Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163630 | XP_013468001.2 | 90.691 | 376 | 12 | 2 | 1 | 353 | 26 | 401 | 0.0 | 690 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163630 | A0A396JQT9 | 90.691 | 376 | 12 | 2 | 1 | 353 | 26 | 401 | 0.0 | 690 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020630 | Msa0163630 | -0.800695 | 1.277468e-48 | -8.615850e-47 |
| Msa0120380 | Msa0163630 | 0.968024 | 4.310321e-128 | -8.615850e-47 |
| Msa0163630 | Msa0223100 | -0.800663 | 1.296856e-48 | -8.615850e-47 |
| Msa0163630 | Msa0252180 | -0.803484 | 3.410524e-49 | -8.615850e-47 |
| Msa0163630 | Msa0265210 | -0.800217 | 1.598423e-48 | -8.615850e-47 |
| Msa0163630 | Msa0419620 | 0.818934 | 1.512444e-52 | -8.615850e-47 |
| Msa0163630 | Msa0511720 | 0.814714 | 1.338658e-51 | -8.615850e-47 |
| Msa0163630 | Msa0655660 | 0.829240 | 5.749108e-55 | -8.615850e-47 |
| Msa0163630 | Msa1335970 | 0.804809 | 1.807160e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163630 | MtrunA17_Chr1g0178741 | 90.691 | 376 | 12 | 2 | 1 | 353 | 26 | 401 | 0.0 | 690 |
| Msa0163630 | MtrunA17_Chr1g0178721 | 87.766 | 376 | 23 | 2 | 1 | 353 | 1 | 376 | 0.0 | 670 |
| Msa0163630 | MtrunA17_Chr1g0171181 | 52.059 | 340 | 112 | 3 | 33 | 350 | 1 | 311 | 4.24e-122 | 354 |
| Msa0163630 | MtrunA17_Chr2g0321341 | 47.801 | 341 | 149 | 5 | 33 | 350 | 2 | 336 | 4.96e-116 | 340 |
| Msa0163630 | MtrunA17_Chr2g0321351 | 45.092 | 326 | 144 | 7 | 51 | 350 | 28 | 344 | 4.34e-93 | 282 |
| Msa0163630 | MtrunA17_Chr4g0026421 | 42.450 | 351 | 161 | 8 | 33 | 350 | 1 | 343 | 1.01e-89 | 273 |
| Msa0163630 | MtrunA17_Chr3g0136021 | 42.105 | 304 | 143 | 6 | 73 | 350 | 130 | 426 | 1.42e-77 | 244 |
| Msa0163630 | MtrunA17_Chr4g0029971 | 26.761 | 355 | 192 | 10 | 38 | 334 | 86 | 430 | 3.62e-29 | 117 |
| Msa0163630 | MtrunA17_Chr7g0263721 | 26.023 | 342 | 189 | 9 | 67 | 352 | 151 | 484 | 6.08e-27 | 111 |
| Msa0163630 | MtrunA17_Chr2g0321371 | 50.980 | 51 | 25 | 0 | 284 | 334 | 1 | 51 | 8.05e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163630 | AT3G48410.1 | 59.452 | 365 | 123 | 3 | 8 | 350 | 10 | 371 | 5.36e-156 | 443 |
| Msa0163630 | AT3G48410.2 | 59.452 | 365 | 123 | 3 | 8 | 350 | 52 | 413 | 1.16e-155 | 444 |
| Msa0163630 | AT2G36290.1 | 58.453 | 349 | 119 | 3 | 31 | 353 | 15 | 363 | 6.29e-151 | 429 |
| Msa0163630 | AT2G36290.2 | 58.213 | 347 | 119 | 3 | 33 | 353 | 3 | 349 | 3.80e-149 | 424 |
| Msa0163630 | AT1G74300.1 | 59.574 | 329 | 109 | 3 | 46 | 350 | 16 | 344 | 1.22e-143 | 410 |
| Msa0163630 | AT1G74280.1 | 56.707 | 328 | 118 | 3 | 47 | 350 | 34 | 361 | 5.49e-135 | 389 |
| Msa0163630 | AT1G74290.1 | 51.923 | 364 | 143 | 5 | 9 | 346 | 1 | 358 | 5.02e-131 | 379 |
| Msa0163630 | AT3G54240.1 | 48.538 | 342 | 154 | 2 | 33 | 352 | 5 | 346 | 3.35e-123 | 358 |
| Msa0163630 | AT5G22460.2 | 46.041 | 341 | 157 | 4 | 33 | 350 | 2 | 338 | 6.36e-109 | 322 |
| Msa0163630 | AT5G22460.3 | 46.041 | 341 | 157 | 4 | 33 | 350 | 2 | 338 | 6.36e-109 | 322 |
| Msa0163630 | AT5G22460.1 | 46.041 | 341 | 157 | 4 | 33 | 350 | 2 | 338 | 6.36e-109 | 322 |
| Msa0163630 | AT1G74300.2 | 56.735 | 245 | 83 | 2 | 129 | 350 | 1 | 245 | 1.24e-96 | 287 |
| Msa0163630 | AT3G03240.1 | 43.421 | 304 | 138 | 7 | 71 | 348 | 35 | 330 | 9.36e-81 | 249 |
| Msa0163630 | AT3G03230.1 | 43.234 | 303 | 139 | 6 | 71 | 348 | 35 | 329 | 1.48e-77 | 241 |
| Msa0163630 | AT3G44510.2 | 41.694 | 307 | 143 | 6 | 73 | 350 | 8 | 307 | 3.23e-76 | 238 |
| Msa0163630 | AT1G08310.2 | 40.129 | 309 | 152 | 6 | 68 | 350 | 5 | 306 | 3.52e-73 | 230 |
| Msa0163630 | AT1G08310.1 | 40.453 | 309 | 148 | 7 | 68 | 350 | 5 | 303 | 8.19e-72 | 226 |
| Msa0163630 | AT3G44510.3 | 41.395 | 215 | 96 | 4 | 73 | 262 | 8 | 217 | 6.85e-47 | 159 |
| Msa0163630 | AT1G08310.3 | 42.647 | 204 | 90 | 4 | 68 | 249 | 5 | 203 | 2.56e-45 | 155 |
| Msa0163630 | AT3G44510.1 | 37.433 | 187 | 105 | 4 | 172 | 350 | 19 | 201 | 1.02e-36 | 132 |
| Msa0163630 | AT3G44510.5 | 37.433 | 187 | 105 | 4 | 172 | 350 | 19 | 201 | 1.02e-36 | 132 |
| Msa0163630 | AT3G44510.4 | 37.433 | 187 | 105 | 4 | 172 | 350 | 19 | 201 | 1.02e-36 | 132 |
| Msa0163630 | AT3G09690.1 | 26.959 | 319 | 176 | 8 | 68 | 334 | 160 | 473 | 1.91e-25 | 107 |
| Msa0163630 | AT3G09690.2 | 26.959 | 319 | 176 | 8 | 68 | 334 | 160 | 473 | 1.91e-25 | 107 |
| Msa0163630 | AT5G02970.1 | 23.836 | 365 | 221 | 7 | 40 | 351 | 129 | 489 | 1.41e-23 | 102 |
Find 128 sgRNAs with CRISPR-Local
Find 438 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATATTGGATTTGGAAAA+TGG | 0.113721 | 1_4:-41864898 | Msa0163630:CDS |
| CCATCTCTTAGTTTGATTCT+TGG | 0.143000 | 1_4:+41867379 | None:intergenic |
| ATCAGGAGAGCCACATATTT+TGG | 0.144502 | 1_4:+41867420 | None:intergenic |
| CAGGATGTTGTCAAGGAATT+AGG | 0.172204 | 1_4:-41867143 | Msa0163630:CDS |
| CCAGTAATCACACTAATAAT+TGG | 0.177238 | 1_4:+41866477 | None:intergenic |
| CACTAGCAGTGTTGTTTATT+GGG | 0.228617 | 1_4:-41867483 | Msa0163630:CDS |
| AGAGGATTTGTTGGCCCTTC+TGG | 0.231299 | 1_4:+41869911 | None:intergenic |
| TTATACTTTGCTGTGTCTTT+AGG | 0.233495 | 1_4:+41867325 | None:intergenic |
| TTGATTCTTGGTGCTGTTAT+AGG | 0.241502 | 1_4:+41867391 | None:intergenic |
| ACACTAGCAGTGTTGTTTAT+TGG | 0.245373 | 1_4:-41867484 | Msa0163630:CDS |
| CGTGACTTGAATATTGGATT+TGG | 0.273224 | 1_4:-41864905 | Msa0163630:CDS |
| TCTTGTTTCGAAAGGATATC+TGG | 0.273570 | 1_4:+41866450 | None:intergenic |
| GCAAGGAGATGAAGATATTA+TGG | 0.279264 | 1_4:-41864813 | Msa0163630:CDS |
| ATGCTCTTTAATGTACGATT+TGG | 0.280505 | 1_4:+41867068 | None:intergenic |
| CCAATTATTAGTGTGATTAC+TGG | 0.288987 | 1_4:-41866477 | Msa0163630:CDS |
| GCTGGCAGGTGCAGCGCTCT+TGG | 0.294662 | 1_4:-41866649 | Msa0163630:intron |
| ATGAAGGTTCCGTTCATCTT+TGG | 0.298744 | 1_4:-41864835 | Msa0163630:CDS |
| AGTACCAATGACATAGAATT+TGG | 0.298887 | 1_4:+41867001 | None:intergenic |
| CTCCACCGTGACTTGAATAT+TGG | 0.300790 | 1_4:-41864911 | Msa0163630:CDS |
| GGCATTTATTATCTCCGTTT+CGG | 0.317984 | 1_4:-41864613 | Msa0163630:three_prime_UTR |
| TGAACGGAACCTTCATTGTT+TGG | 0.318164 | 1_4:+41864842 | None:intergenic |
| GAACCTTCATTGTTTGGAAA+TGG | 0.319981 | 1_4:+41864848 | None:intergenic |
| GCTTGCTGATCAATTGGAAT+TGG | 0.321990 | 1_4:-41867027 | Msa0163630:CDS |
| TGGCCCCAGTCGTCAACTTC+TGG | 0.327316 | 1_4:-41866629 | Msa0163630:CDS |
| AGCAAGCTCTTCTATATCTA+AGG | 0.347016 | 1_4:+41867043 | None:intergenic |
| ATGTAATTTCCATTGGGAAT+AGG | 0.350187 | 1_4:+41866572 | None:intergenic |
| AGGATGTTGTCAAGGAATTA+GGG | 0.352902 | 1_4:-41867142 | Msa0163630:CDS |
| TATAGAAAATTACGGGTGAT+AGG | 0.365312 | 1_4:+41867245 | None:intergenic |
| CTTGCTGATCAATTGGAATT+GGG | 0.366848 | 1_4:-41867026 | Msa0163630:CDS |
| TACCATGAACTTCCAGGTTC+TGG | 0.368062 | 1_4:-41864740 | Msa0163630:CDS |
| GCTTCGGCCGTTAAGTTTGC+AGG | 0.370202 | 1_4:+41866594 | None:intergenic |
| CCGGCTATCCAGGCCAGCTT+TGG | 0.389990 | 1_4:-41864634 | Msa0163630:three_prime_UTR |
| TCCTTTGATAGACCTGGTTA+TGG | 0.390537 | 1_4:-41867107 | Msa0163630:CDS |
| TGTTTATTGGGGTTCTAGCA+TGG | 0.403951 | 1_4:-41867471 | Msa0163630:CDS |
| ACACGCCATGGCTAACATAC+TGG | 0.404122 | 1_4:-41866521 | Msa0163630:CDS |
| GAATATTGGATTTGGAAAAT+GGG | 0.404775 | 1_4:-41864897 | Msa0163630:CDS |
| TTTGAGATGTATTTGGTGAT+AGG | 0.406630 | 1_4:-41864449 | Msa0163630:three_prime_UTR |
| AGAAGAGCTTGCTGATCAAT+TGG | 0.413236 | 1_4:-41867033 | Msa0163630:CDS |
| GTTCACTACCATGAACTTCC+AGG | 0.414844 | 1_4:-41864746 | Msa0163630:CDS |
| AGAGCTTGTAACTAAGTTGA+TGG | 0.419219 | 1_4:-41866424 | Msa0163630:CDS |
| AATAAATGCCAAAGCTGGCC+TGG | 0.424078 | 1_4:+41864626 | None:intergenic |
| GTTAAGTTTGCAGGAAGATC+AGG | 0.425710 | 1_4:+41866603 | None:intergenic |
| GGAAGCATCCTCACGGGAAA+AGG | 0.429795 | 1_4:+41864393 | None:intergenic |
| AAAATGGGAATATACTCCTT+TGG | 0.430264 | 1_4:-41864882 | Msa0163630:CDS |
| GGCCACCTCTTCCCTCATGC+TGG | 0.430633 | 1_4:-41864719 | Msa0163630:CDS |
| TCCATGGTTTCAGCAGTTGC+AGG | 0.431477 | 1_4:-41867291 | Msa0163630:CDS |
| GTTTATTGGGGTTCTAGCAT+GGG | 0.432543 | 1_4:-41867470 | Msa0163630:CDS |
| TTTCCATTGGGAATAGGCTT+CGG | 0.432983 | 1_4:+41866578 | None:intergenic |
| AAAGACAGATCGGGGTGATC+TGG | 0.433307 | 1_4:-41870116 | Msa0163630:five_prime_UTR |
| GGGTCCAAATTCTATGTCAT+TGG | 0.433593 | 1_4:-41867005 | Msa0163630:intron |
| CAGTAATCACACTAATAATT+GGG | 0.436521 | 1_4:+41866478 | None:intergenic |
| CAGAGACAGATCGACAAGTA+AGG | 0.438470 | 1_4:+41870056 | None:intergenic |
| CTGAAAAGAAGAGGATTTGT+TGG | 0.442436 | 1_4:+41869902 | None:intergenic |
| ATTGGTCATGTAATTTCCAT+TGG | 0.443960 | 1_4:+41866565 | None:intergenic |
| GCTGTTATAGGCGGCCCATC+AGG | 0.447054 | 1_4:+41867403 | None:intergenic |
| ACTAAGAGATGGAAGGCATT+TGG | 0.447348 | 1_4:-41867368 | Msa0163630:CDS |
| GGGAAGAGGTGGCCAGAACC+TGG | 0.461101 | 1_4:+41864728 | None:intergenic |
| GTATTGTTCACCGGCTATCC+AGG | 0.463790 | 1_4:-41864644 | Msa0163630:three_prime_UTR |
| CCAAAGCTGGCCTGGATAGC+CGG | 0.463929 | 1_4:+41864634 | None:intergenic |
| TTGGTCATGTAATTTCCATT+GGG | 0.464250 | 1_4:+41866566 | None:intergenic |
| GCCTGCAACTGCTGAAACCA+TGG | 0.467218 | 1_4:+41867290 | None:intergenic |
| AATCCATTTCCAAACAATGA+AGG | 0.474443 | 1_4:-41864851 | Msa0163630:CDS |
| CTTTAATGTACGATTTGGAT+CGG | 0.475587 | 1_4:+41867073 | None:intergenic |
| TTTAATGTACGATTTGGATC+GGG | 0.479858 | 1_4:+41867074 | None:intergenic |
| TGATCTTCCTGCAAACTTAA+CGG | 0.480686 | 1_4:-41866601 | Msa0163630:CDS |
| ATAGAAAATTACGGGTGATA+GGG | 0.484130 | 1_4:+41867246 | None:intergenic |
| TTGTCAGGTAGCCTAGTGGC+AGG | 0.493560 | 1_4:+41870160 | None:intergenic |
| GGCCAGAACCTGGAAGTTCA+TGG | 0.494202 | 1_4:+41864738 | None:intergenic |
| AAAATATGTGGCTCTCCTGA+TGG | 0.499572 | 1_4:-41867418 | Msa0163630:CDS |
| TCAGTTTGAATTCTCCGAAA+CGG | 0.505144 | 1_4:+41864599 | None:intergenic |
| ATGTATCGTTGTAGTGTGAC+AGG | 0.520150 | 1_4:+41864788 | None:intergenic |
| ATGGAAATTACATGACCAAT+GGG | 0.522449 | 1_4:-41866562 | Msa0163630:CDS |
| GGCCACCAGAAGTTGACGAC+TGG | 0.528373 | 1_4:+41866624 | None:intergenic |
| GAGATAATAAATGCCAAAGC+TGG | 0.529286 | 1_4:+41864621 | None:intergenic |
| TATAAAATCATCTATGTCCA+TGG | 0.533222 | 1_4:-41867307 | Msa0163630:CDS |
| GCCACCAGAAGTTGACGACT+GGG | 0.534398 | 1_4:+41866625 | None:intergenic |
| TAGGCTTCTGTATTGTTCAC+CGG | 0.534932 | 1_4:-41864653 | Msa0163630:three_prime_UTR |
| CACCTCTTCCCTCATGCTGG+TGG | 0.541190 | 1_4:-41864716 | Msa0163630:CDS |
| AAATATGTGGCTCTCCTGAT+GGG | 0.544519 | 1_4:-41867417 | Msa0163630:CDS |
| GCTCTTTGTCTTGTTTCGAA+AGG | 0.544942 | 1_4:+41866442 | None:intergenic |
| CAAATCCAATATTCAAGTCA+CGG | 0.545788 | 1_4:+41864906 | None:intergenic |
| GAGCAACACGAAGCGCCCAT+TGG | 0.547807 | 1_4:+41866547 | None:intergenic |
| CCAAGAATCAAACTAAGAGA+TGG | 0.548477 | 1_4:-41867379 | Msa0163630:CDS |
| ATTGTATCCTTTGATAGACC+TGG | 0.548650 | 1_4:-41867113 | Msa0163630:CDS |
| TCTCTCACAACAATGGCCAC+TGG | 0.550600 | 1_4:-41869975 | Msa0163630:exon |
| ATCTCCTTGCCAAAGATGAA+CGG | 0.553409 | 1_4:+41864826 | None:intergenic |
| ACTAGCAGTGTTGTTTATTG+GGG | 0.557315 | 1_4:-41867482 | Msa0163630:CDS |
| CCCCAGTCGTCAACTTCTGG+TGG | 0.560902 | 1_4:-41866626 | Msa0163630:CDS |
| CACCACCAGCATGAGGGAAG+AGG | 0.561504 | 1_4:+41864714 | None:intergenic |
| AATGGAAATTACATGACCAA+TGG | 0.565003 | 1_4:-41866563 | Msa0163630:CDS |
| TTGCTGATCAATTGGAATTG+GGG | 0.565301 | 1_4:-41867025 | Msa0163630:CDS |
| ATCAGCTGGAAGCATCCTCA+CGG | 0.571098 | 1_4:+41864386 | None:intergenic |
| CAGCTCGTTCTCACACCAGA+AGG | 0.572309 | 1_4:-41869926 | Msa0163630:CDS |
| ACATCGCGCAAAACCTTCCG+TGG | 0.574053 | 1_4:-41864769 | Msa0163630:CDS |
| GTGAATTCTAACCTGCCACT+AGG | 0.575689 | 1_4:-41870171 | Msa0163630:five_prime_UTR |
| AGAGACAGATCGACAAGTAA+GGG | 0.579291 | 1_4:+41870057 | None:intergenic |
| TGAAGGAAGCTGAAAAGAAG+AGG | 0.580727 | 1_4:+41869893 | None:intergenic |
| ATTCTTGGTGCTGTTATAGG+CGG | 0.580740 | 1_4:+41867394 | None:intergenic |
| GGTTCCGTTCATCTTTGGCA+AGG | 0.581480 | 1_4:-41864830 | Msa0163630:CDS |
| CGGCCGAAGCCTATTCCCAA+TGG | 0.581823 | 1_4:-41866581 | Msa0163630:CDS |
| CCAAAGCAGGTAAGACAACA+AGG | 0.584374 | 1_4:-41864947 | Msa0163630:intron |
| CAATATTCAAGTCACGGTGG+AGG | 0.590667 | 1_4:+41864912 | None:intergenic |
| GCTCCTCCTCCCAAAATATG+TGG | 0.590810 | 1_4:-41867430 | Msa0163630:CDS |
| ACTGGTGGAACACTCAAAGA+TGG | 0.597899 | 1_4:-41866503 | Msa0163630:CDS |
| TTCCACCAGTATGTTAGCCA+TGG | 0.599195 | 1_4:+41866516 | None:intergenic |
| CTTCTCTTCTCTCACAACAA+TGG | 0.602036 | 1_4:-41869982 | Msa0163630:exon |
| TCAGCTGGAAGCATCCTCAC+GGG | 0.606316 | 1_4:+41864387 | None:intergenic |
| TCCATAACCAGGTCTATCAA+AGG | 0.608223 | 1_4:+41867106 | None:intergenic |
| CACCAGCATGAGGGAAGAGG+TGG | 0.608346 | 1_4:+41864717 | None:intergenic |
| GGACAATAAAGAGAATTATG+TGG | 0.612355 | 1_4:-41866403 | Msa0163630:intron |
| CGCCATGGCTAACATACTGG+TGG | 0.613077 | 1_4:-41866518 | Msa0163630:CDS |
| CATGGTAGTGAACCCACGGA+AGG | 0.617397 | 1_4:+41864756 | None:intergenic |
| AATTACGGGTGATAGGGTGT+TGG | 0.623286 | 1_4:+41867252 | None:intergenic |
| TCACTCACACCACCAGCATG+AGG | 0.623856 | 1_4:+41864707 | None:intergenic |
| GAATCAAACTAAGAGATGGA+AGG | 0.623906 | 1_4:-41867375 | Msa0163630:CDS |
| GGATCACTTTCTCCATAACC+AGG | 0.628496 | 1_4:+41867095 | None:intergenic |
| CACTCACACCACCAGCATGA+GGG | 0.635948 | 1_4:+41864708 | None:intergenic |
| CATCCTCACGGGAAAAGGTG+AGG | 0.636564 | 1_4:+41864398 | None:intergenic |
| AGCTCGTTCTCACACCAGAA+GGG | 0.638872 | 1_4:-41869925 | Msa0163630:CDS |
| CATTTGGCATACAAAGAGCA+TGG | 0.641716 | 1_4:-41867352 | Msa0163630:CDS |
| AGTTCATGGTAGTGAACCCA+CGG | 0.642351 | 1_4:+41864752 | None:intergenic |
| GTGTTGCTCACTACACGCCA+TGG | 0.657333 | 1_4:-41866533 | Msa0163630:CDS |
| GCTTGTGCAGGATGTTGTCA+AGG | 0.658123 | 1_4:-41867150 | Msa0163630:intron |
| CATCGCGCAAAACCTTCCGT+GGG | 0.671853 | 1_4:-41864768 | Msa0163630:CDS |
| GGATGTTGTCAAGGAATTAG+GGG | 0.673580 | 1_4:-41867141 | Msa0163630:CDS |
| CAGTTGCAGGCATGACGCTG+TGG | 0.675923 | 1_4:-41867278 | Msa0163630:CDS |
| CCACCAGAAGTTGACGACTG+GGG | 0.688382 | 1_4:+41866626 | None:intergenic |
| ATCCAATATTCAAGTCACGG+TGG | 0.730301 | 1_4:+41864909 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATAATTTTTCTATTC+TGG | + | chr1_4:41866327-41866346 | None:intergenic | 10.0% |
| !! | AAATGTAATATAGAAAATTA+CGG | + | chr1_4:41867327-41867346 | None:intergenic | 10.0% |
| !!! | TAAATTTATAACTTTTTATG+TGG | - | chr1_4:41869588-41869607 | Msa0163630:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTGTC+AGG | + | chr1_4:41864419-41864438 | None:intergenic | 15.0% |
| !! | GTTACAAGAAAAAAAAAATT+AGG | - | chr1_4:41864799-41864818 | Msa0163630:CDS | 15.0% |
| !!! | TGTATTTTGATATTTACATA+TGG | - | chr1_4:41866971-41866990 | Msa0163630:intron | 15.0% |
| !! | ACAATCTTAAACATAAATTA+TGG | + | chr1_4:41867005-41867024 | None:intergenic | 15.0% |
| !! | AATGTAATATAGAAAATTAC+GGG | + | chr1_4:41867326-41867345 | None:intergenic | 15.0% |
| !! | ATAGAAATAGTTTATACATA+AGG | - | chr1_4:41868657-41868676 | Msa0163630:intron | 15.0% |
| !! | AAATAATACACAGAATAATA+CGG | - | chr1_4:41868909-41868928 | Msa0163630:intron | 15.0% |
| !!! | TTTTAGCTTTCAAAGTTTAA+TGG | - | chr1_4:41864746-41864765 | Msa0163630:CDS | 20.0% |
| !!! | TTTAGCTTTCAAAGTTTAAT+GGG | - | chr1_4:41864747-41864766 | Msa0163630:CDS | 20.0% |
| !!! | AGCAAAAAAAATAAAAGTGT+TGG | + | chr1_4:41866354-41866373 | None:intergenic | 20.0% |
| !! | AATTAAAAATGTAATCCTGA+AGG | - | chr1_4:41866532-41866551 | Msa0163630:CDS | 20.0% |
| !! | TCAAGATTAAAAACAATTGT+TGG | + | chr1_4:41866877-41866896 | None:intergenic | 20.0% |
| !! | AACTACAAATAAGCTAAATA+AGG | + | chr1_4:41867856-41867875 | None:intergenic | 20.0% |
| !!! | TCAAAATTGACTTTGAATTT+TGG | - | chr1_4:41868278-41868297 | Msa0163630:intron | 20.0% |
| !! | AAAAATAAACACATGTATCA+CGG | + | chr1_4:41868384-41868403 | None:intergenic | 20.0% |
| !! | AATAATTTGAAAACAGCTTA+TGG | + | chr1_4:41868563-41868582 | None:intergenic | 20.0% |
| !! | AATCATCTAAAAGATTGATT+CGG | + | chr1_4:41869078-41869097 | None:intergenic | 20.0% |
| !!! | TCAATCTTTTAGATGATTAT+TGG | - | chr1_4:41869080-41869099 | Msa0163630:intron | 20.0% |
| !!! | ATAATATGTCTTGTTTCAAT+TGG | - | chr1_4:41869539-41869558 | Msa0163630:intron | 20.0% |
| !!! | TTTTAAAATTTACAGAAGCT+GGG | - | chr1_4:41870081-41870100 | Msa0163630:five_prime_UTR | 20.0% |
| ! | AAACAAACAAAAAGACAGAT+CGG | - | chr1_4:41864435-41864454 | Msa0163630:three_prime_UTR | 25.0% |
| ! | TGAATATAGAATGATGAAGA+TGG | - | chr1_4:41864823-41864842 | Msa0163630:CDS | 25.0% |
| ! | CTTTGTCTGTTATGAAAAAT+TGG | - | chr1_4:41865164-41865183 | Msa0163630:intron | 25.0% |
| !!! | AAATTGGTTTTGCAGTATTA+TGG | - | chr1_4:41865180-41865199 | Msa0163630:intron | 25.0% |
| !!! | ATATTGCTACTTTTTTCCTA+GGG | + | chr1_4:41865373-41865392 | None:intergenic | 25.0% |
| !!! | AATATTGCTACTTTTTTCCT+AGG | + | chr1_4:41865374-41865393 | None:intergenic | 25.0% |
| !!! | AAGTAGCAATATTTTTAGAG+CGG | - | chr1_4:41865381-41865400 | Msa0163630:intron | 25.0% |
| ! | AATATCAATGTCATTGAGAA+GGG | - | chr1_4:41865614-41865633 | Msa0163630:intron | 25.0% |
| ! | GGTATCTTAAAATTCTTTCT+GGG | + | chr1_4:41865788-41865807 | None:intergenic | 25.0% |
| ! | TGGTATCTTAAAATTCTTTC+TGG | + | chr1_4:41865789-41865808 | None:intergenic | 25.0% |
| ! | AACTTTGGCATAAAATATCT+TGG | + | chr1_4:41865809-41865828 | None:intergenic | 25.0% |
| !!! | ACAATAAAGGTATTCATGAA+TGG | - | chr1_4:41866482-41866501 | Msa0163630:CDS | 25.0% |
| ! | TATTTGTATTCGGAAATTCA+AGG | - | chr1_4:41866589-41866608 | Msa0163630:CDS | 25.0% |
| ! | TATTTATCTGCCTTCTAATT+TGG | - | chr1_4:41867024-41867043 | Msa0163630:CDS | 25.0% |
| ! | TATAAAATCATCTATGTCCA+TGG | - | chr1_4:41867254-41867273 | Msa0163630:intron | 25.0% |
| ! | ACTTATTAGAGTTTATCTAC+TGG | - | chr1_4:41867659-41867678 | Msa0163630:intron | 25.0% |
| ! | CAGTAATCACACTAATAATT+GGG | + | chr1_4:41868086-41868105 | None:intergenic | 25.0% |
| !! | CTTTTAGATGATTGCAAAAT+TGG | - | chr1_4:41868192-41868211 | Msa0163630:intron | 25.0% |
| !!! | ATTTAGCTGATAGTTTTGAT+TGG | - | chr1_4:41868246-41868265 | Msa0163630:intron | 25.0% |
| ! | GATATTCACATAAACAATCA+CGG | + | chr1_4:41868304-41868323 | None:intergenic | 25.0% |
| ! | TGATTGTTTATGTGAATATC+AGG | - | chr1_4:41868304-41868323 | Msa0163630:intron | 25.0% |
| ! | TCTGTATTCATAAATTATCC+TGG | + | chr1_4:41868598-41868617 | None:intergenic | 25.0% |
| ! | CTAAGAAATCGAGAATAATA+AGG | + | chr1_4:41868728-41868747 | None:intergenic | 25.0% |
| ! | CTTATTATTCTCGATTTCTT+AGG | - | chr1_4:41868726-41868745 | Msa0163630:intron | 25.0% |
| !! | ATCATCTAAAAGATTGATTC+GGG | + | chr1_4:41869077-41869096 | None:intergenic | 25.0% |
| ! | TAACAACTTTCTAAATAAGC+TGG | + | chr1_4:41869140-41869159 | None:intergenic | 25.0% |
| ! | AGGGAAAATTGATAAATACA+AGG | + | chr1_4:41869224-41869243 | None:intergenic | 25.0% |
| ! | TATTATGCTCAATTGAATTG+AGG | + | chr1_4:41869470-41869489 | None:intergenic | 25.0% |
| ! | TGAATATTGGATTTGGAAAA+TGG | - | chr1_4:41869663-41869682 | Msa0163630:intron | 25.0% |
| ! | GAATATTGGATTTGGAAAAT+GGG | - | chr1_4:41869664-41869683 | Msa0163630:intron | 25.0% |
| !!! | ACTATCATTAAGTCACTTTT+AGG | - | chr1_4:41869878-41869897 | Msa0163630:intron | 25.0% |
| !!! | CTTTTAAAATTTACAGAAGC+TGG | - | chr1_4:41870080-41870099 | Msa0163630:five_prime_UTR | 25.0% |
| !!! | TGTTGATTTTGAGATGTATT+TGG | - | chr1_4:41870105-41870124 | Msa0163630:five_prime_UTR | 25.0% |
| AACAAACAAAAAGACAGATC+GGG | - | chr1_4:41864436-41864455 | Msa0163630:three_prime_UTR | 30.0% | |
| CTGTATTAGTTCAGTTAGTT+AGG | - | chr1_4:41864955-41864974 | Msa0163630:intron | 30.0% | |
| AGTATCAATCTTCAACTTGT+GGG | + | chr1_4:41865028-41865047 | None:intergenic | 30.0% | |
| AAGTATCAATCTTCAACTTG+TGG | + | chr1_4:41865029-41865048 | None:intergenic | 30.0% | |
| ATCGATACTTGTAAATGAGA+TGG | - | chr1_4:41865057-41865076 | Msa0163630:intron | 30.0% | |
| !!! | TATTGCTACTTTTTTCCTAG+GGG | + | chr1_4:41865372-41865391 | None:intergenic | 30.0% |
| CGGTTATAGTAATTCCAATT+GGG | + | chr1_4:41865426-41865445 | None:intergenic | 30.0% | |
| ACGGTTATAGTAATTCCAAT+TGG | + | chr1_4:41865427-41865446 | None:intergenic | 30.0% | |
| AATTCTTCTCTAGATCTACA+CGG | + | chr1_4:41865446-41865465 | None:intergenic | 30.0% | |
| CAATATCAATGTCATTGAGA+AGG | - | chr1_4:41865613-41865632 | Msa0163630:intron | 30.0% | |
| CTCACTTTACTTTCTATCTT+GGG | + | chr1_4:41865710-41865729 | None:intergenic | 30.0% | |
| TTTCCTTCATTGAGAGTTAA+AGG | + | chr1_4:41866117-41866136 | None:intergenic | 30.0% | |
| AGGAAATATTGGGACAATAA+AGG | - | chr1_4:41866469-41866488 | Msa0163630:CDS | 30.0% | |
| AACAACACTCTGATAACTAT+AGG | - | chr1_4:41866817-41866836 | Msa0163630:intron | 30.0% | |
| TAGCTATAAACCTCATACTA+AGG | + | chr1_4:41866915-41866934 | None:intergenic | 30.0% | |
| AATTACAATATGCTGAACAC+AGG | + | chr1_4:41866944-41866963 | None:intergenic | 30.0% | |
| GTTTGTAATGCCAAATTAGA+AGG | + | chr1_4:41867037-41867056 | None:intergenic | 30.0% | |
| ! | TTATACTTTGCTGTGTCTTT+AGG | + | chr1_4:41867239-41867258 | None:intergenic | 30.0% |
| ATAGAAAATTACGGGTGATA+GGG | + | chr1_4:41867318-41867337 | None:intergenic | 30.0% | |
| TATAGAAAATTACGGGTGAT+AGG | + | chr1_4:41867319-41867338 | None:intergenic | 30.0% | |
| ! | TTTAATGTACGATTTGGATC+GGG | + | chr1_4:41867490-41867509 | None:intergenic | 30.0% |
| ! | CTTTAATGTACGATTTGGAT+CGG | + | chr1_4:41867491-41867510 | None:intergenic | 30.0% |
| ATGCTCTTTAATGTACGATT+TGG | + | chr1_4:41867496-41867515 | None:intergenic | 30.0% | |
| AGTACCAATGACATAGAATT+TGG | + | chr1_4:41867563-41867582 | None:intergenic | 30.0% | |
| ATAAAAACTTGTGAGACTCT+TGG | - | chr1_4:41867683-41867702 | Msa0163630:intron | 30.0% | |
| TAAAAACTTGTGAGACTCTT+GGG | - | chr1_4:41867684-41867703 | Msa0163630:intron | 30.0% | |
| TGCTTTGATATAAGCTATCT+TGG | + | chr1_4:41867775-41867794 | None:intergenic | 30.0% | |
| ATGTAATTTCCATTGGGAAT+AGG | + | chr1_4:41867992-41868011 | None:intergenic | 30.0% | |
| TTGGTCATGTAATTTCCATT+GGG | + | chr1_4:41867998-41868017 | None:intergenic | 30.0% | |
| ATTGGTCATGTAATTTCCAT+TGG | + | chr1_4:41867999-41868018 | None:intergenic | 30.0% | |
| AATGGAAATTACATGACCAA+TGG | - | chr1_4:41867998-41868017 | Msa0163630:intron | 30.0% | |
| ATGGAAATTACATGACCAAT+GGG | - | chr1_4:41867999-41868018 | Msa0163630:intron | 30.0% | |
| CCAGTAATCACACTAATAAT+TGG | + | chr1_4:41868087-41868106 | None:intergenic | 30.0% | |
| CCAATTATTAGTGTGATTAC+TGG | - | chr1_4:41868084-41868103 | Msa0163630:intron | 30.0% | |
| GGACAATAAAGAGAATTATG+TGG | - | chr1_4:41868158-41868177 | Msa0163630:intron | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr1_4:41868477-41868496 | None:intergenic | 30.0% | |
| ! | AAAACCACAATAGTTTGTCT+TGG | - | chr1_4:41868868-41868887 | Msa0163630:intron | 30.0% |
| !!! | AGTTTTTCAAGGAACCATAA+GGG | + | chr1_4:41868996-41869015 | None:intergenic | 30.0% |
| !!! | AAGTTTTTCAAGGAACCATA+AGG | + | chr1_4:41868997-41869016 | None:intergenic | 30.0% |
| ! | TTATGCCAAGAAGTTTTTCA+AGG | + | chr1_4:41869007-41869026 | None:intergenic | 30.0% |
| ATAACGAGGTAATCAATCTT+CGG | - | chr1_4:41869023-41869042 | Msa0163630:intron | 30.0% | |
| CAAATCCAATATTCAAGTCA+CGG | + | chr1_4:41869658-41869677 | None:intergenic | 30.0% | |
| AAAATGGGAATATACTCCTT+TGG | - | chr1_4:41869679-41869698 | Msa0163630:intron | 30.0% | |
| !! | AATGGATTTTGAAGATCCAA+AGG | + | chr1_4:41869698-41869717 | None:intergenic | 30.0% |
| AATCCATTTCCAAACAATGA+AGG | - | chr1_4:41869710-41869729 | Msa0163630:intron | 30.0% | |
| ! | TTTGAGATGTATTTGGTGAT+AGG | - | chr1_4:41870112-41870131 | Msa0163630:five_prime_UTR | 30.0% |
| ACAAACAAAAAGACAGATCG+GGG | - | chr1_4:41864437-41864456 | Msa0163630:three_prime_UTR | 35.0% | |
| ! | AATTTTTCTGCTAACTCCAG+TGG | + | chr1_4:41864605-41864624 | None:intergenic | 35.0% |
| CTGAAAAGAAGAGGATTTGT+TGG | + | chr1_4:41864662-41864681 | None:intergenic | 35.0% | |
| CTTTGAGCAAGAAAAGAGAA+AGG | + | chr1_4:41864719-41864738 | None:intergenic | 35.0% | |
| !! | GTTCTTCAGCTTTAGAATTG+TGG | - | chr1_4:41864777-41864796 | Msa0163630:CDS | 35.0% |
| TATCAATCTTCAACTTGTGG+GGG | + | chr1_4:41865026-41865045 | None:intergenic | 35.0% | |
| GTATCAATCTTCAACTTGTG+GGG | + | chr1_4:41865027-41865046 | None:intergenic | 35.0% | |
| !! | TGGTTTTGCAGTATTATGGA+AGG | - | chr1_4:41865184-41865203 | Msa0163630:intron | 35.0% |
| TAAGTCAGTAAGTGAGTAAC+TGG | - | chr1_4:41865262-41865281 | Msa0163630:intron | 35.0% | |
| TGTAGAATGCCATGTAATCA+AGG | - | chr1_4:41865343-41865362 | Msa0163630:intron | 35.0% | |
| TATAGTAATTCCAATTGGGC+TGG | + | chr1_4:41865422-41865441 | None:intergenic | 35.0% | |
| TTGAAAGGTTTACTAGTCCA+GGG | + | chr1_4:41865485-41865504 | None:intergenic | 35.0% | |
| TGCTCAAATCACTACTTGAA+AGG | + | chr1_4:41865500-41865519 | None:intergenic | 35.0% | |
| CCTCACTTTACTTTCTATCT+TGG | + | chr1_4:41865711-41865730 | None:intergenic | 35.0% | |
| CCAAGATAGAAAGTAAAGTG+AGG | - | chr1_4:41865708-41865727 | Msa0163630:intron | 35.0% | |
| TTATGCCAAAGTTGTTGTCA+AGG | - | chr1_4:41865816-41865835 | Msa0163630:intron | 35.0% | |
| AGTATCCTTGACAACAACTT+TGG | + | chr1_4:41865824-41865843 | None:intergenic | 35.0% | |
| ATAAATGAGGAGGGTTGTAT+AGG | - | chr1_4:41865898-41865917 | Msa0163630:intron | 35.0% | |
| ATAGGAGTAAGTTGTGATGT+TGG | - | chr1_4:41865916-41865935 | Msa0163630:intron | 35.0% | |
| GAATGCTAAGCTCAAAAGTA+AGG | - | chr1_4:41865970-41865989 | Msa0163630:intron | 35.0% | |
| TAATACAAGCGAGTAGAGAA+TGG | + | chr1_4:41866012-41866031 | None:intergenic | 35.0% | |
| CTTCATTGAGAGTTAAAGGA+GGG | + | chr1_4:41866113-41866132 | None:intergenic | 35.0% | |
| GCATATTCAACAATGAAACG+CGG | + | chr1_4:41866147-41866166 | None:intergenic | 35.0% | |
| TTGCCTTCGCTATCATTAAA+GGG | + | chr1_4:41866172-41866191 | None:intergenic | 35.0% | |
| ATTGCCTTCGCTATCATTAA+AGG | + | chr1_4:41866173-41866192 | None:intergenic | 35.0% | |
| !! | CATTTTAGCAACCTGAGAAA+CGG | - | chr1_4:41866211-41866230 | Msa0163630:intron | 35.0% |
| TTTCATTAACACCGTTTCTC+AGG | + | chr1_4:41866225-41866244 | None:intergenic | 35.0% | |
| AGTCAAAAGGAAGACAGAAA+CGG | + | chr1_4:41866258-41866277 | None:intergenic | 35.0% | |
| TCTATTCTGGACAAACTTGT+TGG | + | chr1_4:41866314-41866333 | None:intergenic | 35.0% | |
| TCTAAGTAGTTAGAGGATTC+AGG | - | chr1_4:41866408-41866427 | Msa0163630:CDS | 35.0% | |
| CTAAGTAGTTAGAGGATTCA+GGG | - | chr1_4:41866409-41866428 | Msa0163630:CDS | 35.0% | |
| TTGTGGCTAGAGGAAATATT+GGG | - | chr1_4:41866459-41866478 | Msa0163630:CDS | 35.0% | |
| AATGGAATGAGTGCAATTAG+AGG | - | chr1_4:41866500-41866519 | Msa0163630:CDS | 35.0% | |
| AAAATGTAATCCTGAAGGTG+AGG | - | chr1_4:41866537-41866556 | Msa0163630:CDS | 35.0% | |
| TGCGAGTGTCTATTTGTATT+CGG | - | chr1_4:41866579-41866598 | Msa0163630:CDS | 35.0% | |
| TGGGAAAATCTTCTCATTGA+AGG | - | chr1_4:41866757-41866776 | Msa0163630:intron | 35.0% | |
| TCTAGAGACTAGAAACTAAC+AGG | - | chr1_4:41866787-41866806 | Msa0163630:intron | 35.0% | |
| AATCTTGAATCAATCCCTGT+CGG | - | chr1_4:41866889-41866908 | Msa0163630:intron | 35.0% | |
| ATTTGGCATTACAAACTCTC+AGG | - | chr1_4:41867041-41867060 | Msa0163630:CDS | 35.0% | |
| !! | ACACTAGCAGTGTTGTTTAT+TGG | - | chr1_4:41867077-41867096 | Msa0163630:CDS | 35.0% |
| !! | CACTAGCAGTGTTGTTTATT+GGG | - | chr1_4:41867078-41867097 | Msa0163630:CDS | 35.0% |
| !! | ACTAGCAGTGTTGTTTATTG+GGG | - | chr1_4:41867079-41867098 | Msa0163630:CDS | 35.0% |
| !! | TTGATTCTTGGTGCTGTTAT+AGG | + | chr1_4:41867173-41867192 | None:intergenic | 35.0% |
| ! | CCATCTCTTAGTTTGATTCT+TGG | + | chr1_4:41867185-41867204 | None:intergenic | 35.0% |
| CCAAGAATCAAACTAAGAGA+TGG | - | chr1_4:41867182-41867201 | Msa0163630:intron | 35.0% | |
| GAATCAAACTAAGAGATGGA+AGG | - | chr1_4:41867186-41867205 | Msa0163630:intron | 35.0% | |
| TATTTAATGTGAGCTTGTGC+AGG | - | chr1_4:41867399-41867418 | Msa0163630:CDS | 35.0% | |
| AGGATGTTGTCAAGGAATTA+GGG | - | chr1_4:41867419-41867438 | Msa0163630:CDS | 35.0% | |
| ATTGTATCCTTTGATAGACC+TGG | - | chr1_4:41867448-41867467 | Msa0163630:CDS | 35.0% | |
| AGCAAGCTCTTCTATATCTA+AGG | + | chr1_4:41867521-41867540 | None:intergenic | 35.0% | |
| CTTGCTGATCAATTGGAATT+GGG | - | chr1_4:41867535-41867554 | Msa0163630:intron | 35.0% | |
| TTGCTGATCAATTGGAATTG+GGG | - | chr1_4:41867536-41867555 | Msa0163630:intron | 35.0% | |
| AACTCTAAATTGTACCTGTG+AGG | + | chr1_4:41867628-41867647 | None:intergenic | 35.0% | |
| AAAAACTTGTGAGACTCTTG+GGG | - | chr1_4:41867685-41867704 | Msa0163630:intron | 35.0% | |
| !!! | CAACCTTTTTCAATACTGAC+AGG | - | chr1_4:41867890-41867909 | Msa0163630:intron | 35.0% |
| TGATCTTCCTGCAAACTTAA+CGG | - | chr1_4:41867960-41867979 | Msa0163630:intron | 35.0% | |
| ! | TCTTGTTTCGAAAGGATATC+TGG | + | chr1_4:41868114-41868133 | None:intergenic | 35.0% |
| ! | AGAGCTTGTAACTAAGTTGA+TGG | - | chr1_4:41868137-41868156 | Msa0163630:intron | 35.0% |
| GTTTGTGGCATATATTCTCT+TGG | - | chr1_4:41868351-41868370 | Msa0163630:intron | 35.0% | |
| TCAAAAACAGAAGACATCGT+AGG | + | chr1_4:41868422-41868441 | None:intergenic | 35.0% | |
| ATGAACAACTTTCACTGCTT+AGG | - | chr1_4:41868450-41868469 | Msa0163630:intron | 35.0% | |
| ATTATTTCCATAAGCTCTCC+AGG | - | chr1_4:41868577-41868596 | Msa0163630:intron | 35.0% | |
| AAATTATCCTGGAGAGCTTA+TGG | + | chr1_4:41868587-41868606 | None:intergenic | 35.0% | |
| CTAACCAAGACAAACTATTG+TGG | + | chr1_4:41868875-41868894 | None:intergenic | 35.0% | |
| TGGTTCCTTGAAAAACTTCT+TGG | - | chr1_4:41868999-41869018 | Msa0163630:intron | 35.0% | |
| AAAAACTTCTTGGCATAACG+AGG | - | chr1_4:41869009-41869028 | Msa0163630:intron | 35.0% | |
| !! | AAGATTGATTCGGGCAAAAT+TGG | + | chr1_4:41869068-41869087 | None:intergenic | 35.0% |
| CAACTTTCTAAATAAGCTGG+AGG | + | chr1_4:41869137-41869156 | None:intergenic | 35.0% | |
| ACTCTGAGTCAATAAACTTC+AGG | + | chr1_4:41869266-41869285 | None:intergenic | 35.0% | |
| !!! | TTATTGACTCAGAGTCCTTT+TGG | - | chr1_4:41869271-41869290 | Msa0163630:intron | 35.0% |
| CTGCAACATCAATTACCAAA+AGG | + | chr1_4:41869289-41869308 | None:intergenic | 35.0% | |
| GAATCTGATAATCTGAGAAG+TGG | - | chr1_4:41869412-41869431 | Msa0163630:intron | 35.0% | |
| ! | GAGGCTAATCTGAAATTTGA+AGG | + | chr1_4:41869451-41869470 | None:intergenic | 35.0% |
| !! | GAGAGAAAGCATTTAGTAGA+AGG | + | chr1_4:41869509-41869528 | None:intergenic | 35.0% |
| CGTGACTTGAATATTGGATT+TGG | - | chr1_4:41869656-41869675 | Msa0163630:intron | 35.0% | |
| GAACCTTCATTGTTTGGAAA+TGG | + | chr1_4:41869716-41869735 | None:intergenic | 35.0% | |
| GCAAGGAGATGAAGATATTA+TGG | - | chr1_4:41869748-41869767 | Msa0163630:intron | 35.0% | |
| GAGATAATAAATGCCAAAGC+TGG | + | chr1_4:41869943-41869962 | None:intergenic | 35.0% | |
| GGCATTTATTATCTCCGTTT+CGG | - | chr1_4:41869948-41869967 | Msa0163630:CDS | 35.0% | |
| TCAGTTTGAATTCTCCGAAA+CGG | + | chr1_4:41869965-41869984 | None:intergenic | 35.0% | |
| !!! | TTTTTTGTCAGGTAGCCTAG+TGG | + | chr1_4:41864408-41864427 | None:intergenic | 40.0% |
| AGAGACAGATCGACAAGTAA+GGG | + | chr1_4:41864507-41864526 | None:intergenic | 40.0% | |
| CTTCTCTTCTCTCACAACAA+TGG | - | chr1_4:41864579-41864598 | Msa0163630:three_prime_UTR | 40.0% | |
| TGAAGGAAGCTGAAAAGAAG+AGG | + | chr1_4:41864671-41864690 | None:intergenic | 40.0% | |
| ! | TCTTCTTTTCAGCTTCCTTC+AGG | - | chr1_4:41864670-41864689 | Msa0163630:exon | 40.0% |
| !! | TTTTCAGCTTCCTTCAGGTT+GGG | - | chr1_4:41864675-41864694 | Msa0163630:CDS | 40.0% |
| ATCAATCTTCAACTTGTGGG+GGG | + | chr1_4:41865025-41865044 | None:intergenic | 40.0% | |
| ATGAGATGGAAGAAATGCTG+AGG | - | chr1_4:41865071-41865090 | Msa0163630:intron | 40.0% | |
| GTGCTTTGGTGAAGATCTAA+TGG | - | chr1_4:41865099-41865118 | Msa0163630:intron | 40.0% | |
| AGTTTCATATTCTTGCCGCA+CGG | - | chr1_4:41865124-41865143 | Msa0163630:intron | 40.0% | |
| TCTTGAGATTGATTACCGTG+CGG | + | chr1_4:41865142-41865161 | None:intergenic | 40.0% | |
| TAGGGGATTCCTTGATTACA+TGG | + | chr1_4:41865355-41865374 | None:intergenic | 40.0% | |
| ATGTAATCAAGGAATCCCCT+AGG | - | chr1_4:41865354-41865373 | Msa0163630:intron | 40.0% | |
| ! | TCCAGGGAATTTTCTTCAGT+GGG | + | chr1_4:41865469-41865488 | None:intergenic | 40.0% |
| CTTGAAAGGTTTACTAGTCC+AGG | + | chr1_4:41865486-41865505 | None:intergenic | 40.0% | |
| !! | ACTAGCCTTGGATTGGAATT+GGG | - | chr1_4:41865537-41865556 | Msa0163630:intron | 40.0% |
| TGAACGGGAAATGTGATATC+AGG | - | chr1_4:41865568-41865587 | Msa0163630:intron | 40.0% | |
| AAATGTGATATCAGGCCTAG+TGG | - | chr1_4:41865576-41865595 | Msa0163630:intron | 40.0% | |
| GCATTTACTTAACGACCACT+AGG | + | chr1_4:41865594-41865613 | None:intergenic | 40.0% | |
| TTCATTTGCACCACGATGAT+GGG | + | chr1_4:41865641-41865660 | None:intergenic | 40.0% | |
| TTTCATTTGCACCACGATGA+TGG | + | chr1_4:41865642-41865661 | None:intergenic | 40.0% | |
| TCGTGGTGCAAATGAAAACT+AGG | - | chr1_4:41865645-41865664 | Msa0163630:intron | 40.0% | |
| AAGTGAGGCAGTGTTGTATT+TGG | - | chr1_4:41865723-41865742 | Msa0163630:intron | 40.0% | |
| GCAGTGTTGTATTTGGCAAA+TGG | - | chr1_4:41865730-41865749 | Msa0163630:intron | 40.0% | |
| TTTATGTGGCCGATATTGTC+CGG | + | chr1_4:41865883-41865902 | None:intergenic | 40.0% | |
| CAATATCGGCCACATAAATG+AGG | - | chr1_4:41865885-41865904 | Msa0163630:intron | 40.0% | |
| TACAACCCTCCTCATTTATG+TGG | + | chr1_4:41865897-41865916 | None:intergenic | 40.0% | |
| TGCTAAGCTCAAAAGTAAGG+TGG | - | chr1_4:41865973-41865992 | Msa0163630:intron | 40.0% | |
| GGGAAGAGTTCATGAAACTT+GGG | - | chr1_4:41866070-41866089 | Msa0163630:intron | 40.0% | |
| GGAAGAGTTCATGAAACTTG+GGG | - | chr1_4:41866071-41866090 | Msa0163630:intron | 40.0% | |
| CCTTCATTGAGAGTTAAAGG+AGG | + | chr1_4:41866114-41866133 | None:intergenic | 40.0% | |
| CCTCCTTTAACTCTCAATGA+AGG | - | chr1_4:41866111-41866130 | Msa0163630:intron | 40.0% | |
| TTGCTAAAATGGCTACTGTG+AGG | + | chr1_4:41866202-41866221 | None:intergenic | 40.0% | |
| ! | CGTTTCTCAGGTTGCTAAAA+TGG | + | chr1_4:41866213-41866232 | None:intergenic | 40.0% |
| AAAGGAAGACAGAAACGGAA+GGG | + | chr1_4:41866253-41866272 | None:intergenic | 40.0% | |
| AAAAGGAAGACAGAAACGGA+AGG | + | chr1_4:41866254-41866273 | None:intergenic | 40.0% | |
| AATGGGTGTACAGAGTCAAA+AGG | + | chr1_4:41866271-41866290 | None:intergenic | 40.0% | |
| CACTTCTATCGGCAGTAAAT+GGG | + | chr1_4:41866288-41866307 | None:intergenic | 40.0% | |
| TCACTTCTATCGGCAGTAAA+TGG | + | chr1_4:41866289-41866308 | None:intergenic | 40.0% | |
| CAATATTTCCTCTAGCCACA+AGG | + | chr1_4:41866460-41866479 | None:intergenic | 40.0% | |
| CTTGTGGCTAGAGGAAATAT+TGG | - | chr1_4:41866458-41866477 | Msa0163630:CDS | 40.0% | |
| TATTCGGAAATTCAAGGCCA+GGG | - | chr1_4:41866595-41866614 | Msa0163630:CDS | 40.0% | |
| ! | TGTTTATTGGGGTTCTAGCA+TGG | - | chr1_4:41867090-41867109 | Msa0163630:CDS | 40.0% |
| ! | GTTTATTGGGGTTCTAGCAT+GGG | - | chr1_4:41867091-41867110 | Msa0163630:CDS | 40.0% |
| ! | TCAGGAGAGCCACATATTTT+GGG | + | chr1_4:41867143-41867162 | None:intergenic | 40.0% |
| ! | ATCAGGAGAGCCACATATTT+TGG | + | chr1_4:41867144-41867163 | None:intergenic | 40.0% |
| AAAATATGTGGCTCTCCTGA+TGG | - | chr1_4:41867143-41867162 | Msa0163630:CDS | 40.0% | |
| AAATATGTGGCTCTCCTGAT+GGG | - | chr1_4:41867144-41867163 | Msa0163630:intron | 40.0% | |
| !! | ATTCTTGGTGCTGTTATAGG+CGG | + | chr1_4:41867170-41867189 | None:intergenic | 40.0% |
| !! | ACTAAGAGATGGAAGGCATT+TGG | - | chr1_4:41867193-41867212 | Msa0163630:intron | 40.0% |
| CATTTGGCATACAAAGAGCA+TGG | - | chr1_4:41867209-41867228 | Msa0163630:intron | 40.0% | |
| CAGGATGTTGTCAAGGAATT+AGG | - | chr1_4:41867418-41867437 | Msa0163630:CDS | 40.0% | |
| GGATGTTGTCAAGGAATTAG+GGG | - | chr1_4:41867420-41867439 | Msa0163630:CDS | 40.0% | |
| TCCTTTGATAGACCTGGTTA+TGG | - | chr1_4:41867454-41867473 | Msa0163630:CDS | 40.0% | |
| TCCATAACCAGGTCTATCAA+AGG | + | chr1_4:41867458-41867477 | None:intergenic | 40.0% | |
| !! | AGAAGAGCTTGCTGATCAAT+TGG | - | chr1_4:41867528-41867547 | Msa0163630:intron | 40.0% |
| ! | GCTTGCTGATCAATTGGAAT+TGG | - | chr1_4:41867534-41867553 | Msa0163630:intron | 40.0% |
| GGGTCCAAATTCTATGTCAT+TGG | - | chr1_4:41867556-41867575 | Msa0163630:intron | 40.0% | |
| TATGTCATTGGTACTTCCCT+GGG | - | chr1_4:41867568-41867587 | Msa0163630:intron | 40.0% | |
| AAGCTATCTTGGAGAGCTTA+TGG | + | chr1_4:41867764-41867783 | None:intergenic | 40.0% | |
| ! | CAGCCTGTCAGTATTGAAAA+AGG | + | chr1_4:41867896-41867915 | None:intergenic | 40.0% |
| !!! | CTTTTTCAATACTGACAGGC+TGG | - | chr1_4:41867894-41867913 | Msa0163630:intron | 40.0% |
| GTTAAGTTTGCAGGAAGATC+AGG | + | chr1_4:41867961-41867980 | None:intergenic | 40.0% | |
| TTTCCATTGGGAATAGGCTT+CGG | + | chr1_4:41867986-41868005 | None:intergenic | 40.0% | |
| !! | GCTCTTTGTCTTGTTTCGAA+AGG | + | chr1_4:41868122-41868141 | None:intergenic | 40.0% |
| AGCTGCACAAATTCAGTTTG+TGG | - | chr1_4:41868336-41868355 | Msa0163630:intron | 40.0% | |
| AGCACTTGTGAGACTGTTTA+TGG | - | chr1_4:41868519-41868538 | Msa0163630:intron | 40.0% | |
| CTCATGCTTTGTAATCATGC+TGG | - | chr1_4:41868840-41868859 | Msa0163630:intron | 40.0% | |
| GCATGATCATGTCTTCTAGA+TGG | - | chr1_4:41868964-41868983 | Msa0163630:intron | 40.0% | |
| TGATCATGTCTTCTAGATGG+AGG | - | chr1_4:41868967-41868986 | Msa0163630:intron | 40.0% | |
| TTTCCAACCATTCGGGTAAA+GGG | + | chr1_4:41869114-41869133 | None:intergenic | 40.0% | |
| AAACTTCAGGCAGTTATCCA+TGG | + | chr1_4:41869253-41869272 | None:intergenic | 40.0% | |
| ! | TTTTATGTGGCTTCCAAAGC+AGG | - | chr1_4:41869601-41869620 | Msa0163630:intron | 40.0% |
| ATCCAATATTCAAGTCACGG+TGG | + | chr1_4:41869655-41869674 | None:intergenic | 40.0% | |
| TGAACGGAACCTTCATTGTT+TGG | + | chr1_4:41869722-41869741 | None:intergenic | 40.0% | |
| ATGAAGGTTCCGTTCATCTT+TGG | - | chr1_4:41869726-41869745 | Msa0163630:intron | 40.0% | |
| ATCTCCTTGCCAAAGATGAA+CGG | + | chr1_4:41869738-41869757 | None:intergenic | 40.0% | |
| ATGTATCGTTGTAGTGTGAC+AGG | + | chr1_4:41869776-41869795 | None:intergenic | 40.0% | |
| !!! | GTCACTTTTAGGTGTGAAGT+AGG | - | chr1_4:41869889-41869908 | Msa0163630:intron | 40.0% |
| TAGGCTTCTGTATTGTTCAC+CGG | - | chr1_4:41869908-41869927 | Msa0163630:CDS | 40.0% | |
| GTGAATTCTAACCTGCCACT+AGG | - | chr1_4:41864390-41864409 | Msa0163630:three_prime_UTR | 45.0% | |
| CAGAGACAGATCGACAAGTA+AGG | + | chr1_4:41864508-41864527 | None:intergenic | 45.0% | |
| ! | CTTTTCAGCTTCCTTCAGGT+TGG | - | chr1_4:41864674-41864693 | Msa0163630:CDS | 45.0% |
| !! | ATGCTGAGGAAGAAGTGCTT+TGG | - | chr1_4:41865085-41865104 | Msa0163630:intron | 45.0% |
| AACTGGCTGAAGCTATTGCA+CGG | - | chr1_4:41865279-41865298 | Msa0163630:intron | 45.0% | |
| TCCCACTGAAGAAAATTCCC+TGG | - | chr1_4:41865465-41865484 | Msa0163630:intron | 45.0% | |
| ! | GTCCAGGGAATTTTCTTCAG+TGG | + | chr1_4:41865470-41865489 | None:intergenic | 45.0% |
| !! | GGCTAGTGTGTGTCATTTCA+AGG | + | chr1_4:41865524-41865543 | None:intergenic | 45.0% |
| ! | GAAATGACACACACTAGCCT+TGG | - | chr1_4:41865525-41865544 | Msa0163630:intron | 45.0% |
| !! | CACTAGCCTTGGATTGGAAT+TGG | - | chr1_4:41865536-41865555 | Msa0163630:intron | 45.0% |
| ACTCTCCCAATTCCAATCCA+AGG | + | chr1_4:41865545-41865564 | None:intergenic | 45.0% | |
| GAATTGGGAGAGTAGCTGAA+CGG | - | chr1_4:41865552-41865571 | Msa0163630:intron | 45.0% | |
| AATTGGGAGAGTAGCTGAAC+GGG | - | chr1_4:41865553-41865572 | Msa0163630:intron | 45.0% | |
| TCATTTGCACCACGATGATG+GGG | + | chr1_4:41865640-41865659 | None:intergenic | 45.0% | |
| GGTTCCATAGCAGTTGAAAC+CGG | - | chr1_4:41865666-41865685 | Msa0163630:intron | 45.0% | |
| ! | CAAACCGGTTTCAACTGCTA+TGG | + | chr1_4:41865673-41865692 | None:intergenic | 45.0% |
| TTCTATCTTGGGCTTGTCCT+TGG | + | chr1_4:41865699-41865718 | None:intergenic | 45.0% | |
| GACGTTGCTCACTCATCTAA+AGG | + | chr1_4:41865761-41865780 | None:intergenic | 45.0% | |
| TAGATGAGTGAGCAACGTCA+AGG | - | chr1_4:41865762-41865781 | Msa0163630:intron | 45.0% | |
| TGTCAAGGATACTCCTGATC+CGG | - | chr1_4:41865831-41865850 | Msa0163630:intron | 45.0% | |
| ATCCTCAACCCGGACAATAT+CGG | - | chr1_4:41865871-41865890 | Msa0163630:intron | 45.0% | |
| TTATGTGGCCGATATTGTCC+GGG | + | chr1_4:41865882-41865901 | None:intergenic | 45.0% | |
| TATCGGCCACATAAATGAGG+AGG | - | chr1_4:41865888-41865907 | Msa0163630:intron | 45.0% | |
| ATCGGCCACATAAATGAGGA+GGG | - | chr1_4:41865889-41865908 | Msa0163630:intron | 45.0% | |
| AAGCAACTTGCAAACCTGTG+AGG | - | chr1_4:41866048-41866067 | Msa0163630:intron | 45.0% | |
| AGCAACTTGCAAACCTGTGA+GGG | - | chr1_4:41866049-41866068 | Msa0163630:intron | 45.0% | |
| GGGGAAGAGTTCATGAAACT+TGG | - | chr1_4:41866069-41866088 | Msa0163630:intron | 45.0% | |
| AGTTCATGAAACTTGGGGCA+TGG | - | chr1_4:41866076-41866095 | Msa0163630:intron | 45.0% | |
| CCTTCGCTATCATTAAAGGG+TGG | + | chr1_4:41866169-41866188 | None:intergenic | 45.0% | |
| ! | CCACCCTTTAATGATAGCGA+AGG | - | chr1_4:41866166-41866185 | Msa0163630:intron | 45.0% |
| CTTGTTGGCGTCACTTCTAT+CGG | + | chr1_4:41866299-41866318 | None:intergenic | 45.0% | |
| CCTCTAACTACTTAGAAGCC+AGG | + | chr1_4:41866404-41866423 | None:intergenic | 45.0% | |
| CCTGGCTTCTAAGTAGTTAG+AGG | - | chr1_4:41866401-41866420 | Msa0163630:intron | 45.0% | |
| GGAATGAGTGCAATTAGAGG+TGG | - | chr1_4:41866503-41866522 | Msa0163630:CDS | 45.0% | |
| ATGAGTGCAATTAGAGGTGG+AGG | - | chr1_4:41866506-41866525 | Msa0163630:CDS | 45.0% | |
| ATGTAATCCTGAAGGTGAGG+TGG | - | chr1_4:41866540-41866559 | Msa0163630:CDS | 45.0% | |
| ! | AAGGTGAGGTGGTGGTTTAT+CGG | - | chr1_4:41866551-41866570 | Msa0163630:CDS | 45.0% |
| GTATTCGGAAATTCAAGGCC+AGG | - | chr1_4:41866594-41866613 | Msa0163630:CDS | 45.0% | |
| ACATGGACAGGATACAGTAG+TGG | - | chr1_4:41866618-41866637 | Msa0163630:CDS | 45.0% | |
| ! | ACAGGATACAGTAGTGGAGT+GGG | - | chr1_4:41866624-41866643 | Msa0163630:CDS | 45.0% |
| GGTGGGAGAAGAATTGATGT+TGG | - | chr1_4:41866685-41866704 | Msa0163630:intron | 45.0% | |
| TGGATGAGAGTTCCCAACAT+TGG | - | chr1_4:41866705-41866724 | Msa0163630:intron | 45.0% | |
| ! | ACGGGGAAGGATCTTTTGAA+TGG | - | chr1_4:41866737-41866756 | Msa0163630:intron | 45.0% |
| ! | CGGGGAAGGATCTTTTGAAT+GGG | - | chr1_4:41866738-41866757 | Msa0163630:intron | 45.0% |
| AATTACGGGTGATAGGGTGT+TGG | + | chr1_4:41867312-41867331 | None:intergenic | 45.0% | |
| GGATCACTTTCTCCATAACC+AGG | + | chr1_4:41867469-41867488 | None:intergenic | 45.0% | |
| CTATGTCATTGGTACTTCCC+TGG | - | chr1_4:41867567-41867586 | Msa0163630:intron | 45.0% | |
| ACCTGTGAGGTATGTGCTTA+AGG | + | chr1_4:41867615-41867634 | None:intergenic | 45.0% | |
| TTCCACCAGTATGTTAGCCA+TGG | + | chr1_4:41868048-41868067 | None:intergenic | 45.0% | |
| ACTGGTGGAACACTCAAAGA+TGG | - | chr1_4:41868058-41868077 | Msa0163630:intron | 45.0% | |
| TTCACTGCTTAGGACCTGTT+TGG | - | chr1_4:41868460-41868479 | Msa0163630:intron | 45.0% | |
| CTAGATGGAGGTTTCCCTTA+TGG | - | chr1_4:41868979-41868998 | Msa0163630:intron | 45.0% | |
| GAGGTAATCAATCTTCGGAG+TGG | - | chr1_4:41869028-41869047 | Msa0163630:intron | 45.0% | |
| AAGACATCCCTTTACCCGAA+TGG | - | chr1_4:41869104-41869123 | Msa0163630:intron | 45.0% | |
| GTTTCCAACCATTCGGGTAA+AGG | + | chr1_4:41869115-41869134 | None:intergenic | 45.0% | |
| !! | AGAGCAATGCTGCTTTGACT+TGG | - | chr1_4:41869159-41869178 | Msa0163630:intron | 45.0% |
| !! | CTGCTTTGACTTGGTTAGCT+CGG | - | chr1_4:41869168-41869187 | Msa0163630:intron | 45.0% |
| ! | CCTTGTTGTCTTACCTGCTT+TGG | + | chr1_4:41869617-41869636 | None:intergenic | 45.0% |
| CCAAAGCAGGTAAGACAACA+AGG | - | chr1_4:41869614-41869633 | Msa0163630:intron | 45.0% | |
| CAATATTCAAGTCACGGTGG+AGG | + | chr1_4:41869652-41869671 | None:intergenic | 45.0% | |
| CTCCACCGTGACTTGAATAT+TGG | - | chr1_4:41869650-41869669 | Msa0163630:intron | 45.0% | |
| ! | AGTTCATGGTAGTGAACCCA+CGG | + | chr1_4:41869812-41869831 | None:intergenic | 45.0% |
| GTTCACTACCATGAACTTCC+AGG | - | chr1_4:41869815-41869834 | Msa0163630:intron | 45.0% | |
| TACCATGAACTTCCAGGTTC+TGG | - | chr1_4:41869821-41869840 | Msa0163630:intron | 45.0% | |
| AATAAATGCCAAAGCTGGCC+TGG | + | chr1_4:41869938-41869957 | None:intergenic | 45.0% | |
| AAAGACAGATCGGGGTGATC+TGG | - | chr1_4:41864445-41864464 | Msa0163630:three_prime_UTR | 50.0% | |
| TCTCTCACAACAATGGCCAC+TGG | - | chr1_4:41864586-41864605 | Msa0163630:three_prime_UTR | 50.0% | |
| AGCTCGTTCTCACACCAGAA+GGG | - | chr1_4:41864636-41864655 | Msa0163630:three_prime_UTR | 50.0% | |
| !! | AGAGGATTTGTTGGCCCTTC+TGG | + | chr1_4:41864653-41864672 | None:intergenic | 50.0% |
| AGAGCAAAGACCCAACCTGA+AGG | + | chr1_4:41864688-41864707 | None:intergenic | 50.0% | |
| GTCAGAACAACCAGCCCAAT+TGG | - | chr1_4:41865409-41865428 | Msa0163630:intron | 50.0% | |
| !! | GACACACACTAGCCTTGGAT+TGG | - | chr1_4:41865530-41865549 | Msa0163630:intron | 50.0% |
| !! | TTGAAACCGGTTTGCTGCCA+AGG | - | chr1_4:41865679-41865698 | Msa0163630:intron | 50.0% |
| GTCAAGGATACTCCTGATCC+GGG | - | chr1_4:41865832-41865851 | Msa0163630:intron | 50.0% | |
| ATCATCTTTCCGAGCTCTCC+CGG | + | chr1_4:41865853-41865872 | None:intergenic | 50.0% | |
| CGGAAAGATGATCCTCAACC+CGG | - | chr1_4:41865861-41865880 | Msa0163630:intron | 50.0% | |
| !! | TGATGTTGGTGAGCATCGAG+TGG | - | chr1_4:41865930-41865949 | Msa0163630:intron | 50.0% |
| GCAACTTGCAAACCTGTGAG+GGG | - | chr1_4:41866050-41866069 | Msa0163630:intron | 50.0% | |
| TCATGAACTCTTCCCCTCAC+AGG | + | chr1_4:41866065-41866084 | None:intergenic | 50.0% | |
| CTCTTAGCCTCAACCCAACA+CGG | - | chr1_4:41866372-41866391 | Msa0163630:intron | 50.0% | |
| TCTTAGCCTCAACCCAACAC+GGG | - | chr1_4:41866373-41866392 | Msa0163630:intron | 50.0% | |
| AGGATTCAGGGATAGCATCG+AGG | - | chr1_4:41866421-41866440 | Msa0163630:CDS | 50.0% | |
| ! | GGATTCAGGGATAGCATCGA+GGG | - | chr1_4:41866422-41866441 | Msa0163630:CDS | 50.0% |
| ! | AGGGATAGCATCGAGGGAAA+GGG | - | chr1_4:41866428-41866447 | Msa0163630:CDS | 50.0% |
| ! | GGGAAAGGGCATATTCCTTG+TGG | - | chr1_4:41866442-41866461 | Msa0163630:CDS | 50.0% |
| GGCATATTCCTTGTGGCTAG+AGG | - | chr1_4:41866449-41866468 | Msa0163630:CDS | 50.0% | |
| TAATCCTGAAGGTGAGGTGG+TGG | - | chr1_4:41866543-41866562 | Msa0163630:CDS | 50.0% | |
| TAAACCACCACCTCACCTTC+AGG | + | chr1_4:41866550-41866569 | None:intergenic | 50.0% | |
| GAAATTCAAGGCCAGGGACA+TGG | - | chr1_4:41866601-41866620 | Msa0163630:CDS | 50.0% | |
| ! | GACAGGATACAGTAGTGGAG+TGG | - | chr1_4:41866623-41866642 | Msa0163630:CDS | 50.0% |
| GTTCAGGTGGCTGGAAAGAA+GGG | - | chr1_4:41866664-41866683 | Msa0163630:intron | 50.0% | |
| !! | GAGTTCCCAACATTGGCTCT+CGG | - | chr1_4:41866712-41866731 | Msa0163630:intron | 50.0% |
| ACCTCATACTAAGGCCGACA+GGG | + | chr1_4:41866906-41866925 | None:intergenic | 50.0% | |
| AACCTCATACTAAGGCCGAC+AGG | + | chr1_4:41866907-41866926 | None:intergenic | 50.0% | |
| GCTCCTCCTCCCAAAATATG+TGG | - | chr1_4:41867131-41867150 | Msa0163630:CDS | 50.0% | |
| !! | GAGCCACATATTTTGGGAGG+AGG | + | chr1_4:41867137-41867156 | None:intergenic | 50.0% |
| !! | GGAGAGCCACATATTTTGGG+AGG | + | chr1_4:41867140-41867159 | None:intergenic | 50.0% |
| TCCATGGTTTCAGCAGTTGC+AGG | - | chr1_4:41867270-41867289 | Msa0163630:CDS | 50.0% | |
| GCTTGTGCAGGATGTTGTCA+AGG | - | chr1_4:41867411-41867430 | Msa0163630:CDS | 50.0% | |
| TCATTGGTACTTCCCTGGGT+GGG | - | chr1_4:41867572-41867591 | Msa0163630:intron | 50.0% | |
| CCATACAATTTGCCCACCCA+GGG | + | chr1_4:41867587-41867606 | None:intergenic | 50.0% | |
| TCCATACAATTTGCCCACCC+AGG | + | chr1_4:41867588-41867607 | None:intergenic | 50.0% | |
| GCCTTAAGCACATACCTCAC+AGG | - | chr1_4:41867611-41867630 | Msa0163630:intron | 50.0% | |
| TTCAATACTGACAGGCTGGC+AGG | - | chr1_4:41867898-41867917 | Msa0163630:intron | 50.0% | |
| ACACGCCATGGCTAACATAC+TGG | - | chr1_4:41868040-41868059 | Msa0163630:intron | 50.0% | |
| CATCCCTTTACCCGAATGGT+TGG | - | chr1_4:41869108-41869127 | Msa0163630:intron | 50.0% | |
| CTGGAGGTTTCCAACCATTC+GGG | + | chr1_4:41869121-41869140 | None:intergenic | 50.0% | |
| GCTGGAGGTTTCCAACCATT+CGG | + | chr1_4:41869122-41869141 | None:intergenic | 50.0% | |
| ! | CAATTTTCCCTCCGCATCCA+TGG | - | chr1_4:41869233-41869252 | Msa0163630:intron | 50.0% |
| CAGTTATCCATGGATGCGGA+GGG | + | chr1_4:41869243-41869262 | None:intergenic | 50.0% | |
| CAGGCAGTTATCCATGGATG+CGG | + | chr1_4:41869247-41869266 | None:intergenic | 50.0% | |
| GGTTCCGTTCATCTTTGGCA+AGG | - | chr1_4:41869731-41869750 | Msa0163630:intron | 50.0% | |
| ! | GTATTGTTCACCGGCTATCC+AGG | - | chr1_4:41869917-41869936 | Msa0163630:CDS | 50.0% |
| ! | TATCCTCACCTTTTCCCGTG+AGG | - | chr1_4:41870160-41870179 | Msa0163630:five_prime_UTR | 50.0% |
| TTGTCAGGTAGCCTAGTGGC+AGG | + | chr1_4:41864404-41864423 | None:intergenic | 55.0% | |
| CAGCTCGTTCTCACACCAGA+AGG | - | chr1_4:41864635-41864654 | Msa0163630:three_prime_UTR | 55.0% | |
| GCTTGTCCTTGGCAGCAAAC+CGG | + | chr1_4:41865688-41865707 | None:intergenic | 55.0% | |
| ! | CAGGGATAGCATCGAGGGAA+AGG | - | chr1_4:41866427-41866446 | Msa0163630:CDS | 55.0% |
| CTGTATCCTGTCCATGTCCC+TGG | + | chr1_4:41866615-41866634 | None:intergenic | 55.0% | |
| TAGTGGAGTGGGAGAAGAGC+TGG | - | chr1_4:41866635-41866654 | Msa0163630:CDS | 55.0% | |
| AGTGGAGTGGGAGAAGAGCT+GGG | - | chr1_4:41866636-41866655 | Msa0163630:CDS | 55.0% | |
| GAAGAGCTGGGAACAGGTTC+AGG | - | chr1_4:41866648-41866667 | Msa0163630:intron | 55.0% | |
| GGTTCAGGTGGCTGGAAAGA+AGG | - | chr1_4:41866663-41866682 | Msa0163630:intron | 55.0% | |
| AGGTGGCTGGAAAGAAGGGT+GGG | - | chr1_4:41866668-41866687 | Msa0163630:intron | 55.0% | |
| CGTCACCGAGAGCCAATGTT+GGG | + | chr1_4:41866720-41866739 | None:intergenic | 55.0% | |
| !! | CCAACATTGGCTCTCGGTGA+CGG | - | chr1_4:41866718-41866737 | Msa0163630:intron | 55.0% |
| !! | CAACATTGGCTCTCGGTGAC+GGG | - | chr1_4:41866719-41866738 | Msa0163630:intron | 55.0% |
| !! | AACATTGGCTCTCGGTGACG+GGG | - | chr1_4:41866720-41866739 | Msa0163630:intron | 55.0% |
| TCCCTGTCGGCCTTAGTATG+AGG | - | chr1_4:41866902-41866921 | Msa0163630:intron | 55.0% | |
| GCCTGCAACTGCTGAAACCA+TGG | + | chr1_4:41867274-41867293 | None:intergenic | 55.0% | |
| GTCATTGGTACTTCCCTGGG+TGG | - | chr1_4:41867571-41867590 | Msa0163630:intron | 55.0% | |
| CCCTGGGTGGGCAAATTGTA+TGG | - | chr1_4:41867584-41867603 | Msa0163630:intron | 55.0% | |
| CCACCAGAAGTTGACGACTG+GGG | + | chr1_4:41867938-41867957 | None:intergenic | 55.0% | |
| GCCACCAGAAGTTGACGACT+GGG | + | chr1_4:41867939-41867958 | None:intergenic | 55.0% | |
| GCTTCGGCCGTTAAGTTTGC+AGG | + | chr1_4:41867970-41867989 | None:intergenic | 55.0% | |
| ! | GTGTTGCTCACTACACGCCA+TGG | - | chr1_4:41868028-41868047 | Msa0163630:intron | 55.0% |
| CGCCATGGCTAACATACTGG+TGG | - | chr1_4:41868043-41868062 | Msa0163630:intron | 55.0% | |
| GCAGTTATCCATGGATGCGG+AGG | + | chr1_4:41869244-41869263 | None:intergenic | 55.0% | |
| ACATCGCGCAAAACCTTCCG+TGG | - | chr1_4:41869792-41869811 | Msa0163630:intron | 55.0% | |
| CATCGCGCAAAACCTTCCGT+GGG | - | chr1_4:41869793-41869812 | Msa0163630:intron | 55.0% | |
| ! | CATGGTAGTGAACCCACGGA+AGG | + | chr1_4:41869808-41869827 | None:intergenic | 55.0% |
| GGCCAGAACCTGGAAGTTCA+TGG | + | chr1_4:41869826-41869845 | None:intergenic | 55.0% | |
| CACTCACACCACCAGCATGA+GGG | + | chr1_4:41869856-41869875 | None:intergenic | 55.0% | |
| TCACTCACACCACCAGCATG+AGG | + | chr1_4:41869857-41869876 | None:intergenic | 55.0% | |
| CATCCTCACGGGAAAAGGTG+AGG | + | chr1_4:41870166-41870185 | None:intergenic | 55.0% | |
| !! | GGAAGCATCCTCACGGGAAA+AGG | + | chr1_4:41870171-41870190 | None:intergenic | 55.0% |
| TGAGAAGGGCCCCATCATCG+TGG | - | chr1_4:41865628-41865647 | Msa0163630:intron | 60.0% | |
| ACTCCTGATCCGGGAGAGCT+CGG | - | chr1_4:41865841-41865860 | Msa0163630:intron | 60.0% | |
| TTTCCGAGCTCTCCCGGATC+AGG | + | chr1_4:41865847-41865866 | None:intergenic | 60.0% | |
| GGCCGATATTGTCCGGGTTG+AGG | + | chr1_4:41865876-41865895 | None:intergenic | 60.0% | |
| ! | GAAGCACCCGTGTTGGGTTG+AGG | + | chr1_4:41866382-41866401 | None:intergenic | 60.0% |
| AACCCAACACGGGTGCTTCC+TGG | - | chr1_4:41866383-41866402 | Msa0163630:intron | 60.0% | |
| !! | AGCCAGGAAGCACCCGTGTT+GGG | + | chr1_4:41866388-41866407 | None:intergenic | 60.0% |
| !! | AAGCCAGGAAGCACCCGTGT+TGG | + | chr1_4:41866389-41866408 | None:intergenic | 60.0% |
| TCAAGGCCAGGGACATGGAC+AGG | - | chr1_4:41866606-41866625 | Msa0163630:CDS | 60.0% | |
| GTGGGAGAAGAGCTGGGAAC+AGG | - | chr1_4:41866642-41866661 | Msa0163630:CDS | 60.0% | |
| GAGCTGGGAACAGGTTCAGG+TGG | - | chr1_4:41866651-41866670 | Msa0163630:intron | 60.0% | |
| TGGGAACAGGTTCAGGTGGC+TGG | - | chr1_4:41866655-41866674 | Msa0163630:intron | 60.0% | |
| CAGGTGGCTGGAAAGAAGGG+TGG | - | chr1_4:41866667-41866686 | Msa0163630:intron | 60.0% | |
| CCGTCACCGAGAGCCAATGT+TGG | + | chr1_4:41866721-41866740 | None:intergenic | 60.0% | |
| GCTGTTATAGGCGGCCCATC+AGG | + | chr1_4:41867161-41867180 | None:intergenic | 60.0% | |
| CAGTTGCAGGCATGACGCTG+TGG | - | chr1_4:41867283-41867302 | Msa0163630:CDS | 60.0% | |
| TGGCCCCAGTCGTCAACTTC+TGG | - | chr1_4:41867932-41867951 | Msa0163630:intron | 60.0% | |
| CCCCAGTCGTCAACTTCTGG+TGG | - | chr1_4:41867935-41867954 | Msa0163630:intron | 60.0% | |
| GGCCACCAGAAGTTGACGAC+TGG | + | chr1_4:41867940-41867959 | None:intergenic | 60.0% | |
| CGGCCGAAGCCTATTCCCAA+TGG | - | chr1_4:41867980-41867999 | Msa0163630:intron | 60.0% | |
| ! | GAGCAACACGAAGCGCCCAT+TGG | + | chr1_4:41868017-41868036 | None:intergenic | 60.0% |
| CACCAGCATGAGGGAAGAGG+TGG | + | chr1_4:41869847-41869866 | None:intergenic | 60.0% | |
| CACCTCTTCCCTCATGCTGG+TGG | - | chr1_4:41869845-41869864 | Msa0163630:intron | 60.0% | |
| CACCACCAGCATGAGGGAAG+AGG | + | chr1_4:41869850-41869869 | None:intergenic | 60.0% | |
| ! | CCAAAGCTGGCCTGGATAGC+CGG | + | chr1_4:41869930-41869949 | None:intergenic | 60.0% |
| !! | TTGGCTCTCGGTGACGGGGA+AGG | - | chr1_4:41866724-41866743 | Msa0163630:intron | 65.0% |
| GGGAAGAGGTGGCCAGAACC+TGG | + | chr1_4:41869836-41869855 | None:intergenic | 65.0% | |
| GGCCACCTCTTCCCTCATGC+TGG | - | chr1_4:41869842-41869861 | Msa0163630:intron | 65.0% | |
| CCGGCTATCCAGGCCAGCTT+TGG | - | chr1_4:41869927-41869946 | Msa0163630:CDS | 65.0% | |
| GCTGGCAGGTGCAGCGCTCT+TGG | - | chr1_4:41867912-41867931 | Msa0163630:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 41864390 | 41870193 | 41864390 | ID=Msa0163630;Name=Msa0163630 |
| chr1_4 | mRNA | 41864390 | 41870193 | 41864390 | ID=Msa0163630-mRNA-1;Parent=Msa0163630;Name=Msa0163630-mRNA-1;_AED=0.29;_eAED=0.29;_QI=208|0.75|0.6|1|1|1|5|283|353 |
| chr1_4 | exon | 41864390 | 41864960 | 41864390 | ID=Msa0163630-mRNA-1:exon:12132;Parent=Msa0163630-mRNA-1 |
| chr1_4 | exon | 41866404 | 41866663 | 41866404 | ID=Msa0163630-mRNA-1:exon:12131;Parent=Msa0163630-mRNA-1 |
| chr1_4 | exon | 41867006 | 41867162 | 41867006 | ID=Msa0163630-mRNA-1:exon:12130;Parent=Msa0163630-mRNA-1 |
| chr1_4 | exon | 41867258 | 41867520 | 41867258 | ID=Msa0163630-mRNA-1:exon:12129;Parent=Msa0163630-mRNA-1 |
| chr1_4 | exon | 41869892 | 41870193 | 41869892 | ID=Msa0163630-mRNA-1:exon:12128;Parent=Msa0163630-mRNA-1 |
| chr1_4 | five_prime_UTR | 41869986 | 41870193 | 41869986 | ID=Msa0163630-mRNA-1:five_prime_utr;Parent=Msa0163630-mRNA-1 |
| chr1_4 | CDS | 41869892 | 41869985 | 41869892 | ID=Msa0163630-mRNA-1:cds;Parent=Msa0163630-mRNA-1 |
| chr1_4 | CDS | 41867258 | 41867520 | 41867258 | ID=Msa0163630-mRNA-1:cds;Parent=Msa0163630-mRNA-1 |
| chr1_4 | CDS | 41867006 | 41867162 | 41867006 | ID=Msa0163630-mRNA-1:cds;Parent=Msa0163630-mRNA-1 |
| chr1_4 | CDS | 41866404 | 41866663 | 41866404 | ID=Msa0163630-mRNA-1:cds;Parent=Msa0163630-mRNA-1 |
| chr1_4 | CDS | 41864673 | 41864960 | 41864673 | ID=Msa0163630-mRNA-1:cds;Parent=Msa0163630-mRNA-1 |
| chr1_4 | three_prime_UTR | 41864390 | 41864672 | 41864390 | ID=Msa0163630-mRNA-1:three_prime_utr;Parent=Msa0163630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
