1_3:61492164-61492183 None:intergenic 45.0%
!! TTAGGGACAAGTTTGCTGAC+AGG - chr1_3:61492401-61492420 Msa0130990:five_prime_UTR 45.0%
GGTGAGAAAATTAGGTCACC+TGG - chr1_3:61492422-61492441 Msa0130990:five_prime_UTR 45.0%
GAAAATTAGGTCACCTGGTG+AGG - chr1_3:61492427-61492446 Msa0130990:five_prime_UTR 45.0%
ACCTGGTGAGGAATGTGATA+AGG - chr1_3:61492439-61492458 Msa0130990:five_prime_UTR 45.0%
ACCTTATCACATTCCTCACC+AGG + chr1_3:61492443-61492462 None:intergenic 45.0%
! TCACAGCATTGTGTGATGGA+AGG - chr1_3:61492465-61492484 Msa0130990:five_prime_UTR 45.0%
TGCTCCTCTACCTATTTGCT+AGG - chr1_3:61492529-61492548 Msa0130990:five_prime_UTR 45.0%
!! TATATAATTAATTTATGTTA+AGG - chr1_3:61488080-61488099 Msa0130990:intron 5.0%
!! ATATAATTAATTTATGTTAA+GGG - chr1_3:61488081-61488100 Msa0130990:intron 5.0%
!!! AAATACTTAATATTTTATTT+GGG + chr1_3:61489126-61489145 None:intergenic 5.0%
!! ATTATAACAATATTAAATAT+GGG + chr1_3:61490185-61490204 None:intergenic 5.0%
!! AATTATAACAATATTAAATA+TGG + chr1_3:61490186-61490205 None:intergenic 5.0%
GCAGCCATACCCCAATTCAA+AGG + chr1_3:61486220-61486239 None:intergenic 50.0%
GAAGGGTAGTCACCTAGATG+AGG - chr1_3:61486249-61486268 Msa0130990:CDS 50.0%
CCATACGCTTCACCTCATCT+AGG + chr1_3:61486264-61486283 None:intergenic 50.0%
CCTAGATGAGGTGAAGCGTA+TGG - chr1_3:61486261-61486280 Msa0130990:CDS 50.0%
TGAGGTGAAGCGTATGGTAG+AGG - chr1_3:61486267-61486286 Msa0130990:CDS 50.0%
GGTAGAGGAATACCGGAAAC+CGG - chr1_3:61486282-61486301 Msa0130990:CDS 50.0%
! TTTCCACCTAAGGGCACAAC+CGG + chr1_3:61486304-61486323 None:intergenic 50.0%
GTTGTGCCCTTAGGTGGAAA+AGG - chr1_3:61486304-61486323 Msa0130990:CDS 50.0%
GCGGTTGCAACTCATAGTAC+CGG - chr1_3:61486349-61486368 Msa0130990:CDS 50.0%
GATAGCTATGGAGTGACCAC+TGG - chr1_3:61486457-61486476 Msa0130990:CDS 50.0%
TATGGAGTGACCACTGGGTT+TGG - chr1_3:61486463-61486482 Msa0130990:CDS 50.0%
GCACACCTACCCCAAAGTAA+GGG + chr1_3:61487297-61487316 None:intergenic 50.0%
AGCACACCTACCCCAAAGTA+AGG + chr1_3:61487298-61487317 None:intergenic 50.0%
GGAACTACTCGGGACAATTC+TGG - chr1_3:61487909-61487928 Msa0130990:intron 50.0%
CTACTCGGGACAATTCTGGT+CGG - chr1_3:61487913-61487932 Msa0130990:intron 50.0%
TACTCGGGACAATTCTGGTC+GGG - chr1_3:61487914-61487933 Msa0130990:intron 50.0%
TGTAGATCACCCTGCAGCTA+TGG - chr1_3:61488910-61488929 Msa0130990:intron 50.0%
TGTAAGAGGTGAATTGGGGG+GGG + chr1_3:61489049-61489068 None:intergenic 50.0%
GTGTAAGAGGTGAATTGGGG+GGG + chr1_3:61489050-61489069 None:intergenic 50.0%
ACTTTCACATAGCCGCTGTG+TGG - chr1_3:61489262-61489281 Msa0130990:intron 50.0%
CTTTCACATAGCCGCTGTGT+GGG - chr1_3:61489263-61489282 Msa0130990:intron 50.0%
AACCAACATGCCTGCTCTTG+TGG + chr1_3:61490866-61490885 None:intergenic 50.0%
CGGCTAGCAGTGAGATTTGA+AGG + chr1_3:61491720-61491739 None:intergenic 50.0%
TGCTAGCCGCAATCCAAGTT+TGG - chr1_3:61491731-61491750 Msa0130990:intron 50.0%
! GACTGGTGACAGGATTAGCA+AGG + chr1_3:61491815-61491834 None:intergenic 50.0%
GCACAATGCTACCAAGAAGG+TGG + chr1_3:61491940-61491959 None:intergenic 50.0%
! GAGGGTATGTAGCACTGCAA+GGG + chr1_3:61492145-61492164 None:intergenic 50.0%
! AGAGGGTATGTAGCACTGCA+AGG + chr1_3:61492146-61492165 None:intergenic 50.0%
! GACCCTTTTGCCTAAAGAGG+TGG - chr1_3:61492280-61492299 Msa0130990:CDS 50.0%
! CTAAGGGCACAACCGGTTTC+CGG + chr1_3:61486297-61486316 None:intergenic 55.0%
AAACCGGTTGTGCCCTTAGG+TGG - chr1_3:61486298-61486317 Msa0130990:CDS 55.0%
!! TGCAACTCATAGTACCGGCG+TGG - chr1_3:61486354-61486373 Msa0130990:CDS 55.0%
!! AACTCATAGTACCGGCGTGG+CGG - chr1_3:61486357-61486376 Msa0130990:CDS 55.0%
TGAGGTTGCACCAAACCCAG+TGG + chr1_3:61486476-61486495 None:intergenic 55.0%
TAAGAGGTGAATTGGGGGGG+GGG + chr1_3:61489047-61489066 None:intergenic 55.0%
GTAAGAGGTGAATTGGGGGG+GGG + chr1_3:61489048-61489067 None:intergenic 55.0%
GCTCAGTTAATCCGAGACGG+AGG - chr1_3:61489586-61489605 Msa0130990:intron 55.0%
ATGCCTGCTCTTGTGGCTGT+GGG + chr1_3:61490859-61490878 None:intergenic 55.0%
AGCCACAAGAGCAGGCATGT+TGG - chr1_3:61490861-61490880 Msa0130990:intron 55.0%
GCAGCAGCCTCAATTTGACC+AGG + chr1_3:61491336-61491355 None:intergenic 55.0%
CGATTCGAACATCACCGCAG+TGG - chr1_3:61491454-61491473 Msa0130990:intron 55.0%
CGGAAACCGGTTGTGCCCTT+AGG - chr1_3:61486295-61486314 Msa0130990:CDS 60.0%
AAGAGGTGAATTGGGGGGGG+GGG + chr1_3:61489046-61489065 None:intergenic 60.0%
AGACGGTTGGACCCACACAG+CGG + chr1_3:61489277-61489296 None:intergenic 60.0%
CATGCCTGCTCTTGTGGCTG+TGG + chr1_3:61490860-61490879 None:intergenic 60.0%
CGAACATCACCGCAGTGGCT+TGG - chr1_3:61491459-61491478 Msa0130990:intron 60.0%
ATCTGCGGTCCAAGCCACTG+CGG + chr1_3:61491471-61491490 None:intergenic 60.0%
TACCGGCGTGGCGGTTGAAC+TGG - chr1_3:61486366-61486385 Msa0130990:CDS 65.0%
GGCGGTTGAACTGGCGGAAG+AGG - chr1_3:61486375-61486394 Msa0130990:CDS 65.0%
AGAGGTGAATTGGGGGGGGG+GGG + chr1_3:61489045-61489064 None:intergenic 65.0%
CCTGCTCTTGTGGCTGTGGG+AGG + chr1_3:61490856-61490875 None:intergenic 65.0%
CCTCCCACAGCCACAAGAGC+AGG - chr1_3:61490853-61490872 Msa0130990:intron 65.0%
CGCCAGTTCAACCGCCACGC+CGG + chr1_3:61486371-61486390 None:intergenic 70.0%
CGGCGTGGCGGTTGAACTGG+CGG - chr1_3:61486369-61486388 Msa0130990:CDS 70.0%
AGGTGAATTGGGGGGGGGGG+GGG + chr1_3:61489043-61489062 None:intergenic 70.0%
GAGGTGAATTGGGGGGGGGG+GGG + chr1_3:61489044-61489063 None:intergenic 70.0%
TGAATTGGGGGGGGGGGGGG+GGG + chr1_3:61489040-61489059 None:intergenic 75.0%
GTGAATTGGGGGGGGGGGGG+GGG + chr1_3:61489041-61489060 None:intergenic 75.0%
GGTGAATTGGGGGGGGGGGG+GGG + chr1_3:61489042-61489061 None:intergenic 75.0%
! AATTGGGGGGGGGGGGGGGG+GGG + chr1_3:61489038-61489057 None:intergenic 80.0%
! GAATTGGGGGGGGGGGGGGG+GGG + chr1_3:61489039-61489058 None:intergenic 80.0%
! ATTGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489037-61489056 None:intergenic 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489036-61489055 None:intergenic 90.0%
! GGGGGGGGGGGGGGGGGGTG+TGG + chr1_3:61489017-61489036 None:intergenic 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + chr1_3:61489035-61489054 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 61485809 61492703 61485809 ID=Msa0130990;Name=Msa0130990
chr1_3 mRNA 61485809 61492703 61485809 ID=Msa0130990-mRNA-1;Parent=Msa0130990;Name=Msa0130990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=315|1|1|1|1|1|2|153|722
chr1_3 exon 61485809 61487711 61485809 ID=Msa0130990-mRNA-1:exon:20468;Parent=Msa0130990-mRNA-1
chr1_3 exon 61491970 61492703 61491970 ID=Msa0130990-mRNA-1:exon:20467;Parent=Msa0130990-mRNA-1
chr1_3 five_prime_UTR 61492389 61492703 61492389 ID=Msa0130990-mRNA-1:five_prime_utr;Parent=Msa0130990-mRNA-1
chr1_3 CDS 61491970 61492388 61491970 ID=Msa0130990-mRNA-1:cds;Parent=Msa0130990-mRNA-1
chr1_3 CDS 61485962 61487711 61485962 ID=Msa0130990-mRNA-1:cds;Parent=Msa0130990-mRNA-1
chr1_3 three_prime_UTR 61485809 61485961 61485809 ID=Msa0130990-mRNA-1:three_prime_utr;Parent=Msa0130990-mRNA-1
Gene Sequence

>Msa0130990

ATGGAGTTTTCAAATGGAGATAATAGCAATGGTTGTAACGGTTCTTCCATGAATCTTTGCAATGGTGAAACAAAAACCAGTAACAACAATGACCCTTTGAATTGGGGTATGGCTGCAGATTCTATGAAGGGTAGTCACCTAGATGAGGTGAAGCGTATGGTAGAGGAATACCGGAAACCGGTTGTGCCCTTAGGTGGAAAAGGTTTAACAATAGCACAAGTGGCTGCGGTTGCAACTCATAGTACCGGCGTGGCGGTTGAACTGGCGGAAGAGGCACGCTCCGCCGTTAAAGCTAGTAGTGATTGGGTGGTTGATAGTATGAATAAAGGGACTGATAGCTATGGAGTGACCACTGGGTTTGGTGCAACCTCACACAGAAGAACAAAACAAGGTGGTGCCCTTCAAAGTGAACTCATCAGATTTCTGAATGCTGGAATTTTCGGCAATGGAACAGAATCATCTCAGACATTACCTCCCACAGCCACAAGAGCAGGCATGTTGGTTAGAATCAACACATTGCTTCAAGGATATTCAGGAATCAGATTTGAAATCATGGAAGCAATAGCAAAATTTCTGAACCATAACATAACACCATGTCTTCCATTAAGAGGTACAATCACTGCATCAGGTGATTTAATTCCTTTAGCATATGTTGCTGGCCTTTTAATTGGAAGGCCAAATTCAAAATCTATTGGACCTAATGGACAAGTTCTGAATGCTAAAGAGGCATTTCAACTAGCTGGAATTGAAACTGGTTTCTTTGAGTTGCAACCTAAAGAAGGTTTAGCACTAGTGAATGGTACTGCAGTTGGATCAGGTTTGGCTTCATTGGTTCTTTTTGATACAAATTTACTAGTTGTTCTCTCGGAACTTTTGTCTGCGATTTTCGCGGAAGTTATGCTAGGAAAACCTCAATTCACTGACCATTTGATTCATAAGTTGAAACTTCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACATATTTTAGATGGAAGTTATTATCTTAAGGCTGCACAAAAAGTACATGAGATTAATCCACTTCAGAAGCCTAAACAAGATAGATATGCGATTCGAACATCACCGCAGTGGCTTGGACCGCAGATTGAAGTGATTCGACACGCAACAAAGATGATTGAGAGGGAGATAAATTCCGTGAATGACAATCCACTTATTGATGTTTCAAGGAATATGGCACTTCATGGAGGAAATTTCCAAGGTACACCGATTGGTGTATCGATGGATAACACTCGTTTAGCCATTGCTTCCATTGGTAAACTTATGTTTGCTCAATTCACTGAGCTTGTGAATGACATCTATAGCAACGGATTGCCTTCAAATCTCACTGCTAGCCGCAATCCAAGTTTGGATTACGGCTTCAAAGGAGCAGAAATTGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCTAATCCTGTCACCAGTCATGTTCAAAGTGCTGAACAACATAACCAAGATGTTAACTCTTTAGGCTTGATTTCAGCAAGAAAAACAGCTGAAGCAGTTGAAATATTGAAACTCATGTCATCCACCTTCTTGGTAGCATTGTGCCAAGCTATTGATCTAAGGCACATTGAGGAAAACTTGAAAAGTGTTGTCAAGAACACTGTGAGTCAAGTAGCCAAGAGAATTCTCACAGTTGGTGTCAATGGTGAGTTGCATCCATCAAGGTTTTGTGAGAAGGATTTACTCAATGTTGTTGAAGGTGAGTACGTTTTCGCTTACGTTGATGACCCTTGCAGTGCTACATACCCTCTAATGCAGAAGCTGAGACATGTACTAGTTGATCATGCATTGCAAAATGGTGATAAGGAGGCAAATTCAAGCACCTCAATTTTCCAAAAGATTGGAGCTTTTGAGGAAGAGCTTAAGACCCTTTTGCCTAAAGAGGTGGAAAATGCTAGGGTTCAAGTTGAAAATGGAAACCCTTCAGTTCCTAATATGATCAAGGAATGTAGATCATATCCATTGTACAAGTTCATAAGAGAAACTTTAGGGACAAGTTTGCTGACAGGTGAGAAAATTAGGTCACCTGGTGAGGAATGTGATAAGGTTTTCACAGCATTGTGTGATGGAAGGTTTATTGATCCCATGTTGGATTGTCTAAAGGAGTGGAATGGTGCTCCTCTACCTATTTGCTAG
Protein sequence

>Msa0130990

MEFSNGDNSNGCNGSSMNLCNGETKTSNNNDPLNWGMAADSMKGSHLDEVKRMVEEYRKPVVPLGGKGLTIAQVAAVATHSTGVAVELAEEARSAVKASSDWVVDSMNKGTDSYGVTTGFGATSHRRTKQGGALQSELIRFLNAGIFGNGTESSQTLPPTATRAGMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLIPLAYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIETGFFELQPKEGLALVNGTAVGSGLASLVLFDTNLLVVLSELLSAIFAEVMLGKPQFTDHLIHKLKLHPGQIEAAAIMEHILDGSYYLKAAQKVHEINPLQKPKQDRYAIRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNMALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFTELVNDIYSNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISARKTAEAVEILKLMSSTFLVALCQAIDLRHIEENLKSVVKNTVSQVAKRILTVGVNGELHPSRFCEKDLLNVVEGEYVFAYVDDPCSATYPLMQKLRHVLVDHALQNGDKEANSSTSIFQKIGAFEEELKTLLPKEVENARVQVENGNPSVPNMIKECRSYPLYKFIRETLGTSLLTGEKIRSPGEECDKVFTALCDGRFIDPMLDCLKEWNGAPLPIC*